Psyllid ID: psy2775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-----
Protein Sequence
ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK
Secondary Structure (PSIPRED)
cccccccccccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccccEEEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEcccccccEEEEccccEEEEccccEEEEEEEEcccccEEEEEEccEEcccccEEEEccEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEccccEEEEEcccEEEEEEEEEcccccEEEEEEccEEccccEEEEEccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEcccccEEcccccEEEEccccEEEEEEEcccccEEEEEEccEEccccccEEEEEcccEEEEEEccccccccEEEEEEEEccEEEEEEEEEEcccEEEEccccEEEEccccEEEEEEEEccccEEEEEEccEEccccccEEEEEEccEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEcccEEcccccccEEEEcccccEEEEEEEcccccEEEEEEEEEcccccccccccccEEEEcccEEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccEEEEEEccEEEEEEcccccccccEEEEEEEEEcccEEEEEEEEEEEEEEccccccccccccccccEEccccccccccccEEEEccccccccccccccccEEEEcccEEEEEEEEEEccccEEEEEEccEEEcccccEEEEcccEEEEEEEEEcccccEEEEEEEEccccEEEEEEccEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccEEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccEEccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEcccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEcccccEEEEcccEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccccccccccEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEcccccEEEEcccEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEccccccccccccEEEEcccEEEEEEEccccccEEEEEEccEEcccccEEEEEEcccEEEEEEEEcccccccEEEEEEEEccccEEEEEEccccccccccccEEEEcccEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEccccccccccccccEEEcccEEEEEEEEccccccEEEEccccEEEccccccccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEEcccccccccccccccEEEEEcccccccccccccccccccccccccEccccccEEEEEccEEEEEEEEEcccccEEEEEEccEEccccccEEEEcccEEEEEEEEEEccccEEEEEEEEccccEEEEEEccEEcc
Coil and Loop (DISEMBL)
essladilegipptfskktkpvyaeenseVTLEVRLvavpepdllwyyngeplqetdevvfsdqsdmhsYVSIVTIKSIKKREEGVYTVVAKNregeakmdipvkvntgkpekpsileplhdvsitegESAVLSVqvggepspkvewykdgklikdrqitseknthTLTLIQcstkdkgrysvkvtnkegtvesaanlnvdpyepkesketppspppyvvseldtlqvntgkpekpsileplhdvsitegESAVLSVqvggepspkvewykdgklikdrqitseknthTLTLIQcstkdkgrysvkvtnkegtvesAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVtsdkadvkwfkdgqeiktskkvtieKKGTIRKLLIRNisvhdegeytcslpdqetsaelnvvelppeisvplqdvkvsrdekaSFEIELTKGDALVKWYKdgkeiafsenvtlsidgkkqKLIIFSAGledageyscrvgdtgdkeskatltveapavefltklpsvtlvphlgdatfqvelsspdiQVKWLNLfivptcplgspgqaplFIERFEEKTVKEKGTIRLMAKVkaspapsivwfrnnkpllsspkkreifdgENIILELKeadsetdagdyKVVAtnelgsathgarvtvdvekvgrppinsididrnhvhhldnidsprqstevdvekpvetapvidpppppevlvkkgedLKIEVRFkalpppkaewtvngtvivpskrvkgkaEFIKKLDDLEVKERENAVLEVEVTsdkadvkwfknnslik
Flexible Loop (DISEMBL)
essladilegipptfskktkpvyAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSivtiksikkreegVYTVVaknregeakmdipvkvntgkpekpsilEPLHDVSITEGESAVLsvqvggepspkvewykdgKLIKdrqitseknthtltliqcstkdkgrysvkvtnkegtvesaanlnvdpyepkesketppspppyVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLsvqvggepspkvewykdgKLIKdrqitseknthtltliqcstkdkgrysvkvtnkegtvesaanlnvdqgkAEFIKKLDDLEVKERENAVlevevtsdkadvkwfkdgqeiktskkvtiekkgtirkllirnisvhdegeyTCSLPDQETSAELNvvelppeisvplqdvkvsRDEKAsfeieltkgdalvKWYKDGKEIAFsenvtlsidgkkQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMakvkaspapsivwfrnnkpllsspkkreifdGENIILELkeadsetdaGDYKVVAtnelgsathgarvtvdvekVGRPpinsididrnhvhhldnidsprqstevDVEKPvetapvidpppppevLVKKGEDLKIEVRfkalpppkaewtvngtvivpskrvkgkaefikklddlevkerENAVlevevtsdkadvkwfknnslik
Low Complexity Region (SEG)
ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDpyepkesketppspppyvvseLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKpvetapvidpppppevlvKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK
Disordered region (IsUnstruct)
***************************SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK****************************************************VEWYKDGKLIKDRQITSEKNTHTLTLIQCST*******************************************************************************************VEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV******************KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL*********NVVEL*****V************ASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT******ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL*******EIFDGENIILELK********GDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV******************************************LKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWF*******
Disordered Region (DISOPRED)
*SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD***T*EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK*************************KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAV********************QVELSSPDIQVKWLNLFI***********APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP***********VHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLI*
Disordered Region (DISEMBL)
ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPY************PPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID**************ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK
Disordered Region (DISPRO)
*SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE***************************KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI**********VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	785	2.2.26 [Sep-21-2011]
Q9I7U4	18141	Titin OS=Drosophila melan	yes	N/A	0.843	0.036	0.326	3e-91
O01761	8081	Muscle M-line assembly pr	yes	N/A	0.877	0.085	0.275	3e-51
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.740	0.016	0.282	3e-48
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.597	0.013	0.300	1e-47
A2AAJ9	8891	Obscurin OS=Mus musculus	no	N/A	0.582	0.051	0.273	3e-44
Q5VST9	7968	Obscurin OS=Homo sapiens	no	N/A	0.605	0.059	0.276	9e-43
O75147	1896	Obscurin-like protein 1 O	no	N/A	0.579	0.239	0.246	7e-36
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.670	0.093	0.263	6e-33
Q63638	3259	Striated muscle-specific	no	N/A	0.642	0.154	0.266	1e-32
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.764	0.117	0.252	2e-32

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  336 bits (862), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 256/784 (32%), Positives = 375/784 (47%), Gaps = 122/784 (15%)

Query: 4     LADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVF 61
             LADILEGIPPTFSKK K  Y +EN+ V LE RLVAVPEPD++W +NGE +  +E   V  
Sbjct: 16616 LADILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDEEEIKNVRI 16675

Query: 62    SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLH 121
               +SDMH Y S+V I  +KK +EG Y V+A NREGEA++ I +KV T   E P ILEPL 
Sbjct: 16676 VTESDMHMYCSVVHISKVKKSQEGTYEVIATNREGEARLPITLKVRTTDKEAPQILEPLR 16735

Query: 122   DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
             ++ I EGES VLS Q+ G P PKV WYKDGK +K+ +  S+K+ HTLTLI     +KG Y
Sbjct: 16736 NMVIREGESVVLSTQIVGNPPPKVTWYKDGKPVKNAK--SDKDLHTLTLITPQKSEKGEY 16793

Query: 182   SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
             +VK  N  G+VE+ ANL ++  EP                         G  E P  +E 
Sbjct: 16794 TVKAVNPLGSVETTANLTIE--EPA-----------------------GGNAEPPLFVER 16828

Query: 242   LHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGKLIKDRQITSEKNTHTLTLIQCSTK-- 298
               + ++ +     L  +V G P P+V+W + +  L    +I    +   + LI       
Sbjct: 16829 FEEQNVPQKGEIRLPAKVSGNPVPEVQWLFNNTPLFPSERIQQVYDGENIELIIKDANPE 16888

Query: 299   -DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSDKAD 356
              D G Y    +N  G     A + V+  +  F KKL   + ++E ++  LE E TS    
Sbjct: 16889 TDSGDYKCIASNPIGKTSHGARVIVEVDEVTFTKKLKKTITIEEVQSLTLECE-TSHVVT 16947

Query: 357   VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
              KWF +G+E+       + + G   KL+IRN ++ D G YTC +  QET + + V++  P
Sbjct: 16948 TKWFFNGKELSGMDHRVVVEDGKTHKLVIRNTNLRDSGTYTCKVKKQETQSTVEVLQRKP 17007

Query: 417   EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQKLIIF 475
             +    L+D +V+  + A  ++ELT     V WYKDG++I   ++NV    DGK ++L+I 
Sbjct: 17008 DFIKVLEDYEVTEKDTAILDVELTTEATEVTWYKDGEKITPENKNVEFIKDGKARRLVIR 17067

Query: 476   SAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
                + D G+Y+C++   G + S   + +E P  E +  L  V  V    +A F+VELS  
Sbjct: 17068 DVTIHDEGQYTCKI--EGQECSCELVVIELPP-EIVEPLNDVA-VTKGENAVFEVELSKG 17123

Query: 536   DIQVKWL---------------------NLFIVPTCP--LGSPG--------------QA 558
             D  VKW                      +L IV   P  +G                 + 
Sbjct: 17124 DALVKWFKNGKEIVFNERIQLAIDGKKQSLRIVKAKPEDVGEYSVQVGEQTSKAKLTVEE 17183

Query: 559   PL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
             PL  F+ R  + T+  K T        + P   + W +  KP+  + K     +G    L
Sbjct: 17184 PLVDFVIRLPDITLATKTTDAEFTVQLSQPDVEVTWCKKGKPIKPNQKHEVFVEGTVRRL 17243

Query: 617   ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
              + +A S+ DAG+   VA N   S        + VE++  PP+ + D D+          
Sbjct: 17244 VIHDA-SDEDAGEISCVAENVTSST------KLCVEELKLPPVITSDKDQT--------- 17287

Query: 677   SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                                        + VK+ +D+   V++  +P P+A WT    VI 
Sbjct: 17288 ---------------------------IKVKENDDVTFTVKYTGVPTPEACWTTRKVVIP 17320

Query: 737   PSKR 740
              SKR
Sbjct: 17321 KSKR 17324

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.
Drosophila melanogaster (taxid: 7227)

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score =  204 bits (518), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 236/857 (27%), Positives = 353/857 (41%), Gaps = 168/857 (19%)

Query: 13   PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
            PTF ++      + N   TL V +  VP+P + W  +G+P+Q     V +      SY  
Sbjct: 3286 PTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQPVQTDSSHVIAKVEGSGSYS- 3344

Query: 73   IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV--NTGKPEKPSILEPLHDVSITEGES 130
             +TIK  +  + G Y   A N  GEAK +    V  N   PE    +E L  + + E ES
Sbjct: 3345 -ITIKDARLEDSGKYACRATNPAGEAKTEANFAVVKNLVPPE---FVEKLSPLEVKEKES 3400

Query: 131  AVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNT----HTLTLIQCSTKDKGRYSVKV 185
              LSV+V G P P VEW+KD   I  D     +K T     +LT+      D G YS + 
Sbjct: 3401 TTLSVKVVGTPEPSVEWFKDDTPISIDNVHVIQKQTAVGSFSLTINDARQGDVGIYSCRA 3460

Query: 186  TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
             N+ G   + AN  +             S PP    +L  L+V                 
Sbjct: 3461 RNEAGEALTTANFGI----------IRDSIPPEFTQKLRPLEVR---------------- 3494

Query: 246  SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSE---KNTHTLTLIQCSTKDK 300
               E E+  L V V G P P VEW+KD K I   +  I ++      HTLT+ Q   +D 
Sbjct: 3495 ---EQETLDLKVTVIGTPVPNVEWFKDDKPINIDNSHIFAKDEGSGHHTLTIKQARGEDV 3551

Query: 301  GRYSVKVTNKEGTVESAANLNVDQGKAE---FIKKLDDLEVKERENAVLEVEVTSD-KAD 356
            G Y+ K TN+ G  ++ AN+ V Q + E   F++ L   EV++ + A L V V    + +
Sbjct: 3552 GVYTCKATNEAGEAKTTANMAV-QEEIEAPLFVQGLKPYEVEQGKPAELVVRVEGKPEPE 3610

Query: 357  VKWFKDGQEIKTSKKVTIEKKG--TIRKLLIRNISVHDEGEYTCSLPDQ----ETSAELN 410
            VKWFKDG  I    +  IEKKG      L+I++ +  D G+YTC   ++    ET  EL 
Sbjct: 3611 VKWFKDGVPIAIDNQHVIEKKGENGSHTLVIKDTNNADFGKYTCQATNKAGKDETVGELK 3670

Query: 411  V----------VELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSE 459
            +           E+ P    PL++      +    E ++ K     +K++K+ + +   +
Sbjct: 3671 IPKYSFEKQTAEEVKPLFIEPLKETFAVEGDTVVLECKVNKESHPQIKFFKNDQPVEIGQ 3730

Query: 460  NVTLSI--DGKKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAPAVEFLTKLPS 516
            ++ L +  DG   KL I +A  ED G Y C  V   G   + A L      ++F  K+  
Sbjct: 3731 HMQLEVLEDGN-IKLTIQNAKKEDVGAYRCEAVNVAGKANTNADL-----KIQFAAKVEE 3784

Query: 517  VTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTI 576
                 H+ D + Q+E        ++  +    +    +   AP F+E     TV EK   
Sbjct: 3785 -----HVTDESGQLEEIG-----QFETVGDTASSKTDTGRGAPEFVELLRSCTVTEKQQA 3834

Query: 577  RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 636
             L  KVK  P P I W +  K +  S + R     +  +    +  ++ DAG+Y+  A N
Sbjct: 3835 ILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTLTFDNVTQADAGEYRCEAEN 3894

Query: 637  ELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVI 696
            E GSA     + V +E  G P I+               ++P      D  +PV+ A   
Sbjct: 3895 EYGSAWTEGPIIVTLE--GAPKIDG--------------EAP------DFLQPVKPA--- 3929

Query: 697  DPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK-------------- 742
                    +V  GE   +E +    P P  +W  NG  + PS RVK              
Sbjct: 3930 --------VVTVGETAVLEGKISGKPKPSVKWYKNGEELKPSDRVKIENLDDGTQRLTVT 3981

Query: 743  -------------GKAEF---------------------IKKLDDLEVKERENAVLEVEV 768
                            EF                      K+L  ++VKE E A  E +V
Sbjct: 3982 NAKLDDMDEYRCEASNEFGDVWSDVTLTVKEPAQVAPGFFKELSAIQVKETETAKFECKV 4041

Query: 769  TSDKADVKWFKNNSLIK 785
            +  K DVKWFK+ + +K
Sbjct: 4042 SGTKPDVKWFKDGTPLK 4058

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  193 bits (491), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 196/695 (28%), Positives = 296/695 (42%), Gaps = 114/695 (16%)

Query: 7     ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
             +LEG  P F+ K +     E  EV L+  +     P + W+ +G+ ++ +   V      
Sbjct: 12940 VLEG-DPYFTGKLQDYTGVEKDEVILQCEISKADAP-VKWFKDGKEIKPSKNAVIKADGK 12997

Query: 67    MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
                   ++ +K   K + G YT      +   K+DI       +  +  ++ PLH V + 
Sbjct: 12998 KR----MLILKKALKSDIGQYTCDCGTDKTSGKLDI-------EDREIKLVRPLHSVEVM 13046

Query: 127   EGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
             E E+A    ++  E      W   G+ +    D +I  E   H+L L  C     G    
Sbjct: 13047 ETETARFETEIS-EDDIHANWKLKGEALLQTPDCEIKEEGKIHSLVLHNCRLDQTGGVDF 13105

Query: 184   KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH 243
             +  N    V+S+A+L V                               KP    +L PL 
Sbjct: 13106 QAAN----VKSSAHLRV-------------------------------KPRVIGLLRPLK 13130

Query: 244   DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQI-TSEKNTHTLTLIQCSTKDK 300
             DV++T GE+A    ++  E  P VEWY  GK ++  D+ +  SE   HTLTL     +D 
Sbjct: 13131 DVTVTAGETATFDCELSYEDIP-VEWYLKGKKLEPSDKVVPRSEGKVHTLTLRDVKLEDA 13189

Query: 301   GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWF 360
             G   V++T K+   ++ ANL V +   EF K L+D  V+E   AVLE EV+ + A VKWF
Sbjct: 13190 GE--VQLTAKD--FKTHANLFVKEPPVEFTKPLEDQTVEEGATAVLECEVSRENAKVKWF 13245

Query: 361   KDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISV 420
             K+G EI  SKK  I   G +RKL+I + +  D   YTC   D +TS  LNVV  PP +  
Sbjct: 13246 KNGTEILKSKKYEIVADGRVRKLVIHDCTPEDIKTYTCDAKDFKTSCNLNVV--PPHVEF 13303

Query: 421   --PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAG 478
               PL D++V   E A FE EL++ +A VKW+KDG EI   +   +   G  + L+I    
Sbjct: 13304 LRPLTDLQVREKEMARFECELSRENAKVKWFKDGAEIKKGKKYDIISKGAVRILVINKCL 13363

Query: 479   LEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQ 538
             L+D  EYSC V       +   LTV      F   L ++  V          E+S P  +
Sbjct: 13364 LDDEAEYSCEVRTA---RTSGMLTVLEEEAVFTKNLANIE-VSETDTIKLVCEVSKPGAE 13419

Query: 539   VKWL--------------------NLFIVPTCPLGSPGQ-------------------AP 559
             V W                      + ++    L   G                    A 
Sbjct: 13420 VIWYKGDEEIIETGRYEILTEGRKRILVIQNAHLEDAGNYNCRLPSSRTDGKVKVHELAA 13479

Query: 560   LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 619
              FI + +   + E      +  +     P + W R++K L S  K   I DG+  +L +K
Sbjct: 13480 EFISKPQNLEILEGEKAEFVCSISKESFP-VQWKRDDKTLESGDKYDVIADGKKRVLVVK 13538

Query: 620   EADSETDAGDYKVVATNELGSATHGARVTVDVEKV 654
             +A  + D G Y V+    +G+A   A +TV +EK+
Sbjct: 13539 DATLQ-DMGTYVVM----VGAARAAAHLTV-IEKL 13567

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  192 bits (487), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 160/533 (30%), Positives = 254/533 (47%), Gaps = 64/533 (12%)

Query: 17    KKTKPVYAEENSEVTLEVRLVAVPEPDLL--WYYNGEPLQETDEVVFSDQSDMHSYVSIV 74
             K  +P+Y+ E  E         + E D+   W   GE L +T E    ++  +H    ++
Sbjct: 13897 KLVRPLYSVEVMETETARFETEISEDDIHANWKLKGEALLQTPECEIKEEGKIH----VL 13952

Query: 75    TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLS 134
              + + +  + G     A N +  A + +       KP    +L PL DV++T GE+A   
Sbjct: 13953 ILHNCRLDQTGGVDFQAANVKSSAHLRV-------KPRVIGLLRPLKDVTVTAGETATFD 14005

Query: 135   VQVGGEPSPKVEWYKDGKLIK--DRQIT-SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
              ++  E  P VEWY  GK ++  D+ +T SE   HTLTL     +D G   V++T K+  
Sbjct: 14006 CELSYEDIP-VEWYLKGKKLEPNDKVVTRSEGRVHTLTLRDVKLEDAGE--VQLTAKD-- 14060

Query: 192   VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGE 251
              ++ ANL V        KE P                           +PL D ++ E  
Sbjct: 14061 FKTQANLFV--------KEPPVE-----------------------FTKPLEDQTVEEEA 14089

Query: 252   SAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 308
             +AVL  +V  E + KV+W+K+G  I   K  +I ++     L +  C+ +D   Y+    
Sbjct: 14090 TAVLECEVSRE-NAKVKWFKNGTEILKSKKYEIVADGRVRKLIIHGCTPEDIKTYTCDAK 14148

Query: 309   NKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKT 368
             +     +++ NLNV     EF++ L DL+VKE+E A  E E++ +   V+WFKDG EIK 
Sbjct: 14149 D----FKTSCNLNVVPPHVEFLRPLTDLQVKEKETARFECEISKENEKVQWFKDGAEIKK 14204

Query: 369   SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVS 428
              KK  I  KG +R L+I    ++DE EY+C +    TS  L V+E     +  L +++VS
Sbjct: 14205 GKKYDIISKGAVRILVINKCLLNDEAEYSCEVRTARTSGMLTVLEEEAVFTKNLANLEVS 14264

Query: 429   RDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
               +      E++K  A V WYK  +EI  +    +  DG+K+ LII +A LEDAG Y+CR
Sbjct: 14265 EGDTIKLVCEVSKPGAEVIWYKGDEEIIETGRFEILTDGRKRILIIQNAQLEDAGSYNCR 14324

Query: 489   VGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKW 541
             +  +    + + + V   A EF++K P    +     A F   +S    +V+W
Sbjct: 14325 LPSS---RTDSKVKVHELAAEFISK-PQNLEILEGEKAEFVCTISKESFEVQW 14373

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2

 Score =  180 bits (457), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 223/494 (45%), Gaps = 37/494 (7%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
           P F  + K        + TL  ++V  P P + W  + +P++       +   D++    
Sbjct: 9   PRFLTRPKAFVVSVGKDATLSCQIVGNPTPHVSWEKDRQPVEAGARFRLAQDGDVYR--- 65

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN---TGKPEKPSILEPLHDVSITEGE 129
            +TI  +   + G Y   A+N  GEA   + ++V+   T   + P  L     + + EG 
Sbjct: 66  -LTILDLALGDSGQYVCRARNAIGEAFAAVGLRVDSEGTCAEQAPHFLLRPTSIRVREGA 124

Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTHTLTLIQCSTKDKGRYSVK 184
            A    +VGG P P V W KDG+ +        ++     +  L +     +D G Y V+
Sbjct: 125 DATFRCRVGGSPQPAVSWSKDGRRLGPPDAPHVRVEEHGESSALRIRSARPRDGGTYEVR 184

Query: 185 VTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL----DTLQVNTGKPEKPSILE 240
             N  G+  +AA L VD     E    P +    +++ L    + ++     P  P    
Sbjct: 185 AENPLGSASAAAALVVD--SDAEVAGPPGTSTATLLAHLQQRREAMRAEGIPPSPPGA-- 240

Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--RQIT--SEKNTHTLTLIQCS 296
                ++TEG+ A LS  V GEP P+  W KDG+L+ +  R +    E+    L ++ C 
Sbjct: 241 GTRTCTVTEGKHARLSCFVTGEPKPETVWKKDGQLVTEGRRHVVYEDEQENFVLKILFCK 300

Query: 297 TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD 356
             D+G Y+   +N  G   S+  + V +    F K+L DLEV+E+E+A  + EV     +
Sbjct: 301 QSDRGLYTCTASNLVGQTYSSVLVVVREPTVPFKKRLQDLEVREKESATFQCEVAQPATE 360

Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD-QETSAELNVV--- 412
             WFK+   +  S K  IE++GT R+L +RN+S  D+  Y C   +   T AEL+V    
Sbjct: 361 AAWFKEETRLWASAKYDIEEEGTERRLTVRNVSADDDAVYICETTEGSRTVAELSVQGNL 420

Query: 413 --ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
             +LP + +V   D  +       F +EL   +  V+W ++ +E+     V ++ +G   
Sbjct: 421 TRKLPRKTAVRTGDTAI-------FWVELAVPEGPVRWLRNQEEMVAGGRVAITAEGTCH 473

Query: 471 KLIIFSAGLEDAGE 484
            L IF   LED GE
Sbjct: 474 TLTIFQCTLEDMGE 487

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3

 Score =  176 bits (445), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 143/518 (27%), Positives = 226/518 (43%), Gaps = 43/518 (8%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
           P F  + K        + TL  ++V  P P + W  + +P+        +   D++    
Sbjct: 10  PRFLTRPKAFVVSVGKDATLSCQIVGNPTPQVSWEKDQQPVAAGARFRLAQDGDLYR--- 66

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP---EKPSILEPLHDVSITEGE 129
            +TI  +   + G Y   A+N  GEA   + ++V+       + P  L     + + EG 
Sbjct: 67  -LTILDLALGDSGQYVCRARNAIGEAFAAVGLQVDAEAACAEQAPHFLLRPTSIRVREGS 125

Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTHTLTLIQCSTKDKGRYSVK 184
            A    +VGG P P V W KDG+ + +      ++        L +     +D G Y V+
Sbjct: 126 EATFRCRVGGSPRPAVSWSKDGRRLGEPDGPRVRVEELGEASALRIRAARPRDGGTYEVR 185

Query: 185 VTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN------TGKPEKPSI 238
             N  G   +AA L VD     ++ +T   P     + L  LQ         G P  P  
Sbjct: 186 AENPLGAASAAAALVVD----SDAADTASRPGTSTAALLAHLQRRREAMRAEGAPASPPS 241

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--RQITSE--KNTHTLTLIQ 294
                  ++TEG+ A LS  V GEP P+  W KDG+L+ +  R +  E  +    L ++ 
Sbjct: 242 -TGTRTCTVTEGKHARLSCYVTGEPKPETVWKKDGQLVTEGRRHVVYEDAQENFVLKILF 300

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK 354
           C   D+G Y+   +N  G   S+  + V +    F K+L DLEV+E+E+A    EV    
Sbjct: 301 CKQSDRGLYTCTASNLVGQTYSSVLVVVREPAVPFKKRLQDLEVREKESATFLCEVPQPS 360

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD-QETSAELNVV- 412
            +  WFK+   +  S K  IE++GT R+L +RN+S  D+  Y C  P+   T AEL V  
Sbjct: 361 TEAAWFKEETRLWASAKYGIEEEGTERRLTVRNVSADDDAVYICETPEGSRTVAELAVQG 420

Query: 413 ----ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGK 468
               +LP + +V + D        A F +EL      V W ++ +E+     V +S +G 
Sbjct: 421 NLLRKLPRKTAVRVGDT-------AMFCVELAVPVGPVHWLRNQEEVVAGGRVAISAEGT 473

Query: 469 KQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
           +  L I    LED G+ +   GD    ++     V AP
Sbjct: 474 RHTLTISQCCLEDVGQVAFMAGDC---QTSTQFCVSAP 508

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Isoform 3 together with ANK1 isoform Mu17/Ank1.5 may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O75147|OBSL1_HUMAN Obscurin-like protein 1 OS=Homo sapiens GN=OBSL1 PE=1 SV=4

 Score =  152 bits (385), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 220/524 (41%), Gaps = 69/524 (13%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           +G PP F +  +PV     +E  L+  ++  P P ++W   G+ L  ++ + F      H
Sbjct: 8   QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 67

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV------------------NTGK 110
             +    + +    + GVY   A+N  GEA     V V                  + G 
Sbjct: 68  GLLLTAALPT----DAGVYVCRARNAAGEAYAAAAVTVLEPPASDPELQPAERPLPSPGS 123

Query: 111 PE-KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD------------R 157
            E  P  L       +  G   VL+ + GG P P + W KDG  + +            R
Sbjct: 124 GEGAPVFLTGPRSQWVLRGAEVVLTCRAGGLPEPTLYWEKDGMALDEVWDSSHFALQPGR 183

Query: 158 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
                  +  L ++     D G Y     N  G  ++ A L V  ++P ES   PP+ P 
Sbjct: 184 AEDGPGASLALRILAARLPDSGVYVCHARNAHGHAQAGALLQV--HQPPES---PPADPD 238

Query: 218 YVVSELDTLQVNTGKPEKPS-ILEPLHDVS----ITEGESAVLSVQVGGEPSPKVEWYKD 272
                           E P+ ++EPL        + EG+ A     V G+P P++EW+ +
Sbjct: 239 ----------------EAPAPVVEPLKCAPKTFWVNEGKHAKFRCYVMGKPEPEIEWHWE 282

Query: 273 GK-LIKDRQITSEKNT---HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE 328
           G+ L+ DR+    ++      L ++ C  KD+G Y     N  G   SA  L+V + +  
Sbjct: 283 GRPLLPDRRRLMYRDRDGGFVLKVLYCQAKDRGLYVCAARNSAGQTLSAVQLHVKEPRLR 342

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
           F + L D+E +E   AVLE +V + +    WF++ Q +   +K    ++GT+R+L+I  +
Sbjct: 343 FTRPLQDVEGREHGIAVLECKVPNSRIPTAWFREDQRLLPCRKYEQIEEGTVRRLIIHRL 402

Query: 389 SVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKW 448
              D+G Y C +  +  +     V+ P    +P + + V   E A   +E  +     +W
Sbjct: 403 KADDDGIYLCEMRGRVRTVANVTVKGPILKRLP-RKLDVLEGENAVLLVETLEAGVEGRW 461

Query: 449 YKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT 492
            +DG+E+     +  S  G    L++     EDAGE +  +G++
Sbjct: 462 SRDGEELPV---ICQSSSGHMHALVLPGVTREDAGEVTFSLGNS 502

Homo sapiens (taxid: 9606)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score =  143 bits (360), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 166/631 (26%), Positives = 261/631 (41%), Gaps = 105/631 (16%)

Query: 26   ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG 85
            E + ++L      +P P+L+W   G P+  TD +    +  + S    + I   +K +  
Sbjct: 2210 EGNLISLLCESSGIPPPNLIWKKKGSPVL-TDSM---GRVRILSGGRQLQISIAEKSDAA 2265

Query: 86   VYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKV 145
            +Y+ VA N  G AK +  ++V        S   P  ++ +T G+S  L  +V G P P V
Sbjct: 2266 LYSCVASNVAGTAKKEYNLQVYIRPTITNSGSHPT-EIIVTRGKSISLECEVQGIPPPTV 2324

Query: 146  EWYKDGK-LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
             W KDG  LIK + +      H L L      D GRY     N  G  +   +L+V    
Sbjct: 2325 TWMKDGHPLIKAKGVEILDEGHILQLKNIHVSDTGRYVCVAVNVAGMTDKKYDLSVH--- 2381

Query: 205  PKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS 264
                       PP ++        N   PE         ++S+ E  S  L+ +  G P 
Sbjct: 2382 ----------APPSIIG-------NHRSPE---------NISVVEKNSVSLTCEASGIPL 2415

Query: 265  PKVEWYKDG---KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
            P + W+KDG    L    +I S      L L+Q + +D G+Y+  V N  G       L+
Sbjct: 2416 PSITWFKDGWPVSLSNSVRILS--GGRMLRLMQTTMEDAGQYTCVVRNAAGEERKIFGLS 2473

Query: 322  V---DQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKK 377
            V        E    L+D++VKE+++  L  EVT +   ++ W KDGQ ++  +   I   
Sbjct: 2474 VLVPPHIVGE--NTLEDVKVKEKQSVTLTCEVTGNPVPEITWHKDGQPLQEDEAHHIISG 2531

Query: 378  GTIRKLLIRNISVHDEGEYTC--SLP--DQETSAELNVVELPPEISVPL----QDVKVSR 429
            G  R L I N+ V   G YTC  S P   +  S  LNV   P    V      +DV V  
Sbjct: 2532 G--RFLQITNVQVPHTGRYTCLASSPAGHKSRSFSLNVFVSPTIAGVGSDGNPEDVTVIL 2589

Query: 430  DEKASFEIE-LTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
            +   S   E  +   A + W+KDG  +  + N+ +   G+   L I +A  ++AG YSC 
Sbjct: 2590 NSPTSLVCEAYSYPPATITWFKDGTPLESNRNIRILPGGR--TLQILNAQEDNAGRYSCV 2647

Query: 489  VGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP 548
              +   +                       ++ H     ++V++  P I  K        
Sbjct: 2648 ATNEAGE-----------------------MIKH-----YEVKVYIPPIINKG------- 2672

Query: 549  TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 608
               L  PG +P      +E  +K   T+ L  +  A P+ S+ W+++ +PL S       
Sbjct: 2673 --DLWGPGLSP------KEVKIKVNNTLTLECEAYAIPSASLSWYKDGQPLKSDDHVNIA 2724

Query: 609  FDGENIILELKEADSETDAGDYKVVATNELG 639
             +G    L++KEA   +D G Y  VA+N  G
Sbjct: 2725 ANGHT--LQIKEAQI-SDTGRYTCVASNIAG 2752

Homo sapiens (taxid: 9606)

>sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-protein kinase OS=Rattus norvegicus GN=Speg PE=2 SV=2

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 158/592 (26%), Positives = 235/592 (39%), Gaps = 88/592 (14%)

Query: 112  EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTL 168
            E P    PL ++ +  G   +L   +   P P+V W KDG ++       I +E   HTL
Sbjct: 725  EAPVFEIPLQNMVVAPGADVLLKCIITANPPPQVSWKKDGSVLHSEGRLLIRAEGERHTL 784

Query: 169  TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL-- 226
             L +    D G Y+   TN+ G    A++L V P     +  +P S P  + S+ + L  
Sbjct: 785  LLREAQAADAGSYTATATNELGQASCASSLAVRP----GASTSPFSSP--ITSDEEYLSP 838

Query: 227  ------------QVNTGKPEK--------------PSILEPLHDVSITEGESAVLSVQVG 260
                        +  T KP                P+    L D S+ EG+  ++S++V 
Sbjct: 839  PEEFPEPGETWSRTPTMKPSPSQDRDSSDSSSKAPPTFKVSLMDQSVREGQDVIMSIRVQ 898

Query: 261  GEPSPKVEWYKDGKLIKDRQIT----SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
            GEP P V W ++ + ++  Q      +E     L ++     D G Y+ K  N+ G  + 
Sbjct: 899  GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 958

Query: 317  AANLNV----DQGKAEFIKKLDDLEVKERENAVLEVEVTSDK-ADVKWFKDGQEIKTS-K 370
             A L V    +      +  L D++V   E A+ E  V      +V W   G+ ++ +  
Sbjct: 959  EARLEVRAHPESRSLAVLAPLQDVDVGAGEMALFECLVAGPADVEVDWLCRGRLLQPALL 1018

Query: 371  KVTIEKKGTIRKLLIRNISVHDEGEYTCSLP----DQETSAELNVV-ELPPEISVPLQDV 425
            K  +   G   KLL+ ++   D G YTC L     +   SA L V   L P  +  L+DV
Sbjct: 1019 KCKMHFDGRKCKLLLTSVHEDDSGVYTCKLSTVKDELTCSARLTVRPSLAPLFTRLLEDV 1078

Query: 426  KVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGE 484
            +V     A  + +++      V W   G  +  SEN+ L  DG    L I   G ED G 
Sbjct: 1079 EVLEGRAARLDCKISGTPPPSVTWTHFGHPVNESENLRLRQDGGLHSLHIARVGSEDEGL 1138

Query: 485  YSCRVGDT-GDKESKATLTVEAPAVEF------LTKLPSVTLVPHLGDATFQVELSSPDI 537
            Y     +T G     A L VE P          L K+PS+   P  GD      LS PD 
Sbjct: 1139 YEVSATNTHGQAHCSAQLYVEEPRTAASGPSSKLEKMPSIPEEPEHGDLE---RLSIPD- 1194

Query: 538  QVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK 597
                   F+ P             ++  E    KE     L  +V   P P+I WF N  
Sbjct: 1195 -------FLRP-------------LQDLEVGLAKE---AMLECQVTGLPYPTISWFHNGH 1231

Query: 598  PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
             + SS  +R +    +I   +  A     AG YK V  N+LG A   A + V
Sbjct: 1232 RIQSSDDRR-MTQYRDIHRLVFPAVGPQHAGVYKSVIANKLGKAACYAHLYV 1282

Isoform 2 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 189/749 (25%), Positives = 291/749 (38%), Gaps = 149/749 (19%)

Query: 11   IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            +PP+   +   +    N  VTLE +  AVP P L W  +G PL+    +  S        
Sbjct: 2103 MPPSILGEELNMSVVVNESVTLECQSHAVPPPVLRWQKDGRPLEPHPGIRLSADK----- 2157

Query: 71   VSIVTIKSIKKREEGVYTVVAKNREG--EAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
             +++ +      + G YT  A N+ G  E   ++ V V    P K    EP + +++TEG
Sbjct: 2158 -ALLEVDRAAVWDAGHYTCEAINQAGRSEKHFNLHVWVPPAFPSK----EP-YTLTVTEG 2211

Query: 129  ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT---HTLTLIQCSTKDKGRYSVKV 185
            ++A LS    G P PK+ W KDG+ +     + E+       L L Q  +  +G Y+ + 
Sbjct: 2212 QTARLSCDCQGIPFPKISWRKDGQPLPGEGDSLEQVLAVGRLLYLGQAQSAQEGTYTCEC 2271

Query: 186  TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
            +N  GT     +L V               PP V                  + EPL  V
Sbjct: 2272 SNAAGTSSQEQSLEV-------------LVPPQVT----------------GLWEPLTTV 2302

Query: 246  SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYS 304
            S+ +  +  L+    G+P P V W +DG+ +  +  +  +   H+L + +      G YS
Sbjct: 2303 SVIQDGNTTLACNATGKPLPVVTWQRDGQPVSVEPGLRLQNQNHSLHVERAQASHAGGYS 2362

Query: 305  VKVTNKEGTVESAANLNV-----DQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA-DVK 358
                N  G  E    L+V       G ++    L ++      +  L  E     A  V+
Sbjct: 2363 CVAENTAGRAERRFALSVLAPPHLTGDSD---SLTNVTATLHGSFTLLCEAAGVPAPTVQ 2419

Query: 359  WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV---VELP 415
            WF++GQ I   +   +   G + K+        D G Y+C   ++   A  N    V +P
Sbjct: 2420 WFQEGQPISPREGTYLLAGGWMLKM--TQAQEQDRGLYSCLASNEAGEARRNFSVEVLVP 2477

Query: 416  PEI-SVPLQDV-KVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
            P I +  L++V KV   + A  E   T      V W+KDG+ +   +   +S DG    L
Sbjct: 2478 PSIENEDLEEVIKVPEGQTAQLECNATGHPPPKVTWFKDGQSLTVEDPYEMSPDGA--FL 2535

Query: 473  IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
             I  A L +AG YSC   +   +++K T                                
Sbjct: 2536 WIPQANLSNAGHYSCIASNAVGEKTKHT-------------------------------- 2563

Query: 533  SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
                     L++ +VPT  LG P +        EE TV     I L+ +  A P+P+I W
Sbjct: 2564 --------QLSVLVVPTI-LGVPEK-----NANEEVTVTINNPISLICEALAFPSPNITW 2609

Query: 593  FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
             ++  P  +S K  ++  G +  L++  A  E DAG Y  V TNELG AT    V V + 
Sbjct: 2610 MKDGSPFEAS-KNIQLLPGTH-GLQILNAQKE-DAGQYTCVVTNELGEATKNYHVEVLI- 2665

Query: 653  KVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDL 712
                PP               +I       EV V+               EV  K    L
Sbjct: 2666 ----PP---------------SISKDDPLGEVSVK---------------EVKTKVNSSL 2691

Query: 713  KIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
             +E    A PPP   W  +G  + PS R+
Sbjct: 2692 TLECECWATPPPSISWYKDGRPVTPSHRL 2720

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	785
195336800	4635	GM14147 [Drosophila sechellia] gi|194128	0.769	0.130	0.345	1e-105
158285443	15844	AGAP007563-PA [Anopheles gambiae str. PE	0.845	0.041	0.328	3e-98
157109548	4604	myosin light chain kinase [Aedes aegypti	0.847	0.144	0.317	4e-95
328725467	3009	PREDICTED: titin-like [Acyrthosiphon pis	0.844	0.220	0.319	6e-94
345496574	2329	PREDICTED: titin-like [Nasonia vitripenn	0.850	0.286	0.329	3e-93
194746960	7663	GF24939 [Drosophila ananassae] gi|190623	0.859	0.088	0.328	6e-90
307204651	7323	Titin [Harpegnathos saltator]	0.833	0.089	0.327	7e-90
442629655	18031	sallimus, isoform X [Drosophila melanoga	0.843	0.036	0.326	1e-89
442629649	15953	sallimus, isoform U [Drosophila melanoga	0.843	0.041	0.326	1e-89
442629657	10625	sallimus, isoform Y [Drosophila melanoga	0.843	0.062	0.326	2e-89

>gi|195336800|ref|XP_002035021.1| GM14147 [Drosophila sechellia] gi|194128114|gb|EDW50157.1| GM14147 [Drosophila sechellia]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 272/787 (34%), Positives = 387/787 (49%), Gaps = 183/787 (23%)

Query: 4    LADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVF 61
            LADILEGIPPTFSKK K  Y +EN+ V LE RLVAVPEPD++W +NGE +  +E   V  
Sbjct: 3185 LADILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDDEEIKNVRI 3244

Query: 62   SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLH 121
              +SDMH Y S+V I  +KK +EG Y V+A NREGEA++ I +KV T   E P ILEPL 
Sbjct: 3245 VTESDMHMYCSVVHISKVKKSQEGTYEVIATNREGEARLPITLKVRTTDKEAPQILEPLR 3304

Query: 122  DVSITEGESAVLSVQ----------------------------------------VGGEP 141
            ++ I EGES VLS Q                                        V G P
Sbjct: 3305 NMVIREGESVVLSTQIVGNPPLQSLLASNAEPPLFVERFEEQNVPQKGEIRLPAKVSGNP 3364

Query: 142  SPKVEW-YKDGKLIKDRQITSEKNTHTLTLI---QCSTKDKGRYSVKVTNKEGTVESAAN 197
             P+V+W + +  L    +I    +   + LI        D G Y    +N  G     A 
Sbjct: 3365 VPEVQWLFNNTPLFPSERIQQVYDGENIELIIKDANPETDSGDYKCIASNPIGKTSHGAR 3424

Query: 198  LNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSV 257
                                 V+ E+D +   T K +K   +E +  +++    S V++ 
Sbjct: 3425 ---------------------VIVEVDEVTF-TKKLKKTITIEEVQSLTLECETSHVVTT 3462

Query: 258  QVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 314
            +          W+ +GK +     R +  +  TH L +   + +D G Y+ KV  +E   
Sbjct: 3463 K----------WFFNGKELSGMDHRVVVEDGKTHKLVIRNTNLRDSGTYTCKVKKQE--- 3509

Query: 315  ESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEI-KTSKKVT 373
             + + + V Q K +FIK L+D EV E++ A+L+VE+T++  +V W+KDG++I + +K V 
Sbjct: 3510 -TQSTVEVLQRKPDFIKVLEDYEVTEKDTAILDVELTTEATEVTWYKDGEKITQENKNVE 3568

Query: 374  IEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKA 433
              K G  R+L+IR+ ++HDEG+YTC +  QE S EL V+ELPPEI  PL DV V++ E A
Sbjct: 3569 FIKDGKARRLVIRDATIHDEGQYTCKIEGQECSCELVVIELPPEIVEPLNDVAVTKGENA 3628

Query: 434  SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
             FE+EL+KGDALVKW+K+GKEI F+E + L+IDGKKQ L I  A  ED GEYS +V   G
Sbjct: 3629 VFEVELSKGDALVKWFKNGKEIVFNERIQLAIDGKKQSLRIVKAKPEDVGEYSVQV---G 3685

Query: 494  DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG 553
            ++ SKA LT+E P V+F+ +LP +TL     DA F V+LS PD++V W        C  G
Sbjct: 3686 EQTSKAKLTIEEPLVDFVIRLPDITLATKTTDAEFTVQLSQPDVEVTW--------CKKG 3737

Query: 554  SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
             P +     E F E+TV+     RL+                            I D   
Sbjct: 3738 KPIKPNQKHEVFVERTVR-----RLV----------------------------IHDA-- 3762

Query: 614  IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
                     S+ DAG+   VA N + S+T        VE++  PP+ + D D+       
Sbjct: 3763 ---------SDEDAGEISCVAEN-VTSSTKLC-----VEELKLPPVITSDKDQT------ 3801

Query: 674  NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGT 733
                                          + VK+ +D+   V++  +P P+A WT    
Sbjct: 3802 ------------------------------IKVKENDDVTFSVKYTGVPTPEACWTTRKV 3831

Query: 734  VIVPSKR 740
            V+  SKR
Sbjct: 3832 VVPKSKR 3838

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285443|ref|XP_001687892.1| AGAP007563-PA [Anopheles gambiae str. PEST] gi|157019994|gb|EDO64541.1| AGAP007563-PA [Anopheles gambiae str. PEST]

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 258/786 (32%), Positives = 388/786 (49%), Gaps = 122/786 (15%)

Query: 1     ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
             ESSLADILEGIPPTFS+K K  Y +  S+V LE RLVAVPEPD+LWYYNGE ++  D V 
Sbjct: 14337 ESSLADILEGIPPTFSRKPKAQYVDAGSDVLLECRLVAVPEPDILWYYNGEEIESKDNVQ 14396

Query: 61    FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
                +SDMH Y ++V IK I K +EG Y VVA+NREGE+ +DI VKV TG  E P ILEPL
Sbjct: 14397 VVVESDMHMYCTVVHIKGIDKLQEGSYQVVARNREGESSLDIMVKVKTGVQEPPQILEPL 14456

Query: 121   HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 180
               ++I +GE+ +LS Q+ G P+P+V+W+K+G  + D    +++N +T+TL+  +  + G 
Sbjct: 14457 KSMTIRQGETVILSTQIVGNPAPEVQWFKNGVAL-DVPTQADRNMYTVTLVAPTHDNAGE 14515

Query: 181   YSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILE 240
             Y+V+  N  G+VE++A L VD                         + N G P+ P  LE
Sbjct: 14516 YTVRAKNAAGSVETSAFLTVD-------------------------ESNVGNPQAPLFLE 14550

Query: 241   PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHTLTLIQCS 296
                + S+ +G +  L  +V G P P++ W ++   +    + +Q    +N   L     S
Sbjct: 14551 RFEEQSVPQGGTIKLPARVTGNPVPEILWLRNNNTLLPSKRVKQAYDGENIELLINNADS 14610

Query: 297   TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSDKA 355
              +D G Y    +N  G     A + V+  K  F KKL   + V+E  +  LE E TS   
Sbjct: 14611 EQDSGNYKCIASNTIGKASHGARVTVEVDKVTFTKKLKKTITVEESRSVTLECE-TSHTV 14669

Query: 356   DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELP 415
               KWF +G+E+       I ++G + KL I+N +++D G Y C++ DQ+T   L V+E  
Sbjct: 14670 STKWFHNGKELSGMDHRMIVQEGKVHKLNIKNPTINDTGVYRCTVKDQQTECSLTVIEAK 14729

Query: 416   PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQKLII 474
             PE    L+DV+    E A  E+E+T   A V WYK+G+++   +     +  GK + L +
Sbjct: 14730 PEFLRKLEDVETKEKEHAVLEVEITSETADVTWYKEGRKLVDTTGKYEFAKKGKSRVLFV 14789

Query: 475   FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
              +  + D GEY+C +    D+E  A ++V     E ++    VT V    DA F++EL+ 
Sbjct: 14790 RNTSVHDEGEYTCAL---ADQECSAEVSVIELPPEIISAPRDVT-VARGEDAIFELELTK 14845

Query: 535   PDIQVKW------------LNLFI------------------VPTCPLGSP-GQAPL--- 560
              D  V+W            + L I                    TC +G    +A L   
Sbjct: 14846 GDALVRWYRNEEELSFNGHVQLTIDGKRQTLKINKTVDADGGEYTCVVGEQRAKARLTVE 14905

Query: 561   -----FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
                  F+ R  E T+  +    + A V+ S +  +VW+RN+K + +S K   + D    I
Sbjct: 14906 KPVVDFVRRLPEVTLTTRDNDAVFA-VELSESADVVWYRNSKAITASSKYELVVD--KCI 14962

Query: 616   LELKEADS-ETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
              +L   +S E D  +Y    +N    A   +++ V++ KV  P I               
Sbjct: 14963 RKLIVKNSVEDDENEYTCTVSN----AKTSSKLKVEIIKVA-PTIFE------------- 15004

Query: 675   IDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
              D  R  T                       ++K ED+   V+F A P P+AEW VN  V
Sbjct: 15005 -DGARTFT-----------------------IRKDEDVTFSVKFNATPKPEAEWRVNKRV 15040

Query: 735   IVPSKR 740
             I+PS +
Sbjct: 15041 IIPSAK 15046

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109548|ref|XP_001650719.1| myosin light chain kinase [Aedes aegypti] gi|108878983|gb|EAT43208.1| AAEL005319-PA [Aedes aegypti]

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 249/785 (31%), Positives = 388/785 (49%), Gaps = 120/785 (15%)

Query: 1    ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
            ESSLADILEGIPPTFS+K K  Y +  S+V LE RLVA+PEPD+ W+YNG  +     + 
Sbjct: 3080 ESSLADILEGIPPTFSRKPKAQYVDVGSDVLLECRLVAIPEPDIHWFYNGTEITTKGNID 3139

Query: 61   FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
               +SDMH Y ++V I++I K++EG Y VVA+NREGE+ +DI VKV TG  E P ILEPL
Sbjct: 3140 VVVESDMHMYCTVVQIRNIDKKQEGSYQVVARNREGESALDITVKVKTGVLEPPQILEPL 3199

Query: 121  HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 180
              +SI +GE+ +LS Q+ G P+P+V+W+K+G+++K     ++KN +T+TL+  + ++ G 
Sbjct: 3200 KSMSIRQGETVMLSTQIVGNPTPEVQWFKNGEVLK-TPTQADKNMYTVTLLSPTHENAGE 3258

Query: 181  YSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILE 240
            Y+VK  N  GTVE+ A L VD                         + N G P+ P  LE
Sbjct: 3259 YTVKAKNAAGTVETTAFLTVD-------------------------ESNVGNPQAPLFLE 3293

Query: 241  PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQC---S 296
               + S+ +G +  L  +V G P P++ W ++   L+  +++    +   + L      S
Sbjct: 3294 RFEEQSVPQGGTIKLPAKVSGNPVPEILWLRNNNTLLTSKKVKQAYDGQNIELTISNADS 3353

Query: 297  TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSDKA 355
             +D G Y    +N  G     A + V+  +  F+KKL   + V+E ++  LE E TS   
Sbjct: 3354 EQDSGNYKCIASNTVGKASHGARVTVEVDRVTFVKKLKKTVTVEESKSVTLECE-TSHTV 3412

Query: 356  DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELP 415
              KWF +G+E+       I ++G + KL+I+N ++ D G Y C++ DQ T   L V+E  
Sbjct: 3413 STKWFHNGKEMSGMDHRVIVQEGKVHKLVIKNPTIKDTGMYQCTVKDQVTECSLTVLEAK 3472

Query: 416  PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSE-NVTLSIDGKKQKLII 474
            PE    ++DV+    + A  E+E+T   A V WYK+GK+I   +     S  GK + L++
Sbjct: 3473 PEFIRKMEDVETKEKQNAVLEVEITSETADVVWYKEGKKIVEEKGKYEFSKKGKTRSLLV 3532

Query: 475  FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
             S  + D GEY+C +    D+E  A + V     E +T L  VT V    +A F +EL+ 
Sbjct: 3533 RSTSVHDEGEYTCAL---ADQECSAEVVVIELPPEIITPLKDVT-VARGENAVFDIELTK 3588

Query: 535  PDIQVKWL---------------------NLFIVPT---------CPLGSP-------GQ 557
             D  V+W                       L I+ T         C +G          +
Sbjct: 3589 GDALVRWYRDDTELSFNGHYQLTIDGKRQTLKIIKTVDEDAGVYKCVVGDQLSTAKLTVE 3648

Query: 558  APL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
             PL  F++R  + T+  K T  +   V+ S +  + W++N+K + +S K   I D +   
Sbjct: 3649 RPLVDFVKRLPDVTIATKQTDAVFV-VELSESAEVTWYKNSKKIKASSKYELIADKKVRK 3707

Query: 616  LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
            L +K   +E D  +Y    T  + +    +++ V+V KV   P    D  R +       
Sbjct: 3708 LIVKNV-TEDDEDEY----TCTIANVKTSSKLKVEVIKVA--PTIFDDGSRTYT------ 3754

Query: 676  DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
                                          ++K +D+   V+F A P P +EW VN  ++
Sbjct: 3755 ------------------------------IRKEDDVTFNVKFNATPKPDSEWYVNEKLV 3784

Query: 736  VPSKR 740
            +PS R
Sbjct: 3785 IPSPR 3789

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725467|ref|XP_001944283.2| PREDICTED: titin-like [Acyrthosiphon pisum]

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 252/789 (31%), Positives = 395/789 (50%), Gaps = 126/789 (15%)

Query: 1    ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
            ESSLADILEGIPPTFS+K K   A E+S+VT+E RLVAVPEPD+ W+YNG+ +  TD + 
Sbjct: 1498 ESSLADILEGIPPTFSRKPKATCASEHSDVTIECRLVAVPEPDIFWHYNGKEISITDSIK 1557

Query: 61   FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
             +  SDMH YVS + I  + K +EGVY+V+A+NREGEAKMD+ +KV TG PEKP ILEPL
Sbjct: 1558 VNTYSDMHFYVSCIKINDVLKTQEGVYSVIARNREGEAKMDLVLKVKTGLPEKPQILEPL 1617

Query: 121  HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-RQITSEKNTHTLTLIQCSTKDKG 179
            +D++I EGE+AVLS Q+ GEP P VEW K+ K I D + + ++   H+LT+   + +D  
Sbjct: 1618 YDITINEGETAVLSTQISGEPQPMVEWLKNSKKITDIKTVVTKDGVHSLTIDNPTPRDSA 1677

Query: 180  RYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL 239
            +Y+V  +NK G  ++   L V+        E P                    P+ P  +
Sbjct: 1678 KYTVIASNKLGNAQTMCFLAVE--------ELP-------------------GPQAPLFI 1710

Query: 240  EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHTLTLIQC 295
            E   + ++ E  +  L  +V G P P V W+++ K +    K +++   +N     +   
Sbjct: 1711 ERFQEQTVKEKGTITLIAKVTGNPVPIVSWFRNNKPLLASSKKKEVFDGENIVLEIVNAD 1770

Query: 296  STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA 355
            S +D G Y    +N  GT    A ++VD    +F + L D+EV E+++  LE E TS   
Sbjct: 1771 SEEDAGDYKCVASNTFGTATHGARVSVDVPLVKFTRPLTDVEVDEKQSIYLECE-TSHTV 1829

Query: 356  DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELP 415
              KW  +G+++       + ++G   +L+I+  S+ D G+YTC + DQ TS+ + V ++ 
Sbjct: 1830 STKWQLNGKDLTGMDHRELHQEGRFHRLIIKKSSILDSGKYTCLVKDQITSSTVVVHDVK 1889

Query: 416  PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI--AFSENVTLSIDGKKQKLI 473
             E    L+DV+V  ++ A  E+E++     V W+K+G+ +    +  V    +G+ +KLI
Sbjct: 1890 AEFVKKLEDVEVKENDCAIMEVEVSSETVNVTWHKNGEMLTDGMNNKVFFEKEGQIRKLI 1949

Query: 474  IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT-FQVEL 532
            I S  + D GEY+C +   G++E  A + V   A + + KL    +    G+   F++EL
Sbjct: 1950 IRSISVHDDGEYTCSL---GEQECTAEINVIELAPQIIKKLKDQKVA--TGEQVLFEIEL 2004

Query: 533  SSPDIQVKW--------LN-------------LFIV----------------PTCPLGSP 555
            +  D  VKW        LN             L IV                 TC     
Sbjct: 2005 TKGDALVKWTKDGKELQLNNNVRLTIDGKRQKLEIVKATKTDTGVYGCQVHEQTCTAKLT 2064

Query: 556  GQAPL--FIERFEEKTVKEKGT-IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
             + P   F+++  + T+  +G+ I+L  ++     P + W R+ K +  S K   I +G 
Sbjct: 2065 VEEPRASFVKKLPDITLAVQGSDIKLTVELSKPDVP-VKWLRSGKVIKESDKYEIISEGA 2123

Query: 613  NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
               L +K+  ++ D  +Y   A N         ++ V+V K   P IN++          
Sbjct: 2124 VHTLIIKKPTTD-DEAEYICTAVN----VKTSTKLKVEV-KEEAPKINNL---------- 2167

Query: 673  DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG 732
                                        P E  +K GEDL ++V F + P P  EW +NG
Sbjct: 2168 ----------------------------PKEYRLKNGEDLNVDVTFTSTPLPTVEWFING 2199

Query: 733  TVIVPSKRV 741
            +V++ + RV
Sbjct: 2200 SVLIKTNRV 2208

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496574|ref|XP_003427758.1| PREDICTED: titin-like [Nasonia vitripennis]

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 259/786 (32%), Positives = 378/786 (48%), Gaps = 118/786 (15%)

Query: 1    ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
            ESSLADILEGIPPTFSK+ K    +E  +V +E RLVAVPEP++ W Y  + +   D V+
Sbjct: 1098 ESSLADILEGIPPTFSKQPKAKCVKEGEDVIIECRLVAVPEPEITWVYENKKITSKDNVI 1157

Query: 61   FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
             + +SDMH Y S++ I  + K++EG YT++AKNREGEA +++P+KV TG  E P ILEPL
Sbjct: 1158 VATESDMHMYCSVIKITKVLKQQEGKYTIIAKNREGEAIIEMPLKVQTGNQEPPEILEPL 1217

Query: 121  HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 180
               ++ EGE+ VLS Q+ G PSPK+ W+K+G+ ++      + N +TLTLIQ    D G 
Sbjct: 1218 KPFAVREGETVVLSTQIVGNPSPKITWFKEGQTLRGSMPKKDGNINTLTLIQPRIADSGE 1277

Query: 181  YSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILE 240
            YSV   N+ GT E+ A L V+                         ++ +G PE P   E
Sbjct: 1278 YSVIAKNELGTAETKATLTVE-------------------------EIPSGAPEPPLFTE 1312

Query: 241  PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTL---IQCS 296
               ++++ E  +  L  +V G P P+V W ++ K L K   IT   +   ++L      S
Sbjct: 1313 RFQELTVPEKGTFKLIAKVTGNPVPEVTWLRNNKPLDKSPNITESYDGENISLEIRNANS 1372

Query: 297  TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV-TSDKA 355
              D G Y     N  G     A + VD  K  F KKL+  +  + E   LE+   TS   
Sbjct: 1373 EVDAGDYKCLAVNPVGKTSHGAKITVDVDKVMFTKKLERRKTID-EYKCLELTCETSHTV 1431

Query: 356  DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELP 415
               W+ + +EI       + ++G I KL+I+ IS  DEG Y C++ +Q+T  ++ V    
Sbjct: 1432 STTWWHNDKEISGMDHREVIQEGKIHKLVIKRISQTDEGTYKCTVKNQKTFCDVTVKASK 1491

Query: 416  PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQKLII 474
            PE    LQD +V+  E+A  E+E+T   A V W+KDG  +   +E V    DG  +KL+I
Sbjct: 1492 PEFVKKLQDFEVTEREEAILEVEITSQIADVSWFKDGVPLTPTTEKVEFIKDGTLRKLLI 1551

Query: 475  FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
             S  ++D GEY+C +    D+E  A +T+     E +TK+  VT+      ATF++EL+ 
Sbjct: 1552 RSTSIQDEGEYTCAL---VDQECTAEVTIVELPPEIITKMQDVTIA-EGEKATFEIELTK 1607

Query: 535  PDIQVKW------------LNLFI------------------VPTCPLGSPGQAPL---- 560
             D  V+W            + L I                  V +C +G    A      
Sbjct: 1608 GDALVRWFKNDQELQFSEHIQLSIDGKRQKLKIYNSKIEDTGVYSCQVGEQTSAAKLTVE 1667

Query: 561  -----FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
                 FI+R  E T+             + P   + W R  + + +SPK     DG    
Sbjct: 1668 EPGVEFIKRLPEVTLVPLNEDAAFEIELSKPNIPVKWLRKGQEIHNSPKYIITDDGPKKK 1727

Query: 616  LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
            L +K+   E DA +Y V+ATN    +       + VE V  PP  S             +
Sbjct: 1728 LVVKKCTVE-DALEYSVIATNVKSYS------KLKVEVVEAPPTIS-------------M 1767

Query: 676  DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
            DSP+                          VK G+D+++ V F A P P  EWTVNG VI
Sbjct: 1768 DSPKVYK-----------------------VKTGDDVEMSVNFTAAPKPADEWTVNGCVI 1804

Query: 736  VPSKRV 741
              SK++
Sbjct: 1805 QKSKKL 1810

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746960|ref|XP_001955922.1| GF24939 [Drosophila ananassae] gi|190623204|gb|EDV38728.1| GF24939 [Drosophila ananassae]

 Score =  338 bits (868), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 258/786 (32%), Positives = 381/786 (48%), Gaps = 111/786 (14%)

Query: 4    LADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVF 61
            LADILEGIPPTFSKK K  Y +EN+ V LE RLVAVPEPD++W +NGE +  +E   V  
Sbjct: 6145 LADILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDEEEIKNVRI 6204

Query: 62   SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLH 121
              +SDMH Y S+V I  +KK +EG Y V+A NREGEA++ I +KV T   E P ILEPL 
Sbjct: 6205 VTESDMHMYCSVVHITKVKKSQEGTYEVIATNREGEARLPITLKVRTADKEAPQILEPLR 6264

Query: 122  DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
            ++ I EGES VLS Q+ G P PKV WYKDGK +K  +  S+K+ HTLTLI     +KG Y
Sbjct: 6265 NMVIREGESVVLSTQIVGNPPPKVTWYKDGKPVKGAK--SDKDLHTLTLITPKKPEKGEY 6322

Query: 182  SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
            +VK  N  G+VE+ ANL ++            +   YV   L   +  +G  E P  +E 
Sbjct: 6323 TVKAVNPLGSVETTANLTIE-----------GTTNGYVFV-LHFSEATSGNAEPPLFVER 6370

Query: 242  LHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGKLIKDRQITSEKNTHTLTLIQCSTK-- 298
              + ++ +     L  +V G P P+V+W + +  L    +I    +   + LI  +    
Sbjct: 6371 FEEQNVPQKGEIRLPAKVSGNPVPEVQWLFNNAPLFPSERIQQVYDGENIELIIKNANPE 6430

Query: 299  -DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSDKAD 356
             D G Y    +N  G     A + V+  +  F KKL   + ++E ++  LE E TS    
Sbjct: 6431 TDSGDYKCIASNPVGKTSHGARVIVEVDEVTFTKKLKKTITIEEVQSLTLECE-TSHVVS 6489

Query: 357  VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
             KWF +G+E+       + + G   KL+IRN ++ D G Y C +  QET + + V++  P
Sbjct: 6490 TKWFFNGKELTGMDHRVVVEDGKTHKLVIRNTNLRDTGTYVCKVKKQETQSTVEVLQRKP 6549

Query: 417  EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSI--DGKKQKLII 474
            +    L+D +V+  + A  ++ELT     V WYKDG++I   EN ++    DGK ++L+I
Sbjct: 6550 DFIKVLEDYEVNEKDTAILDVELTTEGTEVTWYKDGEKIT-EENKSVEFIKDGKARRLVI 6608

Query: 475  FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
             +  + D GEY+C++   G + S   + +E P  E +  L  V+ V    +A F VELS 
Sbjct: 6609 RNTTIHDEGEYTCKIE--GQECSCELVVIELPP-EIVKPLKDVS-VTKGENAVFTVELSK 6664

Query: 535  PDIQVKWL---------------------NLFIVPTCP---------LGSPG-------Q 557
             D  VKW                      +L IV   P         +G          +
Sbjct: 6665 GDALVKWFKNGEEITFTDRLQLSIDGKKQSLRIVKAKPEDVGEYSIRVGDQTSNAKLTVE 6724

Query: 558  APL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
             PL  F+ R  + T+  K T        + P   + W +  KP+  +PK     +G    
Sbjct: 6725 EPLVDFVIRLPDVTLVTKSTDAEFTVQLSQPDVEVTWCKKGKPIKPNPKHEVFVEGTVRR 6784

Query: 616  LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
            L + +A  E DAG+   VA N     T  +++   VE++  PP+ + D D+         
Sbjct: 6785 LVIHDATDE-DAGEISCVAEN----VTSSSKLC--VEEIKLPPVITSDKDQT-------- 6829

Query: 676  DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
                                        + VK+ +D    V++  +P P+A WT    VI
Sbjct: 6830 ----------------------------IKVKENDDATFTVKYTGVPTPEAVWTTKKVVI 6861

Query: 736  VPSKRV 741
              SKR+
Sbjct: 6862 PKSKRI 6867

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204651|gb|EFN83273.1| Titin [Harpegnathos saltator]

 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 263/802 (32%), Positives = 374/802 (46%), Gaps = 148/802 (18%)

Query: 1    ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
            ESSLADILEGIPPTFS+K K  Y +E  +V LE RLVAVPEP++ WY+    +     ++
Sbjct: 5780 ESSLADILEGIPPTFSRKPKAKYVDEGDDVLLECRLVAVPEPEITWYFKDTQVVSQQNII 5839

Query: 61   FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
             + +SDMH Y SIV I  ++K++EG Y +VAKNREGEA +DIPVKV TGK E P ILEPL
Sbjct: 5840 VATESDMHMYCSIVKISKVQKKQEGRYKIVAKNREGEATIDIPVKVKTGKSEPPEILEPL 5899

Query: 121  HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 180
                I EGE+ VLS Q+ G PSPK+ WYKDGK IK  Q   +++ +TL+LIQ    D G 
Sbjct: 5900 QSYVIKEGETVVLSTQIVGNPSPKITWYKDGKPIKGLQPKQDRHVNTLSLIQPKVADTGE 5959

Query: 181  YSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILE 240
            YSV   N  G  E+ A L V+                         +V +G PE P   +
Sbjct: 5960 YSVVAVNDIGKAETRATLTVE-------------------------KVPSGAPEPPLFTK 5994

Query: 241  PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTL-IQC--S 296
               +V + E  +  L  +V G P P+V W ++ K L K   IT   +   + L I+   S
Sbjct: 5995 RFQEVIVPEKGTFKLVAKVTGNPVPEVIWLRNNKPLEKSPNITESYDGENILLEIRNADS 6054

Query: 297  TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV-TSDKA 355
              D G Y     N  G     A + VD  K  F +KL   EV   E   LE+   TS   
Sbjct: 6055 ETDAGDYKCVANNPVGKASHGAKVTVDVAKVSFTRKLQS-EVTVDEYKTLELNCETSHTV 6113

Query: 356  DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELP 415
               W+ + +EI       + ++G + KL+I+     D G Y C++ +Q TS+ + V    
Sbjct: 6114 STVWWHNDKEISGMDHREVIQEGRVHKLVIKKSGPADAGTYKCTVKNQVTSSNVTVRATK 6173

Query: 416  PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSEN-VTLSIDGKKQKLII 474
            PE    LQD +V   + A  E+E+T   A V W KD + +  S+  +    DG  +KL+I
Sbjct: 6174 PEFVRKLQDFEVKERDVAILEVEITSQTADVTWRKDSETLTPSKGKLEFVKDGTVRKLLI 6233

Query: 475  FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
             SA + D GEY C + D   +E  A +TV     E + K+  V ++     ATF++EL+ 
Sbjct: 6234 RSASVHDEGEYICALPD---EECAAEVTVVELPPEIIGKMQDV-IIARGERATFEIELTK 6289

Query: 535  PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
             D  ++                                                   WF+
Sbjct: 6290 GDALIR---------------------------------------------------WFK 6298

Query: 595  NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD---- 650
            + + L  S   R   DG+   L++ + + E DAG Y    + ++G+ T  AR+TV+    
Sbjct: 6299 DGQELQFSEHVRLSIDGKKQKLKIYDTEME-DAGIY----SCQVGNQTSSARLTVEEPEV 6353

Query: 651  -----VEKVGRPPINS-----ID----------------IDRNHVHHLDNID-------- 676
                 +  V   P+N+     I+                IDR        ID        
Sbjct: 6354 DFIKKLPDVTLVPLNTDATFLIELSRADVPVTWLRKGEIIDRTQTSKYSIIDEGNVKKLI 6413

Query: 677  -----------------SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFK 719
                             + + S+ + VE  +ET P I+P  P +    KG+D+ I V+FK
Sbjct: 6414 VKKCTTEDIAEYTAAVANVKTSSRLKVEI-IETPPKINPDTPRKYKTTKGDDIDIVVKFK 6472

Query: 720  ALPPPKAEWTVNGTVIVPSKRV 741
            A P P  EWTV+G V+  SKR+
Sbjct: 6473 ATPTPSDEWTVDGRVVKKSKRI 6494

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629655|ref|NP_001261312.1| sallimus, isoform X [Drosophila melanogaster] gi|440215180|gb|AGB94007.1| sallimus, isoform X [Drosophila melanogaster]

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 256/784 (32%), Positives = 375/784 (47%), Gaps = 122/784 (15%)

Query: 4     LADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVF 61
             LADILEGIPPTFSKK K  Y +EN+ V LE RLVAVPEPD++W +NGE +  +E   V  
Sbjct: 16526 LADILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDEEEIKNVRI 16585

Query: 62    SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLH 121
               +SDMH Y S+V I  +KK +EG Y V+A NREGEA++ I +KV T   E P ILEPL 
Sbjct: 16586 VTESDMHMYCSVVHISKVKKSQEGTYEVIATNREGEARLPITLKVRTTDKEAPQILEPLR 16645

Query: 122   DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
             ++ I EGES VLS Q+ G P PKV WYKDGK +K+ +  S+K+ HTLTLI     +KG Y
Sbjct: 16646 NMVIREGESVVLSTQIVGNPPPKVTWYKDGKPVKNAK--SDKDLHTLTLITPQKSEKGEY 16703

Query: 182   SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
             +VK  N  G+VE+ ANL ++  EP                         G  E P  +E 
Sbjct: 16704 TVKAVNPLGSVETTANLTIE--EPA-----------------------GGNAEPPLFVER 16738

Query: 242   LHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGKLIKDRQITSEKNTHTLTLIQCSTK-- 298
               + ++ +     L  +V G P P+V+W + +  L    +I    +   + LI       
Sbjct: 16739 FEEQNVPQKGEIRLPAKVSGNPVPEVQWLFNNTPLFPSERIQQVYDGENIELIIKDANPE 16798

Query: 299   -DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSDKAD 356
              D G Y    +N  G     A + V+  +  F KKL   + ++E ++  LE E TS    
Sbjct: 16799 TDSGDYKCIASNPIGKTSHGARVIVEVDEVTFTKKLKKTITIEEVQSLTLECE-TSHVVT 16857

Query: 357   VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
              KWF +G+E+       + + G   KL+IRN ++ D G YTC +  QET + + V++  P
Sbjct: 16858 TKWFFNGKELSGMDHRVVVEDGKTHKLVIRNTNLRDSGTYTCKVKKQETQSTVEVLQRKP 16917

Query: 417   EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQKLIIF 475
             +    L+D +V+  + A  ++ELT     V WYKDG++I   ++NV    DGK ++L+I 
Sbjct: 16918 DFIKVLEDYEVTEKDTAILDVELTTEATEVTWYKDGEKITPENKNVEFIKDGKARRLVIR 16977

Query: 476   SAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
                + D G+Y+C++   G + S   + +E P  E +  L  V  V    +A F+VELS  
Sbjct: 16978 DVTIHDEGQYTCKI--EGQECSCELVVIELPP-EIVEPLNDVA-VTKGENAVFEVELSKG 17033

Query: 536   DIQVKWL---------------------NLFIVPTCP---------LGSPG-------QA 558
             D  VKW                      +L IV   P         +G          + 
Sbjct: 17034 DALVKWFKNGKEIVFNERIQLAIDGKKQSLRIVKAKPEDVGEYSVQVGEQTSKAKLTVEE 17093

Query: 559   PL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
             PL  F+ R  + T+  K T        + P   + W +  KP+  + K     +G    L
Sbjct: 17094 PLVDFVIRLPDITLATKTTDAEFTVQLSQPDVEVTWCKKGKPIKPNQKHEVFVEGTVRRL 17153

Query: 617   ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
              + +A S+ DAG+   VA N   S        + VE++  PP+ + D D+          
Sbjct: 17154 VIHDA-SDEDAGEISCVAENVTSST------KLCVEELKLPPVITSDKDQT--------- 17197

Query: 677   SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                                        + VK+ +D+   V++  +P P+A WT    VI 
Sbjct: 17198 ---------------------------IKVKENDDVTFTVKYTGVPTPEACWTTRKVVIP 17230

Query: 737   PSKR 740
              SKR
Sbjct: 17231 KSKR 17234

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629649|ref|NP_001261309.1| sallimus, isoform U [Drosophila melanogaster] gi|440215177|gb|AGB94004.1| sallimus, isoform U [Drosophila melanogaster]

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 256/784 (32%), Positives = 375/784 (47%), Gaps = 122/784 (15%)

Query: 4     LADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVF 61
             LADILEGIPPTFSKK K  Y +EN+ V LE RLVAVPEPD++W +NGE +  +E   V  
Sbjct: 14448 LADILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDEEEIKNVRI 14507

Query: 62    SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLH 121
               +SDMH Y S+V I  +KK +EG Y V+A NREGEA++ I +KV T   E P ILEPL 
Sbjct: 14508 VTESDMHMYCSVVHISKVKKSQEGTYEVIATNREGEARLPITLKVRTTDKEAPQILEPLR 14567

Query: 122   DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
             ++ I EGES VLS Q+ G P PKV WYKDGK +K+ +  S+K+ HTLTLI     +KG Y
Sbjct: 14568 NMVIREGESVVLSTQIVGNPPPKVTWYKDGKPVKNAK--SDKDLHTLTLITPQKSEKGEY 14625

Query: 182   SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
             +VK  N  G+VE+ ANL ++  EP                         G  E P  +E 
Sbjct: 14626 TVKAVNPLGSVETTANLTIE--EPA-----------------------GGNAEPPLFVER 14660

Query: 242   LHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGKLIKDRQITSEKNTHTLTLIQCSTK-- 298
               + ++ +     L  +V G P P+V+W + +  L    +I    +   + LI       
Sbjct: 14661 FEEQNVPQKGEIRLPAKVSGNPVPEVQWLFNNTPLFPSERIQQVYDGENIELIIKDANPE 14720

Query: 299   -DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSDKAD 356
              D G Y    +N  G     A + V+  +  F KKL   + ++E ++  LE E TS    
Sbjct: 14721 TDSGDYKCIASNPIGKTSHGARVIVEVDEVTFTKKLKKTITIEEVQSLTLECE-TSHVVT 14779

Query: 357   VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
              KWF +G+E+       + + G   KL+IRN ++ D G YTC +  QET + + V++  P
Sbjct: 14780 TKWFFNGKELSGMDHRVVVEDGKTHKLVIRNTNLRDSGTYTCKVKKQETQSTVEVLQRKP 14839

Query: 417   EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQKLIIF 475
             +    L+D +V+  + A  ++ELT     V WYKDG++I   ++NV    DGK ++L+I 
Sbjct: 14840 DFIKVLEDYEVTEKDTAILDVELTTEATEVTWYKDGEKITPENKNVEFIKDGKARRLVIR 14899

Query: 476   SAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
                + D G+Y+C++   G + S   + +E P  E +  L  V  V    +A F+VELS  
Sbjct: 14900 DVTIHDEGQYTCKI--EGQECSCELVVIELPP-EIVEPLNDVA-VTKGENAVFEVELSKG 14955

Query: 536   DIQVKWL---------------------NLFIVPTCP--LGSPG--------------QA 558
             D  VKW                      +L IV   P  +G                 + 
Sbjct: 14956 DALVKWFKNGKEIVFNERIQLAIDGKKQSLRIVKAKPEDVGEYSVQVGEQTSKAKLTVEE 15015

Query: 559   PL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
             PL  F+ R  + T+  K T        + P   + W +  KP+  + K     +G    L
Sbjct: 15016 PLVDFVIRLPDITLATKTTDAEFTVQLSQPDVEVTWCKKGKPIKPNQKHEVFVEGTVRRL 15075

Query: 617   ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
              + +A S+ DAG+   VA N   S        + VE++  PP+ + D D+          
Sbjct: 15076 VIHDA-SDEDAGEISCVAENVTSST------KLCVEELKLPPVITSDKDQT--------- 15119

Query: 677   SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                                        + VK+ +D+   V++  +P P+A WT    VI 
Sbjct: 15120 ---------------------------IKVKENDDVTFTVKYTGVPTPEACWTTRKVVIP 15152

Query: 737   PSKR 740
              SKR
Sbjct: 15153 KSKR 15156

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629657|ref|NP_001261313.1| sallimus, isoform Y [Drosophila melanogaster] gi|440215181|gb|AGB94008.1| sallimus, isoform Y [Drosophila melanogaster]

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 256/784 (32%), Positives = 374/784 (47%), Gaps = 122/784 (15%)

Query: 4    LADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVF 61
            LADILEGIPPTFSKK K  Y +EN+ V LE RLVAVPEPD++W +NGE +  +E   V  
Sbjct: 9120 LADILEGIPPTFSKKPKAQYVDENTNVILECRLVAVPEPDIVWTFNGEDIDEEEIKNVRI 9179

Query: 62   SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLH 121
              +SDMH Y S+V I  +KK +EG Y V+A NREGEA++ I +KV T   E P ILEPL 
Sbjct: 9180 VTESDMHMYCSVVHISKVKKSQEGTYEVIATNREGEARLPITLKVRTTDKEAPQILEPLR 9239

Query: 122  DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
            ++ I EGES VLS Q+ G P PKV WYKDGK +K+ +  S+K+ HTLTLI     +KG Y
Sbjct: 9240 NMVIREGESVVLSTQIVGNPPPKVTWYKDGKPVKNAK--SDKDLHTLTLITPQKSEKGEY 9297

Query: 182  SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
            +VK  N  G+VE+ ANL ++  EP                         G  E P  +E 
Sbjct: 9298 TVKAVNPLGSVETTANLTIE--EPA-----------------------GGNAEPPLFVER 9332

Query: 242  LHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGKLIKDRQITSEKNTHTLTLI---QCST 297
              + ++ +     L  +V G P P+V+W + +  L    +I    +   + LI       
Sbjct: 9333 FEEQNVPQKGEIRLPAKVSGNPVPEVQWLFNNTPLFPSERIQQVYDGENIELIIKDANPE 9392

Query: 298  KDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSDKAD 356
             D G Y    +N  G     A + V+  +  F KKL   + ++E ++  LE E TS    
Sbjct: 9393 TDSGDYKCIASNPIGKTSHGARVIVEVDEVTFTKKLKKTITIEEVQSLTLECE-TSHVVT 9451

Query: 357  VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
             KWF +G+E+       + + G   KL+IRN ++ D G YTC +  QET + + V++  P
Sbjct: 9452 TKWFFNGKELSGMDHRVVVEDGKTHKLVIRNTNLRDSGTYTCKVKKQETQSTVEVLQRKP 9511

Query: 417  EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQKLIIF 475
            +    L+D +V+  + A  ++ELT     V WYKDG++I   ++NV    DGK ++L+I 
Sbjct: 9512 DFIKVLEDYEVTEKDTAILDVELTTEATEVTWYKDGEKITPENKNVEFIKDGKARRLVIR 9571

Query: 476  SAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
               + D G+Y+C++   G + S   + +E P  E +  L  V  V    +A F+VELS  
Sbjct: 9572 DVTIHDEGQYTCKI--EGQECSCELVVIELPP-EIVEPLNDVA-VTKGENAVFEVELSKG 9627

Query: 536  DIQVKWL---------------------NLFIVPTCP--LGSPG--------------QA 558
            D  VKW                      +L IV   P  +G                 + 
Sbjct: 9628 DALVKWFKNGKEIVFNERIQLAIDGKKQSLRIVKAKPEDVGEYSVQVGEQTSKAKLTVEE 9687

Query: 559  PL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
            PL  F+ R  + T+  K T        + P   + W +  KP+  + K     +G    L
Sbjct: 9688 PLVDFVIRLPDITLATKTTDAEFTVQLSQPDVEVTWCKKGKPIKPNQKHEVFVEGTVRRL 9747

Query: 617  ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
             + +A  E DAG+   VA N   S        + VE++  PP+ + D D+          
Sbjct: 9748 VIHDASDE-DAGEISCVAENVTSST------KLCVEELKLPPVITSDKDQT--------- 9791

Query: 677  SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                                       + VK+ +D+   V++  +P P+A WT    VI 
Sbjct: 9792 ---------------------------IKVKENDDVTFTVKYTGVPTPEACWTTRKVVIP 9824

Query: 737  PSKR 740
             SKR
Sbjct: 9825 KSKR 9828

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	785
FB|FBgn0086906	18	sls "sallimus" [Drosophila mel	0.394	17.22	0.432	3.4e-121
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.380	8.542	0.371	4e-61
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.495	11.44	0.330	3.8e-59
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.463	10.4	0.351	2.8e-61
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.379	8.764	0.389	1.2e-62
ZFIN|ZDB-GENE-030113-2	32	ttna "titin a" [Danio rerio (t	0.373	9.156	0.362	1.4e-62
ZFIN|ZDB-GENE-030616-413	28	ttnb "titin b" [Danio rerio (t	0.387	10.85	0.371	1.5e-61
WB|WBGene00006820	8081	unc-89 [Caenorhabditis elegans	0.780	0.075	0.294	8.5e-50
UNIPROTKB|E1BT53	6635	Gga.50987 "Uncharacterized pro	0.594	0.070	0.275	1.5e-45
MGI|MGI:2681862	8891	Obscn "obscurin, cytoskeletal	0.589	0.052	0.272	6.3e-50

FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)]

 Score = 658 (236.7 bits), Expect = 3.4e-121, Sum P(3) = 3.4e-121
 Identities = 143/331 (43%), Positives = 205/331 (61%)

Query:   245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKG 301
             ++I E +S  L  +     + K  W+ +GK +     R +  +  TH L +   + +D G
Sbjct: 16928 ITIEEVQSLTLECETSHVVTTK--WFFNGKELSGMDHRVVVEDGKTHKLVIRNTNLRDSG 16985

Query:   302 RYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFK 361
              Y+ KV  +E    + + + V Q K +FIK L+D EV E++ A+L+VE+T++  +V W+K
Sbjct: 16986 TYTCKVKKQE----TQSTVEVLQRKPDFIKVLEDYEVTEKDTAILDVELTTEATEVTWYK 17041

Query:   362 DGQEIKT-SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISV 420
             DG++I   +K V   K G  R+L+IR++++HDEG+YTC +  QE S EL V+ELPPEI  
Sbjct: 17042 DGEKITPENKNVEFIKDGKARRLVIRDVTIHDEGQYTCKIEGQECSCELVVIELPPEIVE 17101

Query:   421 PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE 480
             PL DV V++ E A FE+EL+KGDALVKW+K+GKEI F+E + L+IDGKKQ L I  A  E
Sbjct: 17102 PLNDVAVTKGENAVFEVELSKGDALVKWFKNGKEIVFNERIQLAIDGKKQSLRIVKAKPE 17161

Query:   481 DAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVK 540
             D GEYS +VG+   + SKA LTVE P V+F+ +LP +TL     DA F V+LS PD++V 
Sbjct: 17162 DVGEYSVQVGE---QTSKAKLTVEEPLVDFVIRLPDITLATKTTDAEFTVQLSQPDVEVT 17218

Query:   541 WLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
             W        C  G P +     E F E TV+
Sbjct: 17219 W--------CKKGKPIKPNQKHEVFVEGTVR 17241

GO:0030017 "sarcomere" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0004687 "myosin light chain kinase activity" evidence=ISS

GO:0003779 "actin binding" evidence=IMP;IDA

GO:0030018 "Z disc" evidence=IMP;IDA

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IGI;IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0007498 "mesoderm development" evidence=IEP

GO:0007517 "muscle organ development" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 453 (164.5 bits), Expect = 4.0e-61, Sum P(4) = 4.0e-61
 Identities = 117/315 (37%), Positives = 161/315 (51%)

Query:   232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT---SEKNTH 288
             KP    +L PL DV++T GE+A    ++  E  P VEWY  GK ++  +     SE   H
Sbjct: 13942 KPRVIGLLRPLKDVTVTAGETATFDCELSYEDIP-VEWYLKGKKLEPSEKVVPRSEGKVH 14000

Query:   289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
             TLTL     +D G   V++  K+   ++ ANL V +   EF K L+D  V+E   AVLE 
Sbjct: 14001 TLTLRDVKLEDAGE--VQLRAKD--FKTHANLFVKEPPVEFTKPLEDQTVEEEATAVLEC 14056

Query:   349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE 408
             EV+ + A VKWFK+G EI  SKK  I   G +RKL+I   +  D   YTC   D +TS  
Sbjct: 14057 EVSRENAKVKWFKNGTEILKSKKYEIVADGRVRKLIIHGCTPEDIKTYTCDAKDFKTSCN 14116

Query:   409 LNVVELPPEISV--PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
             LNVV  PP +    PL D++V   E A FE E+++ +A V+W+KDG EI   +   +   
Sbjct: 14117 LNVV--PPHVEFLRPLTDLQVKEKEMARFECEISRENAKVQWFKDGAEIKKGKKYDIISK 14174

Query:   467 GKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
             G  + L+I    L+D  EYSC V       +   LTV A    F   L ++  V      
Sbjct: 14175 GAVRILVINKCLLDDEAEYSCEVKTA---RTSGMLTVLAEEAVFTKNLGNIE-VSETDTI 14230

Query:   527 TFQVELSSPDIQVKW 541
                 E+S P  +V W
Sbjct: 14231 KLVCEVSKPGAEVTW 14245

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 451 (163.8 bits), Expect = 3.8e-59, Sum P(4) = 3.8e-59
 Identities = 140/424 (33%), Positives = 203/424 (47%)

Query:   232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT-SEKNTH 288
             KP    +L PL D+++T GE+A    ++  E  P VEWY  GK ++  D+ +  SE   H
Sbjct: 13133 KPRVIGLLRPLKDITVTAGETATFDCELSYEDIP-VEWYLRGKKLEPSDKVVMRSEGRVH 13191

Query:   289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
             TLTL     +D G   V++  K+   ++ A L V +   EF K L+D  V+E   AVLE 
Sbjct: 13192 TLTLRDVKLEDAGE--VQLVAKD--FKTQAKLFVKEPPVEFTKPLEDQTVEEEATAVLEC 13247

Query:   349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE 408
             EV+ + A VKWFK+G EI  SKK  I   G +RKL+I   +  D   YTC   D +TS  
Sbjct: 13248 EVSRENAKVKWFKNGTEILKSKKYEIVADGRVRKLIIHGCTPEDIKTYTCDAKDFKTSCN 13307

Query:   409 LNVVELPPEISV--PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
             LNVV  PP +    PL D++V   E A FE E+++ +A V W+KDG EI   +   +   
Sbjct: 13308 LNVV--PPHVEFLRPLTDLRVKEKEMARFECEISRENAKVHWFKDGAEIKKGKKYDIISK 13365

Query:   467 GKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV-EAPAVEFLTKLPSVTLVPHLGD 525
             G  + L+I    L+D  EYSC V       +   LTV E  AV F   L ++  V     
Sbjct: 13366 GAVRILVINKCLLDDEAEYSCEVRTA---RTSGMLTVLEEEAV-FTKNLANIE-VSETDT 13420

Query:   526 ATFQVELSSPDIQVKWL--NLFIVPT--CPLGSPGQAPLFIERFEEKTVKEKGTI----- 576
                  E+S P  +V W   +  I+ T    + + G+  + I   +   +++ G       
Sbjct: 13421 VKLVCEVSKPGAEVTWYKGDEEIIETGRYEILTDGRKRILI--IQNAHLEDAGNYNCRLP 13478

Query:   577 --RLMAKVKASP-APSIVWFRNNKPLLSSPKKREI--FDGENIILELKEADSETDAGD-Y 630
               R   KVK    A   +    N  +L   K   +     EN  ++ K  D   ++GD Y
Sbjct: 13479 SSRTDGKVKVHELAAEFISKPQNLEILEGEKAEFVCSISKENFEVQWKRDDKTLESGDKY 13538

Query:   631 KVVA 634
              V+A
Sbjct: 13539 DVIA 13542

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 462 (167.7 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
 Identities = 138/393 (35%), Positives = 199/393 (50%)

Query:   232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT-SEKNTH 288
             KP    +L PL DV++T GE+A    ++  E  P VEWY  GK ++  D+ +T SE   H
Sbjct: 13981 KPRVIGLLRPLKDVTVTAGETATFDCELSYEDIP-VEWYLKGKKLEPNDKVVTRSEGRVH 14039

Query:   289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
             TLTL     +D G   V++T K+   ++ ANL V +   EF K L+D  V+E   AVLE 
Sbjct: 14040 TLTLRDVKLEDAGE--VQLTAKD--FKTQANLFVKEPPVEFTKPLEDQTVEEEATAVLEC 14095

Query:   349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE 408
             EV+ + A VKWFK+G EI  SKK  I   G +RKL+I   +  D   YTC   D +TS  
Sbjct: 14096 EVSRENAKVKWFKNGTEILKSKKYEIVADGRVRKLIIHGCTPEDIKTYTCDAKDFKTSCN 14155

Query:   409 LNVVELPPEISV--PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
             LNVV  PP +    PL D++V   E A FE E++K +  V+W+KDG EI   +   +   
Sbjct: 14156 LNVV--PPHVEFLRPLTDLQVKEKETARFECEISKENEKVQWFKDGAEIKKGKKYDIISK 14213

Query:   467 GKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV-EAPAVEFLTKLPSVTLVPHLGD 525
             G  + L+I    L D  EYSC V       +   LTV E  AV F   L ++ +    GD
Sbjct: 14214 GAVRILVINKCLLNDEAEYSCEVRTA---RTSGMLTVLEEEAV-FTKNLANLEVSE--GD 14267

Query:   526 ATFQV-ELSSPDIQVKWL--NLFIVPT--CPLGSPGQAPLFIERFEEKTVKEKGTIRLMA 580
                 V E+S P  +V W   +  I+ T    + + G+  + I   +   +++ G+     
Sbjct: 14268 TIKLVCEVSKPGAEVIWYKGDEEIIETGRFEILTDGRKRILI--IQNAQLEDAGSYN--C 14323

Query:   581 KVKASPAPSIVWFRN-NKPLLSSPKKREIFDGE 612
             ++ +S   S V         +S P+  EI +GE
Sbjct: 14324 RLPSSRTDSKVKVHELAAEFISKPQNLEILEGE 14356

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 461 (167.3 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
 Identities = 123/316 (38%), Positives = 167/316 (52%)

Query:   232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT-SEKNTH 288
             KP    +L PL DV++T GE+A    ++  E  P VEWY  GK ++  D+ +  SE   H
Sbjct: 13119 KPRVIGLLRPLKDVTVTAGETATFDCELSYEDIP-VEWYLKGKKLEPSDKVVPRSEGKVH 13177

Query:   289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
             TLTL     +D G   V++T K+   ++ ANL V +   EF K L+D  V+E   AVLE 
Sbjct: 13178 TLTLRDVKLEDAGE--VQLTAKD--FKTHANLFVKEPPVEFTKPLEDQTVEEGATAVLEC 13233

Query:   349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE 408
             EV+ + A VKWFK+G EI  SKK  I   G +RKL+I + +  D   YTC   D +TS  
Sbjct: 13234 EVSRENAKVKWFKNGTEILKSKKYEIVADGRVRKLVIHDCTPEDIKTYTCDAKDFKTSCN 13293

Query:   409 LNVVELPPEISV--PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
             LNVV  PP +    PL D++V   E A FE EL++ +A VKW+KDG EI   +   +   
Sbjct: 13294 LNVV--PPHVEFLRPLTDLQVREKEMARFECELSRENAKVKWFKDGAEIKKGKKYDIISK 13351

Query:   467 GKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV-EAPAVEFLTKLPSVTLVPHLGD 525
             G  + L+I    L+D  EYSC V       +   LTV E  AV F   L ++  V     
Sbjct: 13352 GAVRILVINKCLLDDEAEYSCEVRTA---RTSGMLTVLEEEAV-FTKNLANIE-VSETDT 13406

Query:   526 ATFQVELSSPDIQVKW 541
                  E+S P  +V W
Sbjct: 13407 IKLVCEVSKPGAEVIW 13422

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)]

 Score = 447 (162.4 bits), Expect = 1.4e-62, Sum P(4) = 1.4e-62
 Identities = 112/309 (36%), Positives = 164/309 (53%)

Query:   238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT-SEKNTHTLTLIQ 294
             +L PL DV++T GE+A    ++  E  P VEW+  G  ++  DR +T +E  +HTLTL  
Sbjct: 11914 LLRPLKDVTVTAGETATFDCELSYEGIP-VEWFLGGTKLEPSDRVVTRAEGRSHTLTLRD 11972

Query:   295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK 354
                 + G   VK+T K+   +  A L V++   EF K L+D  V+E   A LE EV+ +K
Sbjct: 11973 VKLTEAGE--VKLTAKDFLTQ--AQLIVNEPPVEFTKPLEDQTVEEEATAELECEVSKEK 12028

Query:   355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL 414
             A+V+WF+DGQEI+ +KK  +   G  RKL+I + ++ D   YTC     +TSA LNV   
Sbjct: 12029 AEVRWFRDGQEIRKTKKYDMVADGCKRKLVIHDCTLDDSKTYTCDAKHFKTSAFLNVE-- 12086

Query:   415 PP--EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
             PP  E + PL DV+V   E A FE E+++  A V+W++DG EI   +   +  +G K+ L
Sbjct: 12087 PPYVEFTKPLHDVEVKEKESARFECEVSRESAKVRWFRDGNEIRKGKKYEMISEGVKRIL 12146

Query:   473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
             II  +  +D  EY C   D    +S   LTV      F   L ++             E+
Sbjct: 12147 IISKSVFDDEAEYEC---DARTSKSSGMLTVVEEEARFTKNLANIEGT-ETDSVKLICEV 12202

Query:   533 SSPDIQVKW 541
             S P  +V W
Sbjct: 12203 SKPSAEVTW 12211

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)]

 Score = 463 (168.0 bits), Expect = 1.5e-61, Sum P(4) = 1.5e-61
 Identities = 120/323 (37%), Positives = 173/323 (53%)

Query:   225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT 282
             T Q+   K     +L PL DV++T GE+A    ++  E  P VEW+     ++  DR +T
Sbjct:  7908 TAQLRV-KARTIGLLRPLRDVTVTAGETATFDCELSYEDIP-VEWFVGSTKMEPSDRVVT 7965

Query:   283 -SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKER 341
              +E   H+LTL      + G   VK+T K+   +  A L V++   EF K L+D  V+E 
Sbjct:  7966 RAEGRLHSLTLRDVIMTEAGE--VKLTAKDFVTQ--AKLTVNEPPVEFSKPLEDQTVEEE 8021

Query:   342 ENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
               A+LE E++ +KADVKWF+DGQEI+ +KK  +  +G IR+L+I++ S+ D   YTC   
Sbjct:  8022 ATAILECELSREKADVKWFRDGQEIRKTKKHEMVAEGRIRRLIIKDCSLDDSKTYTCDAK 8081

Query:   402 DQETSAELNVVELPP--EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSE 459
             + +TSA LNV   PP  E S PL DV+V   E A FE E+++  A V+W+KDG EI   +
Sbjct:  8082 EFKTSAFLNVE--PPFVEFSKPLHDVEVKEKESAKFECEVSRESAKVRWFKDGAEIRKGK 8139

Query:   460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
                +   G ++ LII  A  +D  EY C   D    +S   LTV      F   L +V  
Sbjct:  8140 KYEIIAKGLQRILIISKAVFDDEAEYEC---DARTSKSSGMLTVVEEEARFTKNLANVEG 8196

Query:   520 VPHLGDATFQV-ELSSPDIQVKW 541
                  D+   V E+S P  +V W
Sbjct:  8197 TET--DSIKMVCEVSKPSAEVTW 8217

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0014866 "skeletal myofibril assembly" evidence=IMP

WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)]

 Score = 528 (190.9 bits), Expect = 8.5e-50, Sum P(3) = 8.5e-50
 Identities = 204/692 (29%), Positives = 304/692 (43%)

Query:     1 ESSL-ADILEGIP-PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE 58
             ESS  A++ + +  PTF ++      + N   TL V +  VP+P + W  +G+P+Q    
Sbjct:  3272 ESSAEAEVTQSLEKPTFVRELVTTEVKINETATLSVTVKGVPDPSVEWLKDGQPVQTDSS 3331

Query:    59 VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILE 118
              V +      SY   +TIK  +  + G Y   A N  GEAK +    V       P  +E
Sbjct:  3332 HVIAKVEGSGSYS--ITIKDARLEDSGKYACRATNPAGEAKTEANFAV-VKNLVPPEFVE 3388

Query:   119 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDK 178
              L  + + E ES  LSV+V G P P VEW+KD     D  I+ + N H   +IQ  T   
Sbjct:  3389 KLSPLEVKEKESTTLSVKVVGTPEPSVEWFKD-----DTPISID-NVH---VIQKQTA-V 3438

Query:   179 GRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXL-DTLQVNTGKPEKPS 237
             G +S+       T+  A   +V                      + D++      PE   
Sbjct:  3439 GSFSL-------TINDARQGDVGIYSCRARNEAGEALTTANFGIIRDSIP-----PEFTQ 3486

Query:   238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNT----HTLTL 292
              L PL    + E E+  L V V G P P VEW+KD K I  D      K+     HTLT+
Sbjct:  3487 KLRPLE---VREQETLDLKVTVIGTPVPNVEWFKDDKPINIDNSHIFAKDEGSGHHTLTI 3543

Query:   293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQG-KAE-FIKKLDDLEVKERENAVLEVEV 350
              Q   +D G Y+ K TN+ G  ++ AN+ V +  +A  F++ L   EV++ + A L V V
Sbjct:  3544 KQARGEDVGVYTCKATNEAGEAKTTANMAVQEEIEAPLFVQGLKPYEVEQGKPAELVVRV 3603

Query:   351 TSD-KADVKWFKDGQEIKTSKKVTIEKKGT--IRKLLIRNISVHDEGEYTCSLPDQ---- 403
                 + +VKWFKDG  I    +  IEKKG      L+I++ +  D G+YTC   ++    
Sbjct:  3604 EGKPEPEVKWFKDGVPIAIDNQHVIEKKGENGSHTLVIKDTNNADFGKYTCQATNKAGKD 3663

Query:   404 ETSAELNVV----------ELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG 452
             ET  EL +           E+ P    PL++      +    E ++ K     +K++K+ 
Sbjct:  3664 ETVGELKIPKYSFEKQTAEEVKPLFIEPLKETFAVEGDTVVLECKVNKESHPQIKFFKND 3723

Query:   453 KEIAFSENVTLSI--DGKKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAPAVE 509
             + +   +++ L +  DG   KL I +A  ED G Y C  V   G   + A L ++     
Sbjct:  3724 QPVEIGQHMQLEVLEDGNI-KLTIQNAKKEDVGAYRCEAVNVAGKANTNADLKIQ----- 3777

Query:   510 FLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT 569
             F  K+       H+ D + Q+E      Q + +          G  G AP F+E     T
Sbjct:  3778 FAAKVEE-----HVTDESGQLEEIG---QFETVGDTASSKTDTGR-G-APEFVELLRSCT 3827

Query:   570 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAG 628
             V EK    L  KVK  P P I W +  K +  S + R E  D   + L      ++ DAG
Sbjct:  3828 VTEKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTLTFDNV-TQADAG 3886

Query:   629 DYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
             +Y+  A NE GSA     + V +E  G P I+
Sbjct:  3887 EYRCEAENEYGSAWTEGPIIVTLE--GAPKID 3916

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0031430 "M band" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IPI

UNIPROTKB|E1BT53 Gga.50987 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 473 (171.6 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
 Identities = 135/490 (27%), Positives = 231/490 (47%)

Query:    13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
             P F  + K        + TL  +++  P P + W  +  P+Q       ++  D++  ++
Sbjct:    10 PRFLTRPKAFMVSVGKDATLSCQIIGNPIPVVSWEKDKLPIQSGGRFKTTEDGDLYQ-LT 68

Query:    73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEK-PSILEPLHDVSITEGESA 131
             I  + S++   + +        E  A + I V   T   E  P  ++    + +T GE A
Sbjct:    69 IYDL-SLEDSGQYICRAKNTIGEAFAAVSIKVGEETTVTESAPYFIQKPSSIKVTLGEDA 127

Query:   132 VLSVQVGGEPSPKVEWYKDGKLIKDR------QITSEKNTHTLTLIQCSTK-DKGRYSVK 184
             +   +V G P   V W KDG+ +++R      QI S   ++ LT IQC+   D G Y+ +
Sbjct:   128 MFKCKVQGSPPLSVNWEKDGRHLRNRADAGRFQIESAGESNALT-IQCTRLGDSGTYTCR 186

Query:   185 VTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVN----TGKPEKPSILE 240
               N  G+  ++A L V+                     L  LQ      T K  + ++  
Sbjct:   187 AENPIGSASASAALVVESLGSSNPGSHFDPSCGKTTSLLSHLQKRREEITTKGARNAMFG 246

Query:   241 PL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--RQITSE--KNTHTLTLIQC 295
              L    S+TEG+ A LS  V GEP P++ W KD ++I +  R +  E  +    L ++ C
Sbjct:   247 TLTRTCSVTEGKHAKLSCYVTGEPKPEIVWKKDNEVIVEGRRHVIYEDDQENFVLKILYC 306

Query:   296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA 355
                D G Y+   +N  G   S+  + V +    F +KL DLEV E+E+A  + EV     
Sbjct:   307 KQVDNGLYTCTASNLAGQTYSSVLVTVKEPPIPFKEKLKDLEVWEKESATFQCEVPVPST 366

Query:   356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD-QETSAELNVVEL 414
             +  WFK+  +++ SKK  IE++GT R+L ++N++  D+  Y C + +   T AEL+V   
Sbjct:   367 ETSWFKEETKLRQSKKYNIEEEGTYRRLTVQNVTADDDAVYICEMKEGSRTIAELSVQGN 426

Query:   415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
               +  +P +   VS ++ A+F +EL      + W K+ +E+  S+ +++   GK+  +II
Sbjct:   427 IIK-KLP-RKTAVSVNDTATFCVELDNECQNICWLKNTEEVKPSDRISIIRSGKQHTMII 484

Query:   475 FSAGLEDAGE 484
                 +EDAGE
Sbjct:   485 RECTMEDAGE 494

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

MGI|MGI:2681862 Obscn "obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF" [Mus musculus (taxid:10090)]

 Score = 484 (175.4 bits), Expect = 6.3e-50, Sum P(3) = 6.3e-50
 Identities = 133/488 (27%), Positives = 217/488 (44%)

Query:    13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
             P F  + K        + TL  ++V  P P + W  + +P++       +   D++    
Sbjct:     9 PRFLTRPKAFVVSVGKDATLSCQIVGNPTPHVSWEKDRQPVEAGARFRLAQDGDVYR--- 65

Query:    73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN---TGKPEKPSILEPLHDVSITEGE 129
              +TI  +   + G Y   A+N  GEA   + ++V+   T   + P  L     + + EG 
Sbjct:    66 -LTILDLALGDSGQYVCRARNAIGEAFAAVGLRVDSEGTCAEQAPHFLLRPTSIRVREGA 124

Query:   130 SAVLSVQVGGEPSPKVEWYKDGKLI--KDR---QITSEKNTHTLTLIQCSTKDKGRYSVK 184
              A    +VGG P P V W KDG+ +   D    ++     +  L +     +D G Y V+
Sbjct:   125 DATFRCRVGGSPQPAVSWSKDGRRLGPPDAPHVRVEEHGESSALRIRSARPRDGGTYEVR 184

Query:   185 VTNKEGTVESAANLNVDXXXXXXX--XXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPL 242
               N  G+  +AA L VD                        + ++     P  P      
Sbjct:   185 AENPLGSASAAAALVVDSDAEVAGPPGTSTATLLAHLQQRREAMRAEGIPPSPPGA--GT 242

Query:   243 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--RQIT--SEKNTHTLTLIQCSTK 298
                ++TEG+ A LS  V GEP P+  W KDG+L+ +  R +    E+    L ++ C   
Sbjct:   243 RTCTVTEGKHARLSCFVTGEPKPETVWKKDGQLVTEGRRHVVYEDEQENFVLKILFCKQS 302

Query:   299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVK 358
             D+G Y+   +N  G   S+  + V +    F K+L DLEV+E+E+A  + EV     +  
Sbjct:   303 DRGLYTCTASNLVGQTYSSVLVVVREPTVPFKKRLQDLEVREKESATFQCEVAQPATEAA 362

Query:   359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD-QETSAELNVV-ELPP 416
             WFK+   +  S K  IE++GT R+L +RN+S  D+  Y C   +   T AEL+V   L  
Sbjct:   363 WFKEETRLWASAKYDIEEEGTERRLTVRNVSADDDAVYICETTEGSRTVAELSVQGNLTR 422

Query:   417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
             ++  P +   V   + A F +EL   +  V+W ++ +E+     V ++ +G    L IF 
Sbjct:   423 KL--P-RKTAVRTGDTAIFWVELAVPEGPVRWLRNQEEMVAGGRVAITAEGTCHTLTIFQ 479

Query:   477 AGLEDAGE 484
               LED GE
Sbjct:   480 CTLEDMGE 487

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005863 "striated muscle myosin thick filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030017 "sarcomere" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030506 "ankyrin binding" evidence=ISO

GO:0031430 "M band" evidence=ISO;IDA

GO:0031432 "titin binding" evidence=ISO

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	785
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	9e-21
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	9e-21
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-15
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-13
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-12
smart00409	85	smart00409, IG, Immunoglobulin	3e-12
smart00409	85	smart00409, IG, Immunoglobulin	3e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-11
smart00409	85	smart00409, IG, Immunoglobulin	5e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-09
smart00409	85	smart00409, IG, Immunoglobulin	5e-09
smart00409	85	smart00409, IG, Immunoglobulin	5e-09
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-08
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-08
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	7e-07
smart00409	85	smart00409, IG, Immunoglobulin	7e-07
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-06
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	2e-06
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	2e-06
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	2e-06
cd05866	92	cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-lik	2e-06
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	3e-06
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	3e-06
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	4e-06
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-06
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	7e-06
cd05757	92	cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)	8e-06
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	9e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-05
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	1e-05
cd05860	101	cd05860, Ig4_SCFR, Fourth immunoglobulin (Ig)-like	1e-05
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	2e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-05
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	3e-05
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	3e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-05
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	4e-05
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	4e-05
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	4e-05
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	5e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-05
cd05855	79	cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-	5e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	7e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	7e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	7e-05
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	7e-05
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	7e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	8e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-04
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	1e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	2e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-04
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	4e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	4e-04
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	5e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	5e-04
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-04
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	6e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	6e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	6e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	6e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	6e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	6e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	6e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	6e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	6e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	6e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	6e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	6e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	7e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	8e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	8e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	8e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.001
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.001
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.001
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	0.001
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	0.001
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	0.001
cd05897	95	cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig	0.001
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	0.002
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	0.002
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	0.002
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.002
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.002
PRK15223	836	PRK15223, PRK15223, pilin outer membrane usher pro	0.002
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.003
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.003
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.003
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	0.003
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	0.003
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.003
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	0.003
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	0.003
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.003
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.003
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.004
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.004
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.004
cd05859	101	cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (I	0.004
PHA02826	227	PHA02826, PHA02826, IL-1 receptor-like protein; Pr	0.004
cd05865	96	cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-lik	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 86.9 bits (216), Expect = 9e-21
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DR-QITSEKNTHTLTL 170
           P   +   DV + EGESA  +  V G+P P V W+KDG+ ++  DR ++T E  T+TLT+
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                 D+G+Y+   TN  G  E++A L V
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 86.9 bits (216), Expect = 9e-21
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DR-QITSEKNTHTLTL 292
           P   +   DV + EGESA  +  V G+P P V W+KDG+ ++  DR ++T E  T+TLT+
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                 D+G+Y+   TN  G  E++A L V
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
           +F +K  D+EV+E E+A     VT D    V WFKDGQ +++S +  +  +G    L I 
Sbjct: 2   KFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTIS 61

Query: 387 NISVHDEGEYTC----SLPDQETSAELNV 411
           N+   DEG+YTC    S  + E SAEL V
Sbjct: 62  NVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 68.4 bits (168), Expect = 3e-14
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P F ++ ++  V+E  + R    V   P P++ WF++ +PL SS + +  ++G    L +
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
                + D G Y  VATN  G A   A +TV
Sbjct: 61  SNVQPD-DEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
           P F++K K V  +E         +   P+P + W+ +G+PL+ +D    + +   ++   
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT--- 57

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
            +TI +++  +EG YT VA N  GEA+    + V
Sbjct: 58  -LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
           P+ +   +DV+V   E A F   +T   D  V W+KDG+ +  S+   ++ +G    L I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTV 503
            +   +D G+Y+C      G+ E+ A LTV
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGK---LIKDR-QITSEKNTHTLTLIQCSTKD 177
            V++ EGES  LS +  G P P+V WYK G        R  ++   +T TLT+   + +D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 178 KGRYSVKVTNKEGTVESAANLNV 200
            G Y+   TN  G+  S   L V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGK---LIKDR-QITSEKNTHTLTLIQCSTKD 299
            V++ EGES  LS +  G P P+V WYK G        R  ++   +T TLT+   + +D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 300 KGRYSVKVTNKEGTVESAANLNV 322
            G Y+   TN  G+  S   L V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGK---LIKDR-QITSEKNTHTLTLIQCSTKD 177
            V++ EGES  LS +  G P P+V WYK G        R  ++   +T TLT+   + +D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 178 KGRYSVKVTNKEGTVESAANLNV 200
            G Y+   TN  G+  S   L V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGK---LIKDR-QITSEKNTHTLTLIQCSTKD 299
            V++ EGES  LS +  G P P+V WYK G        R  ++   +T TLT+   + +D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 300 KGRYSVKVTNKEGTVESAANLNV 322
            G Y+   TN  G+  S   L V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 59.1 bits (143), Expect = 5e-11
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNN-KPLLSSPKKREIFDGENIILELKEADSETDA 627
           TVKE  ++ L  +   SP P + W++   K L  S +      G    L +     E D+
Sbjct: 5   TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE-DS 63

Query: 628 GDYKVVATNELGSATHGARVTV 649
           G Y   ATN  GSA+ G  +TV
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 59.1 bits (143), Expect = 5e-11
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNN-KPLLSSPKKREIFDGENIILELKEADSETDA 627
           TVKE  ++ L  +   SP P + W++   K L  S +      G    L +     E D+
Sbjct: 5   TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE-DS 63

Query: 628 GDYKVVATNELGSATHGARVTV 649
           G Y   ATN  GSA+ G  +TV
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQE-IKTSKKVTIEKKGTIRKLLIRNISVHD 392
            + VKE E+  L  E +     +V W+K G + +  S + ++ + G+   L I N++  D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 393 EGEYTC----SLPDQETSAELNV 411
            G YTC    S     +   L V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 423 QDVKVSRDEKASFEIELT-KGDALVKWYKDG-KEIAFSENVTLSIDGKKQKLIIFSAGLE 480
             V V   E  +   E +      V WYK G K +A S   ++S  G    L I +   E
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 481 DAGEYSCRVGDT-GDKESKATLTV 503
           D+G Y+C   ++ G   S  TLTV
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQE-IKTSKKVTIEKKGTIRKLLIRNISVHD 392
            + VKE E+  L  E +     +V W+K G + +  S + ++ + G+   L I N++  D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 393 EGEYTC----SLPDQETSAELNV 411
            G YTC    S     +   L V
Sbjct: 63  SGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 423 QDVKVSRDEKASFEIELT-KGDALVKWYKDG-KEIAFSENVTLSIDGKKQKLIIFSAGLE 480
             V V   E  +   E +      V WYK G K +A S   ++S  G    L I +   E
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 481 DAGEYSCRVGDT-GDKESKATLTV 503
           D+G Y+C   ++ G   S  TLTV
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 133 LSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
           L V + G P+P V W KDGK +K     QI +  ++ +L +      D G+Y++ + N  
Sbjct: 4   LEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPA 63

Query: 190 GTVESAANLNV 200
           G   +  N+ V
Sbjct: 64  GEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 255 LSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 311
           L V + G P+P V W KDGK +K     QI +  ++ +L +      D G+Y++ + N  
Sbjct: 4   LEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPA 63

Query: 312 GTVESAANLNV 322
           G   +  N+ V
Sbjct: 64  GEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLI 171
           +IL     ++++EGESA  S  V GEP+P V W ++G++I   +  QITS +   T  + 
Sbjct: 5   TILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEIS 64

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANL 198
           +    D+G Y+V V N EG  E+   L
Sbjct: 65  KVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLI 293
           +IL     ++++EGESA  S  V GEP+P V W ++G++I   +  QITS +   T  + 
Sbjct: 5   TILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEIS 64

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANL 320
           +    D+G Y+V V N EG  E+   L
Sbjct: 65  KVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 21/69 (30%), Positives = 28/69 (40%)

Query: 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
          VTL       P P + W  NG+PL  +            S  S +TI ++   + G YT 
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 90 VAKNREGEA 98
          VA N  G  
Sbjct: 61 VASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
           EG+S  L+    G P P + W KDGK + +        + TLT+   S +D G Y+    
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGS-TLTIKSVSLEDSGLYTCVAE 59

Query: 187 NKEG 190
           N  G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 308
           EG+S  L+    G P P + W KDGK + +        + TLT+   S +D G Y+    
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGS-TLTIKSVSLEDSGLYTCVAE 59

Query: 309 NKEG 312
           N  G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 30  VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
           V LEV +   P P + W  +G+PL+ +  V    Q +  +  + + IK+ ++ + G YT+
Sbjct: 2   VRLEVPISGRPTPTVTWSKDGKPLKLSGRV----QIETTASSTSLVIKNAERSDSGKYTL 57

Query: 90  VAKNREGEAKMDIPVKV 106
             KN  GE    I VKV
Sbjct: 58  TLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)

Query: 26 ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG 85
          E   VTL       P P++ W  +G+PL E++  V S         S +TIKS+   + G
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG--------STLTIKSVSLEDSG 52

Query: 86 VYTVVAKNREG 96
          +YT VA+N  G
Sbjct: 53 LYTCVAENSAG 63

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQIT-------SEKNTHTLTLIQCSTKDKGRYSV 183
             L+    G P P + W K+GK +    +T       +   + TLT+   + +D G Y+ 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 184 KVTNKEGTVESAAN 197
             +N  GTV ++  
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 253 AVLSVQVGGEPSPKVEWYKDGKLIKDRQIT-------SEKNTHTLTLIQCSTKDKGRYSV 305
             L+    G P P + W K+GK +    +T       +   + TLT+   + +D G Y+ 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 306 KVTNKEGTVESAAN 319
             +N  GTV ++  
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
           P P I W +    L   P  R  F+  N  L++    SE D G+Y+  A+N LGSA H  
Sbjct: 11  PTPEISWIKIGGEL---PADRTKFENFNKTLKIDNV-SEEDDGEYRCTASNSLGSARHTI 66

Query: 646 RVTV 649
            VTV
Sbjct: 67  SVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 12  PPTFSKKTKPVYAEENS--EVTLEVRLVAVPEPDLLWYYNGEPLQETDE-VVFSDQSDMH 68
           PPT   +   V A  N    VTL       PEP + W  +GEP++  +E   F++     
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDG--- 57

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
              S +TI  + K +E  YT +A+N+ GE + +I +KV
Sbjct: 58  ---SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 20  KPVYAEENSEVTLEVRLVAVPEPDLLWYYNG-EPLQETDEVVFSDQSDMHSYVSIVTIKS 78
             V  +E   VTL       P P++ WY  G + L E+     S      +     TI +
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTL----TISN 57

Query: 79  IKKREEGVYTVVAKNREGEAKMDIPVKV 106
           +   + G YT  A N  G A     + V
Sbjct: 58  VTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 20  KPVYAEENSEVTLEVRLVAVPEPDLLWYYNG-EPLQETDEVVFSDQSDMHSYVSIVTIKS 78
             V  +E   VTL       P P++ WY  G + L E+     S      +     TI +
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTL----TISN 57

Query: 79  IKKREEGVYTVVAKNREGEAKMDIPVKV 106
           +   + G YT  A N  G A     + V
Sbjct: 58  VTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKV 632
           ++RL   +   P P++ W ++ KPL  S   R   +    +  L +K A+   D+G Y +
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSG--RVQIETTASSTSLVIKNAERS-DSGKYTL 57

Query: 633 VATNELGSATHGARVTV 649
              N  G  +    V V
Sbjct: 58  TLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 342 ENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
           ++  L      +   ++ W KDG+ +  S +       +   L I+++S+ D G YTC 
Sbjct: 3   QSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVA----SGSTLTIKSVSLEDSGLYTCV 57

Length = 63

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 133 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
           L V+V   P P+++WYK+GKLI ++  T +K+ H+LT+   + +D G Y+V +TNK
Sbjct: 3   LPVKVKAYPPPEIQWYKNGKLISEKNRT-KKSGHSLTIKDVTEEDAGNYTVVLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 255 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 310
           L V+V   P P+++WYK+GKLI ++  T +K+ H+LT+   + +D G Y+V +TNK
Sbjct: 3   LPVKVKAYPPPEIQWYKNGKLISEKNRT-KKSGHSLTIKDVTEEDAGNYTVVLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVA 634
           +RL  +V A P P I W +NN+ L  +  +  ++ D    I  L +  ++ DAG Y V A
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 635 TNELGSATHGARVTV 649
            NE G  +  AR+ V
Sbjct: 61  VNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIF 475
           ++S+ L  V++S  E   F          + WY   G++I  S+ V +  +G + +L I+
Sbjct: 2   QVSISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIY 61

Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
           +A +EDAG Y C+  D   +  +AT+ +E
Sbjct: 62  NANIEDAGIYRCQATDAKGQTQEATVVLE 90

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 92

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-RQITSEKNTH--TLTL 170
              ++  +   + EG +A +     G P PKVEW   G ++   R  T E       L L
Sbjct: 1   TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              +++ +   +    N  G    +  + V
Sbjct: 61  SNITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-RQITSEKNTH--TLTL 292
              ++  +   + EG +A +     G P PKVEW   G ++   R  T E       L L
Sbjct: 1   TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              +++ +   +    N  G    +  + V
Sbjct: 61  SNITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 30  VTLEVRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88
           V LE R+ A+P P + W  N E L   TD +  S   D    + ++ I++  K + G YT
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRI--SLYQDNCGRICLL-IQNANKEDAGWYT 57

Query: 89  VVAKNREG----EAKMDI 102
           V A N  G     A++D+
Sbjct: 58  VSAVNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 441 KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
                + W KDGK +  S     S       L I S  LED+G Y+C  
Sbjct: 14  NPVPNITWLKDGKPLPESNRFVAS----GSTLTIKSVSLEDSGLYTCVA 58

Length = 63

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 30  VTLEVRLVAVPEP-DLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVY 87
           + L V + A P P  + W Y+   L     E+V S+    + YVS + +  +K+ E G Y
Sbjct: 21  LNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTY 80

Query: 88  TVVAKNREGEAKMDIPVKVNT 108
           T +A N +    +   + VN 
Sbjct: 81  TFLASNSDASKSLTFELYVNV 101

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 352 SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
           +    V+W+KD + ++  +K  ++      KLLI+N++  D G YTC
Sbjct: 27  NTLPPVQWYKDCKLLEGDRKRFVKGS----KLLIQNVTEEDAGNYTC 69

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 447 KWYKDGKEIAFSENVTLSIDGKKQK---LIIFSAGLEDAGEYSCRV 489
           KW+KDGKE+             K+K   L I  A L D+GEY+C V
Sbjct: 17  KWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVV 62

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI----ILELKEADSETDAGDYKVVATN 636
                P P+I W +N KPL SS   R             L +     E D+G Y  VA+N
Sbjct: 6   LASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE-DSGTYTCVASN 64

Query: 637 ELGSATHGAR 646
             G+ +    
Sbjct: 65  SAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635
           +RL  KVKA P P I W++N K +  S K R    G +  L +K+  +E DAG+Y VV T
Sbjct: 1   VRLPVKVKAYPPPEIQWYKNGKLI--SEKNRTKKSGHS--LTIKDV-TEEDAGNYTVVLT 55

Query: 636 N 636
           N
Sbjct: 56  N 56

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143268 cd05860, Ig4_SCFR, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 19  TKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTI 76
           T  V A EN  + L V   A P+P+   W Y    L  T D  V S     + YVS + +
Sbjct: 12  TIFVNAGEN--LDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHL 69

Query: 77  KSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
             +K  E G YT +  N +  A +   V VNT
Sbjct: 70  TRLKGTEGGTYTFLVSNSDASASVTFNVYVNT 101

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. Length = 101

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 30  VTLEVRLVAVPEPDLLWYYNGEPL-QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88
           V LE R+  VP P + W    E L   TD V  S   D   Y+ ++ I+   K + G YT
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRV--SMHQDNCGYICLL-IQGATKEDAGWYT 57

Query: 89  VVAKNREG----EAKMDI 102
           V AKN  G     A++D+
Sbjct: 58  VSAKNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 631
           E  ++ L    + +P P+I W ++ KPL     +   F      L +K   S  D+G Y 
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPL----PESNRFVASGSTLTIKSV-SLEDSGLYT 55

Query: 632 VVATNELG 639
            VA N  G
Sbjct: 56  CVAENSAG 63

Length = 63

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 122 DVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCSTK 176
           D  +  GE AVL      G P P V W KDG+ +       +I  + N   L + +    
Sbjct: 5   DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGN---LLIAEARKS 61

Query: 177 DKGRYSVKVTNKEGTVESAA 196
           D+G Y    TN  G  ESAA
Sbjct: 62  DEGTYKCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 244 DVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCSTK 298
           D  +  GE AVL      G P P V W KDG+ +       +I  + N   L + +    
Sbjct: 5   DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGN---LLIAEARKS 61

Query: 299 DKGRYSVKVTNKEGTVESAA 318
           D+G Y    TN  G  ESAA
Sbjct: 62  DEGTYKCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 133 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 192
           L V+V   P P+ +WYKDGKLI  +      + H+L +   +    G Y++ + N    +
Sbjct: 3   LPVKVAAYPPPEFQWYKDGKLISGKH-----SQHSLQIKDVTEASAGTYTLVLWNSAAGL 57

Query: 193 ESAANL 198
           E   +L
Sbjct: 58  EKRISL 63

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 255 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 314
           L V+V   P P+ +WYKDGKLI  +      + H+L +   +    G Y++ + N    +
Sbjct: 3   LPVKVAAYPPPEFQWYKDGKLISGKH-----SQHSLQIKDVTEASAGTYTLVLWNSAAGL 57

Query: 315 ESAANL 320
           E   +L
Sbjct: 58  EKRISL 63

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 344 AVLEVEVTSDK-ADVKWFKDGQEIKTSKKVTIEKKGTIRK----LLIRNISVHDEGEYTC 398
             L    +      + W K+G+ + +S    +            L I N+++ D G YTC
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 135 VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
           V+  G P P+V+WYK+G+LI      + K    LT+ + + KD G Y+V +TN 
Sbjct: 5   VKYYGYPPPEVKWYKNGQLIVLNH--TFKRGVHLTIYEVTEKDAGNYTVVLTNP 56

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 257 VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 310
           V+  G P P+V+WYK+G+LI      + K    LT+ + + KD G Y+V +TN 
Sbjct: 5   VKYYGYPPPEVKWYKNGQLIVLNH--TFKRGVHLTIYEVTEKDAGNYTVVLTNP 56

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
           A V W   G  +   E     +   +  L+I S    DAG Y+C+  + G K++ AT ++
Sbjct: 25  ASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84

Query: 504 EAPAV 508
               V
Sbjct: 85  NVLEV 89

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVV 633
           ++L  ++ A P P I W RNN+ +  +  +  ++  +   + L +K  + + DAG Y V 
Sbjct: 1   VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVN-KKDAGWYTVS 59

Query: 634 ATNELGSATHGARVTV 649
           A NE G AT  AR+ V
Sbjct: 60  AVNEAGVATCHARLDV 75

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 118 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT----SEKNTHTLTLIQC 173
           + LH V    G +  L     G P P + W KDGK  K           K   TL L   
Sbjct: 1   KRLHAVPA--GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESV 58

Query: 174 STKDKGRYSVKVTNKEGTVESAANLNV 200
              D G+Y+  V NK G++     ++V
Sbjct: 59  VPSDSGKYTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 240 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT----SEKNTHTLTLIQC 295
           + LH V    G +  L     G P P + W KDGK  K           K   TL L   
Sbjct: 1   KRLHAVPA--GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESV 58

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNV 322
              D G+Y+  V NK G++     ++V
Sbjct: 59  VPSDSGKYTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk receptor TrkB

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 40  PEPDLLWYYNGEPLQETD----EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95
           P+P L W++ G  L E++    ++   + ++ H  + +     +     G+YT+VAKN  
Sbjct: 11  PKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHL---NNGIYTLVAKNEY 67

Query: 96  GEAKMDI 102
           GE + ++
Sbjct: 68  GEDEKNV 74

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. Length = 79

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
             + EGE   L+    G P P   WYKDG  +   Q     N      +     D G Y+
Sbjct: 9   TVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ-----NGFFTPNVSAE--DSGTYT 61

Query: 183 VKVTNKE-GTVESAANLNV 200
              +N   G   +   L V
Sbjct: 62  CVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 304
             + EGE   L+    G P P   WYKDG  +   Q     N      +     D G Y+
Sbjct: 9   TVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ-----NGFFTPNVSAE--DSGTYT 61

Query: 305 VKVTNKE-GTVESAANLNV 322
              +N   G   +   L V
Sbjct: 62  CVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQK----LIIFSAGLEDAGEYSCRVGDTGDKESK 498
           + W K+GK +  S    +            L I +  LED+G Y+C   ++    S 
Sbjct: 15  ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSA 71

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--TLTLIQCSTKDKGRYSVKV 185
           GE+  L  +  G P P + W  +G  I++      +     TL L      D   Y    
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 186 TNKEGTVESAANLNV 200
           +N  G + + A ++V
Sbjct: 61  SNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 250 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--TLTLIQCSTKDKGRYSVKV 307
           GE+  L  +  G P P + W  +G  I++      +     TL L      D   Y    
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 308 TNKEGTVESAANLNV 322
           +N  G + + A ++V
Sbjct: 61  SNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ----ITSEKNTHTLTLIQCSTKDK 178
           + +  G    L V + GEP+P V W +  K   + +    + S K+  +  +     +D+
Sbjct: 5   IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDE 64

Query: 179 GRYSVKVTNKEGTVESAANLNV 200
           G Y++ VTN  G  E  A+L V
Sbjct: 65  GVYTITVTNPVG--EDHASLFV 84

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ----ITSEKNTHTLTLIQCSTKDK 300
           + +  G    L V + GEP+P V W +  K   + +    + S K+  +  +     +D+
Sbjct: 5   IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDE 64

Query: 301 GRYSVKVTNKEGTVESAANLNV 322
           G Y++ VTN  G  E  A+L V
Sbjct: 65  GVYTITVTNPVG--EDHASLFV 84

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 345 VLEVEVTSDKADV--KWFKDGQEIKTSKKVTIEKKGTIRK---LLIRNISVHDEGEYTC 398
           VL+ E TS+   +  KWFKDG+E+    K    K    +K   L I    + D GEYTC
Sbjct: 2   VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTC 60

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG--- 639
           +  P P++ W ++ +PL    ++  I D  N++  + EA   +D G YK VATN +G   
Sbjct: 22  RGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL--IAEARK-SDEGTYKCVATNMVGERE 78

Query: 640 SATHGARVTV 649
           SA   AR++V
Sbjct: 79  SAA--ARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 338 VKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYT 397
           V E  +  LE    S+ A V W   G  ++  ++       T   LLIR++S  D G YT
Sbjct: 8   VVEGNSVFLECSPKSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYT 67

Query: 398 CSL---PDQETSAELNVVELPP 416
           C       ++T A  ++  L  
Sbjct: 68  CQSVEHGFKQTLATYSLNVLEV 89

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDA 627
           T+ E  T+ L   V   P P + W +N++ L  S       + G+   L +K   SE D+
Sbjct: 12  TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSE-DS 70

Query: 628 GDYKVVATNELGSATHGARVTVDV 651
           G Y +V  N+ G  T    VTV V
Sbjct: 71  GKYGIVVKNKYGGET--VDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITS--EKNTHTLTLIQCSTKDK 178
           V+I EG++  L+  V G+P P+V W K+ + +   D       +    +LT+   S++D 
Sbjct: 11  VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDS 70

Query: 179 GRYSVKVTNKEG 190
           G+Y + V NK G
Sbjct: 71  GKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITS--EKNTHTLTLIQCSTKDK 300
           V+I EG++  L+  V G+P P+V W K+ + +   D       +    +LT+   S++D 
Sbjct: 11  VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDS 70

Query: 301 GRYSVKVTNKEG 312
           G+Y + V NK G
Sbjct: 71  GKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 40  PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
           P+P++ W  N + L  +D   ++ + +   Y S+ TIK +   + G Y +V KN+ G   
Sbjct: 29  PDPEVSWLKNDQALALSDH--YNVKVEQGKYASL-TIKGVSSEDSGKYGIVVKNKYGGET 85

Query: 100 MDIPVKV 106
           +D+ V V
Sbjct: 86  VDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 28/42 (66%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK 155
           P I+E   D+ +++G+ A L+ +  G P+P ++W K+G+ ++
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLE 43

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 28/42 (66%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK 277
           P I+E   D+ +++G+ A L+ +  G P+P ++W K+G+ ++
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLE 43

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 131 AVLSVQVGGEPSPKVEWYK-DGKLIKDR-QITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
                +VGG+P P V W K DG+L K R +I  +    +L +   +  D+G Y+ +  N 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDD---KSLKIRNVTAGDEGSYTCEAENM 57

Query: 189 EGTVESAANLNV 200
            G +E++A+L V
Sbjct: 58  VGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 253 AVLSVQVGGEPSPKVEWYK-DGKLIKDR-QITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 310
                +VGG+P P V W K DG+L K R +I  +    +L +   +  D+G Y+ +  N 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDD---KSLKIRNVTAGDEGSYTCEAENM 57

Query: 311 EGTVESAANLNV 322
            G +E++A+L V
Sbjct: 58  VGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
          P   + K K  YA +   VTLE   +  P P + W    EP+  T E+  S         
Sbjct: 1  PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSG-------- 52

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
          +++ I +I+  +EG Y   A+N +G+ K
Sbjct: 53 AVLKIFNIQPEDEGTYECEAENIKGKDK 80

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 352 SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
           + K  + W K  + +  S ++ I   G+   L I N++  DEG+YTC
Sbjct: 13  APKPTISWSKGTELLTNSSRICIWPDGS---LEILNVTKSDEGKYTC 56

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640
           K KA+P P+I W +  + L +S +     DG   IL + ++    D G Y   A N  G 
Sbjct: 9   KPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKS----DEGKYTCFAENFFGK 64

Query: 641 ATHGARVTV 649
           A     ++V
Sbjct: 65  ANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
          V L V++ A P P++ WY NG+ + E +    S  S        +TIK + + + G YTV
Sbjct: 1  VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHS--------LTIKDVTEEDAGNYTV 52

Query: 90 VAKNR 94
          V  N+
Sbjct: 53 VLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 40  PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
           P+P+++W+ N + ++ ++   +S + +   Y S+ TIK +   + G Y++  KN+ G   
Sbjct: 29  PDPEVIWFKNDQDIELSEH--YSVKLEQGKYASL-TIKGVTSEDSGKYSINVKNKYGGET 85

Query: 100 MDIPVKV 106
           +D+ V V
Sbjct: 86  VDVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 30 VTLEVRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88
          V LE ++ A+P P + W  N E +Q  TD +  S   D    V+++ IK++ K++ G YT
Sbjct: 1  VKLECQISAIPPPKIFWKRNNEMVQYNTDRI--SLYQDNSGRVTLL-IKNVNKKDAGWYT 57

Query: 89 VVAKNREGEA 98
          V A N  G A
Sbjct: 58 VSAVNEAGVA 67

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 582 VKASPAPSIVWFRNNKPLLSS---PKKREIFDGENIILE--LK-EADSETDAGDYKVVAT 635
           V+ +P P++ W+ N   L  S     +              L+ +  +  + G+Y +VA+
Sbjct: 7   VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66

Query: 636 NELGSAT 642
           NE G  +
Sbjct: 67  NEYGQDS 73

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 137 VGGEPSPKVEWYKDGKLIK-DRQITSEKNTH---TLTLIQCSTKDKGRYSVKVTNKEGTV 192
             G P+P + W K+GK  K + +I   K  +   +L +      DKG Y+  V N+ G++
Sbjct: 18  AAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 77

Query: 193 ESAANLNV 200
               +L+V
Sbjct: 78  NHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEKNTH---TLTLIQCSTKDKGRYSVKVTNKEGTV 314
             G P+P + W K+GK  K + +I   K  +   +L +      DKG Y+  V N+ G++
Sbjct: 18  AAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 77

Query: 315 ESAANLNV 322
               +L+V
Sbjct: 78  NHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 133 LSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL-IQCSTK-DKGRYSVKVTN 187
           L  +V   P P++ W K+ +++    DR    + N   + L IQ + K D G Y+V   N
Sbjct: 3   LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVN 62

Query: 188 KEGTVESAANLNV 200
           + G V   A L+V
Sbjct: 63  EAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 255 LSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL-IQCSTK-DKGRYSVKVTN 309
           L  +V   P P++ W K+ +++    DR    + N   + L IQ + K D G Y+V   N
Sbjct: 3   LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVN 62

Query: 310 KEGTVESAANLNV 322
           + G V   A L+V
Sbjct: 63  EAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVA 634
           +RL  +V   P P I W + N+ L  +  +  +  D    I  L +  ++ DAG Y V A
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60

Query: 635 TNELGSATHGARVTV 649
            NE G  +  AR+ V
Sbjct: 61  KNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 133 LSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT-HTLTLIQCSTK-DKGRYSVKVTN 187
           L  +V G P P++ W K+ + +    DR    + N  +   LIQ +TK D G Y+V   N
Sbjct: 3   LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKN 62

Query: 188 KEGTVESAANLNV 200
           + G V   A L+V
Sbjct: 63  EAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 255 LSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT-HTLTLIQCSTK-DKGRYSVKVTN 309
           L  +V G P P++ W K+ + +    DR    + N  +   LIQ +TK D G Y+V   N
Sbjct: 3   LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKN 62

Query: 310 KEGTVESAANLNV 322
           + G V   A L+V
Sbjct: 63  EAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTH-TLTLIQCSTKDK 178
           V+I EG++  L+  V G P P+V W+K+ + I+  +   +  E+  + +LT+   +++D 
Sbjct: 11  VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDS 70

Query: 179 GRYSVKVTNKEG 190
           G+YS+ V NK G
Sbjct: 71  GKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTH-TLTLIQCSTKDK 300
           V+I EG++  L+  V G P P+V W+K+ + I+  +   +  E+  + +LT+   +++D 
Sbjct: 11  VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDS 70

Query: 301 GRYSVKVTNKEG 312
           G+YS+ V NK G
Sbjct: 71  GKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
           KP I       S+T G    L+    GG P P + WY++G +           + TLTL 
Sbjct: 1   KPVITVS-PSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGS-TLTLS 58

Query: 172 QCSTKDKGRYSVKVTN 187
             +++D G Y+   +N
Sbjct: 59  SVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
           KP I       S+T G    L+    GG P P + WY++G +           + TLTL 
Sbjct: 1   KPVITVS-PSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGS-TLTLS 58

Query: 294 QCSTKDKGRYSVKVTN 309
             +++D G Y+   +N
Sbjct: 59  SVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
           P P + W R + PL  +  K+      N  L+L     E+D G+Y   A N  GSA H  
Sbjct: 11  PTPEVHWDRIDGPLSPNRTKKLNN---NKTLQLDNV-LESDDGEYVCTAENSEGSARHHY 66

Query: 646 RVTVD 650
            VTV+
Sbjct: 67  TVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI-TSEKNTHTLTLIQCSTKDKGRYSVKVT 186
           G S  L     G P P + W KD K +   +I  S K   TL+L     +D G+Y+  V+
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 187 NKEGTVESAANLNV 200
           N+ G + +   ++V
Sbjct: 69  NRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 250 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI-TSEKNTHTLTLIQCSTKDKGRYSVKVT 308
           G S  L     G P P + W KD K +   +I  S K   TL+L     +D G+Y+  V+
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 309 NKEGTVESAANLNV 322
           N+ G + +   ++V
Sbjct: 69  NRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 337 EVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGE 395
            V E E+  L      +   +  W+KDG  + +S+                N+S  D G 
Sbjct: 10  VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ----------NGFFTPNVSAEDSGT 59

Query: 396 YTCSLPDQETSAELNVVEL 414
           YTC   +       N V L
Sbjct: 60  YTCVASNGGGGKTSNPVTL 78

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
          PP   +    +   +    TL  +    P P + W  NG+PL ETD+        +    
Sbjct: 1  PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPL-ETDKDDPRSHRIVLPSG 59

Query: 72 SIVTIKSIKKR----EEGVYTVVAKNREGEA 98
          S+  ++ +  R    +EGVY  VA N  GEA
Sbjct: 60 SLFFLRVVHGRKGRSDEGVYVCVAHNSLGEA 90

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQCST 175
           L+ + D     G S     +  G P P   W K+G+ L  + +I  E     +T +  S 
Sbjct: 3   LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKL--SL 60

Query: 176 KDKGRYSVKVTNKEGTVESAANLNV 200
            D G Y     NK GT+ ++A L V
Sbjct: 61  SDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQCST 297
           L+ + D     G S     +  G P P   W K+G+ L  + +I  E     +T +  S 
Sbjct: 3   LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKL--SL 60

Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
            D G Y     NK GT+ ++A L V
Sbjct: 61  SDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL--PDQETSAELNV 411
           V W KDG+ +K S +V IE   +   L+I+N    D G+YT +L  P  E SA +NV
Sbjct: 16  VTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 132 VLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTH-TLTLIQCSTKDKGRYSVKVTNKE 189
            L   + G P P  +W++DG  L   +   S  +   TLTL      D G Y     N  
Sbjct: 2   TLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAF 61

Query: 190 GTVESAANL 198
           G+V S+ N 
Sbjct: 62  GSVCSSQNF 70

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 254 VLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTH-TLTLIQCSTKDKGRYSVKVTNKE 311
            L   + G P P  +W++DG  L   +   S  +   TLTL      D G Y     N  
Sbjct: 2   TLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAF 61

Query: 312 GTVESAANL 320
           G+V S+ N 
Sbjct: 62  GSVCSSQNF 70

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
           V   +V G+P+P V+W K+G ++      +I  E N   L L++    D+G Y     N 
Sbjct: 3   VFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVK---SDEGFYQCIAEND 59

Query: 189 EGTVESAANL 198
            G V++ A L
Sbjct: 60  VGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 254 VLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 310
           V   +V G+P+P V+W K+G ++      +I  E N   L L++    D+G Y     N 
Sbjct: 3   VFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVK---SDEGFYQCIAEND 59

Query: 311 EGTVESAANL 320
            G V++ A L
Sbjct: 60  VGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKE--IAFSENVTLSIDGKKQKLII 474
           ++ +     ++S  E   F  ++      + W+    E  +   +   +  D  +  L I
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTI 61

Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
           ++A +EDAG Y C   D    ES+AT+ ++
Sbjct: 62  YNANIEDAGIYKCVATDAKGTESEATVNLK 91

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 349 EVTSDKADV--KWFKDGQEI-KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
           + T ++ DV  +W+KD   + K ++K    K  T   L I ++S++D G YTC L 
Sbjct: 22  DFTINRTDVELQWYKDSVLLDKDNEKFYSLKGST--YLHIIDVSLNDSGYYTCKLQ 75

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. Length = 95

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 694 PVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
           P     P   V V++GE  +        P P   W  +G  +  S R K
Sbjct: 1   PKFTQKPKD-VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFK 48

Length = 90

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
          V L V++ A P P+  WY +G+ +        S +   HS      IK + +   G YT+
Sbjct: 1  VKLPVKVAAYPPPEFQWYKDGKLI--------SGKHSQHSLQ----IKDVTEASAGTYTL 48

Query: 90 VAKNR 94
          V  N 
Sbjct: 49 VLWNS 53

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635
           +++  K    P P + W++N + ++ +        G  + L + E  +E DAG+Y VV T
Sbjct: 1   VKIPVKYYGYPPPEVKWYKNGQLIVLNHT---FKRG--VHLTIYEV-TEKDAGNYTVVLT 54

Query: 636 N 636
           N
Sbjct: 55  N 55

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI 154
           + EP  D+    G   VL+    GEP PK+EW KDG L+
Sbjct: 3   LSEP-SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLL 40

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI 276
           + EP  D+    G   VL+    GEP PK+EW KDG L+
Sbjct: 3   LSEP-SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLL 40

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|185145 PRK15223, PRK15223, pilin outer membrane usher protein SafC; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 15/100 (15%)

Query: 403 QETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL---TKGDALVKW-YKDGKEIAFS 458
           QE +  L+   LP +  V   DV+V   E A  E +        AL+    +DG  I F 
Sbjct: 713 QENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFG 772

Query: 459 ENVTLS--------IDGKKQKLIIFSAGLEDAGEYSCRVG 490
             VT++        +D   Q   ++  GL D GE + + G
Sbjct: 773 AQVTVNGQDGSAALVDTDSQ---VYLTGLADKGELTVKWG 809

Length = 836

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 139 GEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 192
           G P+P++ W K  G+L  DR    E    TL +   S +D G Y    +N  G+ 
Sbjct: 9   GLPTPEISWIKIGGELPADR-TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 261 GEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 314
           G P+P++ W K  G+L  DR    E    TL +   S +D G Y    +N  G+ 
Sbjct: 9   GLPTPEISWIKIGGELPADR-TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 575 TIRLMAKVKASPAPSIVWFRNNKPL-LSSPKKREIFDGENIILELKEADSETDAGDYKVV 633
           T RL  + +  P P+I W  N  P+    P  R   DG  +IL         D   Y+  
Sbjct: 3   TGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNV---QPNDTAVYQCN 59

Query: 634 ATNELGSATHGARVTV 649
           A+N  G     A V V
Sbjct: 60  ASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 29  EVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88
           ++ L+V +   P P + W    +   ET+  V   + + +  +S   I+  ++ +EGVYT
Sbjct: 12  KLRLDVPISGEPAPTVTWSRGDKAFTETEGRV---RVESYKDLSSFVIEGAEREDEGVYT 68

Query: 89  VVAKNREGEAKMDIPVKV 106
           +   N  GE    + VKV
Sbjct: 69  ITVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 40  PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE-------GVYTVVAK 92
           P+P L WY+NG  L E+D +    ++++H  V+  T      + +       G YT+VA 
Sbjct: 11  PKPTLTWYHNGAVLNESDYI----RTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66

Query: 93  NREGEAKMDI 102
           N  G+    I
Sbjct: 67  NEYGQDSKSI 76

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV 86
           S VTL   +   P+ D+ W+  G+ L+E+  V   +          +TI ++   + G 
Sbjct: 1  GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSS---ITLTISNVTPEDSGT 57

Query: 87 YT 88
          YT
Sbjct: 58 YT 59

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTL 170
           P I++   D+ +  GES  L  +V G       W K  K I++ +   I + +N+  LT+
Sbjct: 1   PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI 60

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            +   +  G Y+++V NK G+ ++  NL V
Sbjct: 61  TEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTL 292
           P I++   D+ +  GES  L  +V G       W K  K I++ +   I + +N+  LT+
Sbjct: 1   PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTI 60

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            +   +  G Y+++V NK G+ ++  NL V
Sbjct: 61  TEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 131 AVLSVQVGGEPSPKVEWYKDGKL----IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
           A L     G P+P++ W KDG       ++R++          ++    +D G YS    
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQ 60

Query: 187 NKEGTVESAANLNV 200
           N  G++ + A L V
Sbjct: 61  NTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 253 AVLSVQVGGEPSPKVEWYKDGKL----IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 308
           A L     G P+P++ W KDG       ++R++          ++    +D G YS    
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQ 60

Query: 309 NKEGTVESAANLNV 322
           N  G++ + A L V
Sbjct: 61  NTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 21/94 (22%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELT-----KGDALVKWYKDGKEIAFSENVTLSIDGKK 469
            P ++     V    D      + LT            WYKDG  ++ S+N         
Sbjct: 1   KPVLTPSPTVVFEGED------VTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------ 48

Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
                 +   ED+G Y+C   + G  ++   +T+
Sbjct: 49  ----TPNVSAEDSGTYTCVASNGGGGKTSNPVTL 78

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640
           K   +P P+  W +N +P L+S  + E+  G+  I +L    S +D+G Y+ VA N+ G+
Sbjct: 22  KASGNPRPAYRWLKNGQP-LASENRIEVEAGDLRITKL----SLSDSGMYQCVAENKHGT 76

Query: 641 ATHGARVTV 649
               A + V
Sbjct: 77  IYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 342 ENAVLEVEVTSDK-ADVKWFKDGQEIKTSKKVTIEKKGTIRKLL-IRNISVHDEGEYTCS 399
            +  L   V+     DV WFK+G+ ++ S  V  ++       L I N++  D G YTC 
Sbjct: 2   SSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCV 61

Query: 400 L 400
           +
Sbjct: 62  V 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHS 69
          + PTF +     +A  +      V + A P P + W  +   L E   E+  S+ +   +
Sbjct: 5  LKPTFGQL---EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQET 61

Query: 70 -YVSIVTIKSIKKREEGVYTVVAKNREGE 97
           YVS + +   K+ + G+YT +A+N +  
Sbjct: 62 RYVSKLKLIRAKEEDSGLYTALAQNEDAV 90

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. Length = 101

>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 11/157 (7%)

Query: 341 RENAVLEVEVTSDKADVKWF-KDGQEIKTSKKVTIEKKGT-IRKLLIRNISVHDEGEYTC 398
            +  +    VT  K D   F +D       KK+T  + G     L I N+   DEG Y C
Sbjct: 56  DKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYIC 115

Query: 399 SLPDQETSAELNVVELPPEISVPLQ-----DVKVSRDEKASFEIELTKGDALVKWYKDGK 453
           ++       E  +       ++  Q     D K+         I  T  D  + WYK+G 
Sbjct: 116 TISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDG--ISSTFKDYTLTWYKNGN 173

Query: 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
            + +++ + L  +     L+I SA  +D+G Y+C + 
Sbjct: 174 IVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLR 208

Length = 227

>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 125 ITEGESAVLSVQVGGEPSPK-VEWYKDG--KLIKDRQ----ITSEKNTHTLTLIQCSTKD 177
           I+ GES     QV GE   K + W+     KL  ++Q    + ++  + TLT+   +  D
Sbjct: 12  ISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDD 71

Query: 178 KGRYSVKVTNKEGTVESAANLNVDPY 203
            G Y   V+N++   ES A +NV  +
Sbjct: 72  AGIYKCVVSNEDEG-ESEATVNVKIF 96

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	785
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.97
KOG4194|consensus	873		99.96
KOG3515|consensus	741		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.95
PHA02785	326	IL-beta-binding protein; Provisional	99.94
KOG3515|consensus	741		99.93
PHA02826	227	IL-1 receptor-like protein; Provisional	99.83
PHA02826	227	IL-1 receptor-like protein; Provisional	99.82
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.77
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.69
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.69
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.68
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.67
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.67
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.65
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.64
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.63
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.63
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.62
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.62
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.62
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.61
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.6
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.6
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.6
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.6
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.6
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.59
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.59
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.59
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.59
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.59
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.58
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.58
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.58
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.57
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.57
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.56
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.56
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.55
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.55
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.55
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.54
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.54
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.54
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.54
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.54
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.54
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.53
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.53
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.53
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.52
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.52
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.52
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.52
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.52
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.51
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.51
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.51
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.51
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.5
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.5
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.5
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.5
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.5
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.5
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.49
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.49
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.48
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.48
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.48
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.47
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.47
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.47
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.47
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.47
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.46
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.46
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.46
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.46
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.46
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.45
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.45
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.45
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.45
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.45
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.45
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.44
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.44
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.44
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.44
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.44
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.44
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.44
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.44
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.43
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.43
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.42
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.42
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.42
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.42
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.41
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.41
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.41
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.41
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.41
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.41
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.41
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.4
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.4
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.4
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.4
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.39
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.39
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.39
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.38
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.38
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.37
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.37
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.37
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.36
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.36
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.36
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.35
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.35
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.33
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.33
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.33
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.33
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.32
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.32
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.32
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.31
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.31
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.31
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.3
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.3
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.3
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.29
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.29
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.29
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.29
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.28
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.28
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.27
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.27
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.27
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.27
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.27
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.26
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.26
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.26
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.26
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.26
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.25
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.24
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.24
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.24
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.24
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.24
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.23
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.22
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.22
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.22
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.21
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.19
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.16
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.16
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.15
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.15
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.14
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.14
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.14
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.12
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.11
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.09
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.08
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.08
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.08
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.07
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.07
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.06
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.05
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.04
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.04
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.03
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.02
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.01
smart00409	86	IG Immunoglobulin.	99.01
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.01
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.01
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.0
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.99
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.98
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.96
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.95
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.95
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.94
smart00409	86	IG Immunoglobulin.	98.94
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.94
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.93
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.93
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.92
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.92
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.91
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.89
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.86
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.85
PHA03376	221	BARF1; Provisional	98.85
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.83
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.82
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.82
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.81
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.78
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.77
PHA03376	221	BARF1; Provisional	98.74
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.71
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.7
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.68
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.67
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.67
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.63
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.61
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.59
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.56
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.55
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.55
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.54
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.52
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.51
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.5
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.47
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.47
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.47
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.47
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.46
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.45
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.44
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.43
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.42
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.42
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.42
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.41
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.41
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.41
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.4
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.4
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.39
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.39
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.38
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.38
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.37
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.37
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.35
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.35
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.32
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.31
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.31
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.29
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.28
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.27
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.27
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.26
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.26
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.26
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.25
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.25
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.24
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.24
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.23
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.22
PHA03270	466	envelope glycoprotein C; Provisional	98.2
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.2
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.2
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.19
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.17
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.16
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.15
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.14
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.14
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.13
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.11
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.1
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.09
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.08
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.07
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.07
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.04
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.03
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.01
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.0
PHA03269	566	envelope glycoprotein C; Provisional	98.0
PHA03270	466	envelope glycoprotein C; Provisional	97.98
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.98
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.95
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.94
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.93
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.92
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.92
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.92
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.92
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.92
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.9
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.9
smart00407	75	IGc1 Immunoglobulin C-Type.	97.9
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.89
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.89
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.89
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.86
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.86
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.86
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.86
PHA03271	490	envelope glycoprotein C; Provisional	97.85
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.85
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.84
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.83
smart00407	75	IGc1 Immunoglobulin C-Type.	97.81
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.8
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.78
PHA03273	486	envelope glycoprotein C; Provisional	97.78
KOG0613|consensus	1205		97.78
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.77
PHA03273	486	envelope glycoprotein C; Provisional	97.77
PHA03271	490	envelope glycoprotein C; Provisional	97.77
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.75
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.74
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.71
PHA03269	566	envelope glycoprotein C; Provisional	97.7
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.69
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.68
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.68
KOG1480|consensus	909		97.68
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.67
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.62
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.62
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.62
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.57
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.56
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.53
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.52
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.52
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.52
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.51
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.5
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.49
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.46
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.44
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.39
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.38
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.38
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.38
smart00406	81	IGv Immunoglobulin V-Type.	97.37
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.33
KOG0613|consensus	1205		97.33
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.32
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.26
smart00406	81	IGv Immunoglobulin V-Type.	97.26
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.24
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.24
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.18
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.14
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.09
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.08
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.07
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.93
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.68
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.68
PHA02633	63	hypothetical protein; Provisional	96.6
PHA02982	251	hypothetical protein; Provisional	96.51
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.48
PHA02982	251	hypothetical protein; Provisional	96.35
PHA02633	63	hypothetical protein; Provisional	96.33
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.3
KOG1480|consensus	909		96.22
PHA02914	500	Immunoglobulin-like domain protein; Provisional	96.21
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.96
KOG4597|consensus	560		95.65
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	94.95
KOG4597|consensus	560		94.92
PHA03042	286	CD47-like protein; Provisional	94.45
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	94.39
PHA03042	286	CD47-like protein; Provisional	94.32
PHA02865	338	MHC-like TNF binding protein; Provisional	94.11
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.1
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.51
PHA02865	338	MHC-like TNF binding protein; Provisional	93.15
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	92.64
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	91.18
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	91.17
PF05955	226	Herpes_gp2: Equine herpesvirus glycoprotein gp2; I	90.59
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.58
PHA03283	542	envelope glycoprotein E; Provisional	90.57
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.29
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	89.27
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	87.55
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	87.3
PHA03286	492	envelope glycoprotein E; Provisional	87.29
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	87.23
PHA03283	542	envelope glycoprotein E; Provisional	86.65
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	86.28
PHA03282	540	envelope glycoprotein E; Provisional	85.82
PHA03052	69	Hypothetical protein; Provisional	85.79
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	84.22
PHA03281	642	envelope glycoprotein E; Provisional	83.69
PHA03052	69	Hypothetical protein; Provisional	83.63
KOG1026|consensus	774		83.45
KOG1026|consensus	774		82.53
PRK14081	667	triple tyrosine motif-containing protein; Provisio	82.34
PHA03286	492	envelope glycoprotein E; Provisional	82.26
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	82.03
PHA03282	540	envelope glycoprotein E; Provisional	81.16

>KOG3513|consensus

Probab=100.00  E-value=1.6e-59  Score=503.50  Aligned_cols=549  Identities=23%  Similarity=0.355  Sum_probs=432.2

Q ss_pred             CeeeecCCceEe-cCCCe--EEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccC-CCCCeE
Q psy2775          13 PTFSKKTKPVYA-EENSE--VTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIK-KREEGV   86 (785)
Q Consensus        13 p~~~~~~~~~~v-~~G~~--v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~   86 (785)
                      |.|...+....+ ..-+.  +.|.|.+.|+|.|++.|++||.......  ++...  +      ++|.|.+.. ..|.|.
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~------G~lvI~~p~~~~d~G~  111 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--G------GTLVITNPDAALDQGI  111 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee--c------CceEecCCcchhhcce
Confidence            899888775444 33333  9999999999999999999999764433  33333  2      348888887 789999


Q ss_pred             EEEEEEcCCeeEEE-EeeEEEeCCCCCCCcee-cCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcc---cceEE
Q psy2775          87 YTVVAKNREGEAKM-DIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQIT  160 (785)
Q Consensus        87 Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~-~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~---~~~~~  160 (785)
                      |+|.|+|..|.+.. .+.|+..    ..+.+. .....+.+.+|+.+.|.|.. .++|.+.+.|..++.+-.   .....
T Consensus       112 YqC~AsN~~Gta~S~~~~l~~~----~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~  187 (1051)
T KOG3513|consen  112 YQCFASNKLGTAVSREARLQFG----FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRV  187 (1051)
T ss_pred             eEEEeecccceeeccceeeccc----ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCccee
Confidence            99999999997654 4445443    233333 45567899999999999998 457888999998654421   12344


Q ss_pred             EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE---EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCe
Q psy2775         161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE---SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS  237 (785)
Q Consensus       161 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  237 (785)
                      ..+....|.|.++..+|.+.|.|.|.+......   .-+.|++....                         .....+|.
T Consensus       188 ~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~-------------------------~~~~~~P~  242 (1051)
T KOG3513|consen  188 FSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNN-------------------------VMREYAPK  242 (1051)
T ss_pred             EecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccc-------------------------cccccCCc
Confidence            445566899999999999999999988432211   12444442111                         11124455


Q ss_pred             eeecCC-cceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEE
Q psy2775         238 ILEPLH-DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES  316 (785)
Q Consensus       238 ~~~~~~-~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  316 (785)
                      +...+. ......|+.+.|.|.+.|+|-|+|.|.|.|......+........+|.|.+++.+|+|.|+|.|.|..|....
T Consensus       243 i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~  322 (1051)
T KOG3513|consen  243 ILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATH  322 (1051)
T ss_pred             cccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccccee
Confidence            555433 5667789999999999999999999999877544455566666779999999999999999999999998888


Q ss_pred             EEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCc---EEEEEcCcEEEEEEcCCCCCC
Q psy2775         317 AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKK---VTIEKKGTIRKLLIRNISVHD  392 (785)
Q Consensus       317 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~---~~~~~~~~~~~l~i~~~~~~d  392 (785)
                      ...|.|.. +|.+...+.+..+..|+.++|.|.+.+ |.|+++|++||.++....+   +.+. .|.   |.|.++...|
T Consensus       323 ~~~v~v~a-~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~-~g~---L~is~v~~~d  397 (1051)
T KOG3513|consen  323 SGHVTVYA-PPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID-DGT---LIISNVQESD  397 (1051)
T ss_pred             eEEEEEec-CchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe-CCE---EEEEeccccc
Confidence            88898885 677888889999999999999999998 8899999999999987665   5443 343   9999999999


Q ss_pred             ceEEEEEEeccce----EEEEEEEecCCcccccCCC--eEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEE
Q psy2775         393 EGEYTCSLPDQET----SAELNVVELPPEISVPLQD--VKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSI  465 (785)
Q Consensus       393 ~G~Y~C~a~n~~~----~~~~~v~~~~~~~~~~~~~--~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~  465 (785)
                      +|.|+|.|.|..+    .+.+.|+..+|.+...+..  ..+..|.++.|.|...+ |.|.++|.|++..+..+.++.+..
T Consensus       398 sg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e  477 (1051)
T KOG3513|consen  398 SGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE  477 (1051)
T ss_pred             CeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC
Confidence            9999999999755    6688899887777766544  36778999999999998 889999999999778889999988


Q ss_pred             eCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeec
Q psy2775         466 DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNL  544 (785)
Q Consensus       466 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  544 (785)
                      +|   +|.|.+++.+|+|.|+|.|.|. |.....+.|.|+.+                                      
T Consensus       478 dG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~--------------------------------------  516 (1051)
T KOG3513|consen  478 DG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA--------------------------------------  516 (1051)
T ss_pred             CC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecC--------------------------------------
Confidence            88   7999999999999999999998 99999999999987                                      


Q ss_pred             ccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCC---CCeeEEeeCCeEEEEEc
Q psy2775         545 FIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKREIFDGENIILELK  619 (785)
Q Consensus       545 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~---~~~~~~~~~~~~~L~i~  619 (785)
                                    +.|+..++...+..|+.++|.|.+.-.|..  .|.|.+||..+...   ..+.+....+.+.|+|.
T Consensus       517 --------------tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~  582 (1051)
T KOG3513|consen  517 --------------TRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIA  582 (1051)
T ss_pred             --------------ceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEE
Confidence                          556666677889999999999999866554  79999999987543   22333332333679999


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCC
Q psy2775         620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI  659 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~  659 (785)
                      +++. +|+|.|.|+|.-..-+..+.+.+.|..+..|++.+
T Consensus       583 nv~l-~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v  621 (1051)
T KOG3513|consen  583 NVSL-EDSGKYTCVAQTALDSASARADLLVRGPPGPPPDV  621 (1051)
T ss_pred             eecc-ccCceEEEEEEEeecchhcccceEEecCCCCCCce
Confidence            9999 99999999999988888888888887554444434

>KOG3513|consensus

Probab=100.00  E-value=2.3e-56  Score=479.40  Aligned_cols=502  Identities=24%  Similarity=0.330  Sum_probs=389.5

Q ss_pred             cEEEEEEEeccCCCeEEEeECCEEcccce---EEEeCCEEEEEEcccC-CCCcEEEEEEEEcCCeeEEEE-EEEEeecCC
Q psy2775         130 SAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQCS-TKDKGRYSVKVTNKEGTVESA-ANLNVDPYE  204 (785)
Q Consensus       130 ~v~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~  204 (785)
                      .+.|.|.+.|+|.|+++|++||..+....   ....  ..+|.|.+.. ..|.|.|+|.|+|..|...+. +.|.....+
T Consensus        59 ~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~  136 (1051)
T KOG3513|consen   59 SVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--GGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIP  136 (1051)
T ss_pred             cEEEEEEecCCCCceeEEEECCeecccccccceeee--cCceEecCCcchhhcceeEEEeecccceeeccceeecccccc
Confidence            49999999999999999999999875432   2222  4468888777 899999999999999976553 555554222


Q ss_pred             CCCCCCCCCCCCCccccccceeeecCCCCCCCeee-ecCCcceeCCCCeEEEEEEE-ccCCCCeEEEEECCEEcc---cc
Q psy2775         205 PKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DR  279 (785)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~G~~~~l~C~~-~g~p~~~v~W~~~~~~l~---~~  279 (785)
                                                      .|. .......+.+|+.+.|.|.. .++|.+.+.|..+...-.   ..
T Consensus       137 --------------------------------~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~  184 (1051)
T KOG3513|consen  137 --------------------------------KFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDN  184 (1051)
T ss_pred             --------------------------------cCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCc
Confidence                                            111 23346788899999999987 567888999998654322   33


Q ss_pred             eEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce---EEEEEEEEe------ccccceee-eccceeEeeCccEEEEEE
Q psy2775         280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV---ESAANLNVD------QGKAEFIK-KLDDLEVKERENAVLEVE  349 (785)
Q Consensus       280 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~---~~~~~l~v~------~~~~~~~~-~~~~~~~~~g~~~~l~C~  349 (785)
                      ..........|.|.++..+|.+.|.|.|.+..-..   ...+.|.+.      ..+|.+.. .+.......|+.+.|.|.
T Consensus       185 ~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECf  264 (1051)
T KOG3513|consen  185 RRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECF  264 (1051)
T ss_pred             ceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEE
Confidence            34445566789999999999999999999853221   222555552      22333333 234567789999999999


Q ss_pred             EcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccceEEEEE---EEecCCcccccCCCe
Q psy2775         350 VTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELN---VVELPPEISVPLQDV  425 (785)
Q Consensus       350 ~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~---v~~~~~~~~~~~~~~  425 (785)
                      +.+ |-|+++|+|.+.... ..+......+.  .|.|.++..+|+|.|+|.|.|..|.....   .+..+|.+...+.+.
T Consensus       265 A~G~P~P~i~W~k~~g~~~-~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~  341 (1051)
T KOG3513|consen  265 ALGNPTPQIKWRKVDGKPP-PRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDT  341 (1051)
T ss_pred             ecCCCCCcEEEEeCCCCCC-Ccceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhccccee
Confidence            998 789999999887532 22333333333  49999999999999999999987755433   256788888899999


Q ss_pred             EEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCC---EEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEE
Q psy2775         426 KVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKAT  500 (785)
Q Consensus       426 ~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~  500 (785)
                      .+..|++++|.|.+.+ |.|.|+|++||.++....+   ..+..+    .|+|.+++..|+|.|+|.|+|. |..-+++.
T Consensus       342 ~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~  417 (1051)
T KOG3513|consen  342 EADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIYANAE  417 (1051)
T ss_pred             EecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEeeeeE
Confidence            9999999999999999 8999999999999986665   554332    6999999999999999999998 99999999


Q ss_pred             EEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeee--eeeeeecCeEEE
Q psy2775         501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE--EKTVKEKGTIRL  578 (785)
Q Consensus       501 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~v~l  578 (785)
                      |.|....                                                   |.|...+.  ...+..|.++.|
T Consensus       418 L~V~a~~---------------------------------------------------P~f~~~p~~~~~~a~~g~~v~i  446 (1051)
T KOG3513|consen  418 LKVLASA---------------------------------------------------PVFPLNPVERKVMAVVGGTVTI  446 (1051)
T ss_pred             EEEEccC---------------------------------------------------CCCCCCccceEEEEEeCCeEEE
Confidence            9999874                                                   22222222  236788999999


Q ss_pred             EEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCC
Q psy2775         579 MAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP  658 (785)
Q Consensus       579 ~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~  658 (785)
                      .|...|.|.|.++|.|++..+.++.++.+..+|   +|.|.+++. +|+|.|+|.|+|..|.+..++.|.|+        
T Consensus       447 ~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~-~DaG~YtC~A~N~~G~a~~~~~L~Vk--------  514 (1051)
T KOG3513|consen  447 DCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTR-SDAGKYTCVAENKLGKAESTGNLIVK--------  514 (1051)
T ss_pred             eeccCCCCcceEEEEcCCcccccCceEEECCCC---cEEecccCc-ccCcEEEEEEEcccCccceEEEEEEe--------
Confidence            999999999999999999977777766554433   599999999 99999999999999999999999998        


Q ss_pred             CccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECCEEee
Q psy2775         659 INSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNGTVIV  736 (785)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~  736 (785)
                                                       .+++|.. .+....+..|+.++|+|.+.-.|..  .|.|.+||..+.
T Consensus       515 ---------------------------------d~tri~~-~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id  560 (1051)
T KOG3513|consen  515 ---------------------------------DATRITL-APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPID  560 (1051)
T ss_pred             ---------------------------------cCceEEe-ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhh
Confidence                                             6777776 6777789999999999998766644  789999999876


Q ss_pred             ecc---ccccchh-hhcccccceeeeeeceEEEEEEe
Q psy2775         737 PSK---RVKGKAE-FIKKLDDLEVKERENAVLEVEVT  769 (785)
Q Consensus       737 ~~~---~~~~~~~-~~~~l~~~~v~~~~~~~~~c~~~  769 (785)
                      ...   ++.+... -...|++..+...|+|.|.|.+.
T Consensus       561 ~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aq  597 (1051)
T KOG3513|consen  561 FNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQ  597 (1051)
T ss_pred             ccCCCCceEEeCCcCccceEEEeeccccCceEEEEEE
Confidence            543   2222111 00358899999999999999985

>KOG4221|consensus

Probab=100.00  E-value=1e-42  Score=371.13  Aligned_cols=546  Identities=22%  Similarity=0.283  Sum_probs=396.7

Q ss_pred             cccccccCCCCeeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcc
Q psy2775           3 SLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus         3 s~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      ++.++-...+-.|..+|++.  .+|.++.|.|.....  +.+.|.|.+||..+...  ++.....++       .|.|.+
T Consensus        32 ~~~~~~~~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg-------Sl~i~~  102 (1381)
T KOG4221|consen   32 TGKSIQANTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG-------SLYISS  102 (1381)
T ss_pred             chhhhhccCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC-------ceeEee
Confidence            34445556777888888844  999999999998433  47899999999876543  333222232       266666


Q ss_pred             cCC-----CCCeEEEEEEEcC-Cee-EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECC
Q psy2775          79 IKK-----REEGVYTVVAKNR-EGE-AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG  151 (785)
Q Consensus        79 ~~~-----~D~G~Y~C~a~~~-~~~-~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g  151 (785)
                      +..     -|+|.|+|.|.-. .|. .+..+.|.+.    ..+.+.....+..+..|+++.|.|.+.+.|.+.+.|.+|.
T Consensus       103 v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a----~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~  178 (1381)
T KOG4221|consen  103 VLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALA----GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKND  178 (1381)
T ss_pred             ecccccccccCceEEEEEEccccceeecceEEEEec----ccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccc
Confidence            655     7899999999865 343 3445666665    5667777778899999999999999999888899999999


Q ss_pred             EEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE-EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecC
Q psy2775         152 KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT  230 (785)
Q Consensus       152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (785)
                      .++..........+..|.|.++...|.|.|+|.|.+...+.. ..+.|+|..-+..                        
T Consensus       179 ~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~------------------------  234 (1381)
T KOG4221|consen  179 QPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA------------------------  234 (1381)
T ss_pred             ccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc------------------------
Confidence            977765555555566899999999999999999998875433 3477887621100                        


Q ss_pred             CCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc-cceEEEeCCEEEEEEccCCCCCCeEEEEEEEe
Q psy2775         231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN  309 (785)
Q Consensus       231 ~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n  309 (785)
                        -..-.|+..+....+.+|+.+.|.|.+.|.|.|.|+|.|||..+. +.......+...|.|.+++.+|+|.|+|+|+|
T Consensus       235 --~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn  312 (1381)
T KOG4221|consen  235 --LNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATN  312 (1381)
T ss_pred             --ccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecC
Confidence              011235666778889999999999999999999999999999887 32333334466899999999999999999999


Q ss_pred             CCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCC
Q psy2775         310 KEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI  388 (785)
Q Consensus       310 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~  388 (785)
                      ......+++.|+|.. +|.|...+......++.++.|.|.+.+ |-+.+.|+|+|..+..++.+.+..++.   |.|..+
T Consensus       313 ~~D~idasaev~V~a-~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi  388 (1381)
T KOG4221|consen  313 TNDSIDASAEVTVLA-PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGI  388 (1381)
T ss_pred             CCcccccceEEEEEc-CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEE
Confidence            877788889999997 488888888888999999999999988 678999999999988877777777776   778888


Q ss_pred             CCCCceEEEEEEeccceEEE----EEEEecCC-----cccccCCCeEEecCCcEEEEEEEe------CCCceEEEEECCE
Q psy2775         389 SVHDEGEYTCSLPDQETSAE----LNVVELPP-----EISVPLQDVKVSRDEKASFEIELT------KGDALVKWYKDGK  453 (785)
Q Consensus       389 ~~~d~G~Y~C~a~n~~~~~~----~~v~~~~~-----~~~~~~~~~~v~~g~~~~l~C~~~------~~~~~i~W~~~~~  453 (785)
                      -..|.|.|.|.+.|..+.+.    +.++..+.     .+...+.++.+..-+..-+.|++.      ++.+.++|+....
T Consensus       389 ~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~  468 (1381)
T KOG4221|consen  389 VKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVE  468 (1381)
T ss_pred             ecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecC
Confidence            88899999999999776553    32322111     111122333344444555566655      2345688876433


Q ss_pred             EcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEe
Q psy2775         454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL  532 (785)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (785)
                      ..........+..|  -.+++.++...-...++|.|.|. |....++.|.|..++.     .|                 
T Consensus       469 ~~~rer~~~tss~g--~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE-----gp-----------------  524 (1381)
T KOG4221|consen  469 GDVRERLQNTSSPG--IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE-----GP-----------------  524 (1381)
T ss_pred             CchhhhheeccCCc--eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC-----CC-----------------
Confidence            22222222222222  34566666655444455556676 8899999999998752     00                 


Q ss_pred             cCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC----ceEEEeCCEEecCCCCeeEE
Q psy2775         533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRNNKPLLSSPKKREI  608 (785)
Q Consensus       533 ~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~~~~i~~~~~~~~~  608 (785)
                                                        .. +..+..--++|.+...|++    .|+|||..-... +......
T Consensus       525 ----------------------------------~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~  568 (1381)
T KOG4221|consen  525 ----------------------------------VQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKELR  568 (1381)
T ss_pred             ----------------------------------cc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCceEE
Confidence                                              11 3344555677888878777    799999766554 3344555


Q ss_pred             eeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEee
Q psy2775         609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE  652 (785)
Q Consensus       609 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  652 (785)
                      .+.....++|..+.. .+.-.|+|+|.|.+|...++..|.|.-.
T Consensus       569 ~~~n~~e~ti~gL~k-~TeY~~~vvA~N~~G~g~sS~~i~V~Tl  611 (1381)
T KOG4221|consen  569 VENNATEYTINGLEK-YTEYSIRVVAYNSAGSGVSSADITVRTL  611 (1381)
T ss_pred             EecCccEEEeecCCC-ccceEEEEEEecCCCCCCCCCceEEEec
Confidence            666777899999999 9999999999999999999988888743

>KOG4222|consensus

Probab=100.00  E-value=1.2e-42  Score=368.37  Aligned_cols=457  Identities=27%  Similarity=0.425  Sum_probs=357.7

Q ss_pred             cccccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC----CCCEEEeecCCccceEEEEEEcc--
Q psy2775           5 ADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE----TDEVVFSDQSDMHSYVSIVTIKS--   78 (785)
Q Consensus         5 ~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~--   78 (785)
                      +..-...||+|+.-|.++.|..|+.++|.|.++|.|+|+|+|||+|.....    +.++.+.. +..    ..|++.+  
T Consensus        24 ~~r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~-gsL----f~l~~ahg~   98 (1281)
T KOG4222|consen   24 SLRAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPD-GSL----FLLRLAHGK   98 (1281)
T ss_pred             ccccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCC-ccE----EEEecccCC
Confidence            344567899999999999999999999999999999999999999964322    22222221 111    1133221  


Q ss_pred             cCCCCCeEEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEccc
Q psy2775          79 IKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD  156 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~  156 (785)
                      ....|.|.|.|+|+|..|...+ ...|.+..   .+-.+...+..+.+..|+.+.|.|.- .|.|.+.+.|.|||.++..
T Consensus        99 ~a~~d~G~y~cvasn~~g~avSr~a~L~vav---lrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~  175 (1281)
T KOG4222|consen   99 KAGHDHGVYSCVASNRLGEAVSRGASLIVAV---LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH  175 (1281)
T ss_pred             cccCCCceeEeeecCccceeeecCceEEEEE---echhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc
Confidence            1223999999999999886543 34455443   23345566677888899999999986 6789999999999999873


Q ss_pred             c--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCC
Q psy2775         157 R--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP  233 (785)
Q Consensus       157 ~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (785)
                      .  .+...-....|.|.+++..|.|.|.|.+.|..|..++. +.|.|.                                
T Consensus       176 ~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~--------------------------------  223 (1281)
T KOG4222|consen  176 YDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ--------------------------------  223 (1281)
T ss_pred             ccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec--------------------------------
Confidence            3  33333334479999999999999999999999987765 788887                                


Q ss_pred             CCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCc
Q psy2775         234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT  313 (785)
Q Consensus       234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  313 (785)
                      .+|.+...+....+..|..+.+.|.+.|.|.+++.|.+++..+...+......+.+|.|.+++..|.|.|.|.+.|..|.
T Consensus       224 e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~  303 (1281)
T KOG4222|consen  224 EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGG  303 (1281)
T ss_pred             cCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccc
Confidence            44678888888999999999999999999999999999888887555555555669999999999999999999999999


Q ss_pred             eEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEc--------CCCCcEEEEEcCcEEEEE
Q psy2775         314 VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEI--------KTSKKVTIEKKGTIRKLL  384 (785)
Q Consensus       314 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l--------~~~~~~~~~~~~~~~~l~  384 (785)
                      ...+..++|.. ++.|...+.+..+..|..++|.|.+.+ |++.+.|.+.|...        ..+.+..+...+.   |+
T Consensus       304 l~asa~ltV~a-pP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~---L~  379 (1281)
T KOG4222|consen  304 LEASATLTVQA-PPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGT---LT  379 (1281)
T ss_pred             cccccceEEec-CcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCC---cc
Confidence            99999999996 788888888899999999999999987 78899999876432        1122555555564   99


Q ss_pred             EcCCCCCCceEEEEEEeccceE----EEEEE-----E-ecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCE
Q psy2775         385 IRNISVHDEGEYTCSLPDQETS----AELNV-----V-ELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGK  453 (785)
Q Consensus       385 i~~~~~~d~G~Y~C~a~n~~~~----~~~~v-----~-~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~  453 (785)
                      |.++...|.|.|.|...+..++    +.+.+     . ..|+.|...+.+..+.++..+.|.|.+.+ +.+.+.|++++-
T Consensus       380 it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~  459 (1281)
T KOG4222|consen  380 ITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGC  459 (1281)
T ss_pred             cccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhccc
Confidence            9999999999999996553221    11221     1 24566666777788888999999999998 789999999988


Q ss_pred             EcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCc
Q psy2775         454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPA  507 (785)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~  507 (785)
                      .+...+.......  ...|+|.+....|.|.|+|.|.+. |...-++.|+|...-
T Consensus       460 ~v~~~d~~~s~~~--~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~  512 (1281)
T KOG4222|consen  460 NVMNPDSRISQQE--IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAG  512 (1281)
T ss_pred             ccccCCcccceee--eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcC
Confidence            7755442222211  247999999999999999999997 888889999998764

>KOG4221|consensus

Probab=100.00  E-value=7.3e-39  Score=341.78  Aligned_cols=524  Identities=21%  Similarity=0.291  Sum_probs=363.5

Q ss_pred             ccCCcEEEEEEEec--cCCCeEEEeECCEEcccc--eEEEeCCEEEEEEcccCC-----CCcEEEEEEEEcC-CeeE-EE
Q psy2775         126 TEGESAVLSVQVGG--EPSPKVEWYKDGKLIKDR--QITSEKNTHTLTLIQCST-----KDKGRYSVKVTNK-EGTV-ES  194 (785)
Q Consensus       126 ~~G~~v~l~C~~~g--~p~~~v~W~~~g~~~~~~--~~~~~~~~~~L~i~~~~~-----~d~G~Y~C~a~n~-~g~~-~~  194 (785)
                      .+|..+.|.|....  .+.+.|.|.+||..+...  .....-.+.+|.|.++..     -+.|.|+|.|.-. .|.. +.
T Consensus        52 ~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr  131 (1381)
T KOG4221|consen   52 MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSR  131 (1381)
T ss_pred             ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecc
Confidence            78999999999743  246799999999887643  112222334677776665     8899999999865 3333 33


Q ss_pred             EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCE
Q psy2775         195 AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK  274 (785)
Q Consensus       195 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~  274 (785)
                      .+.|.+..                                .+.+...+.+..+..|+.+.|.|.+.+.|.+.+.|.+++.
T Consensus       132 ~a~v~~a~--------------------------------~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~  179 (1381)
T KOG4221|consen  132 TAKVALAG--------------------------------LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQ  179 (1381)
T ss_pred             eEEEEecc--------------------------------cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccc
Confidence            45555542                                2345566667889999999999999999989999999998


Q ss_pred             EcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce-EEEEEEEEeccc-----cceeeeccceeEeeCccEEEEE
Q psy2775         275 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV-ESAANLNVDQGK-----AEFIKKLDDLEVKERENAVLEV  348 (785)
Q Consensus       275 ~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~-----~~~~~~~~~~~~~~g~~~~l~C  348 (785)
                      ++.............|.|.++.+.|.|.|+|.+++..... +..+.|+|...+     ..|...+....+.+|+++.|.|
T Consensus       180 pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC  259 (1381)
T KOG4221|consen  180 PLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC  259 (1381)
T ss_pred             cccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence            7773223344445689999999999999999999875433 334677776222     2255667778899999999999


Q ss_pred             EEcC-CCCeEEEEECCEEcCCCC-cEEEEEcCcEEEEEEcCCCCCCceEEEEEEec--c--ceEEEEEEEecCCcccccC
Q psy2775         349 EVTS-DKADVKWFKDGQEIKTSK-KVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD--Q--ETSAELNVVELPPEISVPL  422 (785)
Q Consensus       349 ~~~~-~~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n--~--~~~~~~~v~~~~~~~~~~~  422 (785)
                      .+.+ +.|.++|.+||..+..+. ++.....+.   |.|.+++..|+|.|+|+|.|  +  ...+++.|.. ||.+...+
T Consensus       260 vvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~s---lliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a-~P~~~~~p  335 (1381)
T KOG4221|consen  260 VVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSS---LLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA-PPGFTKAP  335 (1381)
T ss_pred             EecCCCCCceEEeeCCeeeeecceEEEEecccc---eEEeccccccCceEEEEecCCCcccccceEEEEEc-CCCCCCCC
Confidence            9998 789999999999998766 333333333   99999999999999999998  3  3455666665 58888888


Q ss_pred             CCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEE
Q psy2775         423 QDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKAT  500 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~  500 (785)
                      ......++.++.|.|.+.+ +.+.+.|+|||..+..++.+++..+++   |.|..+-..|.|.|+|.+.|. |.....+.
T Consensus       336 ~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~  412 (1381)
T KOG4221|consen  336 TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQ  412 (1381)
T ss_pred             cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhh
Confidence            8888999999999999998 788999999999988888888776664   888888889999999999998 88888888


Q ss_pred             EEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEE
Q psy2775         501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMA  580 (785)
Q Consensus       501 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C  580 (785)
                      |.|...+..     +.                                  ....+.+++.++..+.......- +....|
T Consensus       413 l~vv~~p~~-----~~----------------------------------s~~~~sap~~lv~~~~~srfi~~-tw~~p~  452 (1381)
T KOG4221|consen  413 LEVVPQPAS-----AS----------------------------------SDLLPSAPRDLVANLVSSRFIQL-TWRPPA  452 (1381)
T ss_pred             heeccCCcc-----cc----------------------------------cCccccCCcceecccccceeEEE-eecCcc
Confidence            866544211     00                                  00001111222222211111111 112556


Q ss_pred             EEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCc
Q psy2775         581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN  660 (785)
Q Consensus       581 ~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~  660 (785)
                       ..+.+.+.++||+....... .+.......+ ..+.+.++.. .-.-.+.|.|.|..|....++.|.|.-         
T Consensus       453 -~~~g~i~~~~v~~~~~~~~r-er~~~tss~g-~~~tv~nl~p-~t~Y~~rv~A~n~~g~g~sS~pLkV~t---------  519 (1381)
T KOG4221|consen  453 -QISGNISTYTVFYKVEGDVR-ERLQNTSSPG-IQVTVQNLSP-LTMYFFRVRAKNEAGSGESSAPLKVTT---------  519 (1381)
T ss_pred             -ccCCCcceEEEEEecCCchh-hhheeccCCc-eEEEeeeccc-ceeEEEEEeccCcccCCccCCceEEec---------
Confidence             55567788999874432211 1222222223 5577777755 433444566679999999999999982         


Q ss_pred             cccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC----ceEEeECCEEee
Q psy2775         661 SIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP----KAEWTVNGTVIV  736 (785)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p----~i~W~~~~~~~~  736 (785)
                                                      +|.    .+  .....+.+.-+.|.+.+.|++    .|.||+..-...
T Consensus       520 --------------------------------~pE----gp--~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~  561 (1381)
T KOG4221|consen  520 --------------------------------QPE----GP--VQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED  561 (1381)
T ss_pred             --------------------------------CCC----CC--ccccccccCcceEEEEecCCCCCCCCceEEEEEEEcC
Confidence                                            222    01  114456777889999999988    899998765544


Q ss_pred             -eccccccchhhhcccccceeeeeeceEEEEEEec--------ccceeEEeec
Q psy2775         737 -PSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTS--------DKADVKWFKN  780 (785)
Q Consensus       737 -~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~--------~~~~~~w~~~  780 (785)
                       .+....+.. -...+++..++......|.|.+.+        ..+.|.|.-+
T Consensus       562 ~~~~~~~~~~-n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd  613 (1381)
T KOG4221|consen  562 DTGKELRVEN-NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSD  613 (1381)
T ss_pred             CCCceEEEec-CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccC
Confidence             111111111 112566777778888899998863        4457777654

>KOG4222|consensus

Probab=100.00  E-value=1.6e-40  Score=352.33  Aligned_cols=445  Identities=25%  Similarity=0.412  Sum_probs=347.0

Q ss_pred             CCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc-----cceEEEeCCEEEEEEccC-----CCCCCeEE
Q psy2775         234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTHTLTLIQC-----STKDKGRY  303 (785)
Q Consensus       234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~-----~~~~~~~~~~~~l~i~~~-----~~~d~G~Y  303 (785)
                      .+|.|+.++....+..|+.++|.|.+.|.|+|+|+|+|+|....     ..++..-.+  +|.+..+     ...|.|.|
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~g--sLf~l~~ahg~~a~~d~G~y  107 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDG--SLFLLRLAHGKKAGHDHGVY  107 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCc--cEEEEecccCCcccCCCcee
Confidence            57899999999999999999999999999999999999996544     222222222  2333221     22389999


Q ss_pred             EEEEEeCCCceEE-EEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCC--CCcEEEEEcC
Q psy2775         304 SVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKT--SKKVTIEKKG  378 (785)
Q Consensus       304 ~C~~~n~~g~~~~-~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~--~~~~~~~~~~  378 (785)
                      +|.+.|..|...+ ...|.+......|...+....+..|+.+.|.|.-..  +.+.+.|.|+|+++..  ...+.+...|
T Consensus       108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG  187 (1281)
T KOG4222|consen  108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG  187 (1281)
T ss_pred             EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC
Confidence            9999999887654 366776666677777777788889999999998754  5789999999999873  3355556666


Q ss_pred             cEEEEEEcCCCCCCceEEEEEEeccce-----EEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECC
Q psy2775         379 TIRKLLIRNISVHDEGEYTCSLPDQET-----SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG  452 (785)
Q Consensus       379 ~~~~l~i~~~~~~d~G~Y~C~a~n~~~-----~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~  452 (785)
                      .   |.|.+++..|.|.|.|.+.|..+     .++++|.+ +|.+..++.+..+..|..+.+.|.+.+ |.|.+.|.+++
T Consensus       188 ~---LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~  263 (1281)
T KOG4222|consen  188 N---LLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDD  263 (1281)
T ss_pred             c---EEEeccccCCCceeeeeecccccccccccceeeecc-CCccccccccceeecccccccccccCCCCCCceeeeccC
Confidence            6   99999999999999999998544     34455544 678888889999999999999999998 78899999977


Q ss_pred             EEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEE
Q psy2775         453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE  531 (785)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (785)
                      ..++. .++.+..+.  .+|.|..++..|.|.|.|.|.|. |+...++.|+|+++                         
T Consensus       264 ~~~P~-~ry~i~~d~--qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap-------------------------  315 (1281)
T KOG4222|consen  264 PSLPR-SRYSILDDT--QTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP-------------------------  315 (1281)
T ss_pred             CCCCc-cceeeeecc--ccccccccCCCcccceeeeccccccccccccceEEecC-------------------------
Confidence            76644 345555443  47999999999999999999998 99999999999987                         


Q ss_pred             ecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC------CCe
Q psy2775         532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS------PKK  605 (785)
Q Consensus       532 ~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~------~~~  605 (785)
                                                 |.|...+.++++..|..++|.|.+.|+|.|.+.|.|.|....-.      .+.
T Consensus       316 ---------------------------P~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~  368 (1281)
T KOG4222|consen  316 ---------------------------PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNG  368 (1281)
T ss_pred             ---------------------------cccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCc
Confidence                                       66666677889999999999999999999999999987643211      111


Q ss_pred             eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeee
Q psy2775         606 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD  685 (785)
Q Consensus       606 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (785)
                      +-.. ....+|+|.+++. .|.|.|.|...+..|+...-+.+.+...-                                
T Consensus       369 r~sv-s~~g~L~it~v~~-~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~--------------------------------  414 (1281)
T KOG4222|consen  369 RGSV-SPTGTLTITNVRQ-SDEGYYVCQTQTSAGSSLTKAYLEQTDVL--------------------------------  414 (1281)
T ss_pred             ccee-cCCCCcccccccc-cccceEeecccccccccccceeEEEEeee--------------------------------
Confidence            1111 1223799999999 99999999999999988777666664211                                


Q ss_pred             ecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCCceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEE
Q psy2775         686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLE  765 (785)
Q Consensus       686 ~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~  765 (785)
                         .-..||-+......+.+..+|.++.|-|.++|.|.|.+.|+++|-.+...+..... -.+..|++......|.|.|+
T Consensus       415 ---~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~-~~~~~l~i~dl~~~DtG~YT  490 (1281)
T KOG4222|consen  415 ---TDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ-QEIGSLRIRDLKGPDTGRYT  490 (1281)
T ss_pred             ---ccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce-eeeceeeeeeeecCCCccee
Confidence               11023333344666677778999999999999999999999999988887743333 23346888888999999999


Q ss_pred             EEEecccceeEE
Q psy2775         766 VEVTSDKADVKW  777 (785)
Q Consensus       766 c~~~~~~~~~~w  777 (785)
                      |..+....+-.|
T Consensus       491 c~as~~~ges~w  502 (1281)
T KOG4222|consen  491 CIASDESGESTW  502 (1281)
T ss_pred             eeccCccccccc
Confidence            999987766666

>KOG4194|consensus

Probab=99.97  E-value=1.3e-30  Score=259.33  Aligned_cols=306  Identities=24%  Similarity=0.377  Sum_probs=236.2

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEe--cCCCeeEEEECCEEccCCC---CEEEeec------CCccceEEEEEEcc
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVA--VPEPDLLWYYNGEPLQETD---EVVFSDQ------SDMHSYVSIVTIKS   78 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g--~p~~~i~W~~~~~~~~~~~---~~~~~~~------~~~~~~~~~L~i~~   78 (785)
                      -..|+|...|..+....|.+++|+|.+.+  ..+.++.|.+++.....-.   ...+...      +....+.+.|++.+
T Consensus       501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            35688999999999999999999999966  3557899999886432211   1111111      22233567899999


Q ss_pred             cCCCCCeEEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEE-ccc
Q psy2775          79 IKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL-IKD  156 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~-~~~  156 (785)
                      |...|+|.|+|+++|..|+.. ..++++|.    ..|.+...+.+.++..|+...|.|.++|.|.|+|.|.|+|.. .+.
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~----~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA  656 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVN----QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA  656 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEee----ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch
Confidence            999999999999999999754 46778887    689999999999999999999999999999999999998765 443


Q ss_pred             c---eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCC
Q psy2775         157 R---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP  233 (785)
Q Consensus       157 ~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (785)
                      .   .+..-.....+.|.+++.+|+|.|+|.|.|.+|..+.+++|.|.+.                              
T Consensus       657 A~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~------------------------------  706 (873)
T KOG4194|consen  657 ARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET------------------------------  706 (873)
T ss_pred             hhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecC------------------------------
Confidence            2   2222233446889999999999999999999999999999999843                              


Q ss_pred             CCCeeeecCCcceeCCCCeEEEEEEEccCCC-CeEEEEECCEEcc-cceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy2775         234 EKPSILEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE  311 (785)
Q Consensus       234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-~~v~W~~~~~~l~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~  311 (785)
                        |.+..++.+..+..|+.+.|.|.+.+.|+ |...|+|+++++. ..+....+++..|.+.+...+|.|.|+|.+.|..
T Consensus       707 --p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~  784 (873)
T KOG4194|consen  707 --PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTL  784 (873)
T ss_pred             --CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeec
Confidence              55666777889999999999999999887 8999999998876 3334455667789999999999999999999998


Q ss_pred             CceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEc
Q psy2775         312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT  351 (785)
Q Consensus       312 g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  351 (785)
                      |.......+.+...+......-....+....-+.+.|.+.
T Consensus       785 ~~~~~~i~l~~~~~~~~~~Se~~~Tq~~~riia~vs~~vd  824 (873)
T KOG4194|consen  785 GTERIHICLLVYQKKKCRMSEDGSTQVGIRIIAVVSCSVD  824 (873)
T ss_pred             cceeeEEEEEEeecCCcccccCCccEEEEEEEEEEeeeec
Confidence            8877777766665444333221112233333444556554

>KOG4194|consensus

Probab=99.96  E-value=2.9e-29  Score=249.82  Aligned_cols=266  Identities=21%  Similarity=0.307  Sum_probs=206.9

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeCC---CceEEEEECCEEcccCC-----CEEEE--------EeCcEEEEEEccCC
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTKG---DALVKWYKDGKEIAFSE-----NVTLS--------IDGKKQKLIIFSAG  478 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~~~~~~~~-----~~~~~--------~~~~~~~L~i~~~~  478 (785)
                      .|.|...|.+.....|+.++|+|.+.++   +..+.|.++++..+..+     .+...        .......|.+.+++
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            4666677777778899999999999883   45799999876332211     11000        01125689999999


Q ss_pred             CCCcEEEEEEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         479 LEDAGEYSCRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      ..|.|.|+|+++|. |+. +..+.|+|...                                                  
T Consensus       583 ~td~grYQCVvtN~FGStysqk~KltV~~~--------------------------------------------------  612 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQA--------------------------------------------------  612 (873)
T ss_pred             cccCceEEEEEecccCcchhheeEEEeecc--------------------------------------------------
Confidence            99999999999998 654 44577887764                                                  


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEE-ecCC--CCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP-LLSS--PKKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~-i~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                        |.|...+.+.++..|+.++|.|.|+|.|.|+|.|-|+|.+ .+..  .|.+++.+++  .+.|.++.. +|+|.|+|+
T Consensus       613 --PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~-eD~GiYtC~  687 (873)
T KOG4194|consen  613 --PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKI-EDQGIYTCT  687 (873)
T ss_pred             --CccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccc-cccceeEEe
Confidence              7777778899999999999999999999999999998765 4332  2334444444  388999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEE
Q psy2775         634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK  713 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~  713 (785)
                      |.|.+|....+++|.|.                                         ..|.+.. +..+..+..|+++.
T Consensus       688 A~n~AG~isanAtL~V~-----------------------------------------e~p~f~~-PL~~~~V~~get~v  725 (873)
T KOG4194|consen  688 AQNVAGQISANATLTVL-----------------------------------------ETPSFSI-PLEDQLVVVGETLV  725 (873)
T ss_pred             eeccccceeeceEEEEe-----------------------------------------cCCcccc-cccceEEEecceEE
Confidence            99999999999999997                                         3444443 35667788999999


Q ss_pred             EEEEEecCCC-CceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEEEEEeccc--ceeEEe
Q psy2775         714 IEVRFKALPP-PKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWF  778 (785)
Q Consensus       714 l~C~~~g~P~-p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~~~--~~~~w~  778 (785)
                      |.|.+.|.|+ |.+.|+|.+++|.-..+...++.-+ -|..++....|.|.|+|+++...  --.+|+
T Consensus       726 lqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQ-llvv~~~~~~daG~yTcem~~~~~~~~~~i~  792 (873)
T KOG4194|consen  726 LQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQ-LLVVKENLVEDAGIYTCEMSNTLGTERIHIC  792 (873)
T ss_pred             EEEecCCCCCCccccccCCCCceEEeecccCCCCCe-EEEEEehhhhhcceEEEEEEeeccceeeEEE
Confidence            9999999887 9999999999999988877765433 45566667889999999999733  345554

>KOG3515|consensus

Probab=99.96  E-value=5.3e-28  Score=254.75  Aligned_cols=595  Identities=15%  Similarity=0.161  Sum_probs=364.8

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEecCC-CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      +....+|.....+-+..+++|++|.|.|.+.+.|+ +.+.|++.++.+.  .++....+       .+|......++.-+
T Consensus         2 l~~p~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~   72 (741)
T KOG3515|consen    2 LFPPNVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATIAD-------PTLVTTGDVRDTVA   72 (741)
T ss_pred             CcCCCCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--cccccccC-------Cceeeecchhhhhh
Confidence            45566777777766669999999999999977654 7899999988766  22222111       34888888888999


Q ss_pred             EEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE--eccCCCeEEEeECCEEcccce---E
Q psy2775          86 VYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV--GGEPSPKVEWYKDGKLIKDRQ---I  159 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~--~g~p~~~v~W~~~g~~~~~~~---~  159 (785)
                      .|.|++.|..+... ....+.+.    .+|.-...........+..+.+.|.+  .+.|.+.+.|..++.......   .
T Consensus        73 ~~~c~a~ns~~~~~~~~~~l~v~----~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~  148 (741)
T KOG3515|consen   73 ELNCRAFNSVGMPSRCPMILDVD----YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRG  148 (741)
T ss_pred             hhhhhhcccccCceecceeeccc----cCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcc
Confidence            99999999855433 23344444    34433333344455678889999966  456778999999876543221   0


Q ss_pred             E--------EeCCEEEEEEcccCCCCcEEEEEEEEcCC---eeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeee
Q psy2775         160 T--------SEKNTHTLTLIQCSTKDKGRYSVKVTNKE---GTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV  228 (785)
Q Consensus       160 ~--------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (785)
                      .        .....+.+.+...+.++.|.|+|.|.+..   +.......+.|....                        
T Consensus       149 ~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~------------------------  204 (741)
T KOG3515|consen  149 RVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC------------------------  204 (741)
T ss_pred             cccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc------------------------
Confidence            0        10223457888888999999999999853   333333444443221                        


Q ss_pred             cCCCCCCCeeeecCCcceeCCCCeEEEEEEE-ccCCCCeEEEEECCEEcccc-eEEEeC----CEEEEEEccCCCCCCeE
Q psy2775         229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDR-QITSEK----NTHTLTLIQCSTKDKGR  302 (785)
Q Consensus       229 ~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~-~~~~~~----~~~~l~i~~~~~~d~G~  302 (785)
                           ....+.....-..+.+|+.+.|.|.+ .|+|.+.++|+++...+... ......    ..+.+....-..++...
T Consensus       205 -----~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~  279 (741)
T KOG3515|consen  205 -----KGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQ  279 (741)
T ss_pred             -----ccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhh
Confidence                 01111222222567899999999977 56899999999987766532 111111    12234444444445566


Q ss_pred             EEEEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEE--EEcC
Q psy2775         303 YSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTI--EKKG  378 (785)
Q Consensus       303 Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~--~~~~  378 (785)
                      ..|.+.|.   ...+..+.+...+...........+..|....+.|...+  +++.+.|+++............  ...+
T Consensus       280 ~kc~a~n~---~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~  356 (741)
T KOG3515|consen  280 LKCKASNL---LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMG  356 (741)
T ss_pred             hhccccCc---cccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCccc
Confidence            67999982   222233334433333333334445788899999888765  5779999996554433221111  0111


Q ss_pred             --cEEEEEEcCCCCCCceEEEEEEeccceE------EEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC--CCceEEE
Q psy2775         379 --TIRKLLIRNISVHDEGEYTCSLPDQETS------AELNVVELPPEISVPLQDVKVSRDEKASFEIELTK--GDALVKW  448 (785)
Q Consensus       379 --~~~~l~i~~~~~~d~G~Y~C~a~n~~~~------~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~i~W  448 (785)
                        ....+........|.|.|.|.+.+....      ..+.+...|..+......+...+++.....-.+.+  ..+.+.|
T Consensus       357 ~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w  436 (741)
T KOG3515|consen  357 GVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYW  436 (741)
T ss_pred             ceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhh
Confidence              1233667778889999999999875421      12223333333333444455556665554444444  3557999


Q ss_pred             EECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCcee
Q psy2775         449 YKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT  527 (785)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~  527 (785)
                      ++.+.++.....-....-.......+.++...|.|.|.|.|+|. |+......+.+...+..                  
T Consensus       437 ~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~------------------  498 (741)
T KOG3515|consen  437 TFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHN------------------  498 (741)
T ss_pred             eecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcc------------------
Confidence            99998886655433322222233446678899999999999997 77777777666655321                  


Q ss_pred             EEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCCCC-
Q psy2775         528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPK-  604 (785)
Q Consensus       528 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~~-  604 (785)
                                                        ...........|+++.+.|..+..|.-  .+.|.+.+.+...... 
T Consensus       499 ----------------------------------~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~  544 (741)
T KOG3515|consen  499 ----------------------------------HHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQ  544 (741)
T ss_pred             ----------------------------------cccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccc
Confidence                                              111113345667789999999887665  7999998876532211 


Q ss_pred             -eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceee
Q psy2775         605 -KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTE  683 (785)
Q Consensus       605 -~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (785)
                       ...........+.+..... .-++.|.|.+.|..--+.....+.+.                                 
T Consensus       545 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~pA~~~~~l~~~---------------------------------  590 (741)
T KOG3515|consen  545 DAPQQQLMAHAQLLVSGNSS-LQASETACVVDGSSPPAGLSLVLKAY---------------------------------  590 (741)
T ss_pred             cccccccCCccceeeccccc-ccccceEEeecCCCCccccceEEEec---------------------------------
Confidence             1111122334566666655 66799999999832223333333332                                 


Q ss_pred             eeecCccccCCCcCCCCCCcEEeecCC-eEEEEEEEecCCCCceEEeECCEEeeeccc
Q psy2775         684 VDVEKPVETAPVIDPPPPPEVLVKKGE-DLKIEVRFKALPPPKAEWTVNGTVIVPSKR  740 (785)
Q Consensus       684 ~~~~~~~~~~P~i~~~~~~~~~~~~g~-~~~l~C~~~g~P~p~i~W~~~~~~~~~~~~  740 (785)
                              .+|.++...+...+..+|. .++.+|.+.|.|.+.++|.|+......+.+
T Consensus       591 --------s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~  640 (741)
T KOG3515|consen  591 --------SALIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPH  640 (741)
T ss_pred             --------ccccccccCCceeeeccCcccccccceecccccceeecccCCCcccCCce
Confidence                    3344433222222222222 789999999999999999999877544443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.95  E-value=4.2e-26  Score=230.67  Aligned_cols=254  Identities=15%  Similarity=0.245  Sum_probs=180.2

Q ss_pred             CCceEecCCCeEEEEEEE-----EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          19 TKPVYAEENSEVTLEVRL-----VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~-----~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      .....+.+|+.+.|.|.+     .|.|.+++.|+|++...   .+......+      +.|.|.++..+|+|.|+|.|.|
T Consensus        33 ~~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g------~~l~i~~~~~~DsG~Y~C~a~N  103 (326)
T PHA02785         33 FASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNG------SNMLILNPTQSDSGIYICITKN  103 (326)
T ss_pred             cchhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCC------ceEEEcccCcccCeEEEEEEEC
Confidence            345677789999999996     68888999999997421   122211111      2378999999999999999999


Q ss_pred             CCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEE-----EeccCCCeEEEeECCEEcccceEEEeCCEEEE
Q psy2775          94 REGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-----VGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL  168 (785)
Q Consensus        94 ~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~-----~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L  168 (785)
                      ..+....++.|.|....  +|.+........+.+|..+.|.|.     ..+.|++.++|++++. +....+.. .....|
T Consensus       104 ~~g~~~~s~~L~V~~~~--~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~-~~~~~L  179 (326)
T PHA02785        104 ETYCDMMSLNLTIVSVS--ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQ-RTPGII  179 (326)
T ss_pred             CCcceEEEEEEEEEecC--CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEe-cCCCeE
Confidence            99887777878776422  233322233455778999999997     2457888999998653 33222222 223579


Q ss_pred             EEcccCCCCcEEEEEEEEcCCeeEEEE----EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCc
Q psy2775         169 TLIQCSTKDKGRYSVKVTNKEGTVESA----ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD  244 (785)
Q Consensus       169 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  244 (785)
                      .|.+++.+|+|.|+|.|.|..|.....    +.|.|....                             .+|.+. .+..
T Consensus       180 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~-----------------------------~pp~~~-~p~~  229 (326)
T PHA02785        180 TIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRI-----------------------------IPPTMQ-LPEG  229 (326)
T ss_pred             EEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccC-----------------------------CCceec-CCCc
Confidence            999999999999999999988765433    334443211                             234433 3356


Q ss_pred             ceeCCCCeEEEEEEEccCCC---CeEEEEECCEEcccc------eEEEeC----------CEEEEEEccCCCCCCeEEEE
Q psy2775         245 VSITEGESAVLSVQVGGEPS---PKVEWYKDGKLIKDR------QITSEK----------NTHTLTLIQCSTKDKGRYSV  305 (785)
Q Consensus       245 ~~~~~G~~~~l~C~~~g~p~---~~v~W~~~~~~l~~~------~~~~~~----------~~~~l~i~~~~~~d~G~Y~C  305 (785)
                      ..+..|+.++|.|.+.|.|.   +.+.|++||..+...      .+....          ....|+|.+++.+|.|.|+|
T Consensus       230 ~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C  309 (326)
T PHA02785        230 VVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTC  309 (326)
T ss_pred             EEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEE
Confidence            67778999999999998886   489999999887521      111111          14579999999999999999


Q ss_pred             EEEeCCCceE
Q psy2775         306 KVTNKEGTVE  315 (785)
Q Consensus       306 ~~~n~~g~~~  315 (785)
                      .|.|..|...
T Consensus       310 ~A~n~~~~~~  319 (326)
T PHA02785        310 MAFTIPSISK  319 (326)
T ss_pred             EEEeccCceE
Confidence            9999874433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.94  E-value=1.7e-24  Score=218.99  Aligned_cols=242  Identities=19%  Similarity=0.240  Sum_probs=172.9

Q ss_pred             cceeCCCCeEEEEEEE-----ccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEE
Q psy2775         244 DVSITEGESAVLSVQV-----GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  318 (785)
Q Consensus       244 ~~~~~~G~~~~l~C~~-----~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  318 (785)
                      .....+|+.+.|.|.+     .|.|.+++.|+|+|..... ... ......|.|.++..+|+|.|+|.+.|..|....++
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-~~~-~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~  112 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-IIP-IDNGSNMLILNPTQSDSGIYICITKNETYCDMMSL  112 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-EEE-ccCCceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence            3456689999999996     6888899999999854321 111 22233588999999999999999999999888888


Q ss_pred             EEEEecccc-ceeeeccceeEeeCccEEEEEEE------cCCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCC
Q psy2775         319 NLNVDQGKA-EFIKKLDDLEVKERENAVLEVEV------TSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH  391 (785)
Q Consensus       319 ~l~v~~~~~-~~~~~~~~~~~~~g~~~~l~C~~------~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~  391 (785)
                      .|.|....+ .+.....+..+.+|..+.|.|..      .++++.++|+++.. + ...++....++   .|.|.+++.+
T Consensus       113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~---~L~i~~v~~~  187 (326)
T PHA02785        113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPG---IITIEDVRKN  187 (326)
T ss_pred             EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCC---eEEEeecChh
Confidence            888875432 23223344567789999999962      24678999987643 3 22344443333   4999999999


Q ss_pred             CceEEEEEEeccceEEE--------EEEE--ecCCcccccCCCeEEecCCcEEEEEEEeC-CC---ceEEEEECCEEccc
Q psy2775         392 DEGEYTCSLPDQETSAE--------LNVV--ELPPEISVPLQDVKVSRDEKASFEIELTK-GD---ALVKWYKDGKEIAF  457 (785)
Q Consensus       392 d~G~Y~C~a~n~~~~~~--------~~v~--~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~---~~i~W~~~~~~~~~  457 (785)
                      |.|.|+|.|.|..+...        +.|.  ..||.+. .+....+..|+.++|.|.+.+ |.   +.+.|++||..+..
T Consensus       188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~  266 (326)
T PHA02785        188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE  266 (326)
T ss_pred             hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence            99999999998544322        2222  1344443 345667778999999999997 43   47999999998854


Q ss_pred             CC-----CEEEEE-----eC---cEEEEEEccCCCCCcEEEEEEEeecC
Q psy2775         458 SE-----NVTLSI-----DG---KKQKLIIFSAGLEDAGEYSCRVGDTG  493 (785)
Q Consensus       458 ~~-----~~~~~~-----~~---~~~~L~i~~~~~~d~G~Y~C~a~n~g  493 (785)
                      .+     ++....     +.   ....|+|.+++.+|+|.|+|.|.|..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~  315 (326)
T PHA02785        267 DDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIP  315 (326)
T ss_pred             cCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEecc
Confidence            32     222111     00   13579999999999999999999974

>KOG3515|consensus

Probab=99.93  E-value=1.5e-24  Score=228.85  Aligned_cols=496  Identities=17%  Similarity=0.177  Sum_probs=307.4

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccC-CCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ..|......-...+..|+.|.|.|.+.++| .+.+.|++.+..+...  .......+|.......+..+.|.|+|.|..+
T Consensus         6 ~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~   83 (741)
T KOG3515|consen    6 NVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGR--YATIADPTLVTTGDVRDTVAELNCRAFNSVG   83 (741)
T ss_pred             CCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccccc--cccccCCceeeecchhhhhhhhhhhhccccc
Confidence            344443333333788999999999997765 5599999988776522  1122234788888888999999999999855


Q ss_pred             eEEE-EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEE--ccCCCCeE
Q psy2775         191 TVES-AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV--GGEPSPKV  267 (785)
Q Consensus       191 ~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~--~g~p~~~v  267 (785)
                      .... ...+.|.                                ++|.-...........+..+.+.|.+  .+.|.+.+
T Consensus        84 ~~~~~~~~l~v~--------------------------------~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nl  131 (741)
T KOG3515|consen   84 MPSRCPMILDVD--------------------------------YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNL  131 (741)
T ss_pred             Cceecceeeccc--------------------------------cCccccccccchhhhcCCeEEEEEeecCCCCCCcce
Confidence            4332 2444443                                22333333334456678889999965  45677899


Q ss_pred             EEEECCEEcccce---EEE-------e-CCEEEEEEccCCCCCCeEEEEEEEeC---CCceEEEEEEEEeccccceeeec
Q psy2775         268 EWYKDGKLIKDRQ---ITS-------E-KNTHTLTLIQCSTKDKGRYSVKVTNK---EGTVESAANLNVDQGKAEFIKKL  333 (785)
Q Consensus       268 ~W~~~~~~l~~~~---~~~-------~-~~~~~l~i~~~~~~d~G~Y~C~~~n~---~g~~~~~~~l~v~~~~~~~~~~~  333 (785)
                      +|..++.......   ...       . .....+.+.....++.|.|+|.|.|.   .+.......+.+......+....
T Consensus       132 rW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~  211 (741)
T KOG3515|consen  132 RWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITG  211 (741)
T ss_pred             eeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecc
Confidence            9999876544110   000       0 12345788888899999999999984   33333344555544333333322


Q ss_pred             --cceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEEEEcCc--EEEEEEcCCCCCCceEEEEEEeccc-eE
Q psy2775         334 --DDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGT--IRKLLIRNISVHDEGEYTCSLPDQE-TS  406 (785)
Q Consensus       334 --~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~-~~  406 (785)
                        ....+.+|+.+.|.|.+.+  |.+.++|+++..............++.  .+.+.+..-..++.-...|.+.|.. ..
T Consensus       212 ~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~  291 (741)
T KOG3515|consen  212 AQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAAS  291 (741)
T ss_pred             hhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccc
Confidence              2256889999999997765  567999999887766542222222221  2234444444444556789999822 22


Q ss_pred             EEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC--CCceEEEEECCEEcccCCCEE----EEEeCcEEEEEEccCCCC
Q psy2775         407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENVT----LSIDGKKQKLIIFSAGLE  480 (785)
Q Consensus       407 ~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~  480 (785)
                      ..+.+...+....+......+..|+...+.|...+  +.+.+.|+++......+....    ....-....+........
T Consensus       292 ~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~  371 (741)
T KOG3515|consen  292 QITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQ  371 (741)
T ss_pred             eeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchh
Confidence            22223233333333444555788999999999887  466799999655432221100    000112345667778889


Q ss_pred             CcEEEEEEEeec-CcceeE--EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCC
Q psy2775         481 DAGEYSCRVGDT-GDKESK--ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQ  557 (785)
Q Consensus       481 d~G~Y~C~a~n~-g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  557 (785)
                      |.|.|+|.|.|. .....+  ..+.+..++.-+....+                                          
T Consensus       372 ~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~------------------------------------------  409 (741)
T KOG3515|consen  372 DGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKT------------------------------------------  409 (741)
T ss_pred             cCceEEccccccccccccccceeccccCCchhhhhccc------------------------------------------
Confidence            999999999986 333333  33334333322221111                                          


Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCC-CceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                               .....+++.....-.+.|+|. +++.|.+.+.++....+.....-......-+.++.. .|.|.|.|+|.|
T Consensus       410 ---------~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~-~d~g~y~~tatn  479 (741)
T KOG3515|consen  410 ---------AVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSR-SDGGSYGLTATN  479 (741)
T ss_pred             ---------ceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeee-ccCCcceeeecc
Confidence                     223333443333333336655 589999999888766554333333333344667888 999999999999


Q ss_pred             CCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEE
Q psy2775         637 ELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEV  716 (785)
Q Consensus       637 ~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C  716 (785)
                      ..|.+.....+.++                                         +.|.+.. ....+....|+.+.+.|
T Consensus       480 s~gg~~~~~~~~~~-----------------------------------------~sp~~~~-~~~~~~~~~~ns~~~~~  517 (741)
T KOG3515|consen  480 SPGGAQAYLLLGVH-----------------------------------------TSPHNHH-LQDQVEGATGNSVDGEC  517 (741)
T ss_pred             CCCceeeEEeeccc-----------------------------------------cCCcccc-cccccccCCCCccccee
Confidence            99988775555444                                         6677654 45556677788899999


Q ss_pred             EEecCCCC--ceEEeECCEEe
Q psy2775         717 RFKALPPP--KAEWTVNGTVI  735 (785)
Q Consensus       717 ~~~g~P~p--~i~W~~~~~~~  735 (785)
                      ...+.|.-  ++.|.+.|...
T Consensus       518 ~q~~~~~~~~m~~~~r~ge~~  538 (741)
T KOG3515|consen  518 MQDEQPQDQQMHHEPRSGEPP  538 (741)
T ss_pred             eccccccchhhhcccccCCCC
Confidence            98887744  68999988765

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.83  E-value=3.5e-19  Score=168.05  Aligned_cols=157  Identities=18%  Similarity=0.171  Sum_probs=116.0

Q ss_pred             CCeEEecCCcEEEEEEEeC------------CCceEEEEECCEEc--ccC-CC---E--EEEE-eCcEEEEEEccCCCCC
Q psy2775         423 QDVKVSRDEKASFEIELTK------------GDALVKWYKDGKEI--AFS-EN---V--TLSI-DGKKQKLIIFSAGLED  481 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~------------~~~~i~W~~~~~~~--~~~-~~---~--~~~~-~~~~~~L~i~~~~~~d  481 (785)
                      ..+.+.+|+++.|.|.+.+            ..+.+.|+|++...  ... .+   .  .... ......|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            5567889999999999754            24589999998652  111 11   0  0000 1123479999999999


Q ss_pred             cEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCe
Q psy2775         482 AGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL  560 (785)
Q Consensus       482 ~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~  560 (785)
                      +|.|+|.|.|. +....++.|.|..+.                                                     
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~-----------------------------------------------------  136 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGT-----------------------------------------------------  136 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCC-----------------------------------------------------
Confidence            99999999997 666777777774321                                                     


Q ss_pred             EeeeeeeeeeeecCeEEEEEEEe-----cCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVK-----ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~-----g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                           .+..+.+|+.++|.|.+.     |.|.|+|+|+|||+++..+.+..  ...+..+|.|.+++. +|+|.|+|.|.
T Consensus       137 -----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~--~~~~~~~L~I~~V~~-~DsG~YtC~a~  208 (227)
T PHA02826        137 -----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ--LRNNNSTLVIKSATH-DDSGIYTCNLR  208 (227)
T ss_pred             -----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE--EeCCCCEEEECcCCH-HhCEEEEEEEE
Confidence                 023567899999999986     34678999999999997665543  233445799999999 99999999999


Q ss_pred             cCCcc
Q psy2775         636 NELGS  640 (785)
Q Consensus       636 n~~g~  640 (785)
                      ..++.
T Consensus       209 ~~~~g  213 (227)
T PHA02826        209 FNKNS  213 (227)
T ss_pred             EeECC
Confidence            87644

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.82  E-value=1.7e-19  Score=170.17  Aligned_cols=156  Identities=12%  Similarity=0.161  Sum_probs=117.7

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCC-----------ceEEEeCCEEe--cC-CCCe--e-EEe---eCCeEEEEEccCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAP-----------SIVWFRNNKPL--LS-SPKK--R-EIF---DGENIILELKEADSE  624 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p-----------~v~W~~~~~~i--~~-~~~~--~-~~~---~~~~~~L~i~~~~~~  624 (785)
                      +....+.+|+++.|.|.+.++|+|           .|.|+|++...  .. +.+.  . +..   ......|.|.+++. 
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~-  107 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN-  107 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh-
Confidence            346789999999999999887643           89999988652  11 1110  0 000   12245799999999 


Q ss_pred             CCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcE
Q psy2775         625 TDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV  704 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~  704 (785)
                      +|+|.|+|.|.|..|..+.++.|.|.                                         .++       ...
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~-----------------------------------------~~~-------~~~  139 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTFD-----------------------------------------SGT-------INY  139 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEEe-----------------------------------------cCC-------ccc
Confidence            99999999999999888777777764                                         111       122


Q ss_pred             EeecCCeEEEEEEEe-----cCCCCceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEEEEEec
Q psy2775         705 LVKKGEDLKIEVRFK-----ALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTS  770 (785)
Q Consensus       705 ~~~~g~~~~l~C~~~-----g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~  770 (785)
                      .+..|+.++|.|.+.     |.|.|+|+|+|||..|..+.++.+... ...|.+..|..+|+|.|+|++..
T Consensus       140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~-~~~L~I~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN-NSTLVIKSATHDDSGIYTCNLRF  209 (227)
T ss_pred             eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCC-CCEEEECcCCHHhCEEEEEEEEE
Confidence            467899999999986     356899999999999987777654422 23699999999999999999985

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.77  E-value=5.5e-18  Score=138.21  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=83.2

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.|+..+++..+..|+.++|.|.+.|.|+|++.|+|+|.++..+.++.+......+.|.|.++.. +|+|.|+|.|+|..
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~-~D~G~Ytc~a~N~~   79 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQ-EHCGCYTLEVENKL   79 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCCh-hhCEEEEEEEEcCC
Confidence            56788888999999999999999999999999999999999877777777767788999999999 99999999999999


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |...+++.|.|.
T Consensus        80 G~~~~~~~l~V~   91 (98)
T cd05762          80 GSRQAQVNLTVV   91 (98)
T ss_pred             CceeEEEEEEEe
Confidence            999998888876

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.70  E-value=1.1e-16  Score=127.96  Aligned_cols=88  Identities=22%  Similarity=0.349  Sum_probs=76.5

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      +|.|...+.+..+.+|+.++|.|.+.|+|.|.|+|+|++..+....+  +...  ...|.|.++.. +|+|.|+|.|.|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~--~~~~--~~~L~I~~v~~-~D~G~Y~C~A~N~   75 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE--ISMS--GAVLKIFNIQP-EDEGTYECEAENI   75 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCE--EecC--CCEEEECcCCh-hhCEEEEEEEEcC
Confidence            48888899999999999999999999999999999999988765432  2222  34699999999 9999999999999


Q ss_pred             CcceEEEEEEEEE
Q psy2775         638 LGSATHGARVTVD  650 (785)
Q Consensus       638 ~g~~~~~~~l~V~  650 (785)
                      .|....++.|.|+
T Consensus        76 ~G~~~~~~~l~V~   88 (88)
T cd05851          76 KGKDKHQARVYVQ   88 (88)
T ss_pred             CCceEEEEEEEEC
Confidence            9999999998874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.69  E-value=5e-16  Score=126.67  Aligned_cols=92  Identities=16%  Similarity=0.267  Sum_probs=83.2

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |.|...|+.+.+.+|+++.|.|.+.|.|++.+.|+|++..|..+.++.+....+.    +.|+|.++..+|+|.|+|.|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~----s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENS----SKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCe----eEEEECCCChhhCEEEEEEEE
Confidence            7899999999999999999999999999999999999999987777766654432    569999999999999999999


Q ss_pred             cCCeeEEEEeeEEEeC
Q psy2775          93 NREGEAKMDIPVKVNT  108 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~~  108 (785)
                      |..|.....+.|.|..
T Consensus        77 N~~G~~~~~~~l~V~~   92 (98)
T cd05762          77 NKLGSRQAQVNLTVVD   92 (98)
T ss_pred             cCCCceeEEEEEEEec
Confidence            9999999999999974

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.69  E-value=3.2e-16  Score=127.12  Aligned_cols=89  Identities=22%  Similarity=0.410  Sum_probs=80.9

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ||.|+..+++..+.+|++++|.|.+.|+|.|.+.|+|+|..+..+.++.+......++|.|.++.. +|+|.|+|.|+|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~   81 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQM-SDEGNYTVVVENS   81 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCc-ccCEeEEEEEEcC
Confidence            588888899999999999999999999999999999999998877777666666678999999999 9999999999999


Q ss_pred             CcceEEEEEE
Q psy2775         638 LGSATHGARV  647 (785)
Q Consensus       638 ~g~~~~~~~l  647 (785)
                      .|....++.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9998887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.68  E-value=4.8e-16  Score=126.58  Aligned_cols=84  Identities=23%  Similarity=0.305  Sum_probs=71.9

Q ss_pred             eeeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEeeC-----CeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         566 EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ..+.+.+|+.++|.|.++| .|+|.+.|+|||.+|..+....+...+     ..++|.|.++.. +|+|.|+|.|+|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCCc
Confidence            3678999999999999999 899999999999999865544333322     247899999999 999999999999999


Q ss_pred             ceEEEEEEEEE
Q psy2775         640 SATHGARVTVD  650 (785)
Q Consensus       640 ~~~~~~~l~V~  650 (785)
                      ..+.++.|.|+
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            99999999886

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.67  E-value=8.4e-16  Score=121.99  Aligned_cols=82  Identities=23%  Similarity=0.367  Sum_probs=71.8

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      ...+.+|+++.|.|.+.|.|.|.+.|+|++.++... .++.+......+.|.|.++.. +|+|.|+|.|.|..|....++
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAER-EDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCcc-CcCEEEEEEEEeCCCcEEEEE
Confidence            567899999999999999999999999999999754 345555555678899999999 999999999999999998888


Q ss_pred             EEEE
Q psy2775         646 RVTV  649 (785)
Q Consensus       646 ~l~V  649 (785)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            7765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.67  E-value=9.1e-16  Score=124.77  Aligned_cols=90  Identities=36%  Similarity=0.622  Sum_probs=85.2

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.|...+.+..+.+|++++|.|.+.|.|.|.+.|+++|..+..+.++.+...+..++|.|.++.. +|+|.|+|.|.|..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~n~~   79 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTR-EDAGTYTCVASNSS   79 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESG-GGSEEEEEEEEETT
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCCh-hhCEEEEEEEEECC
Confidence            67888889999999999999999999999999999999999998888888888999999999999 99999999999999


Q ss_pred             cceEEEEEEEE
Q psy2775         639 GSATHGARVTV  649 (785)
Q Consensus       639 g~~~~~~~l~V  649 (785)
                      |..+.++.|.|
T Consensus        80 g~~~~~~~l~V   90 (90)
T PF07679_consen   80 GEATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEC
Confidence            99999888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=1.1e-15  Score=123.95  Aligned_cols=83  Identities=29%  Similarity=0.490  Sum_probs=72.7

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      ..+.+.+|++++|.|.+.|.|.|.+.|+|++.++..+.++.+... +...+|.|.++.. +|+|.|+|.|.|..|....+
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGGETVD   87 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCcceEE
Confidence            356899999999999999999999999999999987777666544 4567899999999 99999999999999999888


Q ss_pred             EEEEE
Q psy2775         645 ARVTV  649 (785)
Q Consensus       645 ~~l~V  649 (785)
                      +.|.|
T Consensus        88 ~~v~v   92 (92)
T cd05737          88 VTVSV   92 (92)
T ss_pred             EEEeC
Confidence            87765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.65  E-value=8.1e-16  Score=117.71  Aligned_cols=73  Identities=36%  Similarity=0.518  Sum_probs=62.1

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++|+|.+.|.|.|.|.|+|++..+..+ .++.+..+ ++..+|.|.++.. +|+|.|+|.|.|..|++..++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            579999999999999999999998743 44444443 3445899999999 9999999999999999999999875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.64  E-value=1.7e-15  Score=121.06  Aligned_cols=87  Identities=31%  Similarity=0.461  Sum_probs=76.1

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      ||.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++..  .+      ..|.|.+++.+|+|.|+|.|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~~------~~L~I~~v~~~D~G~Y~C~A   72 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--SG------AVLKIFNIQPEDEGTYECEA   72 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--CC------CEEEECcCChhhCEEEEEEE
Confidence            79999999999999999999999999999999999999987765443322  22      35999999999999999999


Q ss_pred             EcCCeeEEEEeeEEE
Q psy2775          92 KNREGEAKMDIPVKV  106 (785)
Q Consensus        92 ~~~~~~~~~~~~v~v  106 (785)
                      .|..|.....+.|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd05851          73 ENIKGKDKHQARVYV   87 (88)
T ss_pred             EcCCCceEEEEEEEE
Confidence            999999988888776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=2.6e-15  Score=121.18  Aligned_cols=87  Identities=21%  Similarity=0.271  Sum_probs=72.5

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      +.++.+..+.+|+.++|.|.+.|+|.|.+.|+++|..+...............+|.|.++.. +|.|.|+|.|.|..|..
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~~   82 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITS-ETQTTVTCTAENPVGQA   82 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCc-ccCEEEEEEEECCCCce
Confidence            33445667999999999999999999999999999988655433333344567899999999 99999999999999999


Q ss_pred             EEEEEEEE
Q psy2775         642 THGARVTV  649 (785)
Q Consensus       642 ~~~~~l~V  649 (785)
                      ..++.|.|
T Consensus        83 ~~~~~L~v   90 (90)
T cd04972          83 NVSVQVTV   90 (90)
T ss_pred             eEEEEEeC
Confidence            99888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.63  E-value=1.4e-15  Score=116.05  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=63.9

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+++.|.|.+.|.|.|+|+|+|++..+..+.++.+..   ..+|.|.++.. +|+|.|+|.|.|..|++..++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITK-LDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCCh-hHCEEEEEEEECCCCceeEEEEEEC
Confidence            6899999999999999999999999887766654433   23699999999 9999999999999999999998875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.63  E-value=1.8e-15  Score=116.02  Aligned_cols=73  Identities=34%  Similarity=0.488  Sum_probs=61.0

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCC-eeEEeeC-CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDG-ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~-~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+|+|.+.|.|.|.|.|+|++.++..+.. +.+...+ +..+|.|.++.. +|+|.|+|.|.|..|+...++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            57999999999999999999999875433 3332232 334799999999 9999999999999999999998875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.62  E-value=2.9e-15  Score=122.37  Aligned_cols=83  Identities=20%  Similarity=0.308  Sum_probs=70.6

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee------CCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD------GENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~------~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ...+..|+.++|.|.+.|+|+|.+.|+|||.+|..+.+......      ...++|.|.++.. +|+|.|+|.|.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCce
Confidence            56788999999999999999999999999999976554322211      1246899999999 9999999999999999


Q ss_pred             eEEEEEEEEE
Q psy2775         641 ATHGARVTVD  650 (785)
Q Consensus       641 ~~~~~~l~V~  650 (785)
                      ...++.|.|+
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999999886

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.62  E-value=1.7e-15  Score=117.12  Aligned_cols=74  Identities=24%  Similarity=0.415  Sum_probs=64.0

Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      +|+++.|.|.+.|+|.|.|+|+|++..+..+.+..+.   ...+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVAL-HDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCH-HhCEEEEEEEEeCCCceeEEEEEeC
Confidence            5899999999999999999999999998765444332   234799999999 9999999999999999999888865

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.62  E-value=4.7e-15  Score=114.91  Aligned_cols=74  Identities=26%  Similarity=0.488  Sum_probs=66.4

Q ss_pred             eEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       575 ~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++.|.|.+.|.|.|.+.|+|+|..+..+.+..+...+...+|.|.++.. +|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAER-SDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCc-CcCEEEEEEEECCCccEEEEEEEEC
Confidence            4789999999999999999999999777777666667788999999999 9999999999999999988888765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.61  E-value=8.3e-15  Score=118.37  Aligned_cols=85  Identities=22%  Similarity=0.327  Sum_probs=68.5

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCC-CceEEEe-CCEEecCCC-CeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEcCC-
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPA-PSIVWFR-NNKPLLSSP-KKREIF-DGENIILELKEADSETDAGDYKVVATNEL-  638 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~-~~~~i~~~~-~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~-  638 (785)
                      .+....+.+|++++|.|.+.|.|. |.|+|++ ++..+.... ++.+.. ++..++|+|.++.. +|+|.|+|.|+|.. 
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~~   84 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNEDE   84 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCCC
Confidence            345668999999999999999995 6999998 787776533 333333 23457899999999 99999999999997 


Q ss_pred             cceEEEEEEEE
Q psy2775         639 GSATHGARVTV  649 (785)
Q Consensus       639 g~~~~~~~l~V  649 (785)
                      |.+++++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            88888888776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.60  E-value=3e-15  Score=110.94  Aligned_cols=66  Identities=23%  Similarity=0.433  Sum_probs=57.8

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      ++|.|.+.|+|.|.++|||||.++...        .....|.|.++.. +|+|.|+|.|+|..|..+.+.++.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTE-ASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCH-HHCEEEEEEEEECCccEEEEEEEEEE
Confidence            579999999999999999999998532        2345799999999 99999999999999988888887774

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.60  E-value=8.1e-15  Score=120.40  Aligned_cols=90  Identities=21%  Similarity=0.408  Sum_probs=72.0

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe--CCEEecC-----CCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLLS-----SPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~--~~~~i~~-----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      +|.+.. +.+..+.+|++++|.|.+.|.|.|.|+|+|  ++..+..     +.++.+.......+|+|.+++. +|+|.|
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~-~D~G~Y   79 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKL-SDSGRY   79 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCc-CCCEEE
Confidence            366654 678999999999999999999999999999  4444432     1233333334567899999999 999999


Q ss_pred             EEEEEcCCcceEEEEEEEE
Q psy2775         631 KVVATNELGSATHGARVTV  649 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~V  649 (785)
                      +|.|.|..|....++.|.|
T Consensus        80 ~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          80 DCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEeccCCcceeEEEEeC
Confidence            9999999999988887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.60  E-value=7.7e-15  Score=114.65  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=69.0

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      |++++|.|.+.|.|.|.|+|++++..+....++.+...++...|+|.++.. +|+|.|+|.|.|..|....++.+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~~~~~   77 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKE-SDQGAYTCEAINTRGMVFGIPDGILT   77 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCCh-HHCEEEEEEEEecCCEEEecccEEEE
Confidence            789999999999999999999999988777676666667778999999999 99999999999999999888887764

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.60  E-value=1.9e-14  Score=116.76  Aligned_cols=90  Identities=21%  Similarity=0.422  Sum_probs=78.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .||+|...|+.+.+.+|+++.|.|.+.|.|.+.+.|++++..+....++.+.....    .++|.|.+++.+|+|.|+|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~   77 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEY----KSTFEISKVQMSDEGNYTVV   77 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCC----eeEEEECCCCcccCEeEEEE
Confidence            58999999999999999999999999999999999999999887777766554332    25699999999999999999


Q ss_pred             EEcCCeeEEEEeeE
Q psy2775          91 AKNREGEAKMDIPV  104 (785)
Q Consensus        91 a~~~~~~~~~~~~v  104 (785)
                      |.|..|.....+.|
T Consensus        78 a~N~~G~~~~~~~l   91 (92)
T cd05747          78 VENSEGKQEAQFTL   91 (92)
T ss_pred             EEcCCCCEeEEEEe
Confidence            99999988776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.60  E-value=6.8e-15  Score=118.40  Aligned_cols=88  Identities=20%  Similarity=0.320  Sum_probs=74.2

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ||.+...+.+..+.+|+.++|.|.+.|+|.|.++|+|++..+.......    .....|.|.+++. +|+|.|+|.|.|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~-~D~G~Y~C~a~N~   75 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQF-EDEGTYECEAENI   75 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCc-ccCEEEEEEEEEC
Confidence            3566777788899999999999999999999999999887765443221    2345799999999 9999999999999


Q ss_pred             CcceEEEEEEEEE
Q psy2775         638 LGSATHGARVTVD  650 (785)
Q Consensus       638 ~g~~~~~~~l~V~  650 (785)
                      .|....++.|.|+
T Consensus        76 ~G~~~~~~~l~V~   88 (88)
T cd04968          76 KGKDTHQGRIYVQ   88 (88)
T ss_pred             CCcEEEEEEEEEC
Confidence            9999999988873

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.59  E-value=5.3e-15  Score=117.68  Aligned_cols=84  Identities=23%  Similarity=0.438  Sum_probs=71.6

Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      |+..+.+..+.+|++++|.|.+.|.|.|.+.|+|+|..+..+.+...  .+  ..|.|.++.. +|+|.|+|.|.|..|.
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~--~~L~i~~~~~-~D~G~Y~C~a~N~~G~   76 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EA--GDLRITKLSL-SDSGMYQCVAENKHGT   76 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eC--CEEEEeeCCH-HHCEEEEEEEECCCCe
Confidence            44556788999999999999999999999999999999876554332  22  3699999999 9999999999999999


Q ss_pred             eEEEEEEEE
Q psy2775         641 ATHGARVTV  649 (785)
Q Consensus       641 ~~~~~~l~V  649 (785)
                      ...++.|.|
T Consensus        77 ~~~~~~l~V   85 (85)
T cd05728          77 IYASAELAV   85 (85)
T ss_pred             EEEEEEEEC
Confidence            998888765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.59  E-value=1.9e-14  Score=114.92  Aligned_cols=86  Identities=19%  Similarity=0.268  Sum_probs=70.9

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCCceEEEe-CCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ...+.+..+.+|+++.|.|.+.|.|. .++|++ ++..+..+.++.+...+...+|+|.++.. +|+|.|+|.|+|..|.
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANI-EDAGIYRCQATDAKGQ   81 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCCh-HHCEEEEEEEEcCCCc
Confidence            34556788999999999999999998 899998 57777766666665566677999999999 9999999999999998


Q ss_pred             e-EEEEEEEE
Q psy2775         641 A-THGARVTV  649 (785)
Q Consensus       641 ~-~~~~~l~V  649 (785)
                      . .+++.|.|
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            6 44555544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.59  E-value=1.2e-14  Score=119.02  Aligned_cols=83  Identities=19%  Similarity=0.397  Sum_probs=70.4

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      .+..+..|++++|.|.+.|+|.|.|.|+|+|..+...... .........|+|.++.. +|+|.|+|.|.|..|....++
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~   88 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEK-YSFNEDGSEMTILDVDK-LDEAEYTCIAENKAGEQEAEI   88 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCE-EEEeCCCCEEEECCCCh-hhCEEEEEEEEcCCCeEEEEE
Confidence            3557899999999999999999999999999998765222 23333445799999999 999999999999999999999


Q ss_pred             EEEEE
Q psy2775         646 RVTVD  650 (785)
Q Consensus       646 ~l~V~  650 (785)
                      .|.|.
T Consensus        89 ~L~V~   93 (95)
T cd05730          89 HLKVF   93 (95)
T ss_pred             EEEEE
Confidence            98886

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.59  E-value=1.1e-14  Score=112.28  Aligned_cols=73  Identities=37%  Similarity=0.523  Sum_probs=61.5

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++|+|.+.|.|.|.|.|+|++..+..+ .++.+... .+..+|.|.++.. +|+|.|+|.|.|..|++..++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999999999999999999998754 34444333 3445799999999 9999999999999999999988865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.59  E-value=1.6e-14  Score=118.31  Aligned_cols=90  Identities=23%  Similarity=0.324  Sum_probs=71.4

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC-----CeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-----KKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~-----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      |.|........+..|+.++|.|.+.|.|.|.|+|++++..+....     +..+......+.|.|.++.. +|+|.|+|.
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~   81 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQY-TDAGEYLCT   81 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCcc-CcCEEEEEE
Confidence            666655555556668999999999999999999999988775332     22222234457899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTV  649 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V  649 (785)
                      |.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999999888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.59  E-value=2.6e-14  Score=116.12  Aligned_cols=90  Identities=37%  Similarity=0.644  Sum_probs=82.3

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |+|...+..+.+.+|+++.|.|.+.|.|.+.+.|++++..+..+.++.+...+.    .++|+|.+++.+|+|.|+|.|.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~~~   76 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGG----SSSLTIKNVTREDAGTYTCVAS   76 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETT----EEEEEESSESGGGSEEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccc----eeEEccCCCChhhCEEEEEEEE
Confidence            789999999999999999999999999999999999999999988888777663    3679999999999999999999


Q ss_pred             cCCeeEEEEeeEEE
Q psy2775          93 NREGEAKMDIPVKV  106 (785)
Q Consensus        93 ~~~~~~~~~~~v~v  106 (785)
                      |..|.....+.|.|
T Consensus        77 n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   77 NSSGEATASVNLTV   90 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEC
Confidence            99999988888765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.58  E-value=1.1e-14  Score=112.70  Aligned_cols=74  Identities=26%  Similarity=0.426  Sum_probs=62.2

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCe-eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+.++|.|.+.|+|.|+|+|+|+|.++...... ....++  ..|.|.+++. +|+|.|+|.|.|..|...+++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQE-RSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCH-hhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            688999999999999999999999998644322 122222  3689999999 9999999999999999999999887

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.58  E-value=2.4e-14  Score=114.33  Aligned_cols=77  Identities=13%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCC-CeeEEe--eC--CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-KKREIF--DG--ENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~-~~~~~~--~~--~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      |+.++|.|.+.|.|+|.++|+|++..+..+. ++.+..  .+  ..++|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCcceEEEEE
Confidence            7899999999999999999999999886543 443332  12  236799999999 99999999999999999998888


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|+
T Consensus        80 ~V~   82 (88)
T cd05735          80 TVQ   82 (88)
T ss_pred             EEe
Confidence            887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.58  E-value=1.6e-14  Score=110.42  Aligned_cols=71  Identities=20%  Similarity=0.429  Sum_probs=60.4

Q ss_pred             eEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       575 ~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      +++|.|.+.|.|.|.++|+|+|..+..+.++.+..++   .|.|.++.. +|+|.|+|.|.|..|+...++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVK-SDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCc-ccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999998766655444332   377889998 9999999999999999999888865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.57  E-value=3.7e-14  Score=115.55  Aligned_cols=89  Identities=22%  Similarity=0.453  Sum_probs=73.5

Q ss_pred             CCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          19 TKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      ...+.+.+|++++|.|.+.| .|+|.+.|+|+|.+|.......+...+ ....+.++|+|..++.+|+|.|+|.|.|..|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            35799999999999999999 899999999999999765544333222 1223457899999999999999999999999


Q ss_pred             eEEEEeeEEEe
Q psy2775          97 EAKMDIPVKVN  107 (785)
Q Consensus        97 ~~~~~~~v~v~  107 (785)
                      .....+.|.|.
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            99888888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=2.4e-14  Score=111.30  Aligned_cols=74  Identities=28%  Similarity=0.414  Sum_probs=62.5

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCe-eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |++++|.|.+.|.|.|+|+|+|+|..+...... ....  ....|.|.+++. +|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQP-SDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCCh-hhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999988654322 2222  234699999999 9999999999999999999888877

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.56  E-value=2.7e-14  Score=114.37  Aligned_cols=81  Identities=22%  Similarity=0.429  Sum_probs=68.5

Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee-EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      +.+.+|+.++|.|.+.|+|.|.++|+|+|..+..+.+.. ........+|.|.++.. +|+|.|+|.|.|..|+...+++
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCc-ccCEEEEEEEEeCCCEEEEEEE
Confidence            468899999999999999999999999999987655432 12234456799999999 9999999999999999999888


Q ss_pred             EEE
Q psy2775         647 VTV  649 (785)
Q Consensus       647 l~V  649 (785)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.56  E-value=2.5e-14  Score=117.67  Aligned_cols=89  Identities=26%  Similarity=0.385  Sum_probs=72.3

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC-----CeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-----KKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~-----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      |.|. .+.+..+.+|++++|.|.+.|+|.|.+.|++++..+....     ++.+......++|+|.+++. +|+|.|+|.
T Consensus         3 P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~   80 (96)
T cd05732           3 PKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL-TDAGRYDCE   80 (96)
T ss_pred             ccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCc-CcCEEeEEE
Confidence            6664 4567899999999999999999999999999987665432     22222334567899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTV  649 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V  649 (785)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999988777764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.55  E-value=4.4e-14  Score=114.00  Aligned_cols=83  Identities=28%  Similarity=0.500  Sum_probs=70.5

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|||++..+..+.++..... +..++|.|.++.. +|+|.|+|.|.|..|....+
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCceeeE
Confidence            356899999999999999999999999999999877666544433 3346899999999 99999999999999998887


Q ss_pred             EEEEE
Q psy2775         645 ARVTV  649 (785)
Q Consensus       645 ~~l~V  649 (785)
                      ..|.|
T Consensus        88 ~~v~~   92 (92)
T cd05891          88 VTVSV   92 (92)
T ss_pred             EEEEC
Confidence            77764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.55  E-value=3.8e-14  Score=110.22  Aligned_cols=75  Identities=25%  Similarity=0.492  Sum_probs=61.1

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEee
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE  652 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  652 (785)
                      ++|.|.+.|.|.|.|+|+|+|.++..+.....+. ....+|.|.++.. +|+|.|+|.|.|.+|....+..+.|.+.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS-SKERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe-CCCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5899999999999999999999986654332222 3345799999999 9999999999999999877777777653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.55  E-value=5.4e-14  Score=117.14  Aligned_cols=91  Identities=27%  Similarity=0.511  Sum_probs=70.2

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC----CCeeEEe-eCCeEEEEEc--cCCCCCCceeE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS----PKKREIF-DGENIILELK--EADSETDAGDY  630 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~----~~~~~~~-~~~~~~L~i~--~~~~~~d~G~Y  630 (785)
                      +|.|...+.+..+.+|++++|.|.+.|+|.|.|+|+|+|..+...    ....... ++....+.+.  .+.. +|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGR-SDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCc-CcCEEE
Confidence            488888889999999999999999999999999999999988652    2222222 3333334443  3356 999999


Q ss_pred             EEEEEcCCcc-eEEEEEEEE
Q psy2775         631 KVVATNELGS-ATHGARVTV  649 (785)
Q Consensus       631 ~C~a~n~~g~-~~~~~~l~V  649 (785)
                      +|.|.|..|. ....+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999999 556676665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.54  E-value=4e-14  Score=108.43  Aligned_cols=71  Identities=24%  Similarity=0.343  Sum_probs=57.9

Q ss_pred             EEEEEEecCCCCceEEEeCCEEecCCCCeeE--Ee---eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775         577 RLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--IF---DGENIILELKEADSETDAGDYKVVATNELGSATHGARVT  648 (785)
Q Consensus       577 ~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~--~~---~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  648 (785)
                      -|.|.+.|+|.|+|+|||||++|..+.+...  ..   ....++|.|.++.. +|+|.|+|.|+|..|++..++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCcccceEEEee
Confidence            3789999999999999999999976654322  11   12356899999999 999999999999999888776653

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.54  E-value=3.6e-14  Score=110.87  Aligned_cols=75  Identities=27%  Similarity=0.297  Sum_probs=63.9

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+.++|.|.+.|+|.|.|.|+++|..+...... .........|.|.+++. +|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQP-NDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCCh-hhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999999999999999999988765433 12233445799999999 9999999999999999999888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.54  E-value=8.9e-14  Score=112.68  Aligned_cols=87  Identities=24%  Similarity=0.417  Sum_probs=73.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      .-|+.+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+....+.   .++|+|.+++.+|+|.|+|.|.|..|
T Consensus         6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGK---YASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCC---EEEEEEccCChhhCEEEEEEEEECCC
Confidence            346678999999999999999999999999999999987777666544221   14699999999999999999999999


Q ss_pred             eEEEEeeEEE
Q psy2775          97 EAKMDIPVKV  106 (785)
Q Consensus        97 ~~~~~~~v~v  106 (785)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~v   92 (92)
T cd05737          83 GETVDVTVSV   92 (92)
T ss_pred             cceEEEEEeC
Confidence            9888877654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.54  E-value=3.8e-14  Score=109.27  Aligned_cols=73  Identities=27%  Similarity=0.418  Sum_probs=63.8

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+.+.|.|.+.|.|.|.++|+|++..+..+.+.....   ..+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTK-SDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCCh-hHCEEEEEEEECCCCceEEEEEEEC
Confidence            6889999999999999999999999987766654332   23699999999 9999999999999999999888875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.54  E-value=8.2e-14  Score=112.85  Aligned_cols=82  Identities=22%  Similarity=0.443  Sum_probs=65.7

Q ss_pred             CeEeeeeeeeeee---ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCC-CCCCceeEEEEE
Q psy2775         559 PLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD-SETDAGDYKVVA  634 (785)
Q Consensus       559 p~~~~~~~~~~v~---~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~-~~~d~G~Y~C~a  634 (785)
                      |.|+..+.++.+.   +|++++|.|.+.|.|.|.|+|+|+|..+...........+  ..|.|.++. . +|+|.|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~-~D~G~Y~C~A   78 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEV-KDSGRYQCLA   78 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCcc-CcCEEEEEEE
Confidence            7788887777654   4789999999999999999999999998654443333333  358888874 5 8999999999


Q ss_pred             EcCCcceEE
Q psy2775         635 TNELGSATH  643 (785)
Q Consensus       635 ~n~~g~~~~  643 (785)
                      .|.+|+..+
T Consensus        79 ~N~~G~~~S   87 (94)
T cd05848          79 TNSIGSILS   87 (94)
T ss_pred             EcCCCeEEe
Confidence            999998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.54  E-value=2.4e-14  Score=107.72  Aligned_cols=69  Identities=22%  Similarity=0.426  Sum_probs=58.3

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      ++|.|.+.|+|.|.++|+|||.++....+  . .  ....|.|.++.. +|+|.|+|.|.|..|..+.+.++.|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~-~--~~~~L~I~~v~~-~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--F-K--RGVHLTIYEVTE-KDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE--E-c--cCCEEEECcCCH-HHCEEEEEEEEECCCceeeEEEEEEE
Confidence            47999999999999999999999965432  1 1  234699999999 99999999999999988888777764

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.53  E-value=1.2e-13  Score=112.07  Aligned_cols=83  Identities=24%  Similarity=0.380  Sum_probs=65.4

Q ss_pred             CeEeeeeeeeeeeec---CeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         559 PLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       559 p~~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      |.|...+++..+.+|   ++++|.|.+.|+|.|+|+|+++|..+...........+  ..|.|.++...+|+|.|+|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEEE
Confidence            778888888877666   58999999999999999999999998644332222222  3588877553289999999999


Q ss_pred             cCCcceEE
Q psy2775         636 NELGSATH  643 (785)
Q Consensus       636 n~~g~~~~  643 (785)
                      |..|+..+
T Consensus        80 N~~G~~~s   87 (94)
T cd05850          80 NRCGTVVS   87 (94)
T ss_pred             cCcCcEEE
Confidence            99998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=6.7e-14  Score=109.12  Aligned_cols=71  Identities=23%  Similarity=0.426  Sum_probs=58.4

Q ss_pred             EEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-------CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775         577 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEADSETDAGDYKVVATNELGSATHGARVT  648 (785)
Q Consensus       577 ~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-------~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  648 (785)
                      .|.|.+.|+|.|+|+|+|||+++..+........       ...+.|+|.++.. +|+|.|+|.|+|.+|.+.+++.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCCeeeEEEee
Confidence            4789999999999999999999987654332221       2356799999999 999999999999999988876653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.53  E-value=1.6e-13  Score=108.95  Aligned_cols=83  Identities=27%  Similarity=0.477  Sum_probs=70.5

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA   98 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~   98 (785)
                      +.+.+.+|+++.|.|.+.|.|.|.+.|++++.++... .++.+....+    .+.|.|.+++.+|+|.|+|.|.|..|.+
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD----LSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC----eEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            4688999999999999999999999999999998764 3555544332    3569999999999999999999999998


Q ss_pred             EEEeeEEE
Q psy2775          99 KMDIPVKV  106 (785)
Q Consensus        99 ~~~~~v~v  106 (785)
                      ...+.|.|
T Consensus        79 ~~~~~l~V   86 (86)
T cd05894          79 HASLFVKV   86 (86)
T ss_pred             EEEEEEEC
Confidence            88877764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.52  E-value=8.9e-14  Score=110.63  Aligned_cols=84  Identities=23%  Similarity=0.410  Sum_probs=73.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      |...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++....        ..|+|.+++.+|+|.|+|.|.|.
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA--------GDLRITKLSLSDSGMYQCVAENK   73 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC--------CEEEEeeCCHHHCEEEEEEEECC
Confidence            6778999999999999999999999999999999999987766554422        24999999999999999999999


Q ss_pred             CeeEEEEeeEEE
Q psy2775          95 EGEAKMDIPVKV  106 (785)
Q Consensus        95 ~~~~~~~~~v~v  106 (785)
                      .|....++.|.|
T Consensus        74 ~G~~~~~~~l~V   85 (85)
T cd05728          74 HGTIYASAELAV   85 (85)
T ss_pred             CCeEEEEEEEEC
Confidence            999888777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.52  E-value=5e-14  Score=107.33  Aligned_cols=70  Identities=33%  Similarity=0.517  Sum_probs=59.8

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      ++|.|.+.|+|.|.+.|+|+|.++..+.++  .  ....+|.|.++.. +|+|.|+|.|.|..|..+.+.++.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~--~--~~~~~L~I~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT--K--KSGHSLTIKDVTE-EDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--E--cCCCEEEECcCCH-HHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            479999999999999999999999766322  1  2345799999999 99999999999999998888888774

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.52  E-value=2.4e-13  Score=108.54  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK  105 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~  105 (785)
                      |+.++|.|.+.|.|++.+.|++++..+... .++.+..........++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            899999999999999999999999888543 3555443322233457899999999999999999999999999999999


Q ss_pred             EeC
Q psy2775         106 VNT  108 (785)
Q Consensus       106 v~~  108 (785)
                      |..
T Consensus        81 V~~   83 (88)
T cd05735          81 VQE   83 (88)
T ss_pred             EeC
Confidence            874

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.52  E-value=8e-14  Score=105.17  Aligned_cols=68  Identities=24%  Similarity=0.436  Sum_probs=56.4

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      |+.++|.|.+.|.|.|.|+|+|++.++....+.    ..+...|+|.++   .|+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~----~~~~~~L~i~~~---~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEM----PVGRNVLELTNI---YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccce----ecCccEEEEecc---ccCeeEEEEEEeCCCEEEEEEEE
Confidence            688999999999999999999999988654432    123346999986   57999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.52  E-value=1.4e-13  Score=110.86  Aligned_cols=82  Identities=23%  Similarity=0.378  Sum_probs=64.5

Q ss_pred             CeEeeeeeeeeeeecC---eEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         559 PLFIERFEEKTVKEKG---TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~---~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      |.|...+.+..+.++.   ++.|.|.+.|+|.|+|+|+|++..+....... ...+  ..|.|.++...+|+|.|+|.|+
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~-~~~~--g~L~I~~~~~~~D~G~Y~C~A~   78 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY-SMVG--GNLVINNPDKYKDAGRYVCIVS   78 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE-EEEC--CEEEECcCCcCCCCEEEEEEEE
Confidence            7888888777666554   89999999999999999999999885433322 2223  4689988752289999999999


Q ss_pred             cCCcceEE
Q psy2775         636 NELGSATH  643 (785)
Q Consensus       636 n~~g~~~~  643 (785)
                      |..|...+
T Consensus        79 N~~G~~~s   86 (93)
T cd05849          79 NIYGKVRS   86 (93)
T ss_pred             eCcceEEE
Confidence            99998755

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=5.2e-14  Score=107.53  Aligned_cols=70  Identities=31%  Similarity=0.445  Sum_probs=58.9

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      +.|.|.+.|+|.|.|.|+|++..+..+. ..  ......+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~--~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TK--KLNNNKTLQLDNVLE-SDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-ee--EEcCCCEEEEcccCH-HhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999999999998775432 21  223456799999999 9999999999999999998888877

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.51  E-value=1.7e-13  Score=108.43  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=63.0

Q ss_pred             CeEEEEEEEecCCCC--ceEEEeCCEEecCCC---CeeEE-eeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         574 GTIRLMAKVKASPAP--SIVWFRNNKPLLSSP---KKREI-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       574 ~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~---~~~~~-~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      +.++|.|.+.|.|.|  .|+|+|||..+....   ++.+. .....++|+|.+++. +|+|.|+|.|.|..|...+++.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g~~~~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVDSASASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCCCEEEEEEE
Confidence            468999999999988  589999999886432   22222 223456899999999 99999999999999999999999


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd05854          80 VVR   82 (85)
T ss_pred             EEE
Confidence            997

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.51  E-value=1.8e-13  Score=110.11  Aligned_cols=87  Identities=24%  Similarity=0.364  Sum_probs=73.9

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      ||.|...|....+.+|++++|.|.+.|.|.+.+.|++++..+.......  ..      ...|.|.+++.+|+|.|+|.|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~------~~~L~i~~v~~~D~G~Y~C~a   72 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MS------GAVLKIPNIQFEDEGTYECEA   72 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--Ee------CCEEEECCCCcccCEEEEEEE
Confidence            6788889999999999999999999999999999999887665443322  11      135999999999999999999


Q ss_pred             EcCCeeEEEEeeEEE
Q psy2775          92 KNREGEAKMDIPVKV  106 (785)
Q Consensus        92 ~~~~~~~~~~~~v~v  106 (785)
                      .|..|.......|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd04968          73 ENIKGKDTHQGRIYV   87 (88)
T ss_pred             EECCCcEEEEEEEEE
Confidence            999999888887766

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.51  E-value=1.8e-13  Score=112.00  Aligned_cols=90  Identities=32%  Similarity=0.564  Sum_probs=74.4

Q ss_pred             CCeeeecC--CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          12 PPTFSKKT--KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        12 ~p~~~~~~--~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ||.|...+  .+..+.+|+++.|.|.+.|.|.+.+.|++++..+... .++.+...+      +.|+|.+++.+|+|.|+
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~   74 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDG------SEMTILDVDKLDEAEYT   74 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCC------CEEEECCCChhhCEEEE
Confidence            67777654  4568899999999999999999999999999988665 333332221      45999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.....+.|.|.
T Consensus        75 C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          75 CIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             EEEEcCCCeEEEEEEEEEE
Confidence            9999999999888888875

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.50  E-value=2.8e-13  Score=109.52  Aligned_cols=88  Identities=22%  Similarity=0.390  Sum_probs=69.6

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC-CeeEEEE-CCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYY-NGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      ...|....+.+|++++|.|.+.|.|. |.++|++ ++..+.. ..++.+...++   ..++|+|.+++.+|+|.|+|.|.
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~---~~~~L~I~~v~~~D~G~YtC~A~   80 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDD---YSSTLTIYNANIDDAGIYKCVVS   80 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCC---CceEEEEeccChhhCEEEEEEEE
Confidence            45677889999999999999999985 7999998 6766655 33444333222   23679999999999999999999


Q ss_pred             cCC-eeEEEEeeEEE
Q psy2775          93 NRE-GEAKMDIPVKV  106 (785)
Q Consensus        93 ~~~-~~~~~~~~v~v  106 (785)
                      |.. |....++.|.|
T Consensus        81 N~~~g~~~~s~~l~v   95 (96)
T cd05865          81 NEDEGESEATVNVKI   95 (96)
T ss_pred             cCCCCcEEEEEEEEE
Confidence            996 78888877766

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.50  E-value=1.4e-13  Score=110.27  Aligned_cols=79  Identities=20%  Similarity=0.371  Sum_probs=64.9

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE-E
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH-G  644 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~-~  644 (785)
                      .++.+.+|++++|.|.+.|. .|.|.|+|++..+..+ +  +.......+|+|.+++. +|+|.|+|.|.|..|...+ .
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~--~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~S~~   85 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-R--LQLSNDNRTLTFNNVTR-SDTGHYQCEASNEVSNMTSDP   85 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-C--EEEeCCCCEEEECcCCh-hhCEEEEEEEEcCCCCEEeee
Confidence            36789999999999999999 9999999999988643 3  22333445799999999 9999999999999998655 4


Q ss_pred             EEEEE
Q psy2775         645 ARVTV  649 (785)
Q Consensus       645 ~~l~V  649 (785)
                      +.|.|
T Consensus        86 ~~L~V   90 (91)
T cd05740          86 YILNV   90 (91)
T ss_pred             EEEEe
Confidence            55655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.50  E-value=3.7e-13  Score=108.60  Aligned_cols=88  Identities=17%  Similarity=0.236  Sum_probs=71.8

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      +..+|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+............    ..++|+|.+++.+|.|.|+|.|.|.
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTV----DIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecC----CEEEEEEecCCcccCEEEEEEEECC
Confidence            456777888999999999999999999999999999987655443222211    1256999999999999999999999


Q ss_pred             CeeEEEEeeEEE
Q psy2775          95 EGEAKMDIPVKV  106 (785)
Q Consensus        95 ~~~~~~~~~v~v  106 (785)
                      .|.....+.|.|
T Consensus        79 ~G~~~~~~~L~v   90 (90)
T cd04972          79 VGQANVSVQVTV   90 (90)
T ss_pred             CCceeEEEEEeC
Confidence            999888877653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.50  E-value=1.3e-13  Score=105.29  Aligned_cols=73  Identities=29%  Similarity=0.442  Sum_probs=63.7

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+++.|.|.+.|.|.|.|.|+|++..+..+.++.+...       .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~-------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD-------GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC-------CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            78999999999999999999999998877777665432       24999999999999999999999999988887764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.50  E-value=7.7e-14  Score=105.99  Aligned_cols=68  Identities=22%  Similarity=0.406  Sum_probs=58.2

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      |+|.|.+.|.|.|.|+|+|+|..+..+.++.+..   ..+|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGV-ADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCCh-hhCEEEEEEEECCCCcEEEEEEe
Confidence            5799999999999999999999987665543322   34799999999 99999999999999999887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.50  E-value=3.5e-13  Score=110.13  Aligned_cols=87  Identities=20%  Similarity=0.378  Sum_probs=72.3

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCC--ccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD--MHSYVSIVTIKSIKKREEGVYTVVAKNREGEA   98 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~   98 (785)
                      ...+..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+.+........  ...+.++|+|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            6888999999999999999999999999999998765543322211  12344789999999999999999999999999


Q ss_pred             EEEeeEEEe
Q psy2775          99 KMDIPVKVN  107 (785)
Q Consensus        99 ~~~~~v~v~  107 (785)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.49  E-value=2.9e-13  Score=103.62  Aligned_cols=74  Identities=32%  Similarity=0.526  Sum_probs=61.2

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |.|.|.+.|.|.|.|.|+|++..+.. +.++.+..++..   ..+|+|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g---~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSG---RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCC---cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            57999999999999999999999874 355555443321   146999999999999999999999999988887764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.49  E-value=2.9e-13  Score=111.20  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=70.1

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEccC-----CCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPLQE-----TDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      +|+|.. +.++.+.+|++++|.|.+.|.|.|.|.|+++  +..+..     ..++.+....    ..++|+|.+++.+|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~----~~~~L~I~~v~~~D~   76 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH----GESSLHIKDVKLSDS   76 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC----CeeEEEEeeCCcCCC
Confidence            688865 7789999999999999999999999999994  333322     1233332221    124699999999999


Q ss_pred             eEEEEEEEcCCeeEEEEeeEEE
Q psy2775          85 GVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |.|+|.|.|..|....++.|.|
T Consensus        77 G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          77 GRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEEEeccCCcceeEEEEeC
Confidence            9999999999998887766653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.49  E-value=1.6e-13  Score=106.04  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=63.0

Q ss_pred             CCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775          26 ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK  105 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~  105 (785)
                      +|+++.|.|.+.|.|.|.|.|++++..+....+..+...       .+|+|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS-------GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC-------CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            699999999999999999999999998876555443222       3599999999999999999999999988887775


Q ss_pred             E
Q psy2775         106 V  106 (785)
Q Consensus       106 v  106 (785)
                      |
T Consensus        74 V   74 (74)
T cd05745          74 V   74 (74)
T ss_pred             C
Confidence            4

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.48  E-value=6e-13  Score=107.42  Aligned_cols=87  Identities=21%  Similarity=0.438  Sum_probs=72.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      ..|..+.+.+|+++.|.|.+.|.|.+.+.|++++..+....++......+.   .++|.|.+++.+|+|.|+|.|.|..|
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGK---YASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCChhhCEEEEEEEEeCCC
Confidence            356789999999999999999999999999999998877666555433321   14699999999999999999999999


Q ss_pred             eEEEEeeEEE
Q psy2775          97 EAKMDIPVKV  106 (785)
Q Consensus        97 ~~~~~~~v~v  106 (785)
                      .+..++.|.|
T Consensus        83 ~~~~~~~v~~   92 (92)
T cd05891          83 GETVDVTVSV   92 (92)
T ss_pred             ceeeEEEEEC
Confidence            9988877754

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.48  E-value=1.5e-13  Score=106.81  Aligned_cols=73  Identities=19%  Similarity=0.357  Sum_probs=59.8

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ...++++.+.+|+++.|.|.+.|+|.| +|.|+|||.++...      .....+.|.|..+   .|.|.|.|.|.|.+|.
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGL---NETSKFSCEAHNAKGV   72 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEccc---cCCeEEEEEEEeccCc
Confidence            345568899999999999999999999 79999999988541      1123357999876   5789999999999997


Q ss_pred             eEE
Q psy2775         641 ATH  643 (785)
Q Consensus       641 ~~~  643 (785)
                      ..+
T Consensus        73 ~~s   75 (81)
T cd05749          73 TTS   75 (81)
T ss_pred             EEe
Confidence            665

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.48  E-value=2.5e-13  Score=105.80  Aligned_cols=74  Identities=20%  Similarity=0.369  Sum_probs=63.3

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +.|.|.+.|.|.|.+.|+|++..+..+.+..+...+....|.|.++.. +|+|.|+|.|.|..|.++.++.|.|+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRY-EDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCc-ccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            479999999999999999999998765444344444556799999999 99999999999999999999999886

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=1.7e-13  Score=106.39  Aligned_cols=73  Identities=25%  Similarity=0.401  Sum_probs=57.1

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++|.|.+.|.|.|.|+|+|+|...... ...++........|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKI-EDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCc-ccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            479999999999999999998643222 111122222334799999999 9999999999999999999888887

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.47  E-value=4.4e-13  Score=110.10  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCC--CCeeEEee----CCeEEEEEccCCCCCCceeE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSETDAGDY  630 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~--~~~~~~~~----~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      ||.+. ......+.+|++++|.|.+.|.|.| .|.|++++..+...  .++.+...    +..++|+|.++..++|.|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            35554 3456778999999999999999999 69999999988654  34444432    23468999999983448999


Q ss_pred             EEEEEcCCcceEEEEEE
Q psy2775         631 KVVATNELGSATHGARV  647 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l  647 (785)
                      +|.|.|..|.+..++.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.47  E-value=5.4e-13  Score=111.28  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=63.4

Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEe--e--CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIF--D--GENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~--~--~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      .|.+++|.|.+.|.|.|.+.|+|||..+... .++.+..  .  ...++|+|.++..++|.|.|+|.|.|..|.+..++.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            4689999999999999999999999998643 3333221  1  124679999987328999999999999999988888


Q ss_pred             EEEE
Q psy2775         647 VTVD  650 (785)
Q Consensus       647 l~V~  650 (785)
                      |.|.
T Consensus       102 L~~~  105 (109)
T cd05773         102 LVST  105 (109)
T ss_pred             EEec
Confidence            8876

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.47  E-value=5.9e-13  Score=109.07  Aligned_cols=91  Identities=21%  Similarity=0.354  Sum_probs=73.4

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC-----CEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD-----EVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .|+|...+....+..|++++|.|.+.|.|.|.++|++++..+....     ++.+...    ...+.|.|.+++.+|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~----~~~~~L~I~~v~~~D~G~   77 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH----ARVSSLTLKYIQYTDAGE   77 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC----ccEEEEEEecCccCcCEE
Confidence            5889888888888889999999999999999999999987764332     2222211    123579999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEE
Q psy2775          87 YTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+|.|.|..|.+...+.|.|
T Consensus        78 Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          78 YLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEecCCCCeeEEEEEEC
Confidence            99999999999888877754

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.47  E-value=2.6e-13  Score=109.49  Aligned_cols=76  Identities=22%  Similarity=0.293  Sum_probs=61.9

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEec--------CCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLL--------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~--------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      |++++|.|.+.|.|.|.+.|+|++..+.        ...++.+ .  ....|+|.++.. +|+|.|+|.|.|..|....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-~--~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-S--QTGDLTITNVQR-SDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-C--CCCeEEEeeCCh-hhCEEEEEEEEcCCCceEEE
Confidence            7899999999999999999999886531        1222222 1  234699999999 99999999999999999999


Q ss_pred             EEEEEEee
Q psy2775         645 ARVTVDVE  652 (785)
Q Consensus       645 ~~l~V~~~  652 (785)
                      +.|.|...
T Consensus        77 ~~l~V~~~   84 (90)
T cd05726          77 AYLEVTDV   84 (90)
T ss_pred             EEEEEeec
Confidence            99999843

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.47  E-value=2.4e-13  Score=106.31  Aligned_cols=78  Identities=24%  Similarity=0.359  Sum_probs=65.0

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      +...+.+|+.++|.|.+.|. .|.|.|+|||.++..+.+..+  .+  ..|.|.++.. +|+|.|+|.|.|..|.....+
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~--~~--~~L~I~~~~~-~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI--TG--EEVQIKDAVP-RDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE--eC--CEEEECCCCh-hhCEEEEEEEeCCCCcccEEE
Confidence            35678999999999999996 568999999999976655433  22  3699999999 999999999999999988777


Q ss_pred             EEEE
Q psy2775         646 RVTV  649 (785)
Q Consensus       646 ~l~V  649 (785)
                      .|.|
T Consensus        76 ~v~V   79 (79)
T cd04973          76 SVNV   79 (79)
T ss_pred             EEeC
Confidence            6654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.46  E-value=1.9e-13  Score=110.06  Aligned_cols=76  Identities=26%  Similarity=0.436  Sum_probs=59.4

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCC----EEecCCCC-e-eEEe-------eCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNN----KPLLSSPK-K-REIF-------DGENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~----~~i~~~~~-~-~~~~-------~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+..+.. . ....       .+...+|.|.+++. +|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence            678999999999999999999964    33322111 1 1111       12345799999999 999999999999999


Q ss_pred             ceEEEEEEEE
Q psy2775         640 SATHGARVTV  649 (785)
Q Consensus       640 ~~~~~~~l~V  649 (785)
                      ...+++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            9999999987

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.46  E-value=3.5e-13  Score=104.92  Aligned_cols=77  Identities=16%  Similarity=0.133  Sum_probs=61.9

Q ss_pred             CeEEEEEEEecC--CCCceEEEeCCEEecC--CCCeeEEee--CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         574 GTIRLMAKVKAS--PAPSIVWFRNNKPLLS--SPKKREIFD--GENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       574 ~~v~l~C~~~g~--P~p~v~W~~~~~~i~~--~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      +++.|.|.+.+.  +++.|.|+|||++|..  +........  ...+.|+|.+++. +|+|.|+|.|.|..++...++.|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~~~~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVDKLSAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccCceEEEEEE
Confidence            478999999874  5779999999999962  222222221  2345799999999 99999999999999999999999


Q ss_pred             EEEe
Q psy2775         648 TVDV  651 (785)
Q Consensus       648 ~V~~  651 (785)
                      .|++
T Consensus        80 ~V~~   83 (85)
T cd05853          80 IVRG   83 (85)
T ss_pred             EEec
Confidence            9983

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.46  E-value=1e-12  Score=104.95  Aligned_cols=86  Identities=20%  Similarity=0.351  Sum_probs=69.4

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEEC-CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN-GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      ...|.++.+.+|+++.|.|.+.|.|. .+.|+++ +..+..+.++.+..++..    ++|+|.+++.+|+|.|+|.|.|.
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~----~~L~I~~v~~~D~G~Y~C~A~N~   78 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVR----SRLTIYNANIEDAGIYRCQATDA   78 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCe----eEEEEecCChHHCEEEEEEEEcC
Confidence            45678899999999999999999998 8999984 667766667666544322    46999999999999999999999


Q ss_pred             CeeE-EEEeeEEE
Q psy2775          95 EGEA-KMDIPVKV  106 (785)
Q Consensus        95 ~~~~-~~~~~v~v  106 (785)
                      .|.. ..++.|.+
T Consensus        79 ~G~~~~~~i~l~~   91 (92)
T cd05866          79 KGQTQEATVVLEI   91 (92)
T ss_pred             CCcEEEEEEEEEE
Confidence            9875 45555554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.46  E-value=5.6e-13  Score=106.28  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=62.3

Q ss_pred             CeEEEEEEEecCCCC--ceEEEeCCEEecCCCC---ee-EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         574 GTIRLMAKVKASPAP--SIVWFRNNKPLLSSPK---KR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       574 ~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~~---~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      ++++|.|.+.|.|.|  .+.|+|+|..+.....   +. .........|.|.+++. +|+|.|+|.|.|..|....++.|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDSLSASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCcEEEEEEE
Confidence            478999999999988  6799999998864321   11 22223456899999999 99999999999999999999999


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|.
T Consensus        80 ~V~   82 (85)
T cd04970          80 IVR   82 (85)
T ss_pred             EEE
Confidence            987

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.46  E-value=9.7e-13  Score=109.52  Aligned_cols=94  Identities=24%  Similarity=0.417  Sum_probs=69.6

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC----CCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET----DEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ||+|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+...    ....+....+. .....+.+..++.+|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS-LFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCc-EEEEEeeccCCCcCcCEEE
Confidence            799999999999999999999999999999999999999988651    11122211111 1111122334478999999


Q ss_pred             EEEEEcCCee-EEEEeeEEE
Q psy2775          88 TVVAKNREGE-AKMDIPVKV  106 (785)
Q Consensus        88 ~C~a~~~~~~-~~~~~~v~v  106 (785)
                      +|.|.|..|. .+..+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999998 555666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.45  E-value=2.5e-13  Score=104.47  Aligned_cols=70  Identities=31%  Similarity=0.532  Sum_probs=58.7

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++|.|.+.|+|.|.+.|+|++..+..+.   ........+|.|.++.. +|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~---~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR---TKFENFNKTLKIDNVSE-EDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc---eeEecCCCEEEECCCCH-HHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999999999999999998875432   12233445799999999 9999999999999999998888877

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.45  E-value=2.3e-13  Score=103.58  Aligned_cols=69  Identities=22%  Similarity=0.499  Sum_probs=57.6

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++|.|.+.|.|.|.+.|+|++..+... ++...   ....|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTA-GDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCCh-hHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            579999999999999999998876433 33333   334699999999 9999999999999999998888765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.45  E-value=3.9e-13  Score=103.64  Aligned_cols=72  Identities=25%  Similarity=0.483  Sum_probs=57.0

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce-EEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  649 (785)
                      ++|.|.+.|+|.|.|+|+|++.++......++.. .....|.|.++.. +|+|.|+|.|.|..|.. ...+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ-LRSGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE-cCCcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999999886432222222 2334699999998 99999999999999985 56677766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.45  E-value=4.9e-13  Score=107.80  Aligned_cols=76  Identities=28%  Similarity=0.441  Sum_probs=60.0

Q ss_pred             cCeEEEEEEEecCCCCceEEEeC----CEEecCCCC--eeEEe-------eCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRN----NKPLLSSPK--KREIF-------DGENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~----~~~i~~~~~--~~~~~-------~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      |+.++|.|.+.|.|.|.|+|+|+    +..+..+..  .....       .....+|+|.+++. +|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence            78999999999999999999994    444433222  11111       12336899999999 999999999999999


Q ss_pred             ceEEEEEEEE
Q psy2775         640 SATHGARVTV  649 (785)
Q Consensus       640 ~~~~~~~l~V  649 (785)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9999999887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.45  E-value=1.5e-12  Score=106.97  Aligned_cols=93  Identities=18%  Similarity=0.303  Sum_probs=73.8

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCC-CCeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKR-EEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~-D~G~   86 (785)
                      +||.|.. +..+.+.+|+++.|.|.+.|.|.| .|.|++++..+...  .++.+..........++|+|.+++.+ |.|.
T Consensus         1 ~pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           1 GPPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence            4778854 567889999999999999999998 69999999988654  45555544333334568999999995 4999


Q ss_pred             EEEEEEcCCeeEEEEeeE
Q psy2775          87 YTVVAKNREGEAKMDIPV  104 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v  104 (785)
                      |.|.|.|..|.+...+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999988776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.45  E-value=1.1e-12  Score=100.14  Aligned_cols=71  Identities=21%  Similarity=0.453  Sum_probs=60.8

Q ss_pred             eEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          29 EVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        29 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      +++|.|.+.|.|.|.++|++++..+....++.+...+       .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~-------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH-------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC-------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4899999999999999999999988776666654433       2788899999999999999999999988877754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.44  E-value=1.2e-12  Score=105.74  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=64.6

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEe-CCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcc-
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGS-  640 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~-  640 (785)
                      .+....+..|+++.|.|.+.|.|+ .+.|++ ++..+....+...... +..++|+|.+++. +|+|.|+|.|.|..|. 
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g~~   83 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKGTE   83 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCCCc
Confidence            345678999999999999999974 999998 6766665555544433 3457899999999 9999999999999754 


Q ss_pred             eEEEEEEE
Q psy2775         641 ATHGARVT  648 (785)
Q Consensus       641 ~~~~~~l~  648 (785)
                      ...++.|.
T Consensus        84 ~~~sv~l~   91 (92)
T cd04977          84 SEATVNLK   91 (92)
T ss_pred             ceeEEEEE
Confidence            45555544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.44  E-value=9.4e-13  Score=108.21  Aligned_cols=90  Identities=24%  Similarity=0.386  Sum_probs=71.4

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC-----CEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD-----EVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +|+|. .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+....     ++.+...    ...++|+|.+++.+|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~   76 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH----ARVSSLTLKDVQLTDAGR   76 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC----ccEEEEEECcCCcCcCEE
Confidence            68885 5668999999999999999999999999999986664332     2222111    123679999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEE
Q psy2775          87 YTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+|.|.|..|....++.|.|
T Consensus        77 Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          77 YDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             eEEEEEeCCCCcEEEEEEeC
Confidence            99999999999887776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.44  E-value=9.4e-13  Score=101.02  Aligned_cols=74  Identities=31%  Similarity=0.487  Sum_probs=60.7

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+|.|.+.|.|.|.|.|+|++..+... .++.+...+.   ...+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNC---GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCC---CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            579999999999999999999988654 4455543332   1246999999999999999999999999988887764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.44  E-value=1.5e-12  Score=105.53  Aligned_cols=83  Identities=19%  Similarity=0.336  Sum_probs=66.5

Q ss_pred             CCeeeecCCceEec---CCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccC-CCCCeEE
Q psy2775          12 PPTFSKKTKPVYAE---ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK-KREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~---~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y   87 (785)
                      .|.|...|.++.+.   +|++++|.|.+.|.|.|.|+|++++..+.......+...+      ..|.|.++. .+|+|.|
T Consensus         1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~------g~L~i~~~~~~~D~G~Y   74 (94)
T cd05848           1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID------GNLIISNPSEVKDSGRY   74 (94)
T ss_pred             CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC------CeEEEccCCccCcCEEE
Confidence            38899999998775   4789999999999999999999999988654433332222      248898875 6999999


Q ss_pred             EEEEEcCCeeEEE
Q psy2775          88 TVVAKNREGEAKM  100 (785)
Q Consensus        88 ~C~a~~~~~~~~~  100 (785)
                      +|.|.|..|...+
T Consensus        75 ~C~A~N~~G~~~S   87 (94)
T cd05848          75 QCLATNSIGSILS   87 (94)
T ss_pred             EEEEEcCCCeEEe
Confidence            9999999997754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.44  E-value=7e-13  Score=108.35  Aligned_cols=86  Identities=27%  Similarity=0.442  Sum_probs=64.5

Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCe-eEEeeCCeEEEEEccC-----CCCCCceeEEEEE
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEA-----DSETDAGDYKVVA  634 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~-~~~~~~~~~~L~i~~~-----~~~~d~G~Y~C~a  634 (785)
                      |+..+.+..+.+|++++|.|.+.|.|.|.|+|+|||..+....+. .....++  .|.|.++     .. +|+|.|+|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~-~D~G~Y~C~a   78 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNK-PDEGFYQCVA   78 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCC-CcCEEEEEEE
Confidence            445566788899999999999999999999999999998754432 2222222  3556555     46 8999999999


Q ss_pred             EcC-Ccce-EEEEEEEE
Q psy2775         635 TNE-LGSA-THGARVTV  649 (785)
Q Consensus       635 ~n~-~g~~-~~~~~l~V  649 (785)
                      .|. .|.. ...+.|.|
T Consensus        79 ~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          79 QNDSLGSIVSRTARLTV   95 (95)
T ss_pred             ECCccCcEEEeeeEEeC
Confidence            999 9987 33455543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.44  E-value=6e-13  Score=105.95  Aligned_cols=79  Identities=25%  Similarity=0.428  Sum_probs=64.8

Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      .....|++++|.|.+.|.|.|.+.|+|++..+......  .......+|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~--~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG--ESRKKKWTLSLKNLKP-EDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc--eecCceEEEEEccCCh-hhCEEEEEEEEcCCccEEEEEEE
Confidence            34667999999999999999999999999887544322  1223456899999999 99999999999999988877776


Q ss_pred             EE
Q psy2775         648 TV  649 (785)
Q Consensus       648 ~V  649 (785)
                      .|
T Consensus        81 ~v   82 (82)
T cd05856          81 DV   82 (82)
T ss_pred             eC
Confidence            54

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.44  E-value=1.9e-12  Score=107.99  Aligned_cols=98  Identities=22%  Similarity=0.314  Sum_probs=75.6

Q ss_pred             CCCCeeeecCCceEe----cCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccC-CCC
Q psy2775          10 GIPPTFSKKTKPVYA----EENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIK-KRE   83 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v----~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~-~~D   83 (785)
                      ..||.|...|....+    ..|.+++|.|.+.|.|.+.+.|++++..+... .++.+..........++|+|.+++ .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            458999887774333    25689999999999999999999999988643 344433222222234679999997 599


Q ss_pred             CeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          84 EGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        84 ~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      .|.|+|.|.|..|.+...+.|.+.
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~  105 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVST  105 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEec
Confidence            999999999999999998888886

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.44  E-value=7.6e-13  Score=102.51  Aligned_cols=73  Identities=25%  Similarity=0.486  Sum_probs=59.0

Q ss_pred             cCeEEEEEEEecCCCCceEEEe-CCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+.++|.|.+.|.|.|.+.|++ ++..+....+.. ...  ..+|.|.++.. +|+|.|+|.|.|..|.++.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~-~~~--~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL-VYD--NGTLDILITTV-KDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEE-Eec--CCEEEEEECCh-hhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7899999999999999999997 566665444332 222  24699999998 9999999999999999888777764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.43  E-value=6.9e-13  Score=98.31  Aligned_cols=66  Identities=26%  Similarity=0.495  Sum_probs=56.2

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      ++|.|.+.|.|.|.++|+|+|..+....            ..+.|.|.++..+|+|.|+|.|+|..|....++.+++.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            5799999999999999999999885321            11469999999999999999999999988887777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=8.2e-13  Score=106.12  Aligned_cols=80  Identities=29%  Similarity=0.473  Sum_probs=64.2

Q ss_pred             eeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE-
Q psy2775         566 EEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH-  643 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~-  643 (785)
                      .+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+...........  ...|.|.++.. +|+|.|+|.|.|..|...+ 
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--DGNLLIAEARK-SDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--CCEEEEeECCc-ccCEEEEEEEEeccCceeee
Confidence            46788999999999998 7999999999999999876433222222  34699999999 9999999999999998654 


Q ss_pred             EEEEE
Q psy2775         644 GARVT  648 (785)
Q Consensus       644 ~~~l~  648 (785)
                      .+.|.
T Consensus        81 ~~~l~   85 (86)
T cd05724          81 AARLS   85 (86)
T ss_pred             eEEEE
Confidence            44443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.42  E-value=8e-13  Score=99.46  Aligned_cols=70  Identities=29%  Similarity=0.470  Sum_probs=55.8

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++|.|.+.|+|.|++.|+|+|.++..+... ....+  .+|.|.++.. +|+|.|+|.|+|..........+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~~~--~~L~I~~v~~-~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHVDG--YSLVIKDVTE-EDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEeCC--CEEEECcCCH-HHCEEEEEEEEccccceEeeEEEEE
Confidence            479999999999999999999998764322 22222  3699999999 9999999999999776666555554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.42  E-value=6.8e-13  Score=103.35  Aligned_cols=70  Identities=29%  Similarity=0.434  Sum_probs=58.4

Q ss_pred             EEEEEEEec-CCCCceEEEeCCEEecCCCCee---EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         576 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKR---EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       576 v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~---~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      +.|.|.+.| .|.|.+.|+|+|.++..+.+..   +.......+|.|.++.. +|+|.|+|.|.|..|.+..++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKL-ADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCc-ccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 9999999999999987655432   22334567899999999 9999999999999999887665

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.42  E-value=2.5e-12  Score=99.57  Aligned_cols=74  Identities=32%  Similarity=0.565  Sum_probs=63.3

Q ss_pred             eEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          29 EVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        29 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      ++.|.|.+.|.|.|.+.|++++..+....++.+.....    .++|.|.+++.+|+|.|+|.|.|..|.++..+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTAS----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCC----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999999999999987777666654432    267999999999999999999999999888877754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=2e-12  Score=100.42  Aligned_cols=74  Identities=24%  Similarity=0.486  Sum_probs=61.1

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK  105 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~  105 (785)
                      |++++|.|.+.|.|.|.++|++++..+...... ......      ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS------GALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC------CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            789999999999999999999999988654321 111111      3599999999999999999999999998888887


Q ss_pred             E
Q psy2775         106 V  106 (785)
Q Consensus       106 v  106 (785)
                      |
T Consensus        75 V   75 (76)
T cd05867          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.41  E-value=1.2e-12  Score=102.31  Aligned_cols=79  Identities=23%  Similarity=0.341  Sum_probs=65.8

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA   98 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~   98 (785)
                      |+...+.+|++++|.|.+.+. .+.+.|+|+|.++....++.+..        .+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~--------~~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG--------EEVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC--------CEEEECCCChhhCEEEEEEEeCCCCcc
Confidence            567899999999999999886 56899999999987766655432        249999999999999999999998887


Q ss_pred             EEEeeEEE
Q psy2775          99 KMDIPVKV  106 (785)
Q Consensus        99 ~~~~~v~v  106 (785)
                      ...+.|+|
T Consensus        72 ~~~~~v~V   79 (79)
T cd04973          72 TTYFSVNV   79 (79)
T ss_pred             cEEEEEeC
Confidence            77666553

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.41  E-value=6.5e-13  Score=106.99  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=64.7

Q ss_pred             eeeeeecCeEEEEEEEec-----CCCCceEEEeCCEEecCC--CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         567 EKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~i~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ...+.+|+++.|.|.+.|     .|.|.|.|||++..+...  .+.++...  ...|.|.++.. +|+|.|+|.|.|..|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~-~DsG~Y~C~~~N~~g   84 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAAL-EDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCc-ccCeEEEEEEcCCCc
Confidence            567889999999999999     689999999999765321  12222222  35799999999 999999999999999


Q ss_pred             ceEEEEEEEE
Q psy2775         640 SATHGARVTV  649 (785)
Q Consensus       640 ~~~~~~~l~V  649 (785)
                      ..+.++.|.|
T Consensus        85 ~~~~~~~L~v   94 (94)
T cd05756          85 CMKVSISLTV   94 (94)
T ss_pred             cEEEEEEEEC
Confidence            9998887765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.41  E-value=4e-12  Score=103.08  Aligned_cols=83  Identities=25%  Similarity=0.396  Sum_probs=65.8

Q ss_pred             CCeeeecCCceEecCC---CeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccC-CCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEEN---SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK-KREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y   87 (785)
                      .|.|...|..+.+.+|   ++++|.|.+.|.|.+.|+|+++|..+.......+...+      ..|.|.++. .+|+|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~------g~L~I~~~~~~~D~G~Y   74 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA------GNLVINNPQKARDAGSY   74 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC------CeEEEccCCccCcCEEE
Confidence            4889999999988776   58999999999999999999999988643322222212      248898765 5999999


Q ss_pred             EEEEEcCCeeEEE
Q psy2775          88 TVVAKNREGEAKM  100 (785)
Q Consensus        88 ~C~a~~~~~~~~~  100 (785)
                      +|.|.|..|...+
T Consensus        75 ~C~A~N~~G~~~s   87 (94)
T cd05850          75 QCLAINRCGTVVS   87 (94)
T ss_pred             EEEEEcCcCcEEE
Confidence            9999999997654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.41  E-value=1.2e-12  Score=101.32  Aligned_cols=68  Identities=25%  Similarity=0.377  Sum_probs=51.4

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCC---CCceeEEEEEEcCCcceEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE---TDAGDYKVVATNELGSATH  643 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~---~d~G~Y~C~a~n~~g~~~~  643 (785)
                      +.|.|.+.|.|.|+|+|+|+|.++..............++|.|..+...   .|.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            4799999999999999999999885443333333334456777766531   3789999999999998665

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.41  E-value=2.4e-12  Score=103.17  Aligned_cols=87  Identities=20%  Similarity=0.309  Sum_probs=68.4

Q ss_pred             CCeeee--cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          12 PPTFSK--KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        12 ~p~~~~--~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .|.|+.  .+.++.+.+|++++|.|.+.|. .|.|.|++++..+... +..+...+      .+|+|.+++.+|+|.|+|
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~------~~L~I~~v~~~D~G~Y~C   72 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDN------RTLTFNNVTRSDTGHYQC   72 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCC------CEEEECcCChhhCEEEEE
Confidence            367754  4567999999999999999999 9999999999887543 34433222      359999999999999999


Q ss_pred             EEEcCCeeEEE-EeeEEE
Q psy2775          90 VAKNREGEAKM-DIPVKV  106 (785)
Q Consensus        90 ~a~~~~~~~~~-~~~v~v  106 (785)
                      .|.|..|.... .+.|.|
T Consensus        73 ~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          73 EASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEcCCCCEEeeeEEEEe
Confidence            99999997544 455554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.41  E-value=1.1e-12  Score=101.52  Aligned_cols=69  Identities=26%  Similarity=0.408  Sum_probs=51.5

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCC---CCCCceeEEEEEEcCCcceEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD---SETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~---~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      +.|.|.+.|+|.|+|+|+|+|..+.......+.......+|.|..+.   .++|+|.|+|.|.|..|.+.+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            47999999999999999999997743322223333344578888753   2257999999999999977654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.41  E-value=1e-12  Score=104.14  Aligned_cols=76  Identities=22%  Similarity=0.305  Sum_probs=57.9

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCE---Ee-cCCCC-eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNK---PL-LSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~---~i-~~~~~-~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      |++++|.|.+.|.|.|.++|+|++.   .+ ..... ...........|+|.++.. +|+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP-QDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCc-ccCEEEEEEEecCCceEEEEEEE
Confidence            7899999999999999999999742   11 11111 1111122346799999999 99999999999999999988888


Q ss_pred             EE
Q psy2775         648 TV  649 (785)
Q Consensus       648 ~V  649 (785)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            65

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.40  E-value=8.1e-13  Score=102.72  Aligned_cols=68  Identities=26%  Similarity=0.478  Sum_probs=53.2

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCC---CCCceeEEEEEEcCCcceEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS---ETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~---~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      ++|.|.+.|+|.|+|+|+|||..+.......+......++|.|.++..   ++|+|.|+|.|.|..|+..+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            479999999999999999999998654433344444556788887642   26899999999999997655

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.40  E-value=2.1e-12  Score=99.95  Aligned_cols=74  Identities=23%  Similarity=0.346  Sum_probs=61.1

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK  105 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~  105 (785)
                      |++++|.|.+.|.|.|.|.|++++.++..... .....++      ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG------DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC------CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            78999999999999999999999998854321 1111122      2489999999999999999999999999998887


Q ss_pred             E
Q psy2775         106 V  106 (785)
Q Consensus       106 v  106 (785)
                      |
T Consensus        75 v   75 (76)
T cd05868          75 V   75 (76)
T ss_pred             e
Confidence            7

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.40  E-value=3.5e-12  Score=99.63  Aligned_cols=76  Identities=21%  Similarity=0.308  Sum_probs=64.1

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+...++    .++|+|.+++.+|+|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGG----YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCC----EEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            7899999999999999999999998887776665554332    256999999999999999999999998877666554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.40  E-value=2.3e-12  Score=99.32  Aligned_cols=73  Identities=26%  Similarity=0.422  Sum_probs=63.3

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+++.|.|.+.|.|.+.+.|++++..+....++.+...       .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD-------GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC-------CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            78999999999999999999999998877766665432       24999999999999999999999999888877754

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.39  E-value=3.7e-12  Score=98.20  Aligned_cols=74  Identities=31%  Similarity=0.473  Sum_probs=60.1

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      ++|.|.+.|.|.|.|.|+|++..+.. ..++.+...+..   ..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG---RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            57999999999999999999998874 345554433221   245999999999999999999999999888877754

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.39  E-value=3.1e-12  Score=98.06  Aligned_cols=74  Identities=23%  Similarity=0.461  Sum_probs=58.8

Q ss_pred             EEEEEEecCCCeeEEEECCEEccCCCCEEEee-cCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775          32 LEVRLVAVPEPDLLWYYNGEPLQETDEVVFSD-QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK  105 (785)
Q Consensus        32 l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~  105 (785)
                      |.|++.|.|.|.|+|||+|..|..+.+..... ......+.++|.|.++..+|+|.|+|.|+|..|++..++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            78999999999999999999998776543221 111222346799999999999999999999999888776654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.39  E-value=4.5e-12  Score=102.12  Aligned_cols=81  Identities=22%  Similarity=0.334  Sum_probs=65.5

Q ss_pred             CCeeeecCCceEecCCC---eEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccC-CCCCeE
Q psy2775          12 PPTFSKKTKPVYAEENS---EVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIK-KREEGV   86 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~---~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~   86 (785)
                      +|.|...|..+.+.+|.   .+.|.|.+.|.|.|.|+|++++..+... .++.+.  +      +.|.|.++. .+|+|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~------g~L~I~~~~~~~D~G~   72 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G------GNLVINNPDKYKDAGR   72 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C------CEEEECcCCcCCCCEE
Confidence            58999999988777655   8999999999999999999999887543 333221  1      349999985 689999


Q ss_pred             EEEEEEcCCeeEEE
Q psy2775          87 YTVVAKNREGEAKM  100 (785)
Q Consensus        87 Y~C~a~~~~~~~~~  100 (785)
                      |+|.|.|..|....
T Consensus        73 Y~C~A~N~~G~~~s   86 (93)
T cd05849          73 YVCIVSNIYGKVRS   86 (93)
T ss_pred             EEEEEEeCcceEEE
Confidence            99999999997654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.38  E-value=6.1e-12  Score=101.54  Aligned_cols=87  Identities=20%  Similarity=0.368  Sum_probs=66.0

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEE-CCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +...|....+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+.   ..++|+|.+++.+|+|.|+|.|.|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDD---VRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCC---CEEEEEEecCCcccCEEEEEEEEc
Confidence            455788899999999999999999875 899998 565565545554433322   236799999999999999999999


Q ss_pred             CCee-EEEEeeEE
Q psy2775          94 REGE-AKMDIPVK  105 (785)
Q Consensus        94 ~~~~-~~~~~~v~  105 (785)
                      ..|. ...++.|.
T Consensus        79 ~~g~~~~~sv~l~   91 (92)
T cd04977          79 AKGTESEATVNLK   91 (92)
T ss_pred             CCCCcceeEEEEE
Confidence            8653 45555443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.38  E-value=5.9e-12  Score=100.73  Aligned_cols=82  Identities=17%  Similarity=0.319  Sum_probs=66.4

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK   99 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~   99 (785)
                      .+.|.+|+++.|.|.+.|.|.|.+.|++++..+....+.. +....    ...+|.|.+++.+|+|.|+|.|.|..|...
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSIN   78 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC----CceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence            4678999999999999999999999999999887654431 11111    124599999999999999999999999988


Q ss_pred             EEeeEEE
Q psy2775         100 MDIPVKV  106 (785)
Q Consensus       100 ~~~~v~v  106 (785)
                      ..+.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05857          79 HTYHLDV   85 (85)
T ss_pred             EEEEEEC
Confidence            8877754

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.37  E-value=4.5e-12  Score=102.49  Aligned_cols=83  Identities=27%  Similarity=0.515  Sum_probs=63.3

Q ss_pred             CeEeeeeeeeeeeec---CeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         559 PLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       559 p~~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      |.|+..+.+..+.++   ++++|.|.+.|+|.|.|+|+|++..+...........+  ..|.|.++...+|+|.|+|.|+
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEE
Confidence            778887777766554   67999999999999999999999988543222222222  3588887763289999999999


Q ss_pred             cCCcceEE
Q psy2775         636 NELGSATH  643 (785)
Q Consensus       636 n~~g~~~~  643 (785)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (91)
T cd04967          80 NIVGTVLS   87 (91)
T ss_pred             cCCCEEEe
Confidence            99997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.37  E-value=5.4e-12  Score=111.34  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=84.3

Q ss_pred             EEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeEC
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKD  150 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~  150 (785)
                      .|+|.+++.+|+|.|.|.+.+..+.....+.|.|.    .+|.+...+.......|+.+.|.|.+.|. |. +.|+|+++
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~   77 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE   77 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence            49999999999999999999988888888888887    56777665555555578999999999885 54 48999999


Q ss_pred             CEEccc------ce----E-EEeCC----EEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         151 GKLIKD------RQ----I-TSEKN----THTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       151 g~~~~~------~~----~-~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      |.....      ..    . ...++    .+.|.|.....++.+.|+|++.+..
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            854211      10    1 11111    3467777666667889999998764

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.37  E-value=5.1e-12  Score=98.65  Aligned_cols=75  Identities=20%  Similarity=0.336  Sum_probs=61.8

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |++++|.|.+.|.|.|.|.|++++..+............     ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD-----GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEcc-----CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999999999999999999988655432111111     145999999999999999999999999988888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.36  E-value=2.9e-12  Score=97.84  Aligned_cols=70  Identities=26%  Similarity=0.412  Sum_probs=59.8

Q ss_pred             EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      +.|.|.+.|.|.|.+.|++++..+............+|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999999999998776543333344568999999999999999999999999888888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.36  E-value=8.6e-12  Score=99.91  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCC--CCeeEEee----CCeEEEEEccCCCCCC-cee
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSETD-AGD  629 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~--~~~~~~~~----~~~~~L~i~~~~~~~d-~G~  629 (785)
                      ||.+ .....+.+.+|++++|.|.+.+.|+| .|.|.+++..|..+  .++.+...    +..++|+|.++.. .| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~-~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIME-ADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcc-ccCCcE
Confidence            3555 55567789999999999999999998 68999988877553  35544432    4678999999987 56 799


Q ss_pred             EEEEEEcCCcceEEEEEE
Q psy2775         630 YKVVATNELGSATHGARV  647 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~~~l  647 (785)
                      |.|.|.|..|++...+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999999887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.36  E-value=6.8e-12  Score=97.82  Aligned_cols=74  Identities=26%  Similarity=0.442  Sum_probs=59.1

Q ss_pred             EEEEEEecCCCeeEEEECCEEccCCCCEEEeecCC---ccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775          32 LEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD---MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK  105 (785)
Q Consensus        32 l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~  105 (785)
                      |.|.+.|.|.|.|+|+|+|..+.............   .....+.|+|.+++.+|+|.|+|.|.|..|.+..++.|.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            68999999999999999999997766543322111   222346799999999999999999999999988877654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.35  E-value=8e-12  Score=98.91  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=60.7

Q ss_pred             CeEEEEEEEEecCCC--eeEEEECCEEccCCC---CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEe
Q psy2775          28 SEVTLEVRLVAVPEP--DLLWYYNGEPLQETD---EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI  102 (785)
Q Consensus        28 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~  102 (785)
                      ++++|.|.+.|.|.|  .+.|++++..+....   ++......   ...++|+|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~   77 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVK---ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA   77 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEec---ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence            579999999999886  589999998875432   22111111   1125699999999999999999999999999999


Q ss_pred             eEEEe
Q psy2775         103 PVKVN  107 (785)
Q Consensus       103 ~v~v~  107 (785)
                      .|.|.
T Consensus        78 ~L~V~   82 (85)
T cd05854          78 TLVVR   82 (85)
T ss_pred             EEEEE
Confidence            99987

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.35  E-value=5.3e-12  Score=96.14  Aligned_cols=70  Identities=29%  Similarity=0.552  Sum_probs=58.3

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +.|.|.+.|.|.|.+.|+|++..+....+...  ..      .+|.|.+++.+|+|.|+|.|.|..|....++++++.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~--~~------~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK--SG------HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc--CC------CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            47999999999999999999999876643321  11      359999999999999999999999988877777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.33  E-value=8.5e-12  Score=96.93  Aligned_cols=74  Identities=23%  Similarity=0.512  Sum_probs=60.5

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      |...|+++.+.+|+++.|.|.+.|.|.| .|.|++++.++....      ..    ..+.|+|..+  .|+|.|.|.|.|
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~----~~s~L~i~~~--~d~g~Y~C~A~N   68 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------AP----SPSVLNVPGL--NETSKFSCEAHN   68 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CC----CCCEEEEccc--cCCeEEEEEEEe
Confidence            5678999999999999999999999999 799999999885411      00    1145999887  478999999999


Q ss_pred             CCeeEEE
Q psy2775          94 REGEAKM  100 (785)
Q Consensus        94 ~~~~~~~  100 (785)
                      ..|....
T Consensus        69 ~~G~~~s   75 (81)
T cd05749          69 AKGVTTS   75 (81)
T ss_pred             ccCcEEe
Confidence            9996554

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.33  E-value=8.6e-12  Score=99.21  Aligned_cols=80  Identities=26%  Similarity=0.390  Sum_probs=64.1

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      .+.+..|++++|.|.+.|.|.|.+.|++++..+.........      ....+|.|.+++.+|+|.|+|.|.|..|....
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   76 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR------KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA   76 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec------CceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence            456778999999999999999999999999877544332211      11256999999999999999999999998877


Q ss_pred             EeeEEE
Q psy2775         101 DIPVKV  106 (785)
Q Consensus       101 ~~~v~v  106 (785)
                      .+.|.|
T Consensus        77 ~~~v~v   82 (82)
T cd05856          77 TYKVDV   82 (82)
T ss_pred             EEEEeC
Confidence            776653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>TIGR00864 PCC polycystin cation channel protein

Probab=99.33  E-value=9e-07  Score=107.28  Aligned_cols=498  Identities=15%  Similarity=0.183  Sum_probs=268.8

Q ss_pred             CCCeEEEEE--EEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceE
Q psy2775          82 REEGVYTVV--AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI  159 (785)
Q Consensus        82 ~D~G~Y~C~--a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~  159 (785)
                      ...|.|...  |.|..|.......+.|..  + ...+........+..+..+.|.-......+..+.|.+++.....   
T Consensus      1481 ~~~GtYtVtLTvtN~~Gsst~T~~VtV~~--p-V~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~--- 1554 (2740)
T TIGR00864      1481 NSPGDFNIRLAAANEVGKNEATLNVAVKA--R-VRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPI--- 1554 (2740)
T ss_pred             CCCceEEEEEEEECCCCceEEEEEEEEec--c-ccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCccc---
Confidence            458888764  457777766666666653  1 11233333333445566787875443334568999885432111   


Q ss_pred             EEeCCEEEEEEcccCCCCcEEEEE--EEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCe
Q psy2775         160 TSEKNTHTLTLIQCSTKDKGRYSV--KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS  237 (785)
Q Consensus       160 ~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  237 (785)
                       ........     +....|.|+.  .|.|..|....+..+.|+.....                 ..|......-... 
T Consensus      1555 -~~npt~~y-----TY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~G-----------------lqI~~~~~~gg~~- 1610 (2740)
T TIGR00864      1555 -FGGNTIFY-----TFRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEG-----------------LQILGETAEGGGG- 1610 (2740)
T ss_pred             -cCCCceEE-----eecCCceEEEEEEEecCCCccceeEEEEEeecccc-----------------eEEEeecccccCC-
Confidence             01111112     2235588865  56688888888887877643210                 0000000000000 


Q ss_pred             eeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccc-eEEEeCCEEEEEEccCCCCCCeEEEE--EEEeCCCce
Q psy2775         238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QITSEKNTHTLTLIQCSTKDKGRYSV--KVTNKEGTV  314 (785)
Q Consensus       238 ~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C--~~~n~~g~~  314 (785)
                      -...+....+..+..+.|+-.+..-....+.|...+..-... .....+....++.     .+.|.|..  .+.|..|..
T Consensus      1611 ~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~~~tGk~~~vt~-----~~pG~Y~VtL~aSN~vG~~ 1685 (2740)
T TIGR00864      1611 GVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAFAGSGKGAKLNP-----LEAGPCDIFLQAANLLGQA 1685 (2740)
T ss_pred             cccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCccccccCceeEEec-----CCCceEEEEEEEeecccce
Confidence            000011123445666777765544345578886621110000 0111222222322     45577755  456889999


Q ss_pred             EEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEE-cCCCCcEEEEEcCcEEEEEEcCCCCCC
Q psy2775         315 ESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQE-IKTSKKVTIEKKGTIRKLLIRNISVHD  392 (785)
Q Consensus       315 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~l~i~~~~~~d  392 (785)
                      ..+..+.+.++-..+........+..|+.+.|.-.... ....++|..++.. ........      .+       +...
T Consensus      1686 t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------tH-------tf~~ 1752 (2740)
T TIGR00864      1686 TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------SH-------SFPS 1752 (2740)
T ss_pred             eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------EE-------EccC
Confidence            88888888875555555555666778999998876654 6779999876532 11111100      00       1223


Q ss_pred             ceEEEEE--EeccceE----EEEEEEecCCcccccCCC----eEEecCCcEEEEEEEeCC-CceEEEEECCEEcccCCCE
Q psy2775         393 EGEYTCS--LPDQETS----AELNVVELPPEISVPLQD----VKVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENV  461 (785)
Q Consensus       393 ~G~Y~C~--a~n~~~~----~~~~v~~~~~~~~~~~~~----~~v~~g~~~~l~C~~~~~-~~~i~W~~~~~~~~~~~~~  461 (785)
                      .|.|.-.  |.|..++    ..+.|.+....+.+....    ..+..|.++.|.-.+..+ +..+.|.+++..-..    
T Consensus      1753 ~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~---- 1828 (2740)
T TIGR00864      1753 AGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM---- 1828 (2740)
T ss_pred             CceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc----
Confidence            6777554  4454333    333343333222222111    135567788887776554 556888886543111    


Q ss_pred             EEEEeCcEEEEEEccCCCCCcEEEEEE--Eeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEec-CCce
Q psy2775         462 TLSIDGKKQKLIIFSAGLEDAGEYSCR--VGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS-SPDI  537 (785)
Q Consensus       462 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~--a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  537 (785)
                           +....     .+..++|.|+-.  |.|. +....+..+.|+.+...+... ..-.....+..++|++.++ ++.+
T Consensus      1829 -----gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~-as~~~~~~n~~v~fsa~l~~GS~V 1897 (2740)
T TIGR00864      1829 -----GKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELK-ASKKIAAIGEKVEFQILLAAGSAV 1897 (2740)
T ss_pred             -----cceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEe-cccccccCCCEEEEEEEecCCCce
Confidence                 11111     345788998765  5687 888889999999886554443 3333455677889999886 5889


Q ss_pred             eeEEeecccccccC---------CCCCC---------------CCCe---Eeeeeeee--------eeeecCeEEEEEEE
Q psy2775         538 QVKWLNLFIVPTCP---------LGSPG---------------QAPL---FIERFEEK--------TVKEKGTIRLMAKV  582 (785)
Q Consensus       538 ~~~W~~~~~~~~~~---------~~~~~---------------~~p~---~~~~~~~~--------~v~~g~~v~l~C~~  582 (785)
                      .+.|..++....-.         ....+               ++..   ++.+.+..        -+..|+..+|...+
T Consensus      1898 tf~w~fGdgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v 1977 (2740)
T TIGR00864      1898 NFRLQIGGAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANV 1977 (2740)
T ss_pred             EEEEEeCCCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEE
Confidence            99999775431100         00000               1111   11111111        14668888898887


Q ss_pred             ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEE--EEEEcCCcceEEEEEEEEE
Q psy2775         583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK--VVATNELGSATHGARVTVD  650 (785)
Q Consensus       583 ~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~  650 (785)
                      .-.-+..+.|+.+-..+..+..  .+..+...+.+.      ...|.|.  ..|.|..|....+..|.|+
T Consensus      1978 ~~g~~V~f~W~f~~~~~~g~~~--~~~~G~~vty~~------~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864      1978 QRGKPVAFAWTFDLHHLHGDSL--VIHMGKDVSYTA------EAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred             ecCCceEEEEEeeecccCCCcc--eeecCCceEEcc------CCCcEEEEEEEEEcccCcccccEEEEEE
Confidence            6444457999865443322221  233344433333      4578876  5677999998777777776

Note: this model has been restricted to the amino half because for technical reasons.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.33  E-value=6.9e-12  Score=95.22  Aligned_cols=68  Identities=24%  Similarity=0.465  Sum_probs=58.1

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV  104 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v  104 (785)
                      |.|.|.+.|.|.|.|.|++++..+....++.+...       ++|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE-------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC-------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999999999999998877666655332       359999999999999999999999988877654

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.32  E-value=1.3e-11  Score=93.05  Aligned_cols=68  Identities=28%  Similarity=0.420  Sum_probs=55.3

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV  104 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v  104 (785)
                      |++++|.|.+.|.|.|.|.|++++..+....+...   +     ...|+|.+++  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---~-----~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---G-----RNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---C-----ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            78999999999999999999999998865543321   1     1358999874  8999999999999988777655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.32  E-value=6.5e-12  Score=99.88  Aligned_cols=76  Identities=16%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             cCeEEEEEEEecC--CCCceEEEeCCEEecCCCCe---eE--EeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         573 KGTIRLMAKVKAS--PAPSIVWFRNNKPLLSSPKK---RE--IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       573 g~~v~l~C~~~g~--P~p~v~W~~~~~~i~~~~~~---~~--~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      |++++|.|.+.|.  |.|.++|++++..+......   ..  ......++|+|.+++. +|+|.|+|.|+|..|....++
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCceEEEE
Confidence            7899999999999  88899999988765322110   11  1122456899999999 999999999999999999998


Q ss_pred             EEEE
Q psy2775         646 RVTV  649 (785)
Q Consensus       646 ~l~V  649 (785)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            8877

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.32  E-value=5.2e-12  Score=97.55  Aligned_cols=67  Identities=19%  Similarity=0.300  Sum_probs=55.7

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      |.+...++...+.+|++++|.|.+.|.|.+ .+.|+|||..+..          ....|.|.++ . +|+|.|+|.|.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~-~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-N-NDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-c-cCCEEeEEECCCC
Confidence            445566677899999999999999999875 7999999998732          2345899999 7 9999999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.31  E-value=1.6e-11  Score=100.37  Aligned_cols=84  Identities=23%  Similarity=0.336  Sum_probs=64.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEccc-----CCCCCeEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSI-----KKREEGVY   87 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~-----~~~D~G~Y   87 (785)
                      |...|....+.+|+++.|.|.+.|.|.+.|.|+|++..+.....  ..+..++       +|.|.++     ..+|.|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-------~l~i~~v~~~~~~~~D~G~Y   74 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-------SLLITSVVHSKHNKPDEGFY   74 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-------eEEEeeeeccCCCCCcCEEE
Confidence            67789999999999999999999999999999999998865443  2222221       2555555     68999999


Q ss_pred             EEEEEcC-CeeE-EEEeeEE
Q psy2775          88 TVVAKNR-EGEA-KMDIPVK  105 (785)
Q Consensus        88 ~C~a~~~-~~~~-~~~~~v~  105 (785)
                      +|.|.|. .|.. +..+.|.
T Consensus        75 ~C~a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          75 QCVAQNDSLGSIVSRTARLT   94 (95)
T ss_pred             EEEEECCccCcEEEeeeEEe
Confidence            9999999 8865 3344443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.31  E-value=8.5e-12  Score=93.91  Aligned_cols=69  Identities=32%  Similarity=0.517  Sum_probs=57.2

Q ss_pred             EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      +.|.|.+.|.|.|.++|+|||.++......  .....|.|.++..+|+|.|+|.|.|..|..+...++++.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            468999999999999999999998754322  123479999999999999999999999988777666653

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.31  E-value=1.8e-11  Score=95.07  Aligned_cols=71  Identities=24%  Similarity=0.499  Sum_probs=56.0

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE--EeeEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM--DIPVKV  106 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~--~~~v~v  106 (785)
                      ++|.|.+.|.|.|.|.|+|++.++.... +..+....      .+|.|.+++.+|+|.|+|.|.|..|....  .++|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKE------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCC------CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            5799999999999999999999886654 23332221      35999999999999999999999997654  455555

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.30  E-value=1.5e-11  Score=99.25  Aligned_cols=76  Identities=18%  Similarity=0.333  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEcc--------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQ--------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA   98 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~   98 (785)
                      |++++|.|.+.|.|.|.+.|++++..+.        ...++.+...       ..|+|.+++.+|+|.|+|.|.|..|..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~~   73 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT-------GDLTITNVQRSDVGYYICQTLNVAGSI   73 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC-------CeEEEeeCChhhCEEEEEEEEcCCCce
Confidence            7899999999999999999999886431        1223332211       349999999999999999999999999


Q ss_pred             EEEeeEEEeCC
Q psy2775          99 KMDIPVKVNTG  109 (785)
Q Consensus        99 ~~~~~v~v~~~  109 (785)
                      ...+.|.|...
T Consensus        74 ~~~~~l~V~~~   84 (90)
T cd05726          74 LTKAYLEVTDV   84 (90)
T ss_pred             EEEEEEEEeec
Confidence            99999998753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.30  E-value=3.9e-11  Score=96.12  Aligned_cols=93  Identities=19%  Similarity=0.308  Sum_probs=73.6

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCC-CeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKRE-EGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~   86 (785)
                      +||.| ...+.+.+.+|++++|.|.+.+.|+| .|.|.+++..+..+  .++.+..........++|+|.++..+| .|.
T Consensus         1 gpP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           1 GPPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence            47777 77788999999999999999777775 67998888777543  566665543333345889999998877 899


Q ss_pred             EEEEEEcCCeeEEEEeeE
Q psy2775          87 YTVVAKNREGEAKMDIPV  104 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v  104 (785)
                      |.|.|.|..|.+...+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999998877665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=1.1e-11  Score=95.22  Aligned_cols=70  Identities=24%  Similarity=0.439  Sum_probs=59.9

Q ss_pred             EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      +.|.|.+.|.|.|.+.|++++..+.............|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999999999999999998876544444444568999999999999999999999999888888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.29  E-value=8.9e-12  Score=96.23  Aligned_cols=67  Identities=22%  Similarity=0.327  Sum_probs=57.2

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCC-CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      |.++..|+...+.+|++++|+|.+.+.|. ..+.|++++..+...        +      ..|+|.++ .+|+|.|+|.|
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~--------~------~~l~i~~~-~~dsG~Y~C~a   65 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT--------T------NSYRIRAA-NNDSGEYRCQT   65 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc--------C------CeEEEeec-ccCCEEeEEEC
Confidence            67888999999999999999999988775 479999999877321        1      34899999 99999999999


Q ss_pred             EcC
Q psy2775          92 KNR   94 (785)
Q Consensus        92 ~~~   94 (785)
                      .+.
T Consensus        66 ~~~   68 (78)
T cd05752          66 QGS   68 (78)
T ss_pred             CCC
Confidence            875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.29  E-value=1.4e-11  Score=95.75  Aligned_cols=70  Identities=23%  Similarity=0.397  Sum_probs=55.3

Q ss_pred             EEEEEEEec-CCCCceEEEeCCEEecCCCC----eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         576 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPK----KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       576 v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~----~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      +.|.|.+.+ .|.+.++|||+|+.+.....    +.+........|.|.++.. +|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASL-ADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCc-ccCEEEEEEEEeCCCceeEEEe
Confidence            479999875 68889999999998864321    2222334557899999999 9999999999999998887665

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.29  E-value=4.6e-11  Score=105.43  Aligned_cols=116  Identities=15%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             EEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccc
Q psy2775         471 KLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT  549 (785)
Q Consensus       471 ~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  549 (785)
                      +|+|.+++..|+|.|+|.+.+. +.....+.|.|..+|.                                         
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~-----------------------------------------   40 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR-----------------------------------------   40 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc-----------------------------------------
Confidence            6999999999999999999987 7788888999987632                                         


Q ss_pred             cCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecC----CCCe----eEEeeCC----eEE
Q psy2775         550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLS----SPKK----REIFDGE----NII  615 (785)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~----~~~~----~~~~~~~----~~~  615 (785)
                                 +...+......+|+.++|.|.+.|+ |. +.|+|+++|.....    ....    .....++    .+.
T Consensus        41 -----------v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~  109 (139)
T cd05771          41 -----------VRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSH  109 (139)
T ss_pred             -----------eEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEE
Confidence                       2111122234478999999999996 54 48999999864211    0111    1111122    245


Q ss_pred             EEEccCCCCCCceeEEEEEEcCCc
Q psy2775         616 LELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       616 L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      |.+..-.. ++.+.|+|.+.+...
T Consensus       110 L~v~~~~~-~~g~~ytC~V~H~~l  132 (139)
T cd05771         110 LTLEPGTE-DAGATYTCRVSHVSL  132 (139)
T ss_pred             EEecCCcc-CCCCEEEEEEEcCCC
Confidence            77765544 567789999998654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.29  E-value=2.2e-11  Score=97.80  Aligned_cols=76  Identities=28%  Similarity=0.436  Sum_probs=62.8

Q ss_pred             cCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          18 KTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      .|..+.+.+|+++.|.|.+ .|.|.+.+.|++++..+... .++.+.. +      +.|.|.+++.+|+|.|+|.|.|..
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~------~~L~I~~~~~~D~G~Y~C~a~N~~   74 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-D------GNLLIAEARKSDEGTYKCVATNMV   74 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-C------CEEEEeECCcccCEEEEEEEEecc
Confidence            5778999999999999998 78899999999999988663 3333322 1      359999999999999999999998


Q ss_pred             eeEEE
Q psy2775          96 GEAKM  100 (785)
Q Consensus        96 ~~~~~  100 (785)
                      |....
T Consensus        75 G~~~s   79 (86)
T cd05724          75 GERES   79 (86)
T ss_pred             Cceee
Confidence            87543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>TIGR00864 PCC polycystin cation channel protein

Probab=99.28  E-value=2.8e-06  Score=103.15  Aligned_cols=551  Identities=13%  Similarity=0.143  Sum_probs=300.7

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE--EE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV--AK   92 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~--a~   92 (785)
                      |...+....+..+.++.|+-.........+.|.+++.........       .+    +.     +-...|.|...  |.
T Consensus      1514 ~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~~np-------t~----~y-----TY~spGtYtVtLTvt 1577 (2740)
T TIGR00864      1514 LTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIFGGN-------TI----FY-----TFRSVGTFNIIVTAE 1577 (2740)
T ss_pred             eEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCccccCCC-------ce----EE-----eecCCceEEEEEEEe
Confidence            444444555666778888855433345678998876422111110       00    01     12346888654  45


Q ss_pred             cCCeeEEEEeeEEEeCCCCCCCceecC-----------CCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc-eEE
Q psy2775          93 NREGEAKMDIPVKVNTGKPEKPSILEP-----------LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QIT  160 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~~~~~~~p~i~~~-----------~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-~~~  160 (785)
                      |..|....+..+.|.... .--.|...           ....-+..|..+.|.-.+.......++|...+..-... ...
T Consensus      1578 N~~Gs~~~T~~i~V~~~I-~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~~ 1656 (2740)
T TIGR00864      1578 NDVGAAQASIFLFVLQEI-EGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAFA 1656 (2740)
T ss_pred             cCCCccceeEEEEEeecc-cceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCcccc
Confidence            788877666666665210 00112111           01123445666777766544445578886521110001 011


Q ss_pred             EeCCEEEEEEcccCCCCcEEEEE--EEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCee
Q psy2775         161 SEKNTHTLTLIQCSTKDKGRYSV--KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI  238 (785)
Q Consensus       161 ~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  238 (785)
                      ..+....+.     ..+.|.|..  .|.|..|....+..+.|....                               ..+
T Consensus      1657 ~tGk~~~vt-----~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi-------------------------------~~L 1700 (2740)
T TIGR00864      1657 GSGKGAKLN-----PLEAGPCDIFLQAANLLGQATADCTIDFLEPA-------------------------------GNL 1700 (2740)
T ss_pred             ccCceeEEe-----cCCCceEEEEEEEeecccceeeEEEEEEEEEc-------------------------------Cce
Confidence            122222332     356687765  567888888888777776422                               122


Q ss_pred             eecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEE--EEeCCCceEE
Q psy2775         239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK--VTNKEGTVES  316 (785)
Q Consensus       239 ~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~n~~g~~~~  316 (785)
                      ........+..|+.++|.-...+-....++|..++..-.    .......+.     +....|.|...  |.|..|....
T Consensus      1701 ~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~----~~s~p~~tH-----tf~~~G~y~VtVta~N~vss~~~ 1771 (2740)
T TIGR00864      1701 MLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDL----ETSEPFMSH-----SFPSAGLHLVTMKAFNELGSANA 1771 (2740)
T ss_pred             EEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCc----ccCCCceEE-----EccCCceEEEEEEEEccccccce
Confidence            233334455678999999877777788999998653211    000000011     12345777665  4588887777


Q ss_pred             EEEEEEeccccceeeeccc----eeEeeCccEEEEEEEc-CCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCC
Q psy2775         317 AANLNVDQGKAEFIKKLDD----LEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH  391 (785)
Q Consensus       317 ~~~l~v~~~~~~~~~~~~~----~~~~~g~~~~l~C~~~-~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~  391 (785)
                      +..+.|.++-..+......    ..+..|..+.|.-.+. +.+..+.|..++..-..+..           ..   .+..
T Consensus      1772 s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~-----------v~---~Tf~ 1837 (2740)
T TIGR00864      1772 SEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH-----------AC---MTFP 1837 (2740)
T ss_pred             eEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce-----------eE---EecC
Confidence            7788887643333222111    1344567777766654 45668888876542111111           01   2345


Q ss_pred             CceEEEEE--Eeccce----EEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCE-EcccCCCEEE
Q psy2775         392 DEGEYTCS--LPDQET----SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGK-EIAFSENVTL  463 (785)
Q Consensus       392 d~G~Y~C~--a~n~~~----~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~-~~~~~~~~~~  463 (785)
                      +.|.|+-.  |.|..+    +..+.|.+....+........+..|+.++|.+.+.. ....+.|..++. .........+
T Consensus      1838 ~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~ 1917 (2740)
T TIGR00864      1838 DAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRF 1917 (2740)
T ss_pred             CCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeE
Confidence            68888665  456433    344555554444444445556778999999998876 466788987643 2211011010


Q ss_pred             EEeCcEEEEEEccCCCCCcEEE--EEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEec-CCceee
Q psy2775         464 SIDGKKQKLIIFSAGLEDAGEY--SCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS-SPDIQV  539 (785)
Q Consensus       464 ~~~~~~~~L~i~~~~~~d~G~Y--~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  539 (785)
                                ..  .....|.|  +-.|.|. +.......+.|.++-..+..........+.+...+|...+. +.++.+
T Consensus      1918 ----------~H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f 1985 (2740)
T TIGR00864      1918 ----------SH--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAF 1985 (2740)
T ss_pred             ----------Ee--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEE
Confidence                      01  12234444  5556786 66777777777666333322222222357888899999886 688999


Q ss_pred             EEeeccc-------------ccccCCCCCC---------------CCCeEeee--------ee--eeeeeecCeEEEEEE
Q psy2775         540 KWLNLFI-------------VPTCPLGSPG---------------QAPLFIER--------FE--EKTVKEKGTIRLMAK  581 (785)
Q Consensus       540 ~W~~~~~-------------~~~~~~~~~~---------------~~p~~~~~--------~~--~~~v~~g~~v~l~C~  581 (785)
                      .|+...+             .+.......|               ..+..+.-        +.  +.....+..++|+|.
T Consensus      1986 ~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~ 2065 (2740)
T TIGR00864      1986 AWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAA 2065 (2740)
T ss_pred             EEEeeecccCCCcceeecCCceEEccCCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEE
Confidence            9985522             1111111111               01111111        11  223455788999999


Q ss_pred             EecCCC-CceEEEeC-CEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEE--EEcCCcceEEEEEEEEEeeccCCC
Q psy2775         582 VKASPA-PSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV--ATNELGSATHGARVTVDVEKVGRP  657 (785)
Q Consensus       582 ~~g~P~-p~v~W~~~-~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~V~~~~~~~p  657 (785)
                      +...+. ..+.|-++ |......+..+.        .+-    - ...|.|.-.  |.|........++|.|.+...-.|
T Consensus      2066 ~~~~~~~v~~~WDFGDGt~~~~T~~~~~--------sHt----Y-~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~C~~P 2132 (2740)
T TIGR00864      2066 TSPKPNFMACHWDFGDGSAGQDTDEPRA--------EHE----Y-LHPGDYRVQVNASNLVSFFSAHAEINVQVLACEEP 2132 (2740)
T ss_pred             EccCCCcEEEEEEecCCCCccccCCcee--------EEE----e-cCCccEEEEEEEEcceeeeeeEEEEEEEEecCCCC
Confidence            876554 48999664 444332211111        111    1 355888765  568888888999999998888888


Q ss_pred             CCccccccc
Q psy2775         658 PINSIDIDR  666 (785)
Q Consensus       658 ~~~~~~~~~  666 (785)
                      .+......+
T Consensus      2133 ~V~i~~~~~ 2141 (2740)
T TIGR00864      2133 EVDVVLALQ 2141 (2740)
T ss_pred             CcEeccCce
Confidence            776655544

Note: this model has been restricted to the amino half because for technical reasons.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.28  E-value=1.4e-11  Score=93.81  Aligned_cols=69  Identities=26%  Similarity=0.528  Sum_probs=58.1

Q ss_pred             EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      +.|.|.+.|.|.|.+.|+|++..+........ ...+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47999999999999999999887765543333 3447999999999999999999999999888887765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.27  E-value=2.6e-11  Score=96.61  Aligned_cols=77  Identities=17%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             CeEEEEEEEEecCCC--eeEEEECCEEccCCC---CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEe
Q psy2775          28 SEVTLEVRLVAVPEP--DLLWYYNGEPLQETD---EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI  102 (785)
Q Consensus        28 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~  102 (785)
                      ++++|.|.+.|.|.+  .+.|++++..+....   .+......   ...+.|+|.+++.+|+|.|+|.|.|..|.....+
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~   77 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGK---DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA   77 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecc---cccceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence            578999999999877  679999999875432   11111110   1124699999999999999999999999999998


Q ss_pred             eEEEe
Q psy2775         103 PVKVN  107 (785)
Q Consensus       103 ~v~v~  107 (785)
                      .|.|.
T Consensus        78 ~l~V~   82 (85)
T cd04970          78 DLIVR   82 (85)
T ss_pred             EEEEE
Confidence            89887

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.27  E-value=1.1e-11  Score=97.32  Aligned_cols=69  Identities=22%  Similarity=0.338  Sum_probs=51.0

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEec--------CCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce-EEEEE
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLL--------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGAR  646 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~--------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~  646 (785)
                      ++|.|.+.|+|.|.|.|+|++....        ...+... .  ...+|.|.++.. +|+|.|+|.|.|..|.. ..++.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-~--~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~   76 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-L--SNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSMV   76 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-e--cCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEEE
Confidence            5799999999999999999643211        1122211 1  235799999999 99999999999999986 44454


Q ss_pred             EE
Q psy2775         647 VT  648 (785)
Q Consensus       647 l~  648 (785)
                      |.
T Consensus        77 l~   78 (79)
T cd05734          77 LT   78 (79)
T ss_pred             Ee
Confidence            44

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.27  E-value=5.3e-11  Score=96.24  Aligned_cols=82  Identities=23%  Similarity=0.426  Sum_probs=64.0

Q ss_pred             CeeeecCCceEecCC---CeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCC-CCCeEEE
Q psy2775          13 PTFSKKTKPVYAEEN---SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK-REEGVYT   88 (785)
Q Consensus        13 p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~   88 (785)
                      |.|..+|..+.+.+|   +++.|.|.+.|.|.+.|+|++++..+.......+....      ..|.|.++.. +|+|.|+
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y~   75 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG------GNLVISNPSKAKDAGRYQ   75 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC------CEEEEecCCccCCCEEEE
Confidence            789999999887654   57999999999999999999999988433222222211      2488988874 8999999


Q ss_pred             EEEEcCCeeEEE
Q psy2775          89 VVAKNREGEAKM  100 (785)
Q Consensus        89 C~a~~~~~~~~~  100 (785)
                      |.|.|..|...+
T Consensus        76 C~a~N~~G~~~S   87 (91)
T cd04967          76 CLASNIVGTVLS   87 (91)
T ss_pred             EEEEcCCCEEEe
Confidence            999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.27  E-value=4.7e-11  Score=95.76  Aligned_cols=81  Identities=26%  Similarity=0.485  Sum_probs=66.0

Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      ..+..|+.++|.|.+.|+|.|.+.|+|++..+.......... ......|.|.++.. +|+|.|.|.|.|..|..+.++.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~~~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGSINHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCceEEEEEE
Confidence            356789999999999999999999999999886554332221 23456799999999 9999999999999999888777


Q ss_pred             EEE
Q psy2775         647 VTV  649 (785)
Q Consensus       647 l~V  649 (785)
                      |.|
T Consensus        83 l~v   85 (85)
T cd05729          83 VDV   85 (85)
T ss_pred             EeC
Confidence            754

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.27  E-value=3.7e-11  Score=97.20  Aligned_cols=82  Identities=22%  Similarity=0.287  Sum_probs=62.8

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeC--------CEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRN--------NKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--------~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +++.+.+|++++|.|.+.|.|.|.+.|++.        +.....+.++..... ...++|+|.+++. +|+|.|+|.+.+
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~t   83 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLFT   83 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeEe
Confidence            478899999999999999999999999863        222333445544332 3567899999999 999999999998


Q ss_pred             CCcceEEEEEEEE
Q psy2775         637 ELGSATHGARVTV  649 (785)
Q Consensus       637 ~~g~~~~~~~l~V  649 (785)
                      ..+ ...++.|.|
T Consensus        84 ~~~-~~~~~~l~v   95 (95)
T cd07701          84 MPV-KTSKAYLTV   95 (95)
T ss_pred             ecC-ccEEEEEEC
Confidence            544 466666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.26  E-value=4.2e-11  Score=93.35  Aligned_cols=77  Identities=13%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             CeEEEEEEEEe--cCCCeeEEEECCEEccC--CC-CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEe
Q psy2775          28 SEVTLEVRLVA--VPEPDLLWYYNGEPLQE--TD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI  102 (785)
Q Consensus        28 ~~v~l~C~~~g--~p~~~i~W~~~~~~~~~--~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~  102 (785)
                      +++.|.|.+.+  .+++.|.|++||..|..  .. ++.... +.  ...+.|+|.+++.+|+|.|+|.|.|..+....++
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~-~~--~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a   77 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG-GQ--DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA   77 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec-cC--CCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence            57899999976  45789999999999962  22 222211 10  1113599999999999999999999999999999


Q ss_pred             eEEEe
Q psy2775         103 PVKVN  107 (785)
Q Consensus       103 ~v~v~  107 (785)
                      .|.|.
T Consensus        78 ~L~V~   82 (85)
T cd05853          78 DLIVR   82 (85)
T ss_pred             EEEEe
Confidence            99987

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.26  E-value=2.2e-11  Score=97.18  Aligned_cols=79  Identities=27%  Similarity=0.431  Sum_probs=64.1

Q ss_pred             eeeeeeeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      +..++...+.+|++++|.|.+.+ .|.|.+.|++++..+....    .  .....|.|.++.. +|+|.|.|.|.|..|.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v~~-~DsG~Y~C~a~n~~g~   77 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNVQL-SDAGTYVCTGSNMLDT   77 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCCCH-HHCEEEEEEEeccCCe
Confidence            34455778999999999999975 6888999999987654321    1  1235799999999 9999999999999999


Q ss_pred             eEEEEEE
Q psy2775         641 ATHGARV  647 (785)
Q Consensus       641 ~~~~~~l  647 (785)
                      ...++.|
T Consensus        78 ~~~~~~l   84 (85)
T cd05754          78 DEATATL   84 (85)
T ss_pred             EeEEEEE
Confidence            9887775

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.26  E-value=3.2e-11  Score=93.52  Aligned_cols=71  Identities=21%  Similarity=0.396  Sum_probs=55.8

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEcc-C--CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQ-E--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      ++|.|.+.|.|.|.|+|++++.... .  ..++.+...+      ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4799999999999999999986422 2  2233332222      35999999999999999999999999888888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.26  E-value=3.4e-11  Score=93.19  Aligned_cols=73  Identities=29%  Similarity=0.590  Sum_probs=59.6

Q ss_pred             CCcEEEEEEEeccCCCeEEEeE-CCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         128 GESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       128 G~~v~l~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+............+|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            7889999999999999999997 677665443222223457999999999999999999999999888877765

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.26  E-value=3.8e-11  Score=94.88  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCe--eEE--eeCCeEEEEEccCCCCCCceeEEEEEEcCCc--ceEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK--REI--FDGENIILELKEADSETDAGDYKVVATNELG--SATHGAR  646 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~--~~~--~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g--~~~~~~~  646 (785)
                      |++++|.|.+.|.|.|.+.|++.++........  ...  .....++|+|.+++. +|+|.|+|.|+|..+  ....++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence            789999999999999999999877643221110  111  122357899999999 999999999999887  5555555


Q ss_pred             EEE
Q psy2775         647 VTV  649 (785)
Q Consensus       647 l~V  649 (785)
                      |.|
T Consensus        80 i~V   82 (84)
T cd05861          80 ITV   82 (84)
T ss_pred             EEE
Confidence            555

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.25  E-value=4.8e-11  Score=96.17  Aligned_cols=80  Identities=16%  Similarity=0.310  Sum_probs=59.2

Q ss_pred             CCeEEEEEEEEecCCCeeEEEEC----CEEccCCCC--EEEeecCCc---cceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYN----GEPLQETDE--VVFSDQSDM---HSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~----~~~~~~~~~--~~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      |++++|.|.+.|.|.|.|+|+++    +..+.....  ..+....+.   ....++|+|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    344432222  111111110   112357999999999999999999999999


Q ss_pred             EEEEeeEEE
Q psy2775          98 AKMDIPVKV  106 (785)
Q Consensus        98 ~~~~~~v~v  106 (785)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.24  E-value=2.7e-11  Score=91.22  Aligned_cols=68  Identities=21%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEE
Q psy2775         131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL  198 (785)
Q Consensus       131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  198 (785)
                      +.|.|.+.|.|+|++.|+|||.++............+|.|.++..+|+|.|+|.|.|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            46899999999999999999999875422222223479999999999999999999987655544433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.24  E-value=4.9e-11  Score=91.91  Aligned_cols=70  Identities=19%  Similarity=0.383  Sum_probs=54.9

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccC--CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE-EEEeeEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKV  106 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v  106 (785)
                      ++|.|.+.|.|.|.|.|++++..+..  ..++...  .+     ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~-----g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--RS-----GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--CC-----cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47999999999999999999998863  3343332  11     249999999999999999999999874 45555554

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.24  E-value=6e-11  Score=94.30  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=60.1

Q ss_pred             CCeEEEEEEEEec--CCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775          27 NSEVTLEVRLVAV--PEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP  103 (785)
Q Consensus        27 G~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~  103 (785)
                      |++++|.|.+.|.  |.+.+.|++++..+....... ...........++|+|.+++.+|+|.|+|.|.|..+..+.+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            8899999999999  789999998887553221110 0011111234578999999999999999999999998888877


Q ss_pred             EEE
Q psy2775         104 VKV  106 (785)
Q Consensus       104 v~v  106 (785)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            766

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.24  E-value=1.4e-10  Score=91.61  Aligned_cols=81  Identities=16%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe--eEEEEeeE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG--EAKMDIPV  104 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~--~~~~~~~v  104 (785)
                      |++++|+|.+.|.|.+.+.|+++++....................++|+|.+++.+|+|.|.|.|.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            8999999999999999999998876432211111111111122357899999999999999999998765  45566666


Q ss_pred             EEe
Q psy2775         105 KVN  107 (785)
Q Consensus       105 ~v~  107 (785)
                      .|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.24  E-value=4.5e-11  Score=96.19  Aligned_cols=80  Identities=14%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECC----EEccCC-CCE-EEeec---CCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNG----EPLQET-DEV-VFSDQ---SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~----~~~~~~-~~~-~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      |++++|.|.+.|.|.|.|+|+|++    ..+... ... .....   ........+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999964    222211 111 11111   100111246999999999999999999999999


Q ss_pred             EEEEeeEEE
Q psy2775          98 AKMDIPVKV  106 (785)
Q Consensus        98 ~~~~~~v~v  106 (785)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.23  E-value=7.5e-11  Score=92.25  Aligned_cols=69  Identities=22%  Similarity=0.298  Sum_probs=56.3

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      +++..+..|+++.|.|.+.+ |.|+|.|++||.++..+.....+.++   .|.|.+++. +|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~---~L~I~nv~~-~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD---GLLIFNASE-ADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC---cEEEeCCCH-HHCEEEEEEEEecc
Confidence            35778999999999999865 67899999999999766433333332   499999999 99999999999863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.22  E-value=1.3e-10  Score=93.54  Aligned_cols=81  Identities=22%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEe--------cCCCCeeEEeeC-CeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIFDG-ENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i--------~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +++.+.+|+++.|.|.+.|.|.|.|.|+|++..+        ..+.++.+.... ...+|.|.++.. +|+|.|+|.|..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEEe
Confidence            4788999999999999999999999999977543        223344333322 357899999999 999999999997


Q ss_pred             CCcceEEEEEEE
Q psy2775         637 ELGSATHGARVT  648 (785)
Q Consensus       637 ~~g~~~~~~~l~  648 (785)
                      . -...+.++|.
T Consensus        84 ~-~~~~~~~~~~   94 (95)
T cd05882          84 M-PVRTAKATVT   94 (95)
T ss_pred             e-ccccEEEEEE
Confidence            2 2344444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.22  E-value=4.2e-11  Score=96.49  Aligned_cols=81  Identities=22%  Similarity=0.349  Sum_probs=63.6

Q ss_pred             CceEecCCCeEEEEEEEEe-----cCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          20 KPVYAEENSEVTLEVRLVA-----VPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      ....+.+|+.+.|.|.+.|     .|.+.|.|||++..+...  .+..+...+      ..|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~~~   80 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK------DLLWFLPAALEDSGLYTCVVR   80 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC------CeEEEccCCcccCeEEEEEEc
Confidence            5778889999999999988     688999999998764321  122222222      359999999999999999999


Q ss_pred             cCCeeEEEEeeEEE
Q psy2775          93 NREGEAKMDIPVKV  106 (785)
Q Consensus        93 ~~~~~~~~~~~v~v  106 (785)
                      |..|.....+.|.|
T Consensus        81 N~~g~~~~~~~L~v   94 (94)
T cd05756          81 NSTYCMKVSISLTV   94 (94)
T ss_pred             CCCccEEEEEEEEC
Confidence            99999888776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.22  E-value=8.9e-11  Score=94.48  Aligned_cols=72  Identities=17%  Similarity=0.254  Sum_probs=55.4

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEcc--------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ--------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      ..++.+.+|+++.|.|.+.+.|.+.|.|++++..+.        ...++.+.....   ...+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP---TELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC---ceEEEEECCCCcccCEEEEEE
Confidence            357899999999999999999999999999875431        123333222221   235799999999999999999


Q ss_pred             EEc
Q psy2775          91 AKN   93 (785)
Q Consensus        91 a~~   93 (785)
                      +..
T Consensus        81 ~~t   83 (95)
T cd05882          81 IFT   83 (95)
T ss_pred             EEe
Confidence            987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.21  E-value=6.6e-11  Score=94.55  Aligned_cols=80  Identities=15%  Similarity=0.260  Sum_probs=64.6

Q ss_pred             eeeeeecCeEEEEEEEec-----CCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         567 EKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .+.+.+|++++|.|...+     +|.|.+.||||+.++...... +.   ....|.|.++.. +|+|.|+|.|.|.+|..
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~-~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTE-EDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCCh-hhCEEEEEEEEecCCCE
Confidence            467889999999998654     357899999999998755432 22   445799999999 99999999999999988


Q ss_pred             EEEEEEEEEe
Q psy2775         642 THGARVTVDV  651 (785)
Q Consensus       642 ~~~~~l~V~~  651 (785)
                      .-+++..+.+
T Consensus        79 ~~~~t~t~~l   88 (92)
T cd05757          79 QYNVTRTISL   88 (92)
T ss_pred             EEEEEEEEEE
Confidence            7777766653

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.19  E-value=1.4e-10  Score=90.30  Aligned_cols=74  Identities=23%  Similarity=0.350  Sum_probs=60.1

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +.|.|.+.|.|.|.+.|++++..+....+..+....+.    +.|.|.+++.+|.|.|+|.|.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANG----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCC----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            47999999999999999999998876544333322221    359999999999999999999999998888888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.16  E-value=1.5e-10  Score=90.00  Aligned_cols=70  Identities=20%  Similarity=0.370  Sum_probs=55.6

Q ss_pred             EEEEEEEEe-cCCCeeEEEECCEEccCCCCEE---EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775          30 VTLEVRLVA-VPEPDLLWYYNGEPLQETDEVV---FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP  103 (785)
Q Consensus        30 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~  103 (785)
                      +.|.|.+.| .|.+.+.|++++..+....+..   +....    ..++|+|.+++.+|.|.|+|.|.|..|.+..++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKK----KNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecC----ceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            479999999 8999999999999887654432   22111    2367999999999999999999999998776653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.16  E-value=3.7e-10  Score=88.38  Aligned_cols=69  Identities=10%  Similarity=0.241  Sum_probs=56.7

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      .|.++.+.+|+++.|.|.+.+ +.+.|.|++++.++.... ++.+ ..+       .|.|.+++.+|+|.|+|.|.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~-------~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRD-------GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECC-------cEEEeCCCHHHCEEEEEEEEecc
Confidence            578899999999999999754 678999999999987663 3333 222       29999999999999999999764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.15  E-value=2.3e-10  Score=90.53  Aligned_cols=75  Identities=19%  Similarity=0.399  Sum_probs=55.7

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCE---Ec-cCCCCE--EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGE---PL-QETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~---~~-~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      |++++|.|.+.|.|.|.+.|++++.   .+ ......  .+...     ..++|+|.+++.+|+|.|+|.|.|..|....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            7899999999999999999999742   11 110000  01111     1246999999999999999999999999888


Q ss_pred             EeeEEE
Q psy2775         101 DIPVKV  106 (785)
Q Consensus       101 ~~~v~v  106 (785)
                      .+.|.|
T Consensus        76 ~~~l~v   81 (81)
T cd05765          76 NFPLSV   81 (81)
T ss_pred             EEEEeC
Confidence            877654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.15  E-value=5.1e-10  Score=88.55  Aligned_cols=83  Identities=22%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             eeeeeecCeEEEEEEEecCCCCc-eEEEeCCEEecCCCCeeEEeeC-----CeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~i~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      .+.|.+|+.+.|.|.++++|+|+ +.|.+++..+............     -.+.|.+.++.. +|+|.|+|.|.|+.+.
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~~   90 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDAS   90 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCCe
Confidence            56899999999999999999997 9999998877554442222221     347899999999 9999999999999999


Q ss_pred             eEEEEEEEEE
Q psy2775         641 ATHGARVTVD  650 (785)
Q Consensus       641 ~~~~~~l~V~  650 (785)
                      ...++.|.|+
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            9988888875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.14  E-value=4e-10  Score=91.19  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--------EccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--------PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .+.++.+.+|++++|.|.+.+.|.+.+.|++.+.        ......++...... .  ...+|+|.+++.+|+|.|.|
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~-~--~~~sL~I~~v~~~DsG~Y~C   79 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS-W--HELSISISDVSLSDEGQYTC   79 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC-C--CcEEEEECcCCcccCEEEEE
Confidence            3568999999999999999999999999986332        22233444432221 1  12569999999999999999


Q ss_pred             EEEcCC
Q psy2775          90 VAKNRE   95 (785)
Q Consensus        90 ~a~~~~   95 (785)
                      .+.+..
T Consensus        80 ~~~t~~   85 (95)
T cd07701          80 SLFTMP   85 (95)
T ss_pred             EeEeec
Confidence            999743

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.14  E-value=2.3e-10  Score=91.21  Aligned_cols=80  Identities=18%  Similarity=0.326  Sum_probs=64.4

Q ss_pred             eeecCCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      ....|+.+.+.+|++++|.|.+.+ .|.+.+.|++++..+....    ..      ..+.|.|.+++.+|+|.|+|.|.|
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~------~~~~L~I~~v~~~DsG~Y~C~a~n   73 (85)
T cd05754           4 TVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MD------FNGILTIRNVQLSDAGTYVCTGSN   73 (85)
T ss_pred             EecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cc------cCCEEEECCCCHHHCEEEEEEEec
Confidence            456788999999999999999964 6888999999987653321    11      114599999999999999999999


Q ss_pred             CCeeEEEEeeE
Q psy2775          94 REGEAKMDIPV  104 (785)
Q Consensus        94 ~~~~~~~~~~v  104 (785)
                      ..|.....+.|
T Consensus        74 ~~g~~~~~~~l   84 (85)
T cd05754          74 MLDTDEATATL   84 (85)
T ss_pred             cCCeEeEEEEE
Confidence            99988877654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.14  E-value=2.1e-10  Score=92.38  Aligned_cols=81  Identities=21%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC--CeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC-cceE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVATNEL-GSAT  642 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~-g~~~  642 (785)
                      ..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+....  .......  ...|.|.++.. +|+|.|.|.|.|.. +...
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~-~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSP-ADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCH-HHCEEEEEEEecCccceeE
Confidence            3567899999999999987 888999999998776542  1112221  22499999999 99999999999765 4445


Q ss_pred             EEEEEEEE
Q psy2775         643 HGARVTVD  650 (785)
Q Consensus       643 ~~~~l~V~  650 (785)
                      .+.+|.|.
T Consensus        80 ~~~~l~V~   87 (89)
T cd04979          80 ATYSLNVL   87 (89)
T ss_pred             eEEEEEEe
Confidence            55555553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.12  E-value=1.1e-10  Score=92.48  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             eeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEe--cCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         566 EEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPL--LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i--~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      +...+.+|+.+.|.|.. .|+|.|.|.|++++.++  ..+.+.  +.....+.|.|.+++. +|+|.|+|.|+|.....
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~~~G~L~fs~v~~-~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQTNGNLYIAKVEA-SDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeCCCCcEEEeecCH-hhCceeEEEEEecccCC
Confidence            46689999999999975 68899999999998764  223332  2333456799999999 99999999999987644

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.11  E-value=9.8e-10  Score=88.05  Aligned_cols=83  Identities=19%  Similarity=0.327  Sum_probs=65.1

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++++..+............   .....|.|.+++.+|.|.|.|.+.|..|....
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVR---KKKWTLILESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEcc---CcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence            467789999999999999999999999999887654433322111   12246999999999999999999999998777


Q ss_pred             EeeEEE
Q psy2775         101 DIPVKV  106 (785)
Q Consensus       101 ~~~v~v  106 (785)
                      ++.|+|
T Consensus        80 ~~~l~v   85 (85)
T cd05729          80 TYKVDV   85 (85)
T ss_pred             EEEEeC
Confidence            776653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.09  E-value=6.7e-10  Score=89.40  Aligned_cols=83  Identities=23%  Similarity=0.339  Sum_probs=62.7

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      +|..+.+.+|+++.|.|.+.+ |.+.+.|++++..+....  ...+....      ..|.|.+++.+|+|.|+|.|.+..
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~   74 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE------DGLLIRSVSPADAGVYTCQSVEHG   74 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC------CCEEEccCCHHHCEEEEEEEecCc
Confidence            467889999999999999876 788999999998765542  11222211      238999999999999999998654


Q ss_pred             -eeEEEEeeEEEe
Q psy2775          96 -GEAKMDIPVKVN  107 (785)
Q Consensus        96 -~~~~~~~~v~v~  107 (785)
                       +....++.|.|.
T Consensus        75 ~~~~~~~~~l~V~   87 (89)
T cd04979          75 FKQTLATYSLNVL   87 (89)
T ss_pred             cceeEeEEEEEEe
Confidence             445566777764

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.08  E-value=4.1e-10  Score=87.45  Aligned_cols=65  Identities=23%  Similarity=0.403  Sum_probs=49.9

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCC----CCCeEEEEEEEcCCeeEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKK----REEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~~~~~~~~~  100 (785)
                      ++|.|.+.|.|.|.|+|++++..+....  ++.+....      ++|.|.+++.    +|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~------g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDS------GTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCC------CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            5799999999999999999999875432  33322221      3588888754    7999999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.08  E-value=3.8e-10  Score=87.71  Aligned_cols=70  Identities=16%  Similarity=0.367  Sum_probs=52.7

Q ss_pred             EEEEEEEEe-cCCCeeEEEECCEEccCCC----CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775          30 VTLEVRLVA-VPEPDLLWYYNGEPLQETD----EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP  103 (785)
Q Consensus        30 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~  103 (785)
                      +.|.|.+.+ .|.+.+.|++++..+....    ++.+...    ...+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK----KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            479999864 5778999999998885432    1222221    12356999999999999999999999998776653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.08  E-value=7.1e-10  Score=85.85  Aligned_cols=66  Identities=23%  Similarity=0.455  Sum_probs=48.8

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCC----CCCeEEEEEEEcCCeeEEEE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKK----REEGVYTVVAKNREGEAKMD  101 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~~~~~~~~~~  101 (785)
                      +.|.|.+.|.|.|.|+|++++..+....  ++.+...+      ++|.|..+..    .|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNT------GTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCC------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            5799999999999999999999874332  23222222      3477777654    47899999999999976553

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.07  E-value=8.2e-10  Score=85.47  Aligned_cols=65  Identities=22%  Similarity=0.456  Sum_probs=50.0

Q ss_pred             EEEEEEEeccCCCeEEEeECCEEccc---ceEEEeCCEEEEEEcccC----CCCcEEEEEEEEcCCeeEEEE
Q psy2775         131 AVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCS----TKDKGRYSVKVTNKEGTVESA  195 (785)
Q Consensus       131 v~l~C~~~g~p~~~v~W~~~g~~~~~---~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~a~n~~g~~~~~  195 (785)
                      +.|.|.+.|+|.|.|+|+|+|..+..   ..+.......+|.|..+.    .+|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            47999999999999999999987632   223333345678888764    257999999999999976554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.07  E-value=5.4e-10  Score=89.17  Aligned_cols=73  Identities=15%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEe-c-------------CCCCeeEEe---eCCeEEEEEccCCCCCCceeE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-L-------------SSPKKREIF---DGENIILELKEADSETDAGDY  630 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i-~-------------~~~~~~~~~---~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      +.+.+|++|+|.|.+.+.|.+.+.|++++... .             ...+.....   ..+.+.|+|.++.. +|+|+|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEE
Confidence            35789999999999999999999999876332 1             112222222   44567899999999 999999


Q ss_pred             EEEEEcCCcce
Q psy2775         631 KVVATNELGSA  641 (785)
Q Consensus       631 ~C~a~n~~g~~  641 (785)
                      .|.+.|..++.
T Consensus        81 ~C~v~~~~~~~   91 (94)
T cd07690          81 ICEVEDKKEEV   91 (94)
T ss_pred             EEEECCccceE
Confidence            99999988754

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.06  E-value=4.8e-10  Score=88.17  Aligned_cols=67  Identities=19%  Similarity=0.221  Sum_probs=54.8

Q ss_pred             eeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceE
Q psy2775         567 EKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~  642 (785)
                      ...+.+|++++|.|.+.+ .|.+.+.|||+|..+...        .....|.|.+++. +|+|.|+|.|.|..|...
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATL-SDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCH-HHCEEEEEEEEeCCceec
Confidence            447899999999999864 567789999999876421        2345799999999 999999999999998543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.05  E-value=3.1e-09  Score=84.18  Aligned_cols=89  Identities=25%  Similarity=0.468  Sum_probs=72.9

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      -..+.|.+|+++.|.|.+.+.|+|. +.|.+++..+.......+.... ...++.+.|++..++.+|+|.|+|.|.|...
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            3568999999999999999999997 9999998876554442232222 3355889999999999999999999999999


Q ss_pred             eEEEEeeEEEe
Q psy2775          97 EAKMDIPVKVN  107 (785)
Q Consensus        97 ~~~~~~~v~v~  107 (785)
                      ..+..+.|.|.
T Consensus        90 ~~s~tF~l~v~  100 (101)
T cd05860          90 SASVTFNVYVN  100 (101)
T ss_pred             eEEEEEEEEEe
Confidence            88888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.04  E-value=9.8e-10  Score=87.10  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             cCeEEEEEEEecCCCC--ceEEEeCCEEecCC---CCeeE-E--eeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         573 KGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKRE-I--FDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~---~~~~~-~--~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      |++++|.|.+.|.|.+  .+.|.+.+......   ..... .  .....++|.|.+++. +|+|.|+|.|+|..|....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecceEeccc
Confidence            7899999999987655  78998877643211   10000 1  123457899999999 99999999999999999999


Q ss_pred             EEEEEE
Q psy2775         645 ARVTVD  650 (785)
Q Consensus       645 ~~l~V~  650 (785)
                      +.|.|+
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            998886

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.04  E-value=7.8e-10  Score=82.70  Aligned_cols=63  Identities=29%  Similarity=0.595  Sum_probs=52.4

Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      +|++++|.|.+.+.|.+.+.|++++..+. . .  .........|.|.++.. +|+|.|+|.|.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~--~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-S--NRLSASGSTLTIKSVSL-EDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-C-C--CEEecCCcEEEEeeCCc-ccCEEEEEEEecCCC
Confidence            48899999999999999999999998886 1 1  12233455799999999 999999999999875

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.03  E-value=9.4e-10  Score=86.20  Aligned_cols=68  Identities=18%  Similarity=0.300  Sum_probs=49.5

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEcc--------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE-EE
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQ--------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA-KM  100 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~-~~  100 (785)
                      |+|.|.+.|.|.|.+.|++++....        ...++....       ..+|.|.+++.+|+|.|+|.|.|..|.+ +.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~   73 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-------NGSLLIKHVLEEDSGYYLCKVSNDVGADASK   73 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec-------CCeEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence            5799999999999999999753221        122222211       1459999999999999999999999876 33


Q ss_pred             EeeE
Q psy2775         101 DIPV  104 (785)
Q Consensus       101 ~~~v  104 (785)
                      .+.|
T Consensus        74 ~~~l   77 (79)
T cd05734          74 SMVL   77 (79)
T ss_pred             EEEE
Confidence            4444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.02  E-value=2.1e-09  Score=87.69  Aligned_cols=82  Identities=24%  Similarity=0.330  Sum_probs=60.1

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEe--------cCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i--------~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      ++..+.+|++++|.|.+.+.|.+.+.|++.+..+        ..+.++.... .+..+.|+|.+++. +|+|.|+|.+.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~   83 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLYT   83 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEec
Confidence            4678999999999999999999999998632211        1223444422 23457899999999 999999999998


Q ss_pred             CCcceEEEEEEEE
Q psy2775         637 ELGSATHGARVTV  649 (785)
Q Consensus       637 ~~g~~~~~~~l~V  649 (785)
                      ... .+.++.|.|
T Consensus        84 ~~~-~~~~~~~~v   95 (95)
T cd05717          84 MPV-QTAKATVTV   95 (95)
T ss_pred             CCC-ceEEEEEEC
Confidence            753 455566554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00410 IG_like Immunoglobulin like

Probab=99.01  E-value=5.1e-09  Score=84.02  Aligned_cols=82  Identities=33%  Similarity=0.515  Sum_probs=69.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeC-CEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      ...+..|++++|.|.+.+.+.+.+.|+++ +..+....+...........|.|.++.. +|+|.|.|.+.+..|.....+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence            45678999999999999998889999998 8888755566555555567899999999 999999999999998887776


Q ss_pred             EEEE
Q psy2775         646 RVTV  649 (785)
Q Consensus       646 ~l~V  649 (785)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            6665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.01  E-value=5.1e-09  Score=84.02  Aligned_cols=82  Identities=33%  Similarity=0.515  Sum_probs=69.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeC-CEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      ...+..|++++|.|.+.+.+.+.+.|+++ +..+....+...........|.|.++.. +|+|.|.|.+.+..|.....+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence            45678999999999999998889999998 8888755566555555567899999999 999999999999998887776


Q ss_pred             EEEE
Q psy2775         646 RVTV  649 (785)
Q Consensus       646 ~l~V  649 (785)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            6665

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.01  E-value=1.7e-09  Score=85.56  Aligned_cols=70  Identities=29%  Similarity=0.597  Sum_probs=55.4

Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc-ceEEEEE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG-SATHGAR  646 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g-~~~~~~~  646 (785)
                      ..+.+|+.++|.|.+.|.|.+.+.|++++..+..+..        .  |.+.++.. +|+|.|+|.|.|..| ....+++
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------~--~~~~~~~~-~~~g~y~C~~~~~~~~~~s~~~~   77 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------G--LFIPNVSP-EDSGNYTCRASNGSGSNTSTSVN   77 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------E--EEESSEEG-GGTEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------e--eeeeeecc-ccCEEEEEEEEeCCCCeEeeeEE
Confidence            6789999999999999999999999999988763322        1  77788888 999999999999765 2333444


Q ss_pred             EE
Q psy2775         647 VT  648 (785)
Q Consensus       647 l~  648 (785)
                      |.
T Consensus        78 v~   79 (80)
T PF13895_consen   78 VT   79 (80)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

...

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.01  E-value=6.9e-10  Score=87.86  Aligned_cols=73  Identities=19%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             eeeeeeeecCeEEEEEE-EecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCce-eEEEEEEcCCcc
Q psy2775         565 FEEKTVKEKGTIRLMAK-VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG-DYKVVATNELGS  640 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~a~n~~g~  640 (785)
                      ++.+.|.+|+++.|.|. ..|+|.|.|.|++++......++ ++ .-+..+.|.|.+++. +|+| .|.|.|.|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~-Ri-~~~~~GnL~fs~v~~-~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDE-RV-SMGQNGNLYFANVEE-QDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccc-cE-EECCCceEEEEEEeh-hhCCCCeEEEEEccccc
Confidence            46789999999999997 69999999999988765433322 22 223346799999999 9999 799999998643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.00  E-value=1.7e-09  Score=86.02  Aligned_cols=73  Identities=12%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             eeeeeecCeEEEEEE-EecC----CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         567 EKTVKEKGTIRLMAK-VKAS----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~-~~g~----P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .+.+.+|....|.|. .+++    +.|.|+||||++++..+......+.+ ...|.|.++.. +|+|.|+|.|.|.+|..
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v~~-~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDVSL-NDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEcCh-hhCEEEEEEEEEeeCCE
Confidence            456788999999996 3444    66799999999998765543333233 34599999999 99999999999998765

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.99  E-value=3.2e-09  Score=84.16  Aligned_cols=80  Identities=24%  Similarity=0.240  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEEecC--CCeeEEEECCEEccCC---CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEE
Q psy2775          27 NSEVTLEVRLVAVP--EPDLLWYYNGEPLQET---DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD  101 (785)
Q Consensus        27 G~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~  101 (785)
                      |++++|.|.+.+.+  ...+.|.+++......   ....... .......++|+|.+++.+|+|.|+|.|.|..+.....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence            88999999998765  4578999887643211   1100000 1112345789999999999999999999999888888


Q ss_pred             eeEEEe
Q psy2775         102 IPVKVN  107 (785)
Q Consensus       102 ~~v~v~  107 (785)
                      ..|.|+
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            888775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.98  E-value=2.7e-09  Score=85.42  Aligned_cols=78  Identities=19%  Similarity=0.182  Sum_probs=57.1

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCE--Ee----cCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE-cCCc
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PL----LSSPKKREIFDGENIILELKEADSETDAGDYKVVAT-NELG  639 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~i----~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~-n~~g  639 (785)
                      .+.+.+|++++|.|.. +.|.|.+.|||.+.  ..    ..+.+.  ...  ...|.|.++.. +|+|.|+|.|. |..|
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~--~~~--~~~L~I~~~~~-~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERL--IHT--ERGLLLRSLQR-SDAGVYTCTAVEHSFS   78 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccE--EEe--cCeEEEeeCCh-hHCEEEEEEEEccCCe
Confidence            4568899999999996 58999999998432  21    112222  122  23499999999 99999999998 6777


Q ss_pred             ceEEEEEEEEE
Q psy2775         640 SATHGARVTVD  650 (785)
Q Consensus       640 ~~~~~~~l~V~  650 (785)
                      .....++|.|.
T Consensus        79 ~~~~~~~l~v~   89 (91)
T cd05871          79 QTLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEEe
Confidence            77777777764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.96  E-value=1.6e-09  Score=85.97  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             cCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEc--cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775          18 KTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      ..+.+.+.+|+.+.|.|.. .|.|.+.|.|++++.++  ....+..+...+      +.|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~------G~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727           9 ERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTN------GNLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             CcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCC------CcEEEeecCHhhCceeEEEEEec
Confidence            3456889999999999987 67799999999998754  223333333222      24999999999999999999997


Q ss_pred             Cee
Q psy2775          95 EGE   97 (785)
Q Consensus        95 ~~~   97 (785)
                      ...
T Consensus        83 ~~~   85 (96)
T cd05727          83 SST   85 (96)
T ss_pred             ccC
Confidence            643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.95  E-value=3.7e-09  Score=84.36  Aligned_cols=76  Identities=12%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             eEecCCCeEEEEEEEEecCCCeeEEEECCEEc-cC-------------CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL-QE-------------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        22 ~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +.+.+|++|+|+|.+++.+.+.+.|++++... ..             .+++..... ........|+|.+++.+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEE
Confidence            57889999999999998888999999876332 11             111111110 1112335699999999999999


Q ss_pred             EEEEEcCCeeE
Q psy2775          88 TVVAKNREGEA   98 (785)
Q Consensus        88 ~C~a~~~~~~~   98 (785)
                      .|.+.|..+..
T Consensus        81 ~C~v~~~~~~~   91 (94)
T cd07690          81 ICEVEDKKEEV   91 (94)
T ss_pred             EEEECCccceE
Confidence            99999876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.95  E-value=5.7e-09  Score=82.45  Aligned_cols=78  Identities=29%  Similarity=0.550  Sum_probs=59.9

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+..++  ..+.+|++++|.|.+.+.|.+.+.|++++..+..+...              |.|.+++.+|.|.|+|.+.
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~--------------~~~~~~~~~~~g~y~C~~~   65 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNG--------------LFIPNVSPEDSGNYTCRAS   65 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSE--------------EEESSEEGGGTEEEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeee--------------eeeeeeccccCEEEEEEEE
Confidence            6677665  66899999999999999888999999998777632211              6678899999999999999


Q ss_pred             cCCe-eEEEEeeEEE
Q psy2775          93 NREG-EAKMDIPVKV  106 (785)
Q Consensus        93 ~~~~-~~~~~~~v~v  106 (785)
                      +..+ ..+..+.|.|
T Consensus        66 ~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   66 NGSGSNTSTSVNVTV   80 (80)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCCeEeeeEEeeC
Confidence            8665 3444455543

...

>smart00410 IG_like Immunoglobulin like

Probab=98.94  E-value=2.2e-08  Score=80.28  Aligned_cols=84  Identities=29%  Similarity=0.493  Sum_probs=68.1

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEEC-CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYN-GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      |..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++.......    ...|.|.+++.+|+|.|.|.+.+..+.
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            4567889999999999998887889999998 88777566666555443    356999999999999999999988877


Q ss_pred             EEEEeeEEE
Q psy2775          98 AKMDIPVKV  106 (785)
Q Consensus        98 ~~~~~~v~v  106 (785)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00410       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            666666654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.94  E-value=2.2e-08  Score=80.28  Aligned_cols=84  Identities=29%  Similarity=0.493  Sum_probs=68.1

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEEC-CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYN-GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      |..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++.......    ...|.|.+++.+|+|.|.|.+.+..+.
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            4567889999999999998887889999998 88777566666555443    356999999999999999999988877


Q ss_pred             EEEEeeEEE
Q psy2775          98 AKMDIPVKV  106 (785)
Q Consensus        98 ~~~~~~v~v  106 (785)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00409       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            666666654

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.94  E-value=3.6e-09  Score=84.58  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=60.7

Q ss_pred             ceEeccCCcEEEEEEEec-----cCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE
Q psy2775         122 DVSITEGESAVLSVQVGG-----EPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  196 (785)
Q Consensus       122 ~~~~~~G~~v~l~C~~~g-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  196 (785)
                      .+.+.+|....|.|...+     +|.+.+.||||+.++........ ....|.|.++..+|+|.|+|.|.|..+.....+
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~   82 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNV   82 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEE
Confidence            346778999999998643     25779999999999876543332 445899999999999999999999887766655


Q ss_pred             EEEe
Q psy2775         197 NLNV  200 (785)
Q Consensus       197 ~l~V  200 (785)
                      +..+
T Consensus        83 t~t~   86 (92)
T cd05757          83 TRTI   86 (92)
T ss_pred             EEEE
Confidence            4444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.93  E-value=3.4e-09  Score=83.35  Aligned_cols=67  Identities=27%  Similarity=0.334  Sum_probs=54.0

Q ss_pred             ceEeccCCcEEEEEEEec-cCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE
Q psy2775         122 DVSITEGESAVLSVQVGG-EPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE  193 (785)
Q Consensus       122 ~~~~~~G~~v~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  193 (785)
                      ...+.+|++++|+|.+.+ .+...+.|+|+|..+..     ......|.|.+++.+|+|.|+|.+.+..+...
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            346889999999999854 55668999999987642     22345799999999999999999999887543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.93  E-value=1.9e-09  Score=85.41  Aligned_cols=78  Identities=15%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             CCeeeec-CCceEecCCCeEEEEEE-EEecCCCeeEEEECCEE-ccCCCCEEEeecCCccceEEEEEEcccCCCCCe-EE
Q psy2775          12 PPTFSKK-TKPVYAEENSEVTLEVR-LVAVPEPDLLWYYNGEP-LQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG-VY   87 (785)
Q Consensus        12 ~p~~~~~-~~~~~v~~G~~v~l~C~-~~g~p~~~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y   87 (785)
                      .|+|... .+.+.|.+|+.+.|.|. ..|.|.|.|.|++++.. +....|+.+..+       +.|.|.+++.+|+| .|
T Consensus         2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-------GnL~fs~v~~~D~g~~Y   74 (95)
T cd05845           2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN-------GNLYFANVEEQDSHPDY   74 (95)
T ss_pred             CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC-------ceEEEEEEehhhCCCCe
Confidence            4667655 57899999999999998 58999999999987654 333344433322       34999999999999 89


Q ss_pred             EEEEEcCCe
Q psy2775          88 TVVAKNREG   96 (785)
Q Consensus        88 ~C~a~~~~~   96 (785)
                      .|.|.|...
T Consensus        75 ~C~a~~~~~   83 (95)
T cd05845          75 ICHAHFPGL   83 (95)
T ss_pred             EEEEEcccc
Confidence            999998763

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.92  E-value=1.2e-08  Score=83.16  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEc--------cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      ++.+.+.+|++++|.|.+.+.+.+.+.|++.+..+        ....++......+   ....|+|.+++.+|+|.|+|.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA---NELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC---CeeEEEEccCCcccCEEEEEE
Confidence            56789999999999999988888899998633211        1123443322111   124699999999999999999


Q ss_pred             EEcCCeeEEEEeeEE
Q psy2775          91 AKNREGEAKMDIPVK  105 (785)
Q Consensus        91 a~~~~~~~~~~~~v~  105 (785)
                      +.+... ....+.|.
T Consensus        81 ~~~~~~-~~~~~~~~   94 (95)
T cd05717          81 LYTMPV-QTAKATVT   94 (95)
T ss_pred             EecCCC-ceEEEEEE
Confidence            997643 23444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.92  E-value=9.5e-09  Score=82.22  Aligned_cols=79  Identities=20%  Similarity=0.370  Sum_probs=56.7

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEEECCE--Ec----cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE-
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--PL----QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK-   92 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~-   92 (785)
                      ..+.+.+|+++.|.|.. +.|.+.+.||+++.  ..    ....+....        ...|.|.+++.+|+|.|+|.|. 
T Consensus         4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--------~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--------ERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--------cCeEEEeeCChhHCEEEEEEEEc
Confidence            45778999999999996 57889999998432  11    112222221        1349999999999999999998 


Q ss_pred             cCCeeEEEEeeEEEe
Q psy2775          93 NREGEAKMDIPVKVN  107 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~  107 (785)
                      +..+.....+.|.|.
T Consensus        75 ~~~~~~~~~~~l~v~   89 (91)
T cd05871          75 HSFSQTLAKYTLHVI   89 (91)
T ss_pred             cCCeEEEEEEEEEEe
Confidence            455556666667664

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.91  E-value=7.2e-09  Score=81.86  Aligned_cols=74  Identities=23%  Similarity=0.432  Sum_probs=53.0

Q ss_pred             eEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEee-CC----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775         575 TIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFD-GE----NIILELKEADSETDAGDYKVVATNELGSATHGARVT  648 (785)
Q Consensus       575 ~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~-~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  648 (785)
                      +++|.|.+.| +|.+.|+|+|+|+++........... +.    .+.|.|..... +|.|.|+|.|.|..........+.
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH-DTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee-cCCCEEEEEEcCccCCCCcEEEEE
Confidence            3689999987 59899999999998865432222222 22    24688887766 788999999999886655555554


Q ss_pred             E
Q psy2775         649 V  649 (785)
Q Consensus       649 V  649 (785)
                      +
T Consensus        80 l   80 (82)
T cd05759          80 L   80 (82)
T ss_pred             E
Confidence            4

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.89  E-value=6.5e-09  Score=79.32  Aligned_cols=64  Identities=16%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             eEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeEEeeC----CeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         575 TIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       575 ~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .++|+|.+. |+|++.|+||||+++|.....  ....+    ..++|.|..... +|.+.|+|+|.|..+..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhCC
Confidence            378999985 569999999999999965321  11122    234689988887 99999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.86  E-value=3.3e-08  Score=78.84  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=56.6

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEe--------cCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i--------~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +++++.+|++++|+|.+.+.....+.|++-+..+        ..++|+.... ++...+|+|.+++. +|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEEc
Confidence            4778999999999999999877778888765432        3455665554 46778999999999 999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.85  E-value=1.2e-08  Score=76.25  Aligned_cols=63  Identities=33%  Similarity=0.620  Sum_probs=52.1

Q ss_pred             cCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       127 ~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      +|+.+.|.|.+.+.+.+.+.|++++..+.. ..........|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC-CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            488999999988888899999999988773 223334456899999999999999999988754

>PHA03376 BARF1; Provisional

Probab=98.85  E-value=7.5e-08  Score=83.32  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=53.8

Q ss_pred             eeeeeecCeEEEEEEEec---CCCCceEEEeCC----EEe-------------cCCCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKA---SPAPSIVWFRNN----KPL-------------LSSPKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g---~P~p~v~W~~~~----~~i-------------~~~~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                      .+.+..|+.+.|.|...-   .+...|.|+|.+    ..+             ....++.++.+.++.+|.|.+++. +|
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~l-SD   98 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI-SH   98 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeee-cC
Confidence            557789999999998652   245589999942    211             111223444557889999999999 99


Q ss_pred             ceeEEEEEEcCCcceEE
Q psy2775         627 AGDYKVVATNELGSATH  643 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~  643 (785)
                      .|.|+|...-......+
T Consensus        99 dGtY~C~fQkge~~~~k  115 (221)
T PHA03376         99 DGNYLCRMKLGETEVTK  115 (221)
T ss_pred             CceEEEEEEcCCCceee
Confidence            99999999875544433

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.83  E-value=8.7e-09  Score=77.07  Aligned_cols=63  Identities=30%  Similarity=0.422  Sum_probs=48.1

Q ss_pred             CCeEEEEEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          27 NSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        27 G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      |++++|.|.+ .+.+...+.|++++..+...............  ...|+|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSS--TSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEE--EEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeeccccee--eeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 77788899999999766554443333333221  124999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.82  E-value=2.3e-08  Score=76.38  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             EEEEEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          30 VTLEVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        30 v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      ++|+|.. .|+|++.|.||+++.+|.....  ....+...+..++|+|.....+|++.|+|+|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            7899998 5669999999999999965321  1123333345578999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.82  E-value=7.4e-09  Score=77.45  Aligned_cols=61  Identities=18%  Similarity=0.405  Sum_probs=46.0

Q ss_pred             cCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeE--EEEEccCCCCCCceeEEEEE
Q psy2775         573 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENI--ILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       573 g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      |++++|.|.+ .+.|.+.+.|+|++..............+...  +|.|.+++. +|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence            7899999999 77778899999998766443322222222211  399999999 9999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.81  E-value=2.8e-08  Score=77.12  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=60.4

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC-Cee
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR-EGE   97 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~-~~~   97 (785)
                      ...+.|.+|+++.|.|...+ +...+.|++++..+....++.....+        |.|.+++.+|+|.|.|.+... ...
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G--------LlI~~~~~~dsG~Y~C~s~E~gf~~   73 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG--------LLILVTSPEHSGTYRCYSEEEGFQQ   73 (85)
T ss_pred             ceEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC--------CEEEECCHhhCEEEEEEEecCCCeE
Confidence            35789999999999999865 46689999999998766665554444        889999999999999999833 223


Q ss_pred             EEEEeeEEE
Q psy2775          98 AKMDIPVKV  106 (785)
Q Consensus        98 ~~~~~~v~v  106 (785)
                      ....+.|.|
T Consensus        74 ~~~~y~l~v   82 (85)
T cd05872          74 LVASYSLNV   82 (85)
T ss_pred             EEEEEEEEE
Confidence            344455554

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.78  E-value=3.4e-08  Score=76.66  Aligned_cols=78  Identities=19%  Similarity=0.353  Sum_probs=65.4

Q ss_pred             CCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcceeEEEEE
Q psy2775         423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLT  502 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l~  502 (785)
                      ....+..|+.+.|.|...+..+.+.|++++..+....++....+|    |.|..++..|+|.|.|.+...|-...-+.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~   79 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEEEGFQQLVASYS   79 (85)
T ss_pred             eEEEEecCCCEEEECCCCCCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence            456788999999999999998899999999998777777766666    8899999999999999998766666555555


Q ss_pred             EE
Q psy2775         503 VE  504 (785)
Q Consensus       503 V~  504 (785)
                      +.
T Consensus        80 l~   81 (85)
T cd05872          80 LN   81 (85)
T ss_pred             EE
Confidence            54

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.77  E-value=4.9e-08  Score=77.61  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             eeeeeeecCeEEEEEEEe------cC-----CCCceEEEeCCEEecCCCC-----eeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         566 EEKTVKEKGTIRLMAKVK------AS-----PAPSIVWFRNNKPLLSSPK-----KREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~------g~-----P~p~v~W~~~~~~i~~~~~-----~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      +...+.+||++.|.|...      ++     +...+.|+|++..+.....     .++...+  ..|.|.++.. +|+|.
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~-eDSG~   84 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAEL-QDSGL   84 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCCh-hhCeE
Confidence            356789999999999861      11     2337999999765544331     1233333  3499999999 99999


Q ss_pred             EEEEEEcCCcceEEEEEEEE
Q psy2775         630 YKVVATNELGSATHGARVTV  649 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+|++.|.......++.|.|
T Consensus        85 Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          85 YTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEEECCCCcceEEEEEEEC
Confidence            99999999888777776654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA03376 BARF1; Provisional

Probab=98.74  E-value=9e-08  Score=82.82  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             ceEecCCCeEEEEEEEEe---cCCCeeEEEECC----EEc-------------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          21 PVYAEENSEVTLEVRLVA---VPEPDLLWYYNG----EPL-------------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g---~p~~~i~W~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      .+.+..|+++.|+|.-..   .+...|.|+|.+    ..+             ....+..+..+.    ..-+|.|.+++
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~----gnvsLvI~~l~   95 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA----NTFFLVVTAAN   95 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC----CeEEEEEEeee
Confidence            788899999999998742   245689999942    211             011112222222    22469999999


Q ss_pred             CCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECC
Q psy2775          81 KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG  151 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g  151 (785)
                      .+|.|.|+|.+..........-.|.+.    .|..+...........-+...+.|...|+|.|.++|+-+.
T Consensus        96 lSDdGtY~C~fQkge~~~~k~ehLt~V----~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~  162 (221)
T PHA03376         96 ISHDGNYLCRMKLGETEVTKQEHLSVV----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE  162 (221)
T ss_pred             ecCCceEEEEEEcCCCceeeeeeeeee----ecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence            999999999998654433222222222    1111111110011111456789999888999999999754

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.71  E-value=2.3e-07  Score=74.02  Aligned_cols=79  Identities=18%  Similarity=0.322  Sum_probs=58.9

Q ss_pred             CCeEEecCCcEEEEEEEeC-CCceEEEEECCEEc--------ccCCCEEEEE-eCcEEEEEEccCCCCCcEEEEEEEeec
Q psy2775         423 QDVKVSRDEKASFEIELTK-GDALVKWYKDGKEI--------AFSENVTLSI-DGKKQKLIIFSAGLEDAGEYSCRVGDT  492 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~  492 (785)
                      .++.+.+|++++|.|.+.+ +...+.|++-+..+        ....++.... ++...+|+|.+++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            5678899999999999998 45668888765332        2445666655 466788999999999999999999874


Q ss_pred             CcceeEEEE
Q psy2775         493 GDKESKATL  501 (785)
Q Consensus       493 g~~~~~~~l  501 (785)
                      ......+.+
T Consensus        85 p~~~~~~~~   93 (95)
T cd05881          85 PPQEAYTTI   93 (95)
T ss_pred             cCeEEEEEE
Confidence            333333333

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.70  E-value=8.2e-08  Score=80.90  Aligned_cols=78  Identities=15%  Similarity=0.218  Sum_probs=57.7

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEE------c--------cCCCCEEEeecCCccceEEEEEEcccCC
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEP------L--------QETDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      ...|..+.+.+|++|+|.|.+.+.+...+.||+....      +        ....++.+.....  .....|+|.+++.
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~~~~   79 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS--RKSSSLHISAAQL   79 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc--CCEEEEEECCCCH
Confidence            4567889999999999999998777789999985421      0        1223444433322  1335699999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy2775          82 REEGVYTVVAKNRE   95 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~   95 (785)
                      +|+|.|.|.+.+..
T Consensus        80 ~DsG~Y~C~~~~~~   93 (109)
T cd04983          80 SDSAVYFCALSESG   93 (109)
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.68  E-value=7.3e-08  Score=76.74  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=54.3

Q ss_pred             ceEecCCCeEEEEEEE-Ee----cCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          21 PVYAEENSEVTLEVRL-VA----VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~-~g----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      .+.+.+|.+..|.|.- .+    .+.+.++|||++.++...........++     +.|.|.++..+|+|.|+|++.+..
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~-----~~L~I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGS-----TYLHIIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCC-----CEEEEEEcChhhCEEEEEEEEEee
Confidence            4678899999999962 22    3567999999999887544322221221     249999999999999999999986


Q ss_pred             eeE
Q psy2775          96 GEA   98 (785)
Q Consensus        96 ~~~   98 (785)
                      +..
T Consensus        79 ~g~   81 (95)
T cd05897          79 EGK   81 (95)
T ss_pred             CCE
Confidence            544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.67  E-value=1.5e-07  Score=74.33  Aligned_cols=71  Identities=18%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             eEEEEEEEEe-cCCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEE
Q psy2775          29 EVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK   99 (785)
Q Consensus        29 ~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~   99 (785)
                      .+.|+|.+.| .|.+.|+|++++..+....... ....+......+.|.|.....+|.|.|+|.|.|......
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~   73 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG   73 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence            3689999987 5888999999999886432211 112233333456799998888899999999998765433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.67  E-value=1.1e-07  Score=75.55  Aligned_cols=81  Identities=20%  Similarity=0.320  Sum_probs=57.9

Q ss_pred             CceEecCCCeEEEEEEE-E----------ecCCCeeEEEECCEEccCCCCE-----EEeecCCccceEEEEEEcccCCCC
Q psy2775          20 KPVYAEENSEVTLEVRL-V----------AVPEPDLLWYYNGEPLQETDEV-----VFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~-~----------g~p~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      ....+.+|+.+.|.|.. .          ......+.|+|++..+......     ++...+      ..|.|.++..+|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~------~~Lwf~Pa~~eD   81 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE------DSIWFRPAELQD   81 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC------CEEEEEeCChhh
Confidence            45788999999999996 1          1123479999997555443321     222222      359999999999


Q ss_pred             CeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          84 EGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        84 ~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      +|.|+|++.|........+.|+|
T Consensus        82 SG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          82 SGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             CeEEEEEECCCCcceEEEEEEEC
Confidence            99999999998877766665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.63  E-value=3.8e-08  Score=76.52  Aligned_cols=73  Identities=21%  Similarity=0.409  Sum_probs=50.3

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCC-CCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      |.+...........+. ++|.|.+.+.| .+.++|+ +.....  ............+|.|.++.. +|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~-~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTR-SDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCG-GGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCH-HhCcEEEEEEEC
Confidence            5555555444444444 99999999997 7799999 111111  011222344567899999999 999999999987

...

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.61  E-value=1.2e-07  Score=76.37  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=55.3

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      |.+...+ ...|..|+.|+|.|... .|...+.|+|+|......   .....+....|.|.+++. +|+|.|+|.+.|.
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKR-EHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCCh-hHCEEEEEEEECC
Confidence            4444433 35788999999999886 677789999998764321   111234566799999999 9999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.59  E-value=7.6e-08  Score=74.80  Aligned_cols=74  Identities=31%  Similarity=0.519  Sum_probs=53.5

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecC-CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      +|.|...+.......+. ++|.|.+.+.+ .+.+.|+ +....      ............++|.|.++..+|.|.|+|.
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~   72 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS------FNSNSRGSSSSNSTLTISNVTRSDNGTYTCI   72 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE------EEEEEEEEEEEEEEEEESSCCGGGTEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc------eeeeeeeccceeeEEEEccCCHHhCcEEEEE
Confidence            57888888877777776 99999998776 7899999 11111      1111111222346799999999999999999


Q ss_pred             EEc
Q psy2775          91 AKN   93 (785)
Q Consensus        91 a~~   93 (785)
                      |.|
T Consensus        73 a~N   75 (75)
T PF13927_consen   73 ASN   75 (75)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            986

...

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.56  E-value=3.1e-07  Score=77.27  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=54.7

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--Ec------c--------C--CCCEEEeecCCccceEEEEEEc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--PL------Q--------E--TDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~~------~--------~--~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      ...|..+.+.+|++++|.|.+.+ +...+.|||...  ..      .        .  ..++.......   ...+|+|.
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~   77 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL---TRSSLTIK   77 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC---CccEEEEC
Confidence            46788999999999999999977 667899999642  11      0        0  12222222111   23569999


Q ss_pred             ccCCCCCeEEEEEEEcCC
Q psy2775          78 SIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~   95 (785)
                      +++.+|+|.|.|.+.+..
T Consensus        78 ~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          78 SAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CCChhhCEEEEEEeeCCC
Confidence            999999999999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.55  E-value=3e-07  Score=77.46  Aligned_cols=73  Identities=16%  Similarity=0.261  Sum_probs=55.3

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEE------e--------cCCCCeeEEee--CCeEEEEEccCCCCCCcee
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP------L--------LSSPKKREIFD--GENIILELKEADSETDAGD  629 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~------i--------~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~  629 (785)
                      ....+.+|++++|.|.+.+.+.+.+.|||....      +        ....++.+...  ...+.|+|.+++. +|+|.
T Consensus         6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG~   84 (109)
T cd04983           6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SDSAV   84 (109)
T ss_pred             CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HHCEE
Confidence            466899999999999999887889999985320      0        11233333332  3678999999999 99999


Q ss_pred             EEEEEEcCCc
Q psy2775         630 YKVVATNELG  639 (785)
Q Consensus       630 Y~C~a~n~~g  639 (785)
                      |.|.+.+..+
T Consensus        85 Y~C~~~~~~~   94 (109)
T cd04983          85 YFCALSESGG   94 (109)
T ss_pred             EEEEEecCCC
Confidence            9999997653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.55  E-value=4.7e-07  Score=74.09  Aligned_cols=83  Identities=13%  Similarity=0.231  Sum_probs=55.2

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEE-----c----cC----------CCCEEEeecCCccceEEEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEP-----L----QE----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~-----~----~~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.++.+..+.+|+++.|.|.........+.|||+...     +    ..          +.|..+..+       ++|.|
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n-------gSL~I   74 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN-------GSLLI   74 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC-------CcEEE
Confidence            4466778899999999999853333358999996321     1    00          111111111       35999


Q ss_pred             cccCCCCCeEEEEEEEcCC-eeEEEEeeEE
Q psy2775          77 KSIKKREEGVYTVVAKNRE-GEAKMDIPVK  105 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~-~~~~~~~~v~  105 (785)
                      .+++.+|+|.|+|.+.+.. ......+.|.
T Consensus        75 ~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          75 QNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             ecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            9999999999999999877 3444444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.54  E-value=2.8e-07  Score=74.11  Aligned_cols=73  Identities=15%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             CceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775         114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK  188 (785)
Q Consensus       114 p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  188 (785)
                      |.+...+ ...+..|+.|+|+|... .+...+.|+++|................|.|.+++.+|+|.|+|++.+.
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4555444 34678999999999885 5677899999987644322222344567999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.52  E-value=7.9e-07  Score=74.37  Aligned_cols=77  Identities=19%  Similarity=0.406  Sum_probs=54.0

Q ss_pred             CCceEecCCCeEEEEEEEEec----CCCeeEEEE---------------CCEEccC-----CCCEEEeecCCccceEEEE
Q psy2775          19 TKPVYAEENSEVTLEVRLVAV----PEPDLLWYY---------------NGEPLQE-----TDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~----p~~~i~W~~---------------~~~~~~~-----~~~~~~~~~~~~~~~~~~L   74 (785)
                      +..+.+..|++++|.|.....    +...|.|.+               ++.....     .+|+.+..+.  .....+|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daSI   82 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGSI   82 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeEE
Confidence            567889999999999999653    235899943               2222211     1244444332  2234679


Q ss_pred             EEcccCCCCCeEEEEEEEcCCee
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      .|.+++.+|.|.|+|.+.|..+.
T Consensus        83 ~I~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          83 VIHNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             EEccCCcccCEEEEEEEEcCCCc
Confidence            99999999999999999987763

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.51  E-value=9.3e-07  Score=73.80  Aligned_cols=78  Identities=18%  Similarity=0.352  Sum_probs=56.2

Q ss_pred             ecCeEEEEEEEecCC------CCceEEEeCC-----E-Eec--CCCC--------eeEEe---eCCeEEEEEccCCCCCC
Q psy2775         572 EKGTIRLMAKVKASP------APSIVWFRNN-----K-PLL--SSPK--------KREIF---DGENIILELKEADSETD  626 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P------~p~v~W~~~~-----~-~i~--~~~~--------~~~~~---~~~~~~L~i~~~~~~~d  626 (785)
                      .|+.|+|.|...+.|      .+.|.|+|..     . .+.  .+..        .+...   ..+..+|+|.+++. +|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence            389999999998764      3589999962     1 111  1111        11111   23567899999999 99


Q ss_pred             ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         627 AGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|.|.|.+.+..+..+..+.|.|.
T Consensus        80 ~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          80 SGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEE
Confidence            999999999988887887877775

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.50  E-value=1.1e-06  Score=73.39  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             CCCeEEEEEEEEecC------CCeeEEEECC-----E-Ec--cCCCCE--------EEeecCCccceEEEEEEcccCCCC
Q psy2775          26 ENSEVTLEVRLVAVP------EPDLLWYYNG-----E-PL--QETDEV--------VFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p------~~~i~W~~~~-----~-~~--~~~~~~--------~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      .|++|+|.|.....+      ...|.|++..     . .+  ......        +.... ........|+|.+++.+|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence            489999999997653      4689999962     1 11  011111        11100 111234679999999999


Q ss_pred             CeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          84 EGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        84 ~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +|.|.|.+.+..+.....+.|.|.
T Consensus        80 ~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          80 SGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEE
Confidence            999999999987777777777775

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.47  E-value=1.5e-06  Score=72.64  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             ecCeEEEEEEEecCC------CCceEEEeCCE------E-e-cC----------CCCeeEEe-eCCeEEEEEccCCCCCC
Q psy2775         572 EKGTIRLMAKVKASP------APSIVWFRNNK------P-L-LS----------SPKKREIF-DGENIILELKEADSETD  626 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P------~p~v~W~~~~~------~-i-~~----------~~~~~~~~-~~~~~~L~i~~~~~~~d  626 (785)
                      .|++|+|.|.....|      ...|.|+|...      . + ..          ..+..... ..+..+|.|.+++. +|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence            489999999988764      24699999531      1 1 10          01111111 12356899999999 99


Q ss_pred             ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         627 AGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|.|.|.+.+..|..+..+.|.|.
T Consensus        80 sG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          80 YGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             CEEEEEEEEecccceEEEEEEEEE
Confidence            999999999999988888888876

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.47  E-value=1.2e-06  Score=73.23  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=54.9

Q ss_pred             CCCeEEEEEEEEecC------CCeeEEEECCEE-------c-cC----------CCCEEEeecCCccceEEEEEEcccCC
Q psy2775          26 ENSEVTLEVRLVAVP------EPDLLWYYNGEP-------L-QE----------TDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p------~~~i~W~~~~~~-------~-~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      .|++|+|.|.....|      ...|.|+|....       + ..          ..|+.+...   ....++|+|.+++.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~   77 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA---HDLDASLVITDLRL   77 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC---CCCcEEEEEccCCh
Confidence            489999999986553      357999986410       1 10          112222111   11235799999999


Q ss_pred             CCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          82 REEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +|+|.|.|.+.+..+.....+.|+|.
T Consensus        78 ~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          78 EDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             HHCEEEEEEEEecccceEEEEEEEEE
Confidence            99999999999988888887777774

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.47  E-value=9.8e-07  Score=74.40  Aligned_cols=77  Identities=19%  Similarity=0.374  Sum_probs=51.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecC----CCeeEEEEC----CEE--c---cC------C----CCEEEeecCCccceEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP----EPDLLWYYN----GEP--L---QE------T----DEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p----~~~i~W~~~----~~~--~---~~------~----~~~~~~~~~~~~~~~~~L   74 (785)
                      -|..+.+.+|++++|.|.....+    ...|.|++.    +..  +   ..      .    .|..+.  .+.....+.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~--~~~~~~~~sL   81 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWD--GNIMRRDASI   81 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEe--cCCcCCceEE
Confidence            46789999999999999986443    246999852    111  1   00      0    111111  1112233669


Q ss_pred             EEcccCCCCCeEEEEEEEcCCe
Q psy2775          75 TIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      +|.+++.+|+|.|+|.+.|..+
T Consensus        82 ~I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          82 LIWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             EEeeCChhhCEEEEEEEEeCCC
Confidence            9999999999999999998765

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.47  E-value=1.1e-06  Score=72.44  Aligned_cols=76  Identities=12%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             cCeEEEEEEEecCCC---CceEEEeCCE--Ee---cC--------C----CCeeEEe---eCCeEEEEEccCCCCCCcee
Q psy2775         573 KGTIRLMAKVKASPA---PSIVWFRNNK--PL---LS--------S----PKKREIF---DGENIILELKEADSETDAGD  629 (785)
Q Consensus       573 g~~v~l~C~~~g~P~---p~v~W~~~~~--~i---~~--------~----~~~~~~~---~~~~~~L~i~~~~~~~d~G~  629 (785)
                      |++|+|.|...+...   ..+.|+|...  .+   ..        .    .|.....   ..+..+|+|.+++. +|+|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence            788999999864322   2688888541  11   00        0    1211111   13457899999999 99999


Q ss_pred             EEEEEEcCCcceEEEEEEEE
Q psy2775         630 YKVVATNELGSATHGARVTV  649 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+|.+.|..+..+..+.|.|
T Consensus        80 Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          80 YTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEecCCcEEEEEEEEEE
Confidence            99999998887666666655

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.46  E-value=6.9e-07  Score=74.54  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC-CCeeEEEECCE-----Ecc---------CCCCEEEeecCCccceEEEEEEccc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGE-----PLQ---------ETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      +...|..+.+.+|++|+|+|.+.+.. ...+.|||...     .+.         ...++.....    .....|+|.++
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~~   78 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS----GTDFTLTISRV   78 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEecc----CCEEEEEECCC
Confidence            45678889999999999999987654 56799998531     110         0112222111    12356999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy2775          80 KKREEGVYTVVAKNR   94 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~   94 (785)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          79 EPEDAAVYYCQQYGT   93 (106)
T ss_pred             ChHHCEEEEEEEeCC
Confidence            999999999998753

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.45  E-value=6.7e-07  Score=75.23  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCE--Ee-------------c---CCCCeeEEee-CCeEEEEEccCCCCCC
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PL-------------L---SSPKKREIFD-GENIILELKEADSETD  626 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~i-------------~---~~~~~~~~~~-~~~~~L~i~~~~~~~d  626 (785)
                      ....+.+|++++|.|.+.+ +.+.+.|||...  ..             .   ...++..... ...++|+|.+++. +|
T Consensus         6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~-~D   83 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP-ED   83 (110)
T ss_pred             CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh-hh
Confidence            3568999999999999988 777899999532  10             0   0123332222 2567899999999 99


Q ss_pred             ceeEEEEEEcCCc
Q psy2775         627 AGDYKVVATNELG  639 (785)
Q Consensus       627 ~G~Y~C~a~n~~g  639 (785)
                      +|.|.|.+.+..|
T Consensus        84 sg~Y~Ca~~~~~~   96 (110)
T cd05899          84 SAVYLCASSLGGG   96 (110)
T ss_pred             CEEEEEEeeCCCC
Confidence            9999999987643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.44  E-value=1.9e-06  Score=71.10  Aligned_cols=79  Identities=13%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             CCeEEEEEEEEecCC---CeeEEEECCE--Ec---cC------------CCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          27 NSEVTLEVRLVAVPE---PDLLWYYNGE--PL---QE------------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        27 G~~v~l~C~~~g~p~---~~i~W~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      |++|+|.|.......   ..+.|++...  .+   ..            ..|..+... .......+|+|.+++.+|+|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~sL~I~~v~~~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKD-AIAEGSVALRIHNVRASDEGL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecc-cccCCcEEEEEEcCChhhCEE
Confidence            789999999853322   3688988542  11   00            012222111 111223679999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEE
Q psy2775          87 YTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+|.+.+..+..+..+.|+|
T Consensus        80 Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          80 YTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEecCCcEEEEEEEEEE
Confidence            99999988877777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.43  E-value=1.7e-06  Score=71.17  Aligned_cols=75  Identities=16%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             CeEEEEEEEecCC---CCceEEEeCCEE----e-----------cCCCCeeEEeeC---CeEEEEEccCCCCCCceeEEE
Q psy2775         574 GTIRLMAKVKASP---APSIVWFRNNKP----L-----------LSSPKKREIFDG---ENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       574 ~~v~l~C~~~g~P---~p~v~W~~~~~~----i-----------~~~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      ++|+|.|...+.+   ...|.|+|....    +           ....+.+..+.+   ...+|+|.+++. +|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence            4789999998765   337999995431    0           111112222222   457899999999 99999999


Q ss_pred             EEEc-CCcceEEEEEEEE
Q psy2775         633 VATN-ELGSATHGARVTV  649 (785)
Q Consensus       633 ~a~n-~~g~~~~~~~l~V  649 (785)
                      .+.+ ..|...+...|.|
T Consensus        80 ~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcEEEEEEEEe
Confidence            9875 6788888777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.42  E-value=2.7e-06  Score=65.23  Aligned_cols=74  Identities=18%  Similarity=0.259  Sum_probs=52.8

Q ss_pred             cEEEEEEEeC--CCceEEEEECCEEcccCCCEEEEE-eC--cEEEEEEccCCCCCcEEEEEEEeec--CcceeEEEEEEE
Q psy2775         432 KASFEIELTK--GDALVKWYKDGKEIAFSENVTLSI-DG--KKQKLIIFSAGLEDAGEYSCRVGDT--GDKESKATLTVE  504 (785)
Q Consensus       432 ~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~~~~-~~--~~~~L~i~~~~~~d~G~Y~C~a~n~--g~~~~~~~l~V~  504 (785)
                      .+.|.|.+.+  |.+.|+|+++++++.......... .+  ..+.|.|..-..+|...|+|+|.|.  .....+..|.|.
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            3689999998  778899999999986543211111 12  3678888888888888899999995  335556666665


Q ss_pred             c
Q psy2775         505 A  505 (785)
Q Consensus       505 ~  505 (785)
                      .
T Consensus        81 y   81 (82)
T cd05883          81 Y   81 (82)
T ss_pred             E
Confidence            3

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.42  E-value=3e-06  Score=65.00  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             EEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          30 VTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        30 v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      +.|.|.+.|. |.+.|.||+++.++...... .....+.....++|.|..-..+|+..|+|+|.|..-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            6899999654 88999999999998665322 223334455668899987777788899999998764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.42  E-value=7.8e-07  Score=72.72  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=57.3

Q ss_pred             cCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          25 EENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        25 ~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      ..|+.++|.|.+.|. |. +.|+|++++..+.....  ......++.....+.|.|......|.|.|+|+|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            579999999999988 53 68999999998876543  233344555556678989888888999999999987653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.41  E-value=1.8e-06  Score=71.57  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             ecCeEEEEEEEecCC------------CCceEEEeCC--E--E-ec-C------C----CCeeEEe---eCCeEEEEEcc
Q psy2775         572 EKGTIRLMAKVKASP------------APSIVWFRNN--K--P-LL-S------S----PKKREIF---DGENIILELKE  620 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P------------~p~v~W~~~~--~--~-i~-~------~----~~~~~~~---~~~~~~L~i~~  620 (785)
                      .|++|+|.|......            .+.|.|+|..  .  . +. .      .    .|.....   ..+..+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999987542            3589999842  1  1 10 0      0    1222211   23567899999


Q ss_pred             CCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         621 ADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       621 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      ++. +|+|.|.|.+.+..........|.|.
T Consensus        81 l~~-sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRS-NDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             ccc-ccCEEEEEEEecCCCCceeEEEEEEE
Confidence            999 99999999999877777776666665

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.41  E-value=1.3e-06  Score=72.46  Aligned_cols=81  Identities=14%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             CCCeEEEEEEEEecC------------CCeeEEEECCE----E-cc-CC----------CCEEEeecCCccceEEEEEEc
Q psy2775          26 ENSEVTLEVRLVAVP------------EPDLLWYYNGE----P-LQ-ET----------DEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p------------~~~i~W~~~~~----~-~~-~~----------~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .|++|+|.|......            .+.|.|+|...    . +. ..          +|..+.... ......+|+|.
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~-~~~~~asL~I~   79 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP-AIPSDATLEIT   79 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC-CCCCCcEEEEe
Confidence            489999999996442            35899998521    1 10 00          123232110 01123679999


Q ss_pred             ccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          78 SIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +++.+|+|.|+|.+.+........+.|.|.
T Consensus        80 nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          80 ELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             ecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            999999999999999877666666666664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.41  E-value=9.7e-07  Score=73.80  Aligned_cols=70  Identities=19%  Similarity=0.296  Sum_probs=52.2

Q ss_pred             eeeecCeEEEEEEEecC-CCCceEEEeCCE-----Eec------------CCCCeeEEeeC--CeEEEEEccCCCCCCce
Q psy2775         569 TVKEKGTIRLMAKVKAS-PAPSIVWFRNNK-----PLL------------SSPKKREIFDG--ENIILELKEADSETDAG  628 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~-----~i~------------~~~~~~~~~~~--~~~~L~i~~~~~~~d~G  628 (785)
                      .+.+|+.++|.|.+.+. +...+.|+|...     .+.            ...+.......  ...+|+|.+++. +|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence            57789999999999986 666899999432     110            11233333333  567999999999 9999


Q ss_pred             eEEEEEEcCCc
Q psy2775         629 DYKVVATNELG  639 (785)
Q Consensus       629 ~Y~C~a~n~~g  639 (785)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999998775

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.40  E-value=1.2e-06  Score=73.08  Aligned_cols=72  Identities=14%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             eeeeeeeecCeEEEEEEEecCC-CCceEEEeCC--E---Eec---------CCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASP-APSIVWFRNN--K---PLL---------SSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~--~---~i~---------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      +....+.+|++|+|.|.+.+.. ...+.|||..  .   .+.         ...++.....+..+.|+|.+++. +|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsg~   85 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP-EDAAV   85 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh-HHCEE
Confidence            3456789999999999998775 5689999843  1   111         01233333344567899999999 99999


Q ss_pred             EEEEEEcC
Q psy2775         630 YKVVATNE  637 (785)
Q Consensus       630 Y~C~a~n~  637 (785)
                      |.|.+.+.
T Consensus        86 Y~Ca~~~~   93 (106)
T cd04980          86 YYCQQYGT   93 (106)
T ss_pred             EEEEEeCC
Confidence            99999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.40  E-value=1.1e-06  Score=73.50  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             eEecCCCeEEEEEEEEec-CCCeeEEEECCEE-----c------------cCCCCEEEeecCCccceEEEEEEcccCCCC
Q psy2775          22 VYAEENSEVTLEVRLVAV-PEPDLLWYYNGEP-----L------------QETDEVVFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        22 ~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      +.+.+|++++|.|.+.+. +...+.|++....     +            ....++.+.....  .....|+|.+++.+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL~I~~v~~~D   78 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS--KSSFTLTISSLQPED   78 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc--CCEEEEEECCCCHHH
Confidence            468899999999999876 6678999985421     1            0112333333321  123569999999999


Q ss_pred             CeEEEEEEEcCCe
Q psy2775          84 EGVYTVVAKNREG   96 (785)
Q Consensus        84 ~G~Y~C~a~~~~~   96 (785)
                      +|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999997664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.39  E-value=1.4e-06  Score=74.24  Aligned_cols=76  Identities=16%  Similarity=0.301  Sum_probs=54.1

Q ss_pred             eecCCceEecCCCeEEEEEEEEe--cCCCeeEEEECC--EEc------c-----------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVA--VPEPDLLWYYNG--EPL------Q-----------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g--~p~~~i~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      .+.|..+.+.+|++|+|.|.+.+  .+...+.||+..  ...      .           ...++.+..+..  .....|
T Consensus         2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L   79 (116)
T cd04982           2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG--KSTSTL   79 (116)
T ss_pred             CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC--CCEEEE
Confidence            34678899999999999999977  567789999952  110      0           122333332221  123569


Q ss_pred             EEcccCCCCCeEEEEEEEc
Q psy2775          75 TIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +|.+++.+|+|.|.|.+..
T Consensus        80 ~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          80 TIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEEECCHHHCEEEEEEEec
Confidence            9999999999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.39  E-value=1.8e-06  Score=73.29  Aligned_cols=78  Identities=21%  Similarity=0.367  Sum_probs=51.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecC----CCeeEEEECCE------Ecc---C-------C----CCEEEeecCCccceEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP----EPDLLWYYNGE------PLQ---E-------T----DEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p----~~~i~W~~~~~------~~~---~-------~----~~~~~~~~~~~~~~~~~   73 (785)
                      .|..+.+.+|++++|.|..+...    ...+.|++...      .+.   .       .    .|..+.  ++.....++
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~s   81 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV--GNPSRKDAS   81 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe--cCCcCCeeE
Confidence            47788999999999999986432    24699987431      010   0       0    111111  111122367


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCee
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      |+|.+++.+|+|.|.|.+.+....
T Consensus        82 L~I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          82 IVIHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EEEeeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999999987553

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.38  E-value=1.5e-06  Score=69.63  Aligned_cols=75  Identities=12%  Similarity=0.118  Sum_probs=51.1

Q ss_pred             eeeeeeeecCeEEEEEEEec-CCCCc--eEEEeCCEEecCCCCeeE--EeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         565 FEEKTVKEKGTIRLMAKVKA-SPAPS--IVWFRNNKPLLSSPKKRE--IFDGENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g-~P~p~--v~W~~~~~~i~~~~~~~~--~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      +.+..+.+|+.++|+|.+.| .|.+.  |.|||+++++........  ......++|++..-.. +|.-.|+|+|.++.+
T Consensus         8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~-D~g~~~sC~A~l~l~   86 (100)
T cd05755           8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDRE-DHGANFSCETELDLR   86 (100)
T ss_pred             cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchh-hCCcEEEEEEEeccC
Confidence            33556789999999999987 47775  799999999864321100  0122345677764433 444479999999876


Q ss_pred             c
Q psy2775         640 S  640 (785)
Q Consensus       640 ~  640 (785)
                      .
T Consensus        87 ~   87 (100)
T cd05755          87 P   87 (100)
T ss_pred             c
Confidence            4

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.38  E-value=2.5e-06  Score=70.11  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=50.9

Q ss_pred             CeEEEEEEEEecC---CCeeEEEECCEE----c-----------cC--CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          28 SEVTLEVRLVAVP---EPDLLWYYNGEP----L-----------QE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        28 ~~v~l~C~~~g~p---~~~i~W~~~~~~----~-----------~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ++|+|.|.....+   ...|.|+|....    +           ..  ..+..+.... .  ....|+|.+++.+|+|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~--~~~sL~I~~v~~~D~G~Y   77 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-L--EDATISISNLRLEDEGNY   77 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-C--CceEEEEccCCcccCEEE
Confidence            5799999997654   347999996531    0           00  1122221111 0  235799999999999999


Q ss_pred             EEEEEc-CCeeEEEEeeEEE
Q psy2775          88 TVVAKN-REGEAKMDIPVKV  106 (785)
Q Consensus        88 ~C~a~~-~~~~~~~~~~v~v  106 (785)
                      .|.+.. ..|.....+.|.|
T Consensus        78 ~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          78 ICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEEeCCCCcEEEEEEEEe
Confidence            999874 6677777777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.37  E-value=2.6e-06  Score=66.83  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=44.3

Q ss_pred             EEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEe-eCC----eEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         576 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF-DGE----NIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       576 v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~-~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      ++|.|.+.|. |.+.|+|+++++++.... ..... .++    .+.|.+..... ++.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhcCC
Confidence            6899999775 999999999999986433 22222 222    23455554444 66778999999987653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.37  E-value=3.7e-06  Score=70.17  Aligned_cols=81  Identities=17%  Similarity=0.303  Sum_probs=54.1

Q ss_pred             CCCeEEEEEEEEecC----------CCeeEEEECC--EE---c-cCC----------CCEEEeecCCccceEEEEEEccc
Q psy2775          26 ENSEVTLEVRLVAVP----------EPDLLWYYNG--EP---L-QET----------DEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p----------~~~i~W~~~~--~~---~-~~~----------~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      .|++|+|+|.....+          ...|.|++..  ..   + ...          +|..+... ......+.|+|.++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~-~~~~~~asL~I~~l   79 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNY-PENRGDASLEISRL   79 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccC-CCCCCcEEEEECCC
Confidence            489999999996543          2579999852  11   0 001          12222111 01123366999999


Q ss_pred             CCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          80 KKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +.+|+|.|.|.+.......+..+.|.|.
T Consensus        80 ~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          80 RSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             ChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            9999999999999877667777777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.35  E-value=3.9e-06  Score=70.21  Aligned_cols=83  Identities=17%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             eeeeeeecCeEEEEEEEecCC----CCceEEE---------------eCCEEecCC-CC--eeEEe----eCCeEEEEEc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASP----APSIVWF---------------RNNKPLLSS-PK--KREIF----DGENIILELK  619 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P----~p~v~W~---------------~~~~~i~~~-~~--~~~~~----~~~~~~L~i~  619 (785)
                      .+..+..|+.++|.|......    ...|.|.               ++|...... ..  -++.+    ..+..+|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            366789999999999987643    3489993               334443211 10  12222    2345689999


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         620 EADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      +++. +|+|.|+|.+.|.-+.......+.+
T Consensus        86 nv~~-sD~G~Y~C~v~n~p~~~~~~~~~~l  114 (116)
T cd05879          86 NLDY-TDNGTFTCDVKNPPDIVGKSSQVTL  114 (116)
T ss_pred             cCCc-ccCEEEEEEEEcCCCcCCceeEEEE
Confidence            9999 9999999999998765444444443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.35  E-value=3.2e-06  Score=66.36  Aligned_cols=68  Identities=9%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             EEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          30 VTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        30 v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      ++|.|.+.+. |.+.|.|++++..+...........++.....+.|.+.....+|.+.|+|+|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999665 8899999999998865432222223334445567888776677788999999987653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.32  E-value=2e-06  Score=70.06  Aligned_cols=78  Identities=21%  Similarity=0.344  Sum_probs=53.1

Q ss_pred             eecCeEEEEEEEec-CCCCceEEEeCCEEecC-------------CCC--eeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         571 KEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLS-------------SPK--KREIFDGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       571 ~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~-------------~~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      ..|++|+|.|.... .....+.|+|....+..             +++  .+.......+.|+|.+++. +|+|.|.|.+
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~-~DsG~Y~c~v   80 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKM-EDAGSYRAEI   80 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCch-HHCEEEEEEE
Confidence            36999999998764 34447999986533211             011  1233345568899999999 9999999999


Q ss_pred             EcCCcce-EEEEEEEE
Q psy2775         635 TNELGSA-THGARVTV  649 (785)
Q Consensus       635 ~n~~g~~-~~~~~l~V  649 (785)
                      .+..|.. ...+.|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            9887654 33344443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.31  E-value=1.1e-06  Score=71.57  Aligned_cols=82  Identities=16%  Similarity=0.309  Sum_probs=51.6

Q ss_pred             cCCCeEEEEEEEEe-cCCCeeEEEECCEEccCC------CCEEEee-----cCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          25 EENSEVTLEVRLVA-VPEPDLLWYYNGEPLQET------DEVVFSD-----QSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        25 ~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      ..|++|+|.|.... .....+.|+++...+...      .......     .-........|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998754 344679999875432110      1111100     00001112569999999999999999999


Q ss_pred             cCCeeE-EEEeeEEE
Q psy2775          93 NREGEA-KMDIPVKV  106 (785)
Q Consensus        93 ~~~~~~-~~~~~v~v  106 (785)
                      ...+.. ...+.|+|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            876543 45566665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.31  E-value=5.1e-06  Score=67.10  Aligned_cols=75  Identities=12%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |.|...| ...|.+|++|+|.|.... ....+.|+|++.....    ............+.|.|.+++.+|+|.|+|...
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~----~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPV----LHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCc----eecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            5565555 667889999999998754 4567999998865321    110111112234679999999999999999986


Q ss_pred             c
Q psy2775          93 N   93 (785)
Q Consensus        93 ~   93 (785)
                      .
T Consensus        76 ~   76 (94)
T cd05711          76 Y   76 (94)
T ss_pred             C
Confidence            3

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.29  E-value=1.9e-06  Score=70.35  Aligned_cols=69  Identities=20%  Similarity=0.294  Sum_probs=49.9

Q ss_pred             eecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCC-eeEEe-eCCe----EEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         571 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK-KREIF-DGEN----IILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~-~~~~~-~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ..|+.++|.|.+.|+ |. +.|+|+++|..+..... ..... .++.    +.|.+..... +|.|.|+|.|.|....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCCC
Confidence            468999999999998 64 58999999999866543 11222 2222    3466666554 6999999999998664

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.28  E-value=6.8e-06  Score=64.44  Aligned_cols=64  Identities=20%  Similarity=0.339  Sum_probs=45.3

Q ss_pred             EEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCC--e----EEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         576 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGE--N----IILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       576 v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~--~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      ++|.|.+.|. |.+.|+|+++|+++..... ....++.  .    ++|.|..... +|...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~-d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTRE-DDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecch-hCCCEEEEEEECcccCC
Confidence            6899999886 9999999999999865432 2322222  2    3455555444 67788999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.27  E-value=3.8e-06  Score=68.77  Aligned_cols=76  Identities=16%  Similarity=0.269  Sum_probs=50.4

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeCCE-----Eec---CC----------CCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRNNK-----PLL---SS----------PKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~-----~i~---~~----------~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                      +..+.+|+.+.|.|.-  .|..  .+.|||+..     .|.   ..          .....+.  .+++|.|++++. +|
T Consensus         7 p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~--~ngSL~I~~v~~-~D   81 (105)
T cd05774           7 PPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY--PNGSLLIQNVTQ-KD   81 (105)
T ss_pred             CCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe--CCCcEEEecCCc-cc
Confidence            5578899999999864  4555  899999531     110   00          0111111  134799999999 99


Q ss_pred             ceeEEEEEEcCCc-ceEEEEEE
Q psy2775         627 AGDYKVVATNELG-SATHGARV  647 (785)
Q Consensus       627 ~G~Y~C~a~n~~g-~~~~~~~l  647 (785)
                      +|.|+|.+.|..+ .......|
T Consensus        82 ~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          82 TGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             CEEEEEEEEeCCccEEEEEEEE
Confidence            9999999999873 34444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.27  E-value=4.6e-06  Score=66.88  Aligned_cols=69  Identities=13%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             ceEeccCCcEEEEEEEec-cCCCe--EEEeECCEEcccceEEE-----eCCEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         122 DVSITEGESAVLSVQVGG-EPSPK--VEWYKDGKLIKDRQITS-----EKNTHTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       122 ~~~~~~G~~v~l~C~~~g-~p~~~--v~W~~~g~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ...+.+|+.++|+|.+.| .|.+.  |.||+++..+.......     .....+|.+...+.+|...|+|+|.+..+
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR   86 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence            344679999999999965 67665  79999999997654322     22355777776666677799999988764

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.26  E-value=1.1e-05  Score=66.52  Aligned_cols=80  Identities=15%  Similarity=0.258  Sum_probs=53.5

Q ss_pred             CCeEEEEEEEEecC-----------CCeeEEEECC-----E-----Ec--cC----------CCCEEEeecCCccceEEE
Q psy2775          27 NSEVTLEVRLVAVP-----------EPDLLWYYNG-----E-----PL--QE----------TDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        27 G~~v~l~C~~~g~p-----------~~~i~W~~~~-----~-----~~--~~----------~~~~~~~~~~~~~~~~~~   73 (785)
                      |.+++|+|.+.-.|           .+.|.|++-.     .     .+  ..          ..|..+... ....+..+
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~-~~~~g~as   80 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSH-PEDQGDAS   80 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeecc-CCcCCceE
Confidence            78999999997443           2489998741     1     11  00          112222211 11123477


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus        81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            9999999999999999999888777777777764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.26  E-value=4.4e-06  Score=71.01  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=54.5

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCE--E---c---------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGE--P---L---------QETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      +...|..+.+.+|++|+|+|..... ....+.||+...  .   +         ...+|+.+..+..  ....+|+|.++
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I~~~   79 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKA--QKSISLTISAL   79 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEecc--CCEEEEEECCC
Confidence            4567889999999999999998653 456799998421  1   1         0123444332211  12356999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy2775          80 KKREEGVYTVVAKNR   94 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~   94 (785)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          80 QLEDSAKYFCALSTL   94 (116)
T ss_pred             CHHHCEEEEEEEECC
Confidence            999999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.26  E-value=3.9e-06  Score=68.07  Aligned_cols=71  Identities=20%  Similarity=0.310  Sum_probs=48.5

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCEEccC--------C----------CCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQE--------T----------DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      |++|+|.|.....+...|.|+++......        .          .+..+.  .     ...|+|.+++.+|+|.|+
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~-----~~sL~I~~l~~~DsG~Y~   73 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P-----NGSLLIQNLTKEDSGTYT   73 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C-----CceEEEccCCchhcEEEE
Confidence            89999999987656678999997643211        0          111111  1     145999999999999999


Q ss_pred             EEEEcCCee-EEEEeeE
Q psy2775          89 VVAKNREGE-AKMDIPV  104 (785)
Q Consensus        89 C~a~~~~~~-~~~~~~v  104 (785)
                      |.+....+. ....+.|
T Consensus        74 c~v~~~~~~~~~~~~~l   90 (92)
T cd05741          74 LQIISTNGVTENAKFFL   90 (92)
T ss_pred             EEEEcCCCcEEEEEEEE
Confidence            999987643 3334444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.25  E-value=4.3e-06  Score=71.15  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             eeeeeecCeEEEEEEEec--CCCCceEEEeCC--EE---e---c-----------CCCCeeEEeeC--CeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKA--SPAPSIVWFRNN--KP---L---L-----------SSPKKREIFDG--ENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~--~~---i---~-----------~~~~~~~~~~~--~~~~L~i~~~~~  623 (785)
                      ...+.+|++++|.|.+.+  .+.+.+.|||..  ..   |   .           ...++.+..+.  ..+.|+|.+++.
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            457889999999999988  677899999942  11   0   0           12334444444  578999999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|+|.|.|.+...
T Consensus        87 -~Dsg~Y~C~~~~~   99 (116)
T cd04982          87 -EDSATYYCAYWES   99 (116)
T ss_pred             -HHCEEEEEEEecC
Confidence             9999999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.25  E-value=1.1e-05  Score=63.29  Aligned_cols=67  Identities=13%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             EEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          30 VTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        30 v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      ++|+|.+.|. |.+.|.|+++|..+...........+ +.....+.|.|.....+|...|+|+|.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            6899999775 88999999999988664432222222 2344457788877777888999999998764

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.24  E-value=7.5e-06  Score=69.01  Aligned_cols=74  Identities=16%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             eeeeeeecCeEEEEEEEecCCC----CceEEEeC----CEE--e---c------CCCCe--eEEe----eCCeEEEEEcc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPA----PSIVWFRN----NKP--L---L------SSPKK--REIF----DGENIILELKE  620 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~----~~~--i---~------~~~~~--~~~~----~~~~~~L~i~~  620 (785)
                      ..+.+.+|+.++|.|.....++    ..|.|++.    +.+  +   .      ...++  +..+    ..+..+|+|.+
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            4678999999999999875432    36999752    211  1   0      01111  1111    12456899999


Q ss_pred             CCCCCCceeEEEEEEcCCcc
Q psy2775         621 ADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       621 ~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ++. +|+|.|.|.+.|..+.
T Consensus        86 v~~-~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          86 LQP-TDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CCh-hhCEEEEEEEEeCCCC
Confidence            999 9999999999987664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.24  E-value=9.8e-06  Score=66.94  Aligned_cols=81  Identities=15%  Similarity=0.267  Sum_probs=54.0

Q ss_pred             CCCeEEEEEEEEecC-------CCeeEEEECC-----EEc----cC----------CCCEEEeecCCccceEEEEEEccc
Q psy2775          26 ENSEVTLEVRLVAVP-------EPDLLWYYNG-----EPL----QE----------TDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p-------~~~i~W~~~~-----~~~----~~----------~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      .|++|+|+|...-.|       .+.|.|.+..     ..+    ..          ..|..+... .......+|+|.++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~-~~~~~~asL~i~nv   79 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGY-PKNRYNASLVLSRL   79 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecC-CCCCceEEEEECCC
Confidence            378999999975322       3689999851     111    01          123333321 12224478999999


Q ss_pred             CCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          80 KKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +.+|+|.|+|.+.......+..+.|.|.
T Consensus        80 ~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          80 RYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             CHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            9999999999999877666677777764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.23  E-value=4.7e-06  Score=68.31  Aligned_cols=68  Identities=16%  Similarity=0.321  Sum_probs=50.5

Q ss_pred             eeeecCeEEEEEEEecC--CCCceEEEeCCE---E--ec---------CCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         569 TVKEKGTIRLMAKVKAS--PAPSIVWFRNNK---P--LL---------SSPKKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~--P~p~v~W~~~~~---~--i~---------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      .+.+|++++|.|.+.+.  ....+.|||...   +  +.         ..+++....++....|+|.+++. +|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQT-EDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCh-hhCEEEEE
Confidence            57789999999999875  556799998432   1  10         12244444555678899999999 99999999


Q ss_pred             EEEcC
Q psy2775         633 VATNE  637 (785)
Q Consensus       633 ~a~n~  637 (785)
                      .+.+.
T Consensus        81 ~~~~~   85 (98)
T cd04984          81 QVWDS   85 (98)
T ss_pred             EEccC
Confidence            98764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.22  E-value=4.8e-06  Score=68.29  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=47.5

Q ss_pred             eEecCCCeEEEEEEEEec--CCCeeEEEECCE--Ec---c---------CCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          22 VYAEENSEVTLEVRLVAV--PEPDLLWYYNGE--PL---Q---------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        22 ~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      +.|.+|++|+|.|.+.+.  ....+.||+...  ..   .         ...++......    ....|+|.+++.+|+|
T Consensus         1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~----~~~~L~I~~~~~~Dsg   76 (98)
T cd04984           1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG----NTASLTISGAQTEDEA   76 (98)
T ss_pred             CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC----CEEEEEECCCChhhCE
Confidence            368899999999998764  446799998542  11   0         01233322211    2356999999999999


Q ss_pred             EEEEEEEcC
Q psy2775          86 VYTVVAKNR   94 (785)
Q Consensus        86 ~Y~C~a~~~   94 (785)
                      .|.|.+.+.
T Consensus        77 ~Y~C~~~~~   85 (98)
T cd04984          77 DYYCQVWDS   85 (98)
T ss_pred             EEEEEEccC
Confidence            999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.20  E-value=0.00021  Score=70.83  Aligned_cols=79  Identities=18%  Similarity=0.304  Sum_probs=55.2

Q ss_pred             EEEEEEccCCCCCcEEEEEEEeec-Ccce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecc
Q psy2775         469 KQKLIIFSAGLEDAGEYSCRVGDT-GDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLF  545 (785)
Q Consensus       469 ~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  545 (785)
                      ...|+|..++...+|.|+=...+. +...  ..+.+....+        |++.+.                         
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~--------Psvsv~-------------------------  227 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRR--------PSLSIR-------------------------  227 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecC--------Cccccc-------------------------
Confidence            456999999999999999997764 3333  3333333333        222221                         


Q ss_pred             cccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC--ceEEEeCCEEecC
Q psy2775         546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLLS  601 (785)
Q Consensus       546 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p--~v~W~~~~~~i~~  601 (785)
                                           ...+.+|+...-.|.+..+ |+-  .+.||+||.++..
T Consensus       228 ---------------------~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~  265 (466)
T PHA03270        228 ---------------------PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA  265 (466)
T ss_pred             ---------------------CCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence                                 3357789999999999886 544  6899999998853

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.20  E-value=1.8e-05  Score=65.61  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             ceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCe-EEEEEEEcCCe
Q psy2775          21 PVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEG-VYTVVAKNREG   96 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G-~Y~C~a~~~~~   96 (785)
                      ......|+.++|.|.+.|. |. ..++|++||+.+...........+ +.+...+.|.+.. ...|.| .|+|.+.+...
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence            4456689999999999886 53 689999999998653322222222 3555567788875 445544 59999998764


Q ss_pred             e
Q psy2775          97 E   97 (785)
Q Consensus        97 ~   97 (785)
                      .
T Consensus        94 ~   94 (111)
T cd05772          94 Q   94 (111)
T ss_pred             C
Confidence            3

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.20  E-value=1.1e-05  Score=67.27  Aligned_cols=78  Identities=21%  Similarity=0.338  Sum_probs=54.5

Q ss_pred             ecCeEEEEEEEecCCC----------CceEEEeCC--EEe--c--------CCCCe--eEEe-----eCCeEEEEEccCC
Q psy2775         572 EKGTIRLMAKVKASPA----------PSIVWFRNN--KPL--L--------SSPKK--REIF-----DGENIILELKEAD  622 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~----------p~v~W~~~~--~~i--~--------~~~~~--~~~~-----~~~~~~L~i~~~~  622 (785)
                      .|+.|+|.|.....+.          ..|.|+|..  ...  .        ..+.+  +...     ..+...|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            3899999999986542          469999952  111  0        01111  1111     2356789999999


Q ss_pred             CCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         623 SETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      . +|+|.|.|.+.......+....|.|.
T Consensus        81 ~-sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 S-SDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             h-hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            9 99999999999877777777777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.19  E-value=1.7e-05  Score=67.36  Aligned_cols=78  Identities=19%  Similarity=0.349  Sum_probs=54.8

Q ss_pred             eeecCCceEecCCCeEEEEEEEE-ecCCCeeEEEECCE-----Ecc---C-----------CCCEEEeecCCccceEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGE-----PLQ---E-----------TDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~-----~~~---~-----------~~~~~~~~~~~~~~~~~~L   74 (785)
                      +...|..+.+.+|+++.|.|... ......+.|++...     .+.   .           ..+..+.....  ....+|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL   81 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGS--QNNFSL   81 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETT--TTEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeeccc--CCeEEE
Confidence            34458899999999999999998 44556899998322     111   0           11222222222  123569


Q ss_pred             EEcccCCCCCeEEEEEEEcC
Q psy2775          75 TIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      +|.+++.+|+|.|.|.+...
T Consensus        82 ~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   82 TIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             EESSESGGGEEEEEEEEEES
T ss_pred             EECCCCcCcCEEEEEEEEEC
Confidence            99999999999999999976

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.17  E-value=6.5e-06  Score=67.56  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             eEecCCCeEEEEEEEEe-cCCCeeEEEECCEE-----c--------cCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          22 VYAEENSEVTLEVRLVA-VPEPDLLWYYNGEP-----L--------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        22 ~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +.+.+|++|+|.|.... .....+.|++....     +        ....++.+..+.  .....+|+|.+++.+|+|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y   79 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP--DNGVFTVTLNQLRKEDAGWY   79 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC--CCCEEEEEEcCCCHHHCEEE
Confidence            57889999999999854 24567899986421     1        011334333222  12335799999999999999


Q ss_pred             EEEEEcCC
Q psy2775          88 TVVAKNRE   95 (785)
Q Consensus        88 ~C~a~~~~   95 (785)
                      .|.+....
T Consensus        80 ~C~~~~~~   87 (98)
T cd05716          80 WCGVGDDG   87 (98)
T ss_pred             EEEcccCC
Confidence            99998654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.16  E-value=1e-05  Score=63.19  Aligned_cols=64  Identities=22%  Similarity=0.300  Sum_probs=44.0

Q ss_pred             EEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEee-CC----eEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         576 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFD-GE----NIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       576 v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~-~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ++|.|.+.| +|.+.|+|+|||+++........... ++    .++|.+..-.. ++...|+|.|.|....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechhcC
Confidence            689999988 48889999999999865432222221 11    23566765444 6677799999997654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.15  E-value=1.2e-05  Score=68.10  Aligned_cols=74  Identities=16%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             eeeeeeecCeEEEEEEEecCC----CCceEEEeCCE------Eec----------CCCCe--eEEe----eCCeEEEEEc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASP----APSIVWFRNNK------PLL----------SSPKK--REIF----DGENIILELK  619 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P----~p~v~W~~~~~------~i~----------~~~~~--~~~~----~~~~~~L~i~  619 (785)
                      ....+.+|+.++|.|......    ...+.|++...      .+.          ...++  +..+    ..+.++|+|.
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH   85 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence            466889999999999987542    24699987321      110          01111  1111    1234789999


Q ss_pred             cCCCCCCceeEEEEEEcCCcc
Q psy2775         620 EADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      +++. +|+|.|.|.+.|.-+.
T Consensus        86 ~v~~-~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          86 NLQF-TDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eCCc-ccCEEEEEEEEeCCCC
Confidence            9999 9999999999987554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.14  E-value=1.5e-05  Score=62.37  Aligned_cols=67  Identities=9%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             EEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEe-ecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          30 VTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFS-DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        30 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      ++|.|.+.| .|.+.|+|++++..+......... ..++.....+.|.+.....+|...|+|+|.+...
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999976 477899999999998654322222 2333444567788887677788899999998654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.14  E-value=1e-05  Score=65.57  Aligned_cols=66  Identities=18%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecC--------C------CC--eeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLS--------S------PK--KREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~--------~------~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      |++|+|.|.....+...|.|+|+......        .      ..  .+.... ..++|.|.+++. +|+|.|+|.+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~l~~-~DsG~Y~c~v~~   78 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-PNGSLLIQNLTK-EDSGTYTLQIIS   78 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-CCceEEEccCCc-hhcEEEEEEEEc
Confidence            78999999988766668999997633211        0      00  011122 237899999999 999999999998


Q ss_pred             CCcc
Q psy2775         637 ELGS  640 (785)
Q Consensus       637 ~~g~  640 (785)
                      ..|.
T Consensus        79 ~~~~   82 (92)
T cd05741          79 TNGV   82 (92)
T ss_pred             CCCc
Confidence            8643

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.13  E-value=1.4e-05  Score=64.14  Aligned_cols=84  Identities=20%  Similarity=0.349  Sum_probs=58.4

Q ss_pred             CeeeecCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      |.|......+... |+.+.|+|.+ .|+|.+.|.|+.++..+..... ......++.....++|++..-..+|...++|.
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~   79 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCR   79 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEE
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEE
Confidence            4566666555555 8999999987 6779999999999987722211 22233444445567898887666788899999


Q ss_pred             EEcCCee
Q psy2775          91 AKNREGE   97 (785)
Q Consensus        91 a~~~~~~   97 (785)
                      |.+....
T Consensus        80 ~~~~~~~   86 (89)
T PF08205_consen   80 ASHPALS   86 (89)
T ss_dssp             EEETTCC
T ss_pred             EECCccC
Confidence            9987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.11  E-value=1.9e-05  Score=64.72  Aligned_cols=76  Identities=14%  Similarity=0.282  Sum_probs=49.5

Q ss_pred             eEEEEEEEEecC---CCeeEEEECCE-----Ec---cC----------CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          29 EVTLEVRLVAVP---EPDLLWYYNGE-----PL---QE----------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        29 ~v~l~C~~~g~p---~~~i~W~~~~~-----~~---~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +|+|.|.....+   ...|.|+|...     .+   ..          .+|..+..+...  ..+.|+|.+++.+|+|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~--~~~sL~I~nv~~sD~GtY   79 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPI--ADGALILRNAVQADEGKY   79 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCC--CceEEEEecCccccceEE
Confidence            689999986443   34799998421     11   00          134444432222  235699999999999999


Q ss_pred             EEEEEc-CCeeEEEEeeEEE
Q psy2775          88 TVVAKN-REGEAKMDIPVKV  106 (785)
Q Consensus        88 ~C~a~~-~~~~~~~~~~v~v  106 (785)
                      .|.+.+ ..|..+..+.|.|
T Consensus        80 ~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          80 KCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEEeCCCCCeeeEEEEEe
Confidence            999997 5565555666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.10  E-value=2.1e-05  Score=69.31  Aligned_cols=87  Identities=15%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             CCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEcc----CC--------CCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          19 TKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQ----ET--------DEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ...++|.+|++|+|.|... +...+.+.|+|.+..+.    .+        +++.+. ..+.  ..++|+|.+++.+|+|
T Consensus        22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~m-S~s~--~~StItIknVt~sDeG   98 (189)
T PHA02987         22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYL-SKSF--NESTILIKNVSLKDNG   98 (189)
T ss_pred             eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEe-ccCC--CcceEEEEeCChhhCe
Confidence            4568899999999999984 55567899999744221    00        122211 1111  2367999999999999


Q ss_pred             EEEEEEEc-CCe-eEEEEeeEEEeC
Q psy2775          86 VYTVVAKN-REG-EAKMDIPVKVNT  108 (785)
Q Consensus        86 ~Y~C~a~~-~~~-~~~~~~~v~v~~  108 (785)
                      .|.|...- ..| ..+...-|.|..
T Consensus        99 cY~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987         99 CYTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEEEEEecCCCCCceeEEEEEEEc
Confidence            99999873 345 566666777763

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.09  E-value=1.9e-05  Score=67.22  Aligned_cols=76  Identities=13%  Similarity=0.133  Sum_probs=51.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC------CCeeEEEECCEE------cc--CC---------CCEEEeecCCccceEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP------EPDLLWYYNGEP------LQ--ET---------DEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p------~~~i~W~~~~~~------~~--~~---------~~~~~~~~~~~~~~~~~   73 (785)
                      ..|..+.+.+|++|+|.|......      ...+.||+....      +.  ..         .|+.+.  ++.....+.
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~--~~~~~~~~s   81 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLL--GDLGKKNCS   81 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEe--cCCCCCEEE
Confidence            357789999999999999875321      246899986421      00  00         122221  122233467


Q ss_pred             EEEcccCCCCCeEEEEEEEcC
Q psy2775          74 VTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      |+|.+++.+|+|.|.|.+...
T Consensus        82 L~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          82 LLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEccCChhhCeEEEEEEEcC
Confidence            999999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.08  E-value=3.2e-05  Score=63.91  Aligned_cols=77  Identities=18%  Similarity=0.252  Sum_probs=52.7

Q ss_pred             cCeEEEEEEEecCC-------CCceEEEeCC-----EEe----cCCCC--------eeEEee-----CCeEEEEEccCCC
Q psy2775         573 KGTIRLMAKVKASP-------APSIVWFRNN-----KPL----LSSPK--------KREIFD-----GENIILELKEADS  623 (785)
Q Consensus       573 g~~v~l~C~~~g~P-------~p~v~W~~~~-----~~i----~~~~~--------~~~~~~-----~~~~~L~i~~~~~  623 (785)
                      |+.++|.|...-.|       .+.|.|+|..     ..+    ..+..        -+..+.     .+..+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999976433       3589999841     111    01111        112221     2467899999999


Q ss_pred             CCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         624 ETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                       +|+|.|.|.+.......+..+.|.|.
T Consensus        82 -~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 -SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             -HHCEEEEEEEEECCcccEEEEEEEEE
Confidence             99999999999977667777777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.07  E-value=4.2e-05  Score=64.95  Aligned_cols=73  Identities=21%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             eeeeeeeeecCeEEEEEEEe-cCCCCceEEEeCCE-----Eec---C-----------CCCeeEEee--CCeEEEEEccC
Q psy2775         564 RFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNK-----PLL---S-----------SPKKREIFD--GENIILELKEA  621 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~-----~i~---~-----------~~~~~~~~~--~~~~~L~i~~~  621 (785)
                      .+....+.+|+.++|.|... ......+.|++...     .+.   .           ..+.....+  ...++|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            35577899999999999999 44556899999322     111   0           111222222  23678999999


Q ss_pred             CCCCCceeEEEEEEcC
Q psy2775         622 DSETDAGDYKVVATNE  637 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~  637 (785)
                      +. +|+|.|.|.+...
T Consensus        87 ~~-~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QP-SDSGTYFCQVSTS  101 (114)
T ss_dssp             SG-GGEEEEEEEEEES
T ss_pred             Cc-CcCEEEEEEEEEC
Confidence            99 9999999999987

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.07  E-value=3.6e-05  Score=63.09  Aligned_cols=74  Identities=23%  Similarity=0.284  Sum_probs=49.6

Q ss_pred             eEEEEEEEecCC---CCceEEEeCCE-----Eec----C-C--------CCeeEEe--eCCeEEEEEccCCCCCCceeEE
Q psy2775         575 TIRLMAKVKASP---APSIVWFRNNK-----PLL----S-S--------PKKREIF--DGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       575 ~v~l~C~~~g~P---~p~v~W~~~~~-----~i~----~-~--------~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      +++|.|.....+   ...|.|+|...     .+.    . +        +|.+...  ......|+|.+++. +|+|.|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~-sD~GtY~   80 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQ-ADEGKYK   80 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCcc-ccceEEE
Confidence            689999987544   23799999321     110    0 0        1212211  12356799999999 9999999


Q ss_pred             EEEEc-CCcceEEEEEEEE
Q psy2775         632 VVATN-ELGSATHGARVTV  649 (785)
Q Consensus       632 C~a~n-~~g~~~~~~~l~V  649 (785)
                      |.+.+ ..|..+..+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            99998 7787776666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.04  E-value=5.1e-05  Score=61.43  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=49.5

Q ss_pred             eEEEEEEEecC-CCC---ceEEEeCCE----Ee--cC---------CCCeeEEee---CCeEEEEEccCCCCCCceeEEE
Q psy2775         575 TIRLMAKVKAS-PAP---SIVWFRNNK----PL--LS---------SPKKREIFD---GENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       575 ~v~l~C~~~g~-P~p---~v~W~~~~~----~i--~~---------~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      .++|.|..... |..   .|.|.+...    .+  -.         .-+.++.+.   -+..+|.|.+++. +|.|.|+|
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~-~D~G~Y~C   80 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLEL-EDEGVYIC   80 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCcc-ccCEEEEE
Confidence            68999998843 222   599987321    11  00         000111111   1236799999999 99999999


Q ss_pred             EEEc-CCcceEEEEEEEE
Q psy2775         633 VATN-ELGSATHGARVTV  649 (785)
Q Consensus       633 ~a~n-~~g~~~~~~~l~V  649 (785)
                      .+.| ..|..+..+.|.|
T Consensus        81 ~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          81 EFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEeCCCCCeEEEEEEEE
Confidence            9999 7898888888776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.03  E-value=1.4e-05  Score=64.47  Aligned_cols=67  Identities=10%  Similarity=0.159  Sum_probs=48.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ...|.+|++|+|.|...- +.-.+.|+|+|..............+....|.|..++. +|+|.|.|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCc-ccCEEEEEEEE
Confidence            457889999999998764 55689999988753210000001123456799999999 99999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.01  E-value=2.3e-05  Score=65.28  Aligned_cols=70  Identities=16%  Similarity=0.285  Sum_probs=46.2

Q ss_pred             eEecCCCeEEEEEEEEec-CCCeeEEEECCEE---------c--cC-----------CCCEEEeecCCccceEEEEEEcc
Q psy2775          22 VYAEENSEVTLEVRLVAV-PEPDLLWYYNGEP---------L--QE-----------TDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        22 ~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~---------~--~~-----------~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      +.|++|++|+|.|.+.+. ....+.||+....         +  ..           ..++.+....+  .....|+|.+
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~--~~~~~L~I~~   78 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD--SSRYRLHINR   78 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC--CCEEEEEECC
Confidence            368999999999998653 3457999985431         0  00           11222211111  1235699999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy2775          79 IKKREEGVYTVVAKN   93 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~   93 (785)
                      ++.+|+|.|.|...+
T Consensus        79 ~~~~Dsg~YyCa~~~   93 (107)
T cd07700          79 VKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCHHHCEEEEEeEcC
Confidence            999999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.00  E-value=4.2e-05  Score=62.41  Aligned_cols=77  Identities=18%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             CCeEEEEEEEEecCC-CeeEEEECCEE----cc---C----------CCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          27 NSEVTLEVRLVAVPE-PDLLWYYNGEP----LQ---E----------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        27 G~~v~l~C~~~g~p~-~~i~W~~~~~~----~~---~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      |++|+|.|....... ..+.|++....    +.   .          .++..+. ..  ....+.|+|.+++.+|+|.|+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~--~~~~~sL~I~nv~~~D~G~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SL--GLNSTSITIWNVTLEDEGCYK   77 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CC--CCCccEEEEeCCceeeeEEEE
Confidence            899999999754333 36999985321    10   0          0111111 11  112367999999999999999


Q ss_pred             EEEEc-CCeeEEEEeeEEE
Q psy2775          89 VVAKN-REGEAKMDIPVKV  106 (785)
Q Consensus        89 C~a~~-~~~~~~~~~~v~v  106 (785)
                      |.+.. ..|.....+.|.|
T Consensus        78 C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          78 CIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEEEeCCCCCeeeEEEEEE
Confidence            99874 4555555666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.00  E-value=0.00033  Score=70.38  Aligned_cols=79  Identities=24%  Similarity=0.273  Sum_probs=53.5

Q ss_pred             EEEEccCCCCCcEEEEEEEeec--CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775         471 KLIIFSAGLEDAGEYSCRVGDT--GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP  548 (785)
Q Consensus       471 ~L~i~~~~~~d~G~Y~C~a~n~--g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  548 (785)
                      .|+|..+...++|.|+=+..+.  +.......++|..-      ..|.+.+.                            
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y------r~PsVsV~----------------------------  335 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY------KRPNITVI----------------------------  335 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe------cCCCcccc----------------------------
Confidence            5999999999999998665542  33333344443321      11222221                            


Q ss_pred             ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC--ceEEEeCCEEecC
Q psy2775         549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLLS  601 (785)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p--~v~W~~~~~~i~~  601 (785)
                                        ..-+.+|+...-.|.+..+ |+-  .++||+||.++..
T Consensus       336 ------------------p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~  373 (566)
T PHA03269        336 ------------------GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK  373 (566)
T ss_pred             ------------------CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence                              3357789999999999887 544  6899999998874

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.98  E-value=0.00079  Score=66.94  Aligned_cols=168  Identities=14%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCc
Q psy2775         165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD  244 (785)
Q Consensus       165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  244 (785)
                      ...|.|..++...+|.|+-+..+..+.......++|.-.                              .+|.+...  .
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y------------------------------r~Psvsv~--~  228 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF------------------------------RRPSLSIR--P  228 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe------------------------------cCCccccc--C
Confidence            346999999999999999998877765444444444422                              22333322  3


Q ss_pred             ceeCCCCeEEEEEEEccCCCC---eEEEEECCEEccc-ceE---EEe--C---CEEEEEEccCCCCC-CeEEEEEEEeCC
Q psy2775         245 VSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKD-RQI---TSE--K---NTHTLTLIQCSTKD-KGRYSVKVTNKE  311 (785)
Q Consensus       245 ~~~~~G~~~~l~C~~~g~p~~---~v~W~~~~~~l~~-~~~---~~~--~---~~~~l~i~~~~~~d-~G~Y~C~~~n~~  311 (785)
                      ..+.+|+.+.-.|.+..+.++   .+.||+||.++.. ..+   ...  +   ..++|++.....+. -=..+|.+.-..
T Consensus       229 ~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~r  308 (466)
T PHA03270        229 HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHR  308 (466)
T ss_pred             CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEcc
Confidence            346689999999999665433   6899999998851 111   111  1   13345444432221 236899998554


Q ss_pred             CceE-EEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCC
Q psy2775         312 GTVE-SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTS  369 (785)
Q Consensus       312 g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~  369 (785)
                      +... +.+.-.+  .|..+..+.-.+.+..|..+   |.+.-  ....+.|+.++......
T Consensus       309 d~vS~sR~nAa~--~P~VY~~P~Isv~F~dG~AV---CtA~CVPegV~l~W~V~D~~~pa~  364 (466)
T PHA03270        309 DSVSFSRRNATG--APTVLPRPTIEMEFGGDEAV---CTAACVPEGVTLAWLLGADPAPAE  364 (466)
T ss_pred             CCccceeecccc--cCccccCCeEEEEEeCCEEE---EeccccCCCCEEEEEecCCCCCCc
Confidence            3332 1221111  12222222222334444433   55543  36699999777655443

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.98  E-value=7.2e-05  Score=60.59  Aligned_cols=75  Identities=16%  Similarity=0.371  Sum_probs=49.7

Q ss_pred             eEEEEEEEEec-CC---CeeEEEECCE----Ec---c----------CCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          29 EVTLEVRLVAV-PE---PDLLWYYNGE----PL---Q----------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        29 ~v~l~C~~~g~-p~---~~i~W~~~~~----~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +|+|.|..... |.   ..|.|.+...    .+   .          -.+|+.+.. ...  ..++|+|.+++.+|+|.|
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~--~daSi~i~nl~~~D~G~Y   78 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSF--EDGTISLSRLELEDEGVY   78 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCC--CcceEEEcCCccccCEEE
Confidence            68999999643 22   2699987421    11   0          012333331 111  236799999999999999


Q ss_pred             EEEEEc-CCeeEEEEeeEEE
Q psy2775          88 TVVAKN-REGEAKMDIPVKV  106 (785)
Q Consensus        88 ~C~a~~-~~~~~~~~~~v~v  106 (785)
                      +|.+.+ ..|..+..+.|.|
T Consensus        79 ~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          79 ICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEEEeCCCCCeEEEEEEEE
Confidence            999998 6777777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.95  E-value=0.00012  Score=60.63  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +..+|.|.+++. +|+|.|.|.+.+.......+..|.|.
T Consensus        77 g~asL~i~~v~~-sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRA-SDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEccccc-ccCEEEEEEEEECCcccEEEEEEEEE
Confidence            457899999999 99999999999988888888888776

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.94  E-value=8.6e-05  Score=56.73  Aligned_cols=77  Identities=12%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             ceEecCCCeEEEEEEEEecC--CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775          21 PVYAEENSEVTLEVRLVAVP--EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA   98 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~   98 (785)
                      .-.+..|++++|+|.....+  .+.|+|+..+...-     .....++     .+|.+..+...|+|.++|.+.......
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~-----ktL~~~qv~~qdSG~WtC~V~~~~k~~   77 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDK-----KTLNLVQLGPNDSGTWDCIVSVNSSEK   77 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCc-----cEEEeceeCcccCCEEEEEEEECceEE
Confidence            45788999999999985433  45999997554321     1111111     359999999999999999998766555


Q ss_pred             EEEeeEEEe
Q psy2775          99 KMDIPVKVN  107 (785)
Q Consensus        99 ~~~~~v~v~  107 (785)
                      ...+.|.|.
T Consensus        78 ~~~~~V~Vl   86 (88)
T cd07694          78 TLKLDIKVL   86 (88)
T ss_pred             EEEeeEEEE
Confidence            666666554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.93  E-value=5.3e-05  Score=62.13  Aligned_cols=70  Identities=13%  Similarity=0.107  Sum_probs=49.7

Q ss_pred             eeeeecCeEEEEEEEec-CCCCceEEEeCCEE-----e--------cCCCCeeEEe--eCCeEEEEEccCCCCCCceeEE
Q psy2775         568 KTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKP-----L--------LSSPKKREIF--DGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~-----i--------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      +.+.+|++++|.|.... .+...+.|+|....     +        ....+..+..  .++.+.|+|.+++. +|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence            36789999999999875 35557999995421     1        0112333321  24567899999999 9999999


Q ss_pred             EEEEcCC
Q psy2775         632 VVATNEL  638 (785)
Q Consensus       632 C~a~n~~  638 (785)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9998753

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.92  E-value=8.2e-05  Score=59.59  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             CeEEEEEEEEecC-CCeeEEEECCE----Ecc-------------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          28 SEVTLEVRLVAVP-EPDLLWYYNGE----PLQ-------------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        28 ~~v~l~C~~~g~p-~~~i~W~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ++++|.|.....+ ...|.|.|...    .+.             -.+|..+.. .+  ...++|+|.+++.+|+|.|+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~-~~--~~d~sl~i~nv~~~D~G~Y~C   77 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN-YS--LLDATIMLENVGFSDIGVYIC   77 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC-CC--CCccEEEEeCCCccccEEEEE
Confidence            4799999986432 34789988421    111             012444431 11  123679999999999999999


Q ss_pred             EEE-cCCeeEEEEeeEEE
Q psy2775          90 VAK-NREGEAKMDIPVKV  106 (785)
Q Consensus        90 ~a~-~~~~~~~~~~~v~v  106 (785)
                      .+. ...|+......|.|
T Consensus        78 ~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          78 KAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEEeCCCCCeeEEEEEEE
Confidence            985 56777777777766

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.92  E-value=7.4e-05  Score=60.96  Aligned_cols=76  Identities=17%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             cCeEEEEEEEecCCCC-ceEEEeCCE----Eec-----CC----CCe--eEE---eeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         573 KGTIRLMAKVKASPAP-SIVWFRNNK----PLL-----SS----PKK--REI---FDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p-~v~W~~~~~----~i~-----~~----~~~--~~~---~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      |++++|.|........ .|.|+|...    .+.     .+    ..+  +..   ......+|+|.+++. +|+|.|.|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence            7899999997654333 699998432    110     00    000  111   123457899999999 999999999


Q ss_pred             EE-cCCcceEEEEEEEE
Q psy2775         634 AT-NELGSATHGARVTV  649 (785)
Q Consensus       634 a~-n~~g~~~~~~~l~V  649 (785)
                      .. ...|.....+-|.|
T Consensus        80 ~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEeCCCCCeeeEEEEEE
Confidence            77 56787777777766

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.92  E-value=9.1e-05  Score=59.34  Aligned_cols=75  Identities=23%  Similarity=0.310  Sum_probs=51.0

Q ss_pred             CeEEEEEEEecCCCC-ceEEEeCC----EEec-----CC----CC--eeEEe---eCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         574 GTIRLMAKVKASPAP-SIVWFRNN----KPLL-----SS----PK--KREIF---DGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       574 ~~v~l~C~~~g~P~p-~v~W~~~~----~~i~-----~~----~~--~~~~~---~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +.++|.|.....+.. .|+|.|..    ..+.     .+    ..  .++.+   .....+|.|.+++. +|+|.|+|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEE
Confidence            368999998754433 79998842    1221     00    00  11112   22356899999999 9999999996


Q ss_pred             -EcCCcceEEEEEEEE
Q psy2775         635 -TNELGSATHGARVTV  649 (785)
Q Consensus       635 -~n~~g~~~~~~~l~V  649 (785)
                       ..+.|+.+.+..|.|
T Consensus        80 ~tfP~G~~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCCCeeEEEEEEE
Confidence             578899998888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.92  E-value=9.2e-05  Score=56.59  Aligned_cols=75  Identities=11%  Similarity=0.211  Sum_probs=52.9

Q ss_pred             eeeeeecCeEEEEEEEecCC--CCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASP--APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      +..+..|+.++|+|.....+  .++|+|+..+......      ...+..+|.+..+.. .|+|..+|.++-+.  .+..
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~------~~~~~ktL~~~qv~~-qdSG~WtC~V~~~~--k~~~   78 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI------LNQDKKTLNLVQLGP-NDSGTWDCIVSVNS--SEKT   78 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee------ccCCccEEEeceeCc-ccCCEEEEEEEECc--eEEE
Confidence            34678899999999996644  4599999855543211      123455799999999 99999999998553  3334


Q ss_pred             EEEEEE
Q psy2775         645 ARVTVD  650 (785)
Q Consensus       645 ~~l~V~  650 (785)
                      +.+.|.
T Consensus        79 ~~~~V~   84 (88)
T cd07694          79 LKLDIK   84 (88)
T ss_pred             EEeeEE
Confidence            444444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.92  E-value=3.7e-05  Score=62.72  Aligned_cols=85  Identities=15%  Similarity=0.189  Sum_probs=59.5

Q ss_pred             CCeee-ecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFS-KKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~-~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ||.+. -.|.......++.++|.|.+.|. | ...|.|++||..+.....  ......++.+...+.|++......+...
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~   80 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV   80 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            34443 34555566678899999999886 4 468899999998854311  1122335566666788887777667889


Q ss_pred             EEEEEEcCCe
Q psy2775          87 YTVVAKNREG   96 (785)
Q Consensus        87 Y~C~a~~~~~   96 (785)
                      |+|.|.+...
T Consensus        81 ~sC~V~H~~l   90 (100)
T cd07699          81 YTCEVTHEGL   90 (100)
T ss_pred             EEEEEEecCC
Confidence            9999998654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.90  E-value=5e-05  Score=64.53  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=51.3

Q ss_pred             eeeeeeeecCeEEEEEEEecC-CCCceEEEeCC--EE---e---------cCCCCeeEEe--eCCeEEEEEccCCCCCCc
Q psy2775         565 FEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN--KP---L---------LSSPKKREIF--DGENIILELKEADSETDA  627 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~--~~---i---------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~  627 (785)
                      +..+.+.+|++|+|.|...+. ....+.|||..  ..   +         ...+++.+..  ....++|+|.++.. +|+
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-~Ds   84 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL-EDS   84 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-HHC
Confidence            346689999999999998764 45579999832  11   1         0123333332  34567899999999 999


Q ss_pred             eeEEEEEEcC
Q psy2775         628 GDYKVVATNE  637 (785)
Q Consensus       628 G~Y~C~a~n~  637 (785)
                      |.|.|.+...
T Consensus        85 g~Y~C~~~~~   94 (116)
T cd07706          85 AKYFCALSTL   94 (116)
T ss_pred             EEEEEEEECC
Confidence            9999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00096 Ig Immunoglobulin domain

Probab=97.90  E-value=9.5e-05  Score=56.24  Aligned_cols=66  Identities=30%  Similarity=0.445  Sum_probs=48.7

Q ss_pred             EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      +.|.|.+.+.+...+.|++++.......................|.|.+++.+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            478999988777899999998766443322112223334455779999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.90  E-value=0.00011  Score=56.41  Aligned_cols=67  Identities=15%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             eEEEEEEEEec-CC-CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          29 EVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        29 ~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      .++|.|.+.|. |. ..+.|+++++.+......  .....++.....+.|.|.....++...|+|.|.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            37899999887 44 689999999875433111  112345556666788887777788899999998764

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.89  E-value=9.2e-05  Score=59.34  Aligned_cols=80  Identities=10%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +|.......++.++|.|.+.|. |. ..|+|++++..+.....  ......++.+...+.|++......+...|.|.|.+
T Consensus         5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H   84 (94)
T cd05847           5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTH   84 (94)
T ss_pred             CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEE
Confidence            3444443456779999999986 44 68899999998643211  11223344566677888886666677899999998


Q ss_pred             CCee
Q psy2775          94 REGE   97 (785)
Q Consensus        94 ~~~~   97 (785)
                      ....
T Consensus        85 ~~~~   88 (94)
T cd05847          85 QGTT   88 (94)
T ss_pred             CCee
Confidence            7654

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.89  E-value=0.00011  Score=59.29  Aligned_cols=79  Identities=14%  Similarity=0.283  Sum_probs=50.7

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ||.+...+....   |+.++|.|.+.|. |. ..++|++++..+.....  -.....++.....+.|+|..   +|.+.|
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~y   75 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARY   75 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEE
Confidence            566654443332   7889999999997 44 48999999964332211  12223344444456676655   388999


Q ss_pred             EEEEEcCCe
Q psy2775          88 TVVAKNREG   96 (785)
Q Consensus        88 ~C~a~~~~~   96 (785)
                      +|.+.+...
T Consensus        76 tC~V~H~~~   84 (93)
T cd07698          76 SCRVEHSGL   84 (93)
T ss_pred             EEEEEeCCC
Confidence            999998654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.89  E-value=0.00012  Score=60.74  Aligned_cols=70  Identities=11%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             eeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCeeEEeeCC------eEEEEEccCCCCCCcee-EEEEEEcCCc
Q psy2775         569 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGD-YKVVATNELG  639 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~-Y~C~a~n~~g  639 (785)
                      ....|+.++|.|.+.|+ |+ ..++|+|||+++..... ....+++      .+.|.+.. .. .|.|. |+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~-~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TE-DDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-cc-ccccCceEEEEEeCCC
Confidence            45578889999999986 75 58999999999864322 2222221      23455554 33 45554 9999999764


Q ss_pred             ce
Q psy2775         640 SA  641 (785)
Q Consensus       640 ~~  641 (785)
                      ..
T Consensus        94 ~~   95 (111)
T cd05772          94 QA   95 (111)
T ss_pred             CC
Confidence            43

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.86  E-value=4.8e-05  Score=61.23  Aligned_cols=79  Identities=11%  Similarity=0.100  Sum_probs=53.2

Q ss_pred             cCCceEecCCCeEEEEEEEEec--CC-CeeEEEECCEEc-cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV--PE-PDLLWYYNGEPL-QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~--p~-~~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +|....+..|+.++|.|.+.|.  |+ ..++|++++... ...........++.+...+.|.+..-...+.-.|.|.+.+
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            4555567789999999999998  43 578999987432 2211122333444555567788876555556689999998


Q ss_pred             CCe
Q psy2775          94 REG   96 (785)
Q Consensus        94 ~~~   96 (785)
                      ...
T Consensus        85 ~~l   87 (96)
T cd07696          85 PDL   87 (96)
T ss_pred             CCC
Confidence            764

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.86  E-value=6.4e-05  Score=61.46  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=53.8

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEECCEEccCCCCE--EEeec---CCccceEEEEEEcccCCCCCeEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEV--VFSDQ---SDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~--~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      .-+|....+..|+.++|.|.+.|..+  ..+.|++++..+......  ....+   ++.+...+.|.|..-...+...|+
T Consensus         5 l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt   84 (102)
T cd05768           5 VLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT   84 (102)
T ss_pred             EeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence            33445555566889999999999743  467999999987543211  11111   344555677888655445667899


Q ss_pred             EEEEcCCe
Q psy2775          89 VVAKNREG   96 (785)
Q Consensus        89 C~a~~~~~   96 (785)
                      |.|.+...
T Consensus        85 C~V~H~~l   92 (102)
T cd05768          85 CVVGHEAL   92 (102)
T ss_pred             EEeEeCCC
Confidence            99998654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.86  E-value=7e-05  Score=63.35  Aligned_cols=75  Identities=8%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECCE---E--c---cC-----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNGE---P--L---QE-----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~---~--~---~~-----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|....+.+|++|+|.|...+..  ...+.||+...   +  |   ..           .+++....+..  .....|+
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~--~~~~~L~   79 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTS--KSTVYLQ   79 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEcc--CCEEEEE
Confidence            357788999999999999976432  35699998532   1  1   00           01222211111  1224699


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|+|.|.|.+..
T Consensus        80 I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          80 LNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             ECCCCHHHCEEEEEEEEc
Confidence            999999999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.86  E-value=4.5e-05  Score=63.01  Aligned_cols=69  Identities=22%  Similarity=0.347  Sum_probs=45.4

Q ss_pred             EecCCCeEEEEEEEEecCCCeeEEEECCEE-------c---cCCCC----------EEEeecCCccceEEEEEEcccCCC
Q psy2775          23 YAEENSEVTLEVRLVAVPEPDLLWYYNGEP-------L---QETDE----------VVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        23 ~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~-------~---~~~~~----------~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      .+++|++|+|.|.+.......+.||+....       |   .....          .++.....  .....|+|.+++.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~s   79 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS--SNSFVLTLKNFQKE   79 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec--CCEEEEEECCCCHH
Confidence            478999999999986554567999986421       1   00000          11111111  12356999999999


Q ss_pred             CCeEEEEEEEc
Q psy2775          83 EEGVYTVVAKN   93 (785)
Q Consensus        83 D~G~Y~C~a~~   93 (785)
                      |+|.|.|.+.+
T Consensus        80 DsgtY~Ca~~~   90 (104)
T cd05720          80 NEGYYFCSVAS   90 (104)
T ss_pred             HCEEEEEEEcc
Confidence            99999999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.85  E-value=0.0037  Score=61.80  Aligned_cols=173  Identities=18%  Similarity=0.205  Sum_probs=102.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEE--------------CCEEc-----------------------
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY--------------NGEPL-----------------------   53 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~--------------~~~~~-----------------------   53 (785)
                      .-|.|.-....+.|..+++-.|.|+..-.|+..-.|-.              |.+.+                       
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (490)
T PHA03271         93 KMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRPSE  172 (490)
T ss_pred             cCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCHHH
Confidence            34666667778889999999999998777776666631              11100                       


Q ss_pred             ------------------cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE--EEEeeEEEeCCCCCC
Q psy2775          54 ------------------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA--KMDIPVKVNTGKPEK  113 (785)
Q Consensus        54 ------------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~--~~~~~v~v~~~~~~~  113 (785)
                                        ..++++-+......+.  -.|.|.++...|+|.|+-...+.....  .....+.+..   .+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~--m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---RP  247 (490)
T PHA03271        173 LISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNT--MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---RP  247 (490)
T ss_pred             HhHHhhcCCCCccccCCCCCCceeEEeeccccce--eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---cC
Confidence                              0111222323332333  349999999999997765555433322  2333344442   45


Q ss_pred             CceecCCCceEeccCCcEEEEEEEeccCCC---eEEEeECCEEcccceEE------EeC-----CEEEEEEcccCCCCcE
Q psy2775         114 PSILEPLHDVSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKDRQIT------SEK-----NTHTLTLIQCSTKDKG  179 (785)
Q Consensus       114 p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~---~v~W~~~g~~~~~~~~~------~~~-----~~~~L~i~~~~~~d~G  179 (785)
                      |.+...+  ..+..|+...-.|.+..+-++   .++||+||.++......      .++     ..++|.+.+...+.--
T Consensus       248 PsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PP  325 (490)
T PHA03271        248 ASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPP  325 (490)
T ss_pred             CCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCC
Confidence            5554433  346789999999999775443   79999999887543211      111     1234444443323334


Q ss_pred             EEEEEEEcCCe
Q psy2775         180 RYSVKVTNKEG  190 (785)
Q Consensus       180 ~Y~C~a~n~~g  190 (785)
                      ..+|.+.-..+
T Consensus       326 sLRCeV~W~rd  336 (490)
T PHA03271        326 KISCLVAWKQG  336 (490)
T ss_pred             CceEEEEEccC
Confidence            78999875444

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.85  E-value=0.00012  Score=64.55  Aligned_cols=84  Identities=21%  Similarity=0.375  Sum_probs=62.6

Q ss_pred             CeEEecCCcEEEEEEEe-C-CCceEEEEECCEEc----------cc--CCCEE-EEEeCcEEEEEEccCCCCCcEEEEEE
Q psy2775         424 DVKVSRDEKASFEIELT-K-GDALVKWYKDGKEI----------AF--SENVT-LSIDGKKQKLIIFSAGLEDAGEYSCR  488 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~-~-~~~~i~W~~~~~~~----------~~--~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~  488 (785)
                      .+.+.+|++++|.|... + ..+.+.|+|..+.+          ..  .++.. ++..-..+.|+|.+++.+|+|.|+|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            45688999999999985 4 46789999964322          11  12343 23333467899999999999999999


Q ss_pred             Eeec--C-cceeEEEEEEEcCc
Q psy2775         489 VGDT--G-DKESKATLTVEAPA  507 (785)
Q Consensus       489 a~n~--g-~~~~~~~l~V~~~~  507 (785)
                      ..--  | ..+..+-|+|....
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEecCCCCCceeEEEEEEEchh
Confidence            9863  6 77888999998764

>cd00096 Ig Immunoglobulin domain

Probab=97.84  E-value=7.9e-05  Score=56.70  Aligned_cols=63  Identities=30%  Similarity=0.518  Sum_probs=47.8

Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCe----eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKK----REIFDGENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~----~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ++|.|.+.+.|.+.+.|++++.........    ..........|.|.++.. +|.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCcC
Confidence            479999999777899999988776443211    111234556799999998 999999999998763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.83  E-value=5.8e-05  Score=62.88  Aligned_cols=67  Identities=19%  Similarity=0.308  Sum_probs=46.8

Q ss_pred             eeeecCeEEEEEEEecCC-CCceEEEeCCEE---------e--cC-----------CCCeeEE--eeCCeEEEEEccCCC
Q psy2775         569 TVKEKGTIRLMAKVKASP-APSIVWFRNNKP---------L--LS-----------SPKKREI--FDGENIILELKEADS  623 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~---------i--~~-----------~~~~~~~--~~~~~~~L~i~~~~~  623 (785)
                      .+.+|++++|.|.+.+.. ...+.|||....         +  ..           ..++...  ..+..+.|+|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            478899999999998753 447999984321         0  00           1233221  223457899999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|+|.|.|...+
T Consensus        82 -~Dsg~YyCa~~~   93 (107)
T cd07700          82 -EDSGTYFCMTVG   93 (107)
T ss_pred             -HHCEEEEEeEcC
Confidence             999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.81  E-value=0.00011  Score=56.51  Aligned_cols=63  Identities=17%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             eEEEEEEEecC-CC-CceEEEeCCEEecCCCCee-EEee-CCe----EEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         575 TIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR-EIFD-GEN----IILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       575 ~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~-~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      +++|.|.+.|+ |+ ..++|+|||+++..+.... ...+ ++.    +.|.|..... ++...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence            47899999997 66 5899999999754432211 1221 222    3466655555 67788999998764

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.80  E-value=0.00016  Score=57.59  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=44.0

Q ss_pred             eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEee-CCeEE-EEEccCCCCCCceeEEEEEEcCCc
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFD-GENII-LELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~-~~~~~-L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      +..|...+|.|.|.|+ |+. .++|+|||+++. +.... ...+ ++.+. ...-.+.. .+...|+|.+.....
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~~l   84 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHNSM   84 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEECCC
Confidence            3457778999999996 654 899999999986 43222 2222 22221 11223345 677889999998643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.78  E-value=0.00014  Score=60.51  Aligned_cols=89  Identities=16%  Similarity=0.243  Sum_probs=59.9

Q ss_pred             CCeee-ecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC---EEEeecCCccceEEEEEEcccCCCC-C
Q psy2775          12 PPTFS-KKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE---VVFSDQSDMHSYVSIVTIKSIKKRE-E   84 (785)
Q Consensus        12 ~p~~~-~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D-~   84 (785)
                      ||.+. -.|....+.+++.++|.|.+.|+ |. ..+.|++|+..+.....   ......++.+...+.|+|...+..| .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            34443 34555666678889999999887 44 58899999998765422   1222222455566788888665544 6


Q ss_pred             eEEEEEEEcCCeeEEE
Q psy2775          85 GVYTVVAKNREGEAKM  100 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~~  100 (785)
                      ..|+|.+.+.......
T Consensus        82 ~~ytC~V~H~g~~~~~   97 (115)
T cd05769          82 NTFTCIVQFYGGTDTD   97 (115)
T ss_pred             CeEEEEEEEeCCccce
Confidence            7999999987654443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.78  E-value=0.0017  Score=65.34  Aligned_cols=79  Identities=23%  Similarity=0.301  Sum_probs=54.4

Q ss_pred             EEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775         470 QKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP  548 (785)
Q Consensus       470 ~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  548 (785)
                      ..|+|..++...+|.|+=...+. +.......++|.--      ..|.+.+.                            
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y------r~Psvsv~----------------------------  243 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY------NAPLVDLS----------------------------  243 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe------cCCccccc----------------------------
Confidence            45999999999999998665454 43344444444221      11222221                            


Q ss_pred             ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC--ceEEEeCCEEec
Q psy2775         549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLL  600 (785)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p--~v~W~~~~~~i~  600 (785)
                                        ...+.+|+...-.|.+..+ |+-  .+.||+||.++.
T Consensus       244 ------------------~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~  280 (486)
T PHA03273        244 ------------------VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD  280 (486)
T ss_pred             ------------------CCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence                              3357789999999999886 544  699999999987

>KOG0613|consensus

Probab=97.78  E-value=0.00016  Score=81.82  Aligned_cols=239  Identities=12%  Similarity=0.051  Sum_probs=142.0

Q ss_pred             ccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-Cccee
Q psy2775         420 VPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKES  497 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~  497 (785)
                      ..+..-....+....|.|.+.. ..+.+.|+.+.-.....       ..+...+.+.+....+.+.|+|...+. +....
T Consensus       234 ~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~  306 (1205)
T KOG0613|consen  234 SAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRF  306 (1205)
T ss_pred             CccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccce
Confidence            3344444567888889999987 35666676654332211       112236778888888899999999886 33333


Q ss_pred             EEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEE
Q psy2775         498 KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR  577 (785)
Q Consensus       498 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~  577 (785)
                      .+.-.+......   ..|...          ....+                    ..-..|.+......+....+..++
T Consensus       307 ~v~~~~~i~~~~---~~p~~~----------~~aaa--------------------~~~~~~v~~~~~~~v~a~d~~~v~  353 (1205)
T KOG0613|consen  307 KVTEEAPIGKGK---PGPESL----------QAAAA--------------------RPPEVPVGLVRNLSVTARDNTLVE  353 (1205)
T ss_pred             eeeEEeeccccc---cCchhh----------hhhcc--------------------CCccccccccccceeccccCccee
Confidence            333332221100   000000          00000                    000123344444566778889999


Q ss_pred             EEEEEecCCCCc-eEEEeCCEEecCCCCeeEEe--eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeecc
Q psy2775         578 LMAKVKASPAPS-IVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV  654 (785)
Q Consensus       578 l~C~~~g~P~p~-v~W~~~~~~i~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  654 (785)
                      +.|...|.+.|. +.||+++.....+....+.+  ......+.|..+.. .+.+.|.|.|.|..|.........|.....
T Consensus       354 m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~-~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~  432 (1205)
T KOG0613|consen  354 MPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP-GEGYFTRVPAVNKGGTEQTIAESTVSEEMP  432 (1205)
T ss_pred             ecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc-ccccccccceeccCCcccccchhhcccccC
Confidence            999999999885 99999887765544322222  23345688999998 999999999999999877666655553221


Q ss_pred             CCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECC
Q psy2775         655 GRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNG  732 (785)
Q Consensus       655 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~  732 (785)
                      +                                   ..++.+............-+.+.+.|...++|.|  .++|++++
T Consensus       433 g-----------------------------------t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~  477 (1205)
T KOG0613|consen  433 G-----------------------------------TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDG  477 (1205)
T ss_pred             C-----------------------------------CCCccccccccccccccCCcccccccCCCCccccceeEeeccCC
Confidence            1                                   1223332211111223334789999999998866  34456555


Q ss_pred             EE
Q psy2775         733 TV  734 (785)
Q Consensus       733 ~~  734 (785)
                      -.
T Consensus       478 ~~  479 (1205)
T KOG0613|consen  478 LP  479 (1205)
T ss_pred             cc
Confidence            43

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.77  E-value=7.9e-05  Score=61.58  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=47.1

Q ss_pred             eeeecCeEEEEEEEecCCCCceEEEeCCEE-------ec---C------------CCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKP-------LL---S------------SPKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~-------i~---~------------~~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                      .+.+|++|+|.|.+.+.-...+.|||....       |.   .            ..++..........|+|.+++. +|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK-EN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH-HH
Confidence            467899999999987654557999994321       10   0            1112222334667899999999 99


Q ss_pred             ceeEEEEEEc
Q psy2775         627 AGDYKVVATN  636 (785)
Q Consensus       627 ~G~Y~C~a~n  636 (785)
                      +|+|.|.+.+
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.77  E-value=0.0021  Score=64.71  Aligned_cols=162  Identities=16%  Similarity=0.213  Sum_probs=93.5

Q ss_pred             EEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcc
Q psy2775         166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV  245 (785)
Q Consensus       166 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  245 (785)
                      ..|+|..++..++|.|+-+..+..+.......++|.-.                              .+|.+...  ..
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y------------------------------r~Psvsv~--~~  245 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY------------------------------NAPLVDLS--VH  245 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe------------------------------cCCccccc--CC
Confidence            46999999999999999887676665555556666422                              22333222  33


Q ss_pred             eeCCCCeEEEEEEEccCCCC---eEEEEECCEEcc-cceE----E-Ee----CCEEEEEEccCCC-CCCeEEEEEEEeCC
Q psy2775         246 SITEGESAVLSVQVGGEPSP---KVEWYKDGKLIK-DRQI----T-SE----KNTHTLTLIQCST-KDKGRYSVKVTNKE  311 (785)
Q Consensus       246 ~~~~G~~~~l~C~~~g~p~~---~v~W~~~~~~l~-~~~~----~-~~----~~~~~l~i~~~~~-~d~G~Y~C~~~n~~  311 (785)
                      .+.+|+...-.|.+..+-++   .+.|++||.++. ...+    . ..    ...++|++..... +.-=..+|.+.-..
T Consensus       246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r  325 (486)
T PHA03273        246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR  325 (486)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence            46789999999999665433   789999999887 2211    1 11    1234555555322 33456899998554


Q ss_pred             CceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-C--CCeEEEEECC
Q psy2775         312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-D--KADVKWFKDG  363 (785)
Q Consensus       312 g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~--~~~v~W~~~~  363 (785)
                      +..+ ..++.-...|..+..+.-.+.+..|..   .|.+.- |  ...+.|+.++
T Consensus       326 d~vS-~~RfsAt~~P~Vy~~P~Is~~F~~G~A---VCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        326 DEVS-FARIAKAGTPSVFVAPTVSVTVEDGDA---VCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             CCcc-eeeccccccCccccCCeEEEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence            4332 111111111222222222333444443   366554 2  5789998766

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.77  E-value=0.0063  Score=60.24  Aligned_cols=201  Identities=18%  Similarity=0.218  Sum_probs=120.1

Q ss_pred             EEEEcCCCCCCceEEEEEEecc------ceEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC--C--CceEEEEEC
Q psy2775         382 KLLIRNISVHDEGEYTCSLPDQ------ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK--G--DALVKWYKD  451 (785)
Q Consensus       382 ~l~i~~~~~~d~G~Y~C~a~n~------~~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~--~~~i~W~~~  451 (785)
                      .|.|.++...++|.|.-...+.      .....+.+...||.+...+.  .+..|+...-.|.+..  |  ...++|+.|
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            4899999999999665444432      22334445566776665443  3678999999999987  2  335999999


Q ss_pred             CEEcccCCCEEEE---E---eCc--EEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEec
Q psy2775         452 GKEIAFSENVTLS---I---DGK--KQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPH  522 (785)
Q Consensus       452 ~~~~~~~~~~~~~---~---~~~--~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  522 (785)
                      |.++.........   .   ++.  .++|++.+...+..-..+|.+.=. +......    ...........|.+.+.-+
T Consensus       286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r----nAaatP~VY~~P~ISv~Fe  361 (490)
T PHA03271        286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT----NATAIPTVYHHPRISLAFK  361 (490)
T ss_pred             CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee----ecccCCccccCCeEEEEEe
Confidence            9987554322111   1   122  334444443333334799998743 2122221    2222223445678888878


Q ss_pred             cCceeEEEEecCCceeeEEeecccccccCC-----CCC-CCCCeEeeeeeeeeee-ecCeEEEEEEEecCCCC
Q psy2775         523 LGDATFQVELSSPDIQVKWLNLFIVPTCPL-----GSP-GQAPLFIERFEEKTVK-EKGTIRLMAKVKASPAP  588 (785)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-----~~~-~~~p~~~~~~~~~~v~-~g~~v~l~C~~~g~P~p  588 (785)
                      ++.+..+...-.+.+.++|..++....-..     ... ...|.+....+...+. .+++++-+|...|+|.+
T Consensus       362 dG~AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~GYP~~  434 (490)
T PHA03271        362 DGYAICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIGYPFD  434 (490)
T ss_pred             CCEEEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEeecCCC
Confidence            887776666656799999997775421111     111 1124444333333343 45789999999999875

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.75  E-value=0.00013  Score=58.50  Aligned_cols=68  Identities=18%  Similarity=0.297  Sum_probs=44.2

Q ss_pred             cCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEe-eCC----eEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         573 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIF-DGE----NIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       573 g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      |+.+.|+|.+ .|+|+|.|+|+.++..+.......... .++    .++|.+..-.. ++...++|.|.|.....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~-~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTRE-DHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGG-GTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChH-HCCeEEEEEEECCccCC
Confidence            6799999976 567999999999998872111111111 111    24577765444 56777999999986544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.74  E-value=0.0002  Score=57.72  Aligned_cols=66  Identities=12%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             cCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe-eEEee-CCeE-EEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         573 KGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFD-GENI-ILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       573 g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~-~~~~~-~~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      |+.++|.|.+.|+ |++ .++|+++|+.+..+... ....+ ++.+ ......+.. .+.+.|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCCC
Confidence            7889999999996 665 89999999744333211 12222 2222 222333445 678999999998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.71  E-value=0.00014  Score=58.33  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=45.2

Q ss_pred             ecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCC-ee-EEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         572 EKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK-KR-EIFDGEN----IILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~-~~-~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      .++.++|.|.|.|+ |. ..|+|+|||+.+..+.. .. ....++.    +.|.+..-.- .+...|+|.+.+...+...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w-~~~~~ytC~V~H~~~~~~~   91 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW-KSGKTYTCKVTHQGTTFED   91 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHh-cCCCeEEEEEEECCeeeee
Confidence            45679999999996 76 48999999998743321 11 1122333    2455543322 3567899999998665443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.70  E-value=0.0046  Score=62.47  Aligned_cols=202  Identities=17%  Similarity=0.167  Sum_probs=112.1

Q ss_pred             EEEcCCCCCCceEEEEEEeccc-----eEEEEEEE-ecCCcccccCCCeEEecCCcEEEEEEEeC--C--CceEEEEECC
Q psy2775         383 LLIRNISVHDEGEYTCSLPDQE-----TSAELNVV-ELPPEISVPLQDVKVSRDEKASFEIELTK--G--DALVKWYKDG  452 (785)
Q Consensus       383 l~i~~~~~~d~G~Y~C~a~n~~-----~~~~~~v~-~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~--~~~i~W~~~~  452 (785)
                      |.|.+++..++|.|+-...+..     .+..+.|. ..+|.+..  ....+.+|+...-.|.+..  |  ...++|+.|+
T Consensus       291 L~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV--~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng  368 (566)
T PHA03269        291 LHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITV--IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNF  368 (566)
T ss_pred             eEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccc--cCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            9999999999999987765321     22333332 23444433  3334779999999999987  2  3369999999


Q ss_pred             EEcccCC---CEEEEEeCc---EEEEEEccCCCCC--cEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccC
Q psy2775         453 KEIAFSE---NVTLSIDGK---KQKLIIFSAGLED--AGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG  524 (785)
Q Consensus       453 ~~~~~~~---~~~~~~~~~---~~~L~i~~~~~~d--~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  524 (785)
                      .++....   ......+|.   .++|++......|  --..+|.+.=.....+...+.-.+.  ......|.+.+.-+++
T Consensus       369 ~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaat--P~VY~~PtISm~FedG  446 (566)
T PHA03269        369 GNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVT--PDVYPFPNVSIEIIDG  446 (566)
T ss_pred             cccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccC--CccccCCeEEEEEeCC
Confidence            8886421   222233342   3445442222222  3457999873211111111111111  1223456777776677


Q ss_pred             ceeEEEEecC-CceeeEEeeccccccc----CCCCCCCCCeEeeeeeeeeee-ecCeEEEEEEEecCCCC
Q psy2775         525 DATFQVELSS-PDIQVKWLNLFIVPTC----PLGSPGQAPLFIERFEEKTVK-EKGTIRLMAKVKASPAP  588 (785)
Q Consensus       525 ~~~~~~~~~~-~~~~~~W~~~~~~~~~----~~~~~~~~p~~~~~~~~~~v~-~g~~v~l~C~~~g~P~p  588 (785)
                      .+..+...-. ..+.++|..++....-    ..+.-...|.+....+..-+. .++.++-+|...|+|..
T Consensus       447 ~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~GYP~~  516 (566)
T PHA03269        447 HIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDGYPKK  516 (566)
T ss_pred             EEEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEeecCCC
Confidence            6665555433 4569999977754110    000001123343322222222 23689999999999875

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.69  E-value=8.8e-05  Score=60.53  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=45.9

Q ss_pred             eeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCe-eEEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         569 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK-REIFD-GEN----IILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~-~~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ....++.++|.|.+.|+ |. ..|+|++||+++..+... ....+ ++.    +.|.+..-.. ++...|+|.+.+....
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~~sC~V~H~~l~   91 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW-NKHKVYTCEVTHEGLS   91 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEecCCC
Confidence            34467889999999995 74 489999999998543211 11222 332    2455544333 3467799999987543

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.68  E-value=0.00037  Score=55.79  Aligned_cols=65  Identities=14%  Similarity=0.191  Sum_probs=42.8

Q ss_pred             eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe-eEEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFD-GEN----IILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~-~~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ..|+..+|.|.|.|+ |.. .++|+|||.++..+... ....+ ++.    ..|.+.   . ++...|+|.+.....
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~-~~~~~ytC~V~H~~l   85 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---P-EEGDIYSCIVEHWGL   85 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---C-CCCCeEEEEEEeCCC
Confidence            446778999999996 764 89999999998654221 11222 222    234443   3 556689999998643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.68  E-value=0.00017  Score=56.78  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             CCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEE--EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          26 ENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVV--FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        26 ~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      .++.++|.|.+.|. |. ..|.|++++..+.......  ....++.+...+.|.+.   ..+...|+|.+.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            38999999999886 43 4799999999886654332  22456666667778887   5566699999998754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>KOG1480|consensus

Probab=97.68  E-value=1.2e-05  Score=84.87  Aligned_cols=186  Identities=20%  Similarity=0.301  Sum_probs=109.5

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCc---cceEEEEEEcccCCCCCe--
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM---HSYVSIVTIKSIKKREEG--   85 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~D~G--   85 (785)
                      .-|.|+..|.+..+..|.++.|.|.+.  |.+.|...-+...+..+....+...+..   ........|...+.++.|  
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~  100 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKAN--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGP  100 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCC--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCc
Confidence            558999999999999999999999974  3333432223322222222222111110   000111233333333322  


Q ss_pred             -EEE--EEEEcCCeeEEEE-eeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccceEE
Q psy2775          86 -VYT--VVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQIT  160 (785)
Q Consensus        86 -~Y~--C~a~~~~~~~~~~-~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~  160 (785)
                       .|.  |.|....|..... ..+++..   ..-.+...+.-..+..+..+.+.|.. .+.|...++|++++..+....-.
T Consensus       101 ~d~~cQc~a~~~~g~~~s~~a~vr~ay---~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~  177 (909)
T KOG1480|consen  101 EDYWCQCVAWSDDGTVKSRKATVRIAY---LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV  177 (909)
T ss_pred             cceeeeeeeecCCCcchhhhHHHHHHH---HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc
Confidence             454  5566655532221 1112111   11223344556678888999999987 57788899999999887764222


Q ss_pred             EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE-EEEEEee
Q psy2775         161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVD  201 (785)
Q Consensus       161 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~  201 (785)
                      .......|++..++..|.|+|+|+|.|..+.... .+.+.|.
T Consensus       178 ~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  178 IRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             hhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            2233456899999999999999999998875443 2444443

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.67  E-value=0.00044  Score=55.57  Aligned_cols=70  Identities=19%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCC-eeEEeeCC-eE-EEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK-KREIFDGE-NI-ILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~-~~~~~~~~-~~-~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      +..|+.++|.|.+.|+ |.. .++|+|||+++..+.. .....+++ .+ +...-.+.. .+...|+|.+......
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~l~   85 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCCCC
Confidence            3468999999999996 665 8999999999866421 11222221 21 112223344 5667899999987653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.62  E-value=0.00082  Score=53.80  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             cCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          25 EENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        25 ~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      ..|+.++|.|.+.|+ |. ..++|.+||..+......  ...+.++.+...+.|++..   ++...|+|.+.+...
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l   85 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL   85 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence            346778999999997 43 678999999987553211  1223344555556677754   456699999998653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.62  E-value=0.00017  Score=57.82  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecC---CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      |-.+..+|.......+..++|.|.+.|.-   ...|.|.+++.. ...........++.+...+.|+|..-.-.-...|+
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt   82 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA   82 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence            33344456666666899999999999864   367999999875 11111122334556666788888754444445799


Q ss_pred             EEEEcCCe
Q psy2775          89 VVAKNREG   96 (785)
Q Consensus        89 C~a~~~~~   96 (785)
                      |.|.+...
T Consensus        83 C~V~H~~l   90 (99)
T cd04986          83 CTVTHPEG   90 (99)
T ss_pred             EEEECCCc
Confidence            99998764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.62  E-value=0.00057  Score=54.96  Aligned_cols=70  Identities=13%  Similarity=0.187  Sum_probs=47.6

Q ss_pred             cCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          25 EENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        25 ~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      ..|+.++|.|.+.|. |. ..+.|++++..+....  .-...+.++.+...+.|.+..   .+...|.|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence            468999999999986 43 4789999999876541  112223333444456666643   4667999999987643

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.57  E-value=0.1  Score=51.75  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=72.9

Q ss_pred             CcceeCCCCeEEEEEEEcc--CC-CCeEEEEECCEEcc--------------------cceEE------EeCCEEEEEEc
Q psy2775         243 HDVSITEGESAVLSVQVGG--EP-SPKVEWYKDGKLIK--------------------DRQIT------SEKNTHTLTLI  293 (785)
Q Consensus       243 ~~~~~~~G~~~~l~C~~~g--~p-~~~v~W~~~~~~l~--------------------~~~~~------~~~~~~~l~i~  293 (785)
                      ....+..|..+.|.|..+-  +. -..++|+-.|-++.                    +..+.      ..-..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            3456667999999998753  33 34688986543332                    11111      12235689999


Q ss_pred             cCCCCCCeEEEEEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCcc-EEEEEEEcC---CCCeEEEEECCEEcC
Q psy2775         294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN-AVLEVEVTS---DKADVKWFKDGQEIK  367 (785)
Q Consensus       294 ~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~---~~~~v~W~~~~~~l~  367 (785)
                      .+.....|-|+|+|....-......-|.|...  .+.     ....+|.. ....|-+..   .++.+.|.-+|....
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~--V~f-----~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH--VFF-----KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccE--EEE-----EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            99999999999999987544444444544421  111     12234333 345687754   367899998886543

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.56  E-value=0.00068  Score=54.40  Aligned_cols=74  Identities=14%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             CeEEEEEEEEec-CCCeeEEEECCE----Ec-----------cC--CCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          28 SEVTLEVRLVAV-PEPDLLWYYNGE----PL-----------QE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        28 ~~v~l~C~~~g~-p~~~i~W~~~~~----~~-----------~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ++++|.|..... ....+.|.|...    .+           ..  .+|+.+.....   ..++|+|.+++.+|+|.|+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~---~d~sI~i~nvt~~D~G~Y~C   77 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTR---EDMSLSFNNATEEDVGLYCC   77 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCC---CccEEEEcCCCcccCEEEEE
Confidence            468999998432 335678998532    11           00  12334432221   23679999999999999999


Q ss_pred             EEEc-CCeeEEEEeeE
Q psy2775          90 VAKN-REGEAKMDIPV  104 (785)
Q Consensus        90 ~a~~-~~~~~~~~~~v  104 (785)
                      .+.. ..|.....+.|
T Consensus        78 ~~~t~P~g~~~~~i~~   93 (96)
T cd05889          78 SLVTYPQGSWEKVIEV   93 (96)
T ss_pred             EEEeCCCCCeEEEEEE
Confidence            9974 45555555443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.53  E-value=0.00023  Score=58.17  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=43.9

Q ss_pred             eeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe--eEEee---CCe----EEEEEccCCCCCCceeEEEEEEcC
Q psy2775         569 TVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIFD---GEN----IILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~--~~~~~---~~~----~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .+..|..++|.|.|.|+ |.. .++|+|||+++......  ....+   ++.    +.|.+..-.. .+...|+|.+...
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w-~~~~~ytC~V~H~   90 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDW-NAGDVFTCVVGHE   90 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHh-cCCCcEEEEeEeC
Confidence            34457899999999996 654 78999999987543211  11111   122    2455533222 3456799999986


Q ss_pred             Cc
Q psy2775         638 LG  639 (785)
Q Consensus       638 ~g  639 (785)
                      ..
T Consensus        91 ~l   92 (102)
T cd05768          91 AL   92 (102)
T ss_pred             CC
Confidence            54

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.52  E-value=0.00047  Score=58.70  Aligned_cols=71  Identities=14%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             eeeeeeecCeEEEEEEEecCC------CCceEEEeCCEE------ec--C---------CCCeeEE--eeCCeEEEEEcc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASP------APSIVWFRNNKP------LL--S---------SPKKREI--FDGENIILELKE  620 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P------~p~v~W~~~~~~------i~--~---------~~~~~~~--~~~~~~~L~i~~  620 (785)
                      +.+.+.+|+.|+|.|.....+      ...+.|||....      +.  .         ..|+...  ...+...|+|.+
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~   86 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD   86 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence            466899999999999876322      236899985321      10  0         0122221  134457899999


Q ss_pred             CCCCCCceeEEEEEEcC
Q psy2775         621 ADSETDAGDYKVVATNE  637 (785)
Q Consensus       621 ~~~~~d~G~Y~C~a~n~  637 (785)
                      ++. +|+|.|.|.+...
T Consensus        87 l~~-~Dsg~Y~C~~~~~  102 (119)
T cd05712          87 AQP-EDSGKYFFRVELG  102 (119)
T ss_pred             CCh-hhCeEEEEEEEcC
Confidence            999 9999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.52  E-value=0.00051  Score=54.05  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=46.7

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEe--eCCeE----EEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIF--DGENI----ILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~--~~~~~----~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .++.++|.|.+.|+ |.. .|.|+++|..+..........  .++.+    .|.+.   . .+...|+|.+.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~-~~~~~ysC~V~H~~l~~   80 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---W-NSGDEYSCRVTHESLPE   80 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---T-TTTGGEEEEEEETTSSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---C-CCCCEEEEEEEECCCCC
Confidence            48999999999996 765 799999999987654332222  23332    45555   4 66678999999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.52  E-value=0.0012  Score=52.58  Aligned_cols=69  Identities=9%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             cCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          25 EENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        25 ~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      ..|+..+|.|.+.|. | ...++|++||..+...... ...+.+..+...+.|.+.   ..+...|.|.+.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l   84 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSM   84 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCC
Confidence            457778999999987 3 3678999999987622111 122334444444556665   4577789999998643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.51  E-value=0.00065  Score=54.56  Aligned_cols=73  Identities=10%  Similarity=0.049  Sum_probs=49.1

Q ss_pred             CCCeEEEEEEE-EecCCCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEE
Q psy2775          26 ENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD  101 (785)
Q Consensus        26 ~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~  101 (785)
                      ......+.|.+ .|+|.+.|.|+++   +...... .....++.....++|.+.....+|+-.|+|++.+........
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~   88 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR   88 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            34467889998 6789999999987   2111111 222233345556789998777778889999999876544333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.50  E-value=0.00027  Score=56.92  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=42.7

Q ss_pred             eeeeeecCeEEEEEEEecC--CCC-ceEEEeCCEEecC-CCCeeEEeeCCe----EEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         567 EKTVKEKGTIRLMAKVKAS--PAP-SIVWFRNNKPLLS-SPKKREIFDGEN----IILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~--P~p-~v~W~~~~~~i~~-~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      ...+..|+.++|.|.+.|+  |+. .|+|+|||..... .........++.    +.|.+..-.- ++.-.|+|.+.+..
T Consensus         8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w-~~g~~ysC~V~H~~   86 (96)
T cd07696           8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDW-ISGDTFQCKVTHPD   86 (96)
T ss_pred             HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHc-cCCCcEEEEEECCC
Confidence            3346678999999999998  554 7999998753321 111111111222    2344443221 23446999999876


Q ss_pred             cc
Q psy2775         639 GS  640 (785)
Q Consensus       639 g~  640 (785)
                      ..
T Consensus        87 l~   88 (96)
T cd07696          87 LP   88 (96)
T ss_pred             CC
Confidence            43

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.49  E-value=0.00067  Score=55.31  Aligned_cols=75  Identities=11%  Similarity=0.096  Sum_probs=51.2

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--C-CeeEEEECCE-Ec--------------cCCCCEEEeecCCccceEEEEEEc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--E-PDLLWYYNGE-PL--------------QETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~-~~i~W~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      ..++....+..|+.++|.|+++|..  . ..+.|+|.-. .+              ....+..+..+.+.  ...+|+|.
T Consensus         2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~--ntv~L~l~   79 (115)
T cd05721           2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGN--EQVNFTLQ   79 (115)
T ss_pred             eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCC--CEEEEEEc
Confidence            4567788899999999999997753  3 4678988422 10              01122233333332  33569999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy2775          78 SIKKREEGVYTVVAK   92 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~   92 (785)
                      +++.+|++.|.|...
T Consensus        80 ~L~a~DTa~Y~Ca~e   94 (115)
T cd05721          80 NLRANQTDIYFCKIE   94 (115)
T ss_pred             CCCHHHCeEEEEEee
Confidence            999999999999873

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.46  E-value=0.00089  Score=53.80  Aligned_cols=69  Identities=12%  Similarity=0.167  Sum_probs=46.2

Q ss_pred             CCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          26 ENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        26 ~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      .++.++|.|.+.|. |. ..++|+++|.. .....  ......++.+...+.|++....-...-.|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            56679999999987 33 67899999997 33211  0111224556666778777654334567999999865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.44  E-value=0.0014  Score=52.65  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             CeEEEEEEEecC-CCCceEEEeCCE----Eec-----------CCCCeeEEee---CCeEEEEEccCCCCCCceeEEEEE
Q psy2775         574 GTIRLMAKVKAS-PAPSIVWFRNNK----PLL-----------SSPKKREIFD---GENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       574 ~~v~l~C~~~g~-P~p~v~W~~~~~----~i~-----------~~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +.++|.|..... ....|+|.|...    .+.           ..-..++.+.   ....+|.|.+++. +|+|.|+|..
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~-~D~G~Y~C~~   79 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATE-EDVGLYCCSL   79 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCc-ccCEEEEEEE
Confidence            468999997643 234789988421    110           0000122222   2347899999999 9999999999


Q ss_pred             Ec-CCcceEEEEEE
Q psy2775         635 TN-ELGSATHGARV  647 (785)
Q Consensus       635 ~n-~~g~~~~~~~l  647 (785)
                      .. +.|..++.+.+
T Consensus        80 ~t~P~g~~~~~i~~   93 (96)
T cd05889          80 VTYPQGSWEKVIEV   93 (96)
T ss_pred             EeCCCCCeEEEEEE
Confidence            65 46766654443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.39  E-value=0.001  Score=53.37  Aligned_cols=71  Identities=10%  Similarity=0.069  Sum_probs=43.8

Q ss_pred             CeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeE-EeeCC----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         574 GTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       574 ~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~-~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      ....+.|.+ .|.|.+.|+|+++.   ........ ...++    .+.|.+..... +|...|+|+|.|..-.......+
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~-d~G~~~tC~v~h~~l~~~~~~~~   91 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSRE-ANGKELTCVVSHPTLQEPQRFSV   91 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCCCeEEEE
Confidence            467899998 57899999999971   11111111 11122    34577765544 56666999999987555444444


Q ss_pred             E
Q psy2775         648 T  648 (785)
Q Consensus       648 ~  648 (785)
                      .
T Consensus        92 ~   92 (95)
T cd05719          92 T   92 (95)
T ss_pred             E
Confidence            3

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.38  E-value=0.001  Score=53.17  Aligned_cols=81  Identities=9%  Similarity=0.033  Sum_probs=51.9

Q ss_pred             eEecCCC--eEEEEEEE-EecCCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          22 VYAEENS--EVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        22 ~~v~~G~--~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      +.|..|.  .+.+.|.+ .|.|.+.|.|+++.   ....... ....++.....+.|.+.....+|+..|+|+|.+....
T Consensus         8 ~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703           8 VEVSAGTIPVPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             EEeecCCCccEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            3444444  57899988 57799999999872   2211112 2222333344578988877777888999999998755


Q ss_pred             EEEEeeEE
Q psy2775          98 AKMDIPVK  105 (785)
Q Consensus        98 ~~~~~~v~  105 (785)
                      ....+.+.
T Consensus        85 ~~~~~~~~   92 (95)
T cd07703          85 EPQLLPVT   92 (95)
T ss_pred             CCeEEEEE
Confidence            44444443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.38  E-value=0.00068  Score=56.42  Aligned_cols=78  Identities=14%  Similarity=0.213  Sum_probs=49.6

Q ss_pred             eeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe--eEEeeC-Ce----EEEEEccCCCCCC-ceeEEEEEEc
Q psy2775         567 EKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIFDG-EN----IILELKEADSETD-AGDYKVVATN  636 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~--~~~~~~-~~----~~L~i~~~~~~~d-~G~Y~C~a~n  636 (785)
                      ...+.+++.++|.|.+.|+ |.. .|+|+|||+++..+...  ....++ +.    +.|.|..-.. .+ ...|+|.+..
T Consensus        12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w-~~~~~~ytC~V~H   90 (115)
T cd05769          12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW-FNPRNTFTCIVQF   90 (115)
T ss_pred             hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh-ccCCCeEEEEEEE
Confidence            3344567789999999996 774 89999999988654321  111221 22    3455554322 23 4579999998


Q ss_pred             CCcceEEEE
Q psy2775         637 ELGSATHGA  645 (785)
Q Consensus       637 ~~g~~~~~~  645 (785)
                      .........
T Consensus        91 ~g~~~~~~~   99 (115)
T cd05769          91 YGGTDTDKW   99 (115)
T ss_pred             eCCccceee
Confidence            866555433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.38  E-value=0.00056  Score=54.84  Aligned_cols=66  Identities=14%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             eeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe-eEEeeCCeE----EEEEccCCCCC-CceeEEEEEEcCC
Q psy2775         569 TVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFDGENI----ILELKEADSET-DAGDYKVVATNEL  638 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~-~~~~~~~~~----~L~i~~~~~~~-d~G~Y~C~a~n~~  638 (785)
                      .+..+..++|.|.|.|+ |.. .++|+|||..+..+... ....+++.+    .|.+.   . + ....|+|.+....
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~-~~~~~~ysC~V~H~g   85 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---K-DSLGKKFRCIYKHEG   85 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---c-hhCCCeEEEEEEECC
Confidence            34446789999999995 655 89999999987654321 122233332    23333   3 3 3344999999853

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.37  E-value=0.00066  Score=53.24  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             eEEEEEEEEecCC--CeeEEEECCE-----Ecc-------------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          29 EVTLEVRLVAVPE--PDLLWYYNGE-----PLQ-------------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        29 ~v~l~C~~~g~p~--~~i~W~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      +++|.|.+.....  ..+.|++...     .+.             ...++.+....  .....+|+|.+++.+|+|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~   78 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT--SKNDVSLTISNLRVEDTGTYY   78 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC--cCCEEEEEEcCCCHHHCEEEE
Confidence            4789999876544  3799998542     010             01233332221  122366999999999999999


Q ss_pred             EEE
Q psy2775          89 VVA   91 (785)
Q Consensus        89 C~a   91 (785)
                      |.+
T Consensus        79 C~v   81 (81)
T smart00406       79 CAV   81 (81)
T ss_pred             EcC
Confidence            974

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.33  E-value=0.00036  Score=49.93  Aligned_cols=51  Identities=18%  Similarity=0.243  Sum_probs=35.9

Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .|.+|+|+|...+.   .+.|.+++..+.....          .+.+.+..  +++|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~--e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF--SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC--CCCceEEEEeCCC
Confidence            58999999986632   3999999966543222          24444444  6899999999654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG0613|consensus

Probab=97.33  E-value=0.0005  Score=78.08  Aligned_cols=213  Identities=19%  Similarity=0.237  Sum_probs=129.5

Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCC--C----------CCC---ceecCCCceEeccCCcEEEEEE
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGK--P----------EKP---SILEPLHDVSITEGESAVLSVQ  136 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~--~----------~~p---~i~~~~~~~~~~~G~~v~l~C~  136 (785)
                      .+..|.+....+.+.|+|...+..+.....+...+....  .          .+|   ........+....+..+.+.|.
T Consensus       278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~  357 (1205)
T KOG0613|consen  278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA  357 (1205)
T ss_pred             ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence            457788888888899999988887766555443333211  1          111   1112223455666778999999


Q ss_pred             EeccCCCe-EEEeECCEEcccce-----EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCC
Q psy2775         137 VGGEPSPK-VEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE  210 (785)
Q Consensus       137 ~~g~p~~~-v~W~~~g~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~  210 (785)
                      ..+.+.+. +.||+++.......     .........+.|..+...+.+.|.|.|.|..|........+|.......   
T Consensus       358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt---  434 (1205)
T KOG0613|consen  358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGT---  434 (1205)
T ss_pred             ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCC---
Confidence            98887775 99999876654332     2334446678899999999999999999998866554444443221100   


Q ss_pred             CCCCCCCccccccceeeecCCCCCCCeeeecCC-cceeCCCCeEEEEEEEccCCCC--eEEEEECCEEcccceE-EEeCC
Q psy2775         211 TPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH-DVSITEGESAVLSVQVGGEPSP--KVEWYKDGKLIKDRQI-TSEKN  286 (785)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~G~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~-~~~~~  286 (785)
                                             .++.+...-. ...+..-+.+.+.|...+++.+  .++|++++-....... .....
T Consensus       435 -----------------------~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~  491 (1205)
T KOG0613|consen  435 -----------------------QPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDV  491 (1205)
T ss_pred             -----------------------CCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccc
Confidence                                   1111111111 1122233668889988887755  5567776655542222 22333


Q ss_pred             EEEEEEccCCCCCCeEEEEEEEeC
Q psy2775         287 THTLTLIQCSTKDKGRYSVKVTNK  310 (785)
Q Consensus       287 ~~~l~i~~~~~~d~G~Y~C~~~n~  310 (785)
                      ..+|.+.-....++|.|.-.....
T Consensus       492 ~tslLlk~~~~~~~A~~~~a~~~~  515 (1205)
T KOG0613|consen  492 LTSLLLKVASLSDGAQYTRALRTL  515 (1205)
T ss_pred             hhhheeeccCCCccchhhhhhhcc
Confidence            446777777888888886544433

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.32  E-value=0.00095  Score=56.45  Aligned_cols=69  Identities=16%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             eeeeeecCeEEEEEEEecCC--CCceEEEeCC---EE--e---cC-----------CCCeeEEeeC--CeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASP--APSIVWFRNN---KP--L---LS-----------SPKKREIFDG--ENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~---~~--i---~~-----------~~~~~~~~~~--~~~~L~i~~~~~  623 (785)
                      ...+.+|++++|.|...+.-  ...+.|||..   .+  |   ..           .+++....+.  ....|+|.++..
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            55789999999999987543  3469999832   11  1   00           1223333222  345799999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|+|.|.|.+..
T Consensus        86 -~Dsa~YyCa~~~   97 (117)
T cd04981          86 -EDTAVYYCARGL   97 (117)
T ss_pred             -HHCEEEEEEEEc
Confidence             999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.26  E-value=0.0022  Score=51.49  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=47.9

Q ss_pred             CCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          19 TKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      |+...+..++.++|.|.+.|. |. ..++|.++|..+..+... .....++.+...+.|+|..-+  ....|+|.+.+..
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            444455557789999999986 43 578999999987543221 112233344455667776533  2345999999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.26  E-value=0.00081  Score=52.73  Aligned_cols=58  Identities=17%  Similarity=0.233  Sum_probs=39.8

Q ss_pred             eEEEEEEEecCCCC--ceEEEeCCE-----Eec-------------CCCCeeEEee--CCeEEEEEccCCCCCCceeEEE
Q psy2775         575 TIRLMAKVKASPAP--SIVWFRNNK-----PLL-------------SSPKKREIFD--GENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       575 ~v~l~C~~~g~P~p--~v~W~~~~~-----~i~-------------~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      +++|.|.+.....+  .+.|++...     .+.             ...++.....  .+..+|.|.+++. +|+|.|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYC   79 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEE
Confidence            47899998876554  799998441     011             0122222223  5568899999999 99999999


Q ss_pred             E
Q psy2775         633 V  633 (785)
Q Consensus       633 ~  633 (785)
                      .
T Consensus        80 ~   80 (81)
T smart00406       80 A   80 (81)
T ss_pred             c
Confidence            6

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.24  E-value=0.00089  Score=48.23  Aligned_cols=59  Identities=20%  Similarity=0.366  Sum_probs=41.9

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .+.|.|+|.+.    -+|.|++ |..+...         .+.+|.+..... +-.|.|.|.+++    ...+..|.|.
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~---------~~~tlnLGs~~~-DPRG~Y~C~~s~----~~~~~~LQVy   64 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEV---------SNTLLDLGSRIN-DPRGTYSCKESE----PNKEKTLQVY   64 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccccc---------cccEEeccCccc-CCCcceEecCcc----CCCcEEEEEE
Confidence            45899999762    4699999 6555322         145688888888 889999999987    2334555554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.24  E-value=0.002  Score=51.37  Aligned_cols=77  Identities=12%  Similarity=0.063  Sum_probs=54.6

Q ss_pred             CCceEecCCCeEEE-EEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          19 TKPVYAEENSEVTL-EVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        19 ~~~~~v~~G~~v~l-~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      -..+.+.+|+.+.+ .|.+ .|.|.+.|.|+.+.....  ........++...-.+.|.+...+.+|.-.++|++.+...
T Consensus         8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704           8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            34577889999999 9987 677999999997643321  1112222333444567788888888888899999998754


Q ss_pred             e
Q psy2775          97 E   97 (785)
Q Consensus        97 ~   97 (785)
                      .
T Consensus        86 ~   86 (97)
T cd07704          86 Q   86 (97)
T ss_pred             C
Confidence            3

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.18  E-value=0.00071  Score=48.70  Aligned_cols=59  Identities=24%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             CCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       128 G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      .+.|.|.|.+    ..+|.|++ |..+....      ..+|.+.....+-.|.|.|.+++    .+....|+|.
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy   64 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY   64 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence            4579999965    24699999 55543221      55789999999999999999876    2344556665

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.14  E-value=0.0024  Score=51.36  Aligned_cols=65  Identities=12%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCC-eeEEee-CCeE----EEEEccCCCCCCceeEEEEEEcCC
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK-KREIFD-GENI----ILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~-~~~~~~-~~~~----~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .++.++|.|.|.|+ |.. +|+|+|||++ ..+.. ...... ++.+    .|.+..-.- .....|+|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEW-KGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHc-CCCCcEEEEEEeCC
Confidence            46679999999996 665 8999999998 33311 111122 3332    344443211 12556999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.09  E-value=0.004  Score=49.83  Aligned_cols=71  Identities=10%  Similarity=-0.007  Sum_probs=43.5

Q ss_pred             CeEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeE-EeeCC----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         574 GTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       574 ~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~-~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      ..+.+.|.+. |.|.+.|+|+++....   ..... ...++    .+.|.+..-.. +|...|+|.|+|..........+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~-d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPE-ANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCCCeEEEE
Confidence            4678999876 6799999999972111   11111 11122    24567755444 66667999999987555444444


Q ss_pred             E
Q psy2775         648 T  648 (785)
Q Consensus       648 ~  648 (785)
                      .
T Consensus        92 ~   92 (95)
T cd07703          92 T   92 (95)
T ss_pred             E
Confidence            3

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.08  E-value=0.002  Score=46.16  Aligned_cols=51  Identities=20%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             ecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         428 SRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       428 ~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      ..|.+|+|+|......  +.|.++++.+..++.          .+.+.+.. ++.|.|+|.+.+
T Consensus         5 isGTtVtlTCP~~~~~--i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGDD--IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCCC--ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence            4699999999755433  999999976654322          34444445 889999999976

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.07  E-value=0.0026  Score=50.26  Aligned_cols=63  Identities=14%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             eccCCcEEEEEEEec-cCC--CeEEEeECCEEcccceEEE-------eCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         125 ITEGESAVLSVQVGG-EPS--PKVEWYKDGKLIKDRQITS-------EKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       125 ~~~G~~v~l~C~~~g-~p~--~~v~W~~~g~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                      +.+|..+++.|.+.+ .|.  ..+.|+++...+....+..       ......++|...+.+|...|+|+|.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEE
Confidence            478999999999965 444  4799999887766553322       11234566666555555599999964

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.93  E-value=0.0059  Score=48.67  Aligned_cols=70  Identities=13%  Similarity=0.197  Sum_probs=47.8

Q ss_pred             CceEeccCCcEEE-EEEE-eccCCCeEEEeECCEEcccce-EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         121 HDVSITEGESAVL-SVQV-GGEPSPKVEWYKDGKLIKDRQ-ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       121 ~~~~~~~G~~v~l-~C~~-~g~p~~~v~W~~~g~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ....+..|+.+.+ .|.+ .|.|+++|+|+.+........ .....+    .++|.+...+.+|.-.++|++.+..-
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            3456778888888 9988 578999999998633322111 111111    34577777777888899999998754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.68  E-value=0.0095  Score=48.74  Aligned_cols=69  Identities=10%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             eeeeeeecCeEEEEEEEecCCCC---ceEEEeCCE-Ee------------c--CCCCeeE--EeeCCeEEEEEccCCCCC
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNK-PL------------L--SSPKKRE--IFDGENIILELKEADSET  625 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~-~i------------~--~~~~~~~--~~~~~~~~L~i~~~~~~~  625 (785)
                      ....+..|..++|.|.+.|+-..   .++|+|... .+            .  ...+...  ....+..+|+|.+++. +
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~   84 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-N   84 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-H
Confidence            35578889999999999886433   588988321 10            0  0111111  1234567899999999 9


Q ss_pred             CceeEEEEEE
Q psy2775         626 DAGDYKVVAT  635 (785)
Q Consensus       626 d~G~Y~C~a~  635 (785)
                      |++.|.|..+
T Consensus        85 DTa~Y~Ca~e   94 (115)
T cd05721          85 QTDIYFCKIE   94 (115)
T ss_pred             HCeEEEEEee
Confidence            9999999874

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.68  E-value=0.0098  Score=47.04  Aligned_cols=69  Identities=20%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             ecCCCeEEEEEEEEec-CC--CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe-EEEEEEEc
Q psy2775          24 AEENSEVTLEVRLVAV-PE--PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG-VYTVVAKN   93 (785)
Q Consensus        24 v~~G~~v~l~C~~~g~-p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~~   93 (785)
                      +.+|..++|.|.+.+. |.  ..+.|++++..+....-...........-.+.++|... ++|.| .|.|+|.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence            3799999999999643 44  67999987766644321110000111111234666554 66666 99999973

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02633 hypothetical protein; Provisional

Probab=96.60  E-value=0.006  Score=42.77  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             EEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      .|.|-++..+|+|.|.|...|..-....++.|.|..
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            399999999999999999999888888888888863

>PHA02982 hypothetical protein; Provisional

Probab=96.51  E-value=0.037  Score=49.48  Aligned_cols=81  Identities=17%  Similarity=0.389  Sum_probs=57.1

Q ss_pred             CeEEecCCcEEEEEEEeCC--CceEEEEECCEEccc-------------------CCCEEEEEeCcEEEEEEccCCCCCc
Q psy2775         424 DVKVSRDEKASFEIELTKG--DALVKWYKDGKEIAF-------------------SENVTLSIDGKKQKLIIFSAGLEDA  482 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~~--~~~i~W~~~~~~~~~-------------------~~~~~~~~~~~~~~L~i~~~~~~d~  482 (785)
                      ++....++++.|.|.....  -.+..|++++.....                   .+.+..+.+++.++|+|..+..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            4455679999999996542  335789875422111                   2345667788899999999999999


Q ss_pred             EEEEEEEeec-Cccee-EEEEEEE
Q psy2775         483 GEYSCRVGDT-GDKES-KATLTVE  504 (785)
Q Consensus       483 G~Y~C~a~n~-g~~~~-~~~l~V~  504 (785)
                      |-|+|+|... +..+. ..-|.|+
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~  136 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQ  136 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEe
Confidence            9999999986 33333 4556664

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.48  E-value=0.0037  Score=52.34  Aligned_cols=83  Identities=18%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             ecCCCeEEEEEEEEec-----CCCeeEEEECCEEccC---CCCEEEeec------CCccceEEEEEEcccCCCCCeEEEE
Q psy2775          24 AEENSEVTLEVRLVAV-----PEPDLLWYYNGEPLQE---TDEVVFSDQ------SDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        24 v~~G~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~---~~~~~~~~~------~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..=+++|.|+|.+...     +...|.|.+++..+-.   .........      .....+.+.|.+...+.- .|.|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            3448999999998541     3457999999886521   111110000      222233456888775554 899999


Q ss_pred             EEEcCCeeEEEEeeEEEe
Q psy2775          90 VAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~  107 (785)
                      .+.....+.+..+.|+..
T Consensus       103 eVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  103 EVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEETTEEEEEEEEEEE-
T ss_pred             EEEecCCCceEEEEEEEE
Confidence            999988888877777663

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=96.35  E-value=0.053  Score=48.52  Aligned_cols=82  Identities=13%  Similarity=0.240  Sum_probs=56.4

Q ss_pred             eeeeeecCeEEEEEEEecC-CCCceEEEeCCEEecC-------------------CCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLS-------------------SPKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~i~~-------------------~~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                      ++....|++|.|.|..... --.+..|++++.....                   -..+.....+..++|+|..+.. +.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~N  111 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-QN  111 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-cc
Confidence            5566779999999994322 2237899985532221                   1123344567789999999999 99


Q ss_pred             ceeEEEEEEcCCcceEE-EEEEEE
Q psy2775         627 AGDYKVVATNELGSATH-GARVTV  649 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~-~~~l~V  649 (785)
                      .|=|+|.|....|..+. ..=|.|
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V  135 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEI  135 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeE
Confidence            99999999987765544 334444

>PHA02633 hypothetical protein; Provisional

Probab=96.33  E-value=0.011  Score=41.54  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=30.7

Q ss_pred             EEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       614 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .-|-|-++.. +|+|.|.|+..|+.-..+.++.|.|.
T Consensus        18 ~nLwilpa~~-sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         18 NNMLILNPTQ-SDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccEEEecccc-ccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            3488888888 99999999999988888888888876

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.30  E-value=0.0062  Score=48.91  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=41.1

Q ss_pred             EecCCcEEEEEEEeCCC----ceEEEEECCEEcccC-CCEEEEEeCc---EEEEEEccCCCCCcEEEEEEEeecC
Q psy2775         427 VSRDEKASFEIELTKGD----ALVKWYKDGKEIAFS-ENVTLSIDGK---KQKLIIFSAGLEDAGEYSCRVGDTG  493 (785)
Q Consensus       427 v~~g~~~~l~C~~~~~~----~~i~W~~~~~~~~~~-~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~g  493 (785)
                      +..+..++|.|.+.+..    ..|+|.++|.. ... .......++.   .+.|.+..-.......|+|.+.+.+
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            44688999999999843    46999999875 111 1111111222   3556665444455566999999863

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG1480|consensus

Probab=96.22  E-value=0.001  Score=70.90  Aligned_cols=167  Identities=19%  Similarity=0.282  Sum_probs=99.2

Q ss_pred             CCeeeecCCcceeCCCCeEEEEEEEccCCCCeE----EEEECCEEcccceEE----EeCCEEEEEEccCCCCCC---eEE
Q psy2775         235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKV----EWYKDGKLIKDRQIT----SEKNTHTLTLIQCSTKDK---GRY  303 (785)
Q Consensus       235 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v----~W~~~~~~l~~~~~~----~~~~~~~l~i~~~~~~d~---G~Y  303 (785)
                      -|.|+..+....+..+..+.|.|.+...+...+    .|..+.+........    .........|.....++.   -.|
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~  103 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY  103 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence            467778888888999999999999864443322    355433222100000    000111233333322222   225


Q ss_pred             --EEEEEeCCCceEEE-EEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEEEEcC
Q psy2775         304 --SVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKG  378 (785)
Q Consensus       304 --~C~~~n~~g~~~~~-~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~~  378 (785)
                        .|.+....|...+. ..+.+.+...-+...+.-..+..+....+.|....  +.+.+.|++++..+............
T Consensus       104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~  183 (909)
T KOG1480|consen  104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH  183 (909)
T ss_pred             eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC
Confidence              45565656622211 11111122222344455567888888999988754  56789999999888775555555555


Q ss_pred             cEEEEEEcCCCCCCceEEEEEEeccc
Q psy2775         379 TIRKLLIRNISVHDEGEYTCSLPDQE  404 (785)
Q Consensus       379 ~~~~l~i~~~~~~d~G~Y~C~a~n~~  404 (785)
                      .   +.+..+...|.|+|+|+|.|..
T Consensus       184 ~---li~~~arlsd~~nytc~a~ni~  206 (909)
T KOG1480|consen  184 N---LIISQARLSDSGNYTCEATNIV  206 (909)
T ss_pred             C---ccccchhhhhcccceeeeehhh
Confidence            5   9999999999999999998743

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=96.21  E-value=1.5  Score=43.76  Aligned_cols=159  Identities=19%  Similarity=0.263  Sum_probs=95.1

Q ss_pred             CCeEEecCCcEEEEEEEeC-C---CceEEEEECCEEcc-----------------cCCCEEEEEe------CcEEEEEEc
Q psy2775         423 QDVKVSRDEKASFEIELTK-G---DALVKWYKDGKEIA-----------------FSENVTLSID------GKKQKLIIF  475 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~---~~~i~W~~~~~~~~-----------------~~~~~~~~~~------~~~~~L~i~  475 (785)
                      ....+..|..+.|.|..+- +   -....|+-.|-++.                 ..+.+.++..      -..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            4466777999999999875 2   23578987554332                 1223444432      236899999


Q ss_pred             cCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         476 SAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      .++.+++|-|.|+|... -......-|.|...                              +-+.|.            
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~------------------------------V~f~W~------------  389 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH------------------------------VFFKWN------------  389 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccE------------------------------EEEEEE------------
Confidence            99999999999999874 33333444444432                              223442            


Q ss_pred             CCCCCeEeeeeeeeeeeec-CeEEEEEEEecC--CCCceEEEeCCEEecCCCCeeE------EeeC-CeEEEEEccCCCC
Q psy2775         555 PGQAPLFIERFEEKTVKEK-GTIRLMAKVKAS--PAPSIVWFRNNKPLLSSPKKRE------IFDG-ENIILELKEADSE  624 (785)
Q Consensus       555 ~~~~p~~~~~~~~~~v~~g-~~v~l~C~~~g~--P~p~v~W~~~~~~i~~~~~~~~------~~~~-~~~~L~i~~~~~~  624 (785)
                                      .+| ......|-+..+  .++++.|.-+|...........      +.++ ....+.|.+-.. 
T Consensus       390 ----------------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d-  452 (500)
T PHA02914        390 ----------------TEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRD-  452 (500)
T ss_pred             ----------------eccCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccC-
Confidence                            122 345677877655  4558999998876543221111      1111 234577777655 


Q ss_pred             CC-ceeEEEEEEcCCcc
Q psy2775         625 TD-AGDYKVVATNELGS  640 (785)
Q Consensus       625 ~d-~G~Y~C~a~n~~g~  640 (785)
                      .| --.-.|+.--..|-
T Consensus       453 ~dtV~k~~Cr~~tg~~Y  469 (500)
T PHA02914        453 KDTVKKLSCINITGQGY  469 (500)
T ss_pred             ccccccceEEEecCCCc
Confidence            55 45577876655443

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.96  E-value=0.0048  Score=51.71  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             eeecCeEEEEEEEecC-----CCCceEEEeCCEEecCCCC--eeEE-----------eeCCeEEEEEccCCCCCCceeEE
Q psy2775         570 VKEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPK--KREI-----------FDGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-----P~p~v~W~~~~~~i~~~~~--~~~~-----------~~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      ..-+++|.|.|.+...     +...|.|.++|..+-.-+.  ....           ...+..+|.+...+.  -.|.|+
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a--~~GnYT  101 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA--VEGNYT  101 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH--H-EEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc--cccceE
Confidence            4457999999999763     2235999999987632111  0000           012345588877554  389999


Q ss_pred             EEEEcCCcceEEEEEEEEE
Q psy2775         632 VVATNELGSATHGARVTVD  650 (785)
Q Consensus       632 C~a~n~~g~~~~~~~l~V~  650 (785)
                      |.+.+...+.+..+.|...
T Consensus       102 CeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE-
T ss_pred             EEEEecCCCceEEEEEEEE
Confidence            9999888877777777664

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=95.65  E-value=0.023  Score=57.43  Aligned_cols=94  Identities=10%  Similarity=0.031  Sum_probs=69.3

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC---CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN---GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      |-+..-|....|..|++..++|-+.|.+.+.|+|.+.   ...+.........  .-..+....|.|-+....|+|.|+|
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e--~p~vtstcql~ic~ewq~~a~w~tC  274 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVE--NPVVTSTCQLVICNEWQADAGWYTC  274 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccC--CcceeeeeeEEEcchhhcCCCceee
Confidence            5666778899999999999999999999999999753   2211111111100  0011233669999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeC
Q psy2775          90 VAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~  108 (785)
                      .+.+..|....++.+.+..
T Consensus       275 s~rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  275 SARCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             ccccccceeeccceeeeec
Confidence            9999999888888877754

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=94.95  E-value=0.57  Score=43.12  Aligned_cols=78  Identities=9%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             cccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECCEEeeeccccccch------hhhcccccceeeeeec
Q psy2775         690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNGTVIVPSKRVKGKA------EFIKKLDDLEVKEREN  761 (785)
Q Consensus       690 ~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~~~~~~~~~~------~~~~~l~~~~v~~~~~  761 (785)
                      +..+|.|+.      ....|   ...|.+.-.|..  .+.|+.++.............      .+. .++..--.....
T Consensus        79 Vy~~P~vsv------~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglv-nirs~~pls~~~  148 (211)
T PF02124_consen   79 VYPKPRVSV------RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLV-NIRSRRPLSDED  148 (211)
T ss_pred             eecCCEEEE------EecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCccee-EeecccCCCccC
Confidence            446666653      23223   346888877755  789999998753333222211      121 122211122333


Q ss_pred             --eEEEEEEecccceeEE
Q psy2775         762 --AVLEVEVTSDKADVKW  777 (785)
Q Consensus       762 --~~~~c~~~~~~~~~~w  777 (785)
                        -+|+|.+.|=...+-|
T Consensus       149 ~~~~YtC~l~GYP~~~p~  166 (211)
T PF02124_consen  149 GPVEYTCRLIGYPDILPV  166 (211)
T ss_pred             CceeEEEEEeeCCCCCCc
Confidence              4999999983333333

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>KOG4597|consensus

Probab=94.92  E-value=0.029  Score=56.76  Aligned_cols=91  Identities=14%  Similarity=0.060  Sum_probs=67.3

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe---CCEEecCCCCe--eEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKPLLSSPKK--REIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~---~~~~i~~~~~~--~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      +.++.-+....+-.+++..++|.+.|.|.+.|.|-+   |+..+......  ....-.....|.|-+... .|+|-|+|.
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq-~~a~w~tCs  275 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQ-ADAGWYTCS  275 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhh-cCCCceeec
Confidence            445555566778899999999999999999999965   33333221111  001112345699999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTVD  650 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~  650 (785)
                      |.|..|.....+.+.+.
T Consensus       276 ~rcg~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  276 ARCGAGFLRRDVPCSSV  292 (560)
T ss_pred             cccccceeeccceeeee
Confidence            99999999888888775

>PHA03042 CD47-like protein; Provisional

Probab=94.45  E-value=0.2  Score=47.29  Aligned_cols=71  Identities=17%  Similarity=0.246  Sum_probs=48.3

Q ss_pred             eecCeEEEEEEEecC-----CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         571 KEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-----P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      .-.+++.+.|.++.-     -...+.|..+++.+...+..      ..++|.+....  .-.|.|+|+|.+...+.....
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~--~l~GNYTCEv~~l~n~gk~~I  100 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK--NLSGNYTCEAINKFNKIKNTI  100 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc--cCCCceeEEEeecccCccEEE
Confidence            457899999998852     23469999999887543321      23557776543  568999999998766555544


Q ss_pred             EEEE
Q psy2775         646 RVTV  649 (785)
Q Consensus       646 ~l~V  649 (785)
                      .|.-
T Consensus       101 eLk~  104 (286)
T PHA03042        101 ELQY  104 (286)
T ss_pred             EEEE
Confidence            4443

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=94.39  E-value=3.3  Score=38.30  Aligned_cols=135  Identities=11%  Similarity=0.194  Sum_probs=70.5

Q ss_pred             CeeEEEECCEEccCCC---CEEEeecCCccceEEEEEE-cccCCCCCeEEEEEEEcCCe-eEEEEeeEEEeCCCCCCCce
Q psy2775          42 PDLLWYYNGEPLQETD---EVVFSDQSDMHSYVSIVTI-KSIKKREEGVYTVVAKNREG-EAKMDIPVKVNTGKPEKPSI  116 (785)
Q Consensus        42 ~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i-~~~~~~D~G~Y~C~a~~~~~-~~~~~~~v~v~~~~~~~p~i  116 (785)
                      ..+.||.||..+....   ......+ +..+..++|++ .+...+-.-..+|++.=... .........+      .|.+
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~-G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~------~P~V   79 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQVWSD-GLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA------TPSV   79 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEEEecC-CcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc------ccce
Confidence            3689999999876432   2222233 45667788999 45555566789999873322 2333322222      2333


Q ss_pred             ecCCC-ceEeccCCcEEEEEEEeccC--CCeEEEeECCEEcccce-EEEeC----CEEEEEEcccC--CCCcE--EEEEE
Q psy2775         117 LEPLH-DVSITEGESAVLSVQVGGEP--SPKVEWYKDGKLIKDRQ-ITSEK----NTHTLTLIQCS--TKDKG--RYSVK  184 (785)
Q Consensus       117 ~~~~~-~~~~~~G~~v~l~C~~~g~p--~~~v~W~~~g~~~~~~~-~~~~~----~~~~L~i~~~~--~~d~G--~Y~C~  184 (785)
                      ...+. .+....|.   ..|.+.-.|  ...+.|.-++....... ....+    ....+.|.+..  ....|  +|+|+
T Consensus        80 y~~P~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~  156 (211)
T PF02124_consen   80 YPKPRVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCR  156 (211)
T ss_pred             ecCCEEEEEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEE
Confidence            32222 22233333   346664444  26899998776542221 11111    11234444332  23345  89999


Q ss_pred             EE
Q psy2775         185 VT  186 (785)
Q Consensus       185 a~  186 (785)
                      +.
T Consensus       157 l~  158 (211)
T PF02124_consen  157 LI  158 (211)
T ss_pred             Ee
Confidence            86

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03042 CD47-like protein; Provisional

Probab=94.32  E-value=0.14  Score=48.31  Aligned_cols=69  Identities=20%  Similarity=0.314  Sum_probs=47.0

Q ss_pred             CCcEEEEEEEecc-----CCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         128 GESAVLSVQVGGE-----PSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       128 G~~v~l~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      ++++.+.|.+...     ....++|.+||+.+....-.   ..++|++.. ...-.|+|+|+|.+...+.+....|+-
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence            6789999998632     24479999999887544222   235677664 455689999999876655555555443

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.11  E-value=0.064  Score=53.09  Aligned_cols=21  Identities=14%  Similarity=0.566  Sum_probs=18.4

Q ss_pred             eEEEEEEEecC-CCC-ceEEEeC
Q psy2775         575 TIRLMAKVKAS-PAP-SIVWFRN  595 (785)
Q Consensus       575 ~v~l~C~~~g~-P~p-~v~W~~~  595 (785)
                      .++|.|.|.|+ |.. ++.|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999997 665 8999999

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.10  E-value=0.28  Score=39.16  Aligned_cols=43  Identities=35%  Similarity=0.429  Sum_probs=33.1

Q ss_pred             eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         606 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       606 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +..+.....+|.|+.++. .|+|.|.-+++|..|.. .+....|.
T Consensus        63 r~~F~~enlaLlIkaAq~-qDSG~Y~LEvT~~sG~V-~~~~FqVs  105 (108)
T PF11465_consen   63 RFNFTSENLALLIKAAQP-QDSGLYCLEVTNESGKV-CTKNFQVS  105 (108)
T ss_dssp             HEEEETTTTEEEESS-SG-GG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred             eEeeeccCceEEEeecCc-ccCceEEEEEEcCCCcE-EEEEEEEE
Confidence            455666778899999999 99999999999999987 44555554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.51  E-value=0.12  Score=48.69  Aligned_cols=50  Identities=20%  Similarity=0.252  Sum_probs=35.6

Q ss_pred             CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       586 P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      ..|.+.|...+..+..+.....+.+  ++.|++.++.. +++|.|+|..+-..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~--TG~L~~~~F~e-smSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITE--TGKLMFKNFQE-SMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEcc--CceEEeecccc-ccCCceEEEEEEEe
Confidence            4689999986544444443333333  33499999999 99999999998654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.15  E-value=0.53  Score=46.85  Aligned_cols=40  Identities=18%  Similarity=0.232  Sum_probs=27.1

Q ss_pred             ccccCCCCeeeecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC
Q psy2775           6 DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN   49 (785)
Q Consensus         6 ~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~   49 (785)
                      .|.+..||....-...   ..+ .++|+|.|.|+-+  ..+.|.++
T Consensus       197 ~L~R~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        197 NIPKPVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             ccCCCCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence            4566677776553221   122 6899999999833  57899999

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=92.64  E-value=0.15  Score=47.99  Aligned_cols=48  Identities=23%  Similarity=0.374  Sum_probs=39.6

Q ss_pred             CCceEEEEEC-CEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec
Q psy2775         442 GDALVKWYKD-GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT  492 (785)
Q Consensus       442 ~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  492 (785)
                      .+|.+.|... |+.+.....+.+...|   .|.+.+....++|.|+|..+..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence            4688999885 6667666677777777   6999999999999999999863

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=91.18  E-value=0.63  Score=37.26  Aligned_cols=44  Identities=23%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             ceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEE-EEEEE
Q psy2775         279 RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV  322 (785)
Q Consensus       279 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v  322 (785)
                      .++.+...+.+|.|+.++..|+|.|.-.+++..|..... |.+.|
T Consensus        62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            345666667799999999999999999999999887432 44444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=91.17  E-value=0.89  Score=35.86  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=46.3

Q ss_pred             cCCceEecCCCeEEEEEEEEec-----CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV-----PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      .|....+..|.++++.|...-.     ....|.|..++..++... +....+.     .+.+++.+.....+-.|-|...
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q-y~~in~~-----~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ-YRVINDT-----VSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC-EEEESTT-----EEEEEESS--SSEEEEEEEEEC
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH-cceeCCe-----EEEEEEccCCCCCceEEEEEEc
Confidence            4667788999999999999422     345799999998665544 3333322     2678899888777778888744

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses []

Probab=90.59  E-value=5.9  Score=34.75  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=49.7

Q ss_pred             cCCeEEEEEEEec-CCCCceEEeECCEEeeeccccccchhhh---c-----ccccceeeeeeceEEEEEEec---cccee
Q psy2775         708 KGEDLKIEVRFKA-LPPPKAEWTVNGTVIVPSKRVKGKAEFI---K-----KLDDLEVKERENAVLEVEVTS---DKADV  775 (785)
Q Consensus       708 ~g~~~~l~C~~~g-~P~p~i~W~~~~~~~~~~~~~~~~~~~~---~-----~l~~~~v~~~~~~~~~c~~~~---~~~~~  775 (785)
                      .|+.+  .|.++. ...|.|+|......|.++.-.++=++++   +     ...+..-+..++-.|.|++..   ...++
T Consensus       108 kg~rA--vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~Da~t~~~  185 (226)
T PF05955_consen  108 KGHRA--VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALDAKTSDY  185 (226)
T ss_pred             cCcEE--EEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccccccccee
Confidence            45544  687766 5688999999999998887655422222   1     222333335577889999985   55799


Q ss_pred             EEeecCc
Q psy2775         776 KWFKNNS  782 (785)
Q Consensus       776 ~w~~~~~  782 (785)
                      +|++++.
T Consensus       186 kv~~~a~  192 (226)
T PF05955_consen  186 KVLRNAY  192 (226)
T ss_pred             eeccCcc
Confidence            9999874

; GO: 0016032 viral reproduction, 0016021 integral to membrane

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.58  E-value=2.1  Score=32.96  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=24.7

Q ss_pred             EEEcccCCCCCeEEEEEE-EcCCeeEEEEeeEEE
Q psy2775          74 VTIKSIKKREEGVYTVVA-KNREGEAKMDIPVKV  106 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a-~~~~~~~~~~~~v~v  106 (785)
                      +........|+|.+.|.| .+..........|.+
T Consensus        45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            566678889999999999 666665666555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03283 envelope glycoprotein E; Provisional

Probab=90.57  E-value=6.9  Score=41.16  Aligned_cols=96  Identities=20%  Similarity=0.293  Sum_probs=54.4

Q ss_pred             EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCc
Q psy2775         165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD  244 (785)
Q Consensus       165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  244 (785)
                      ...|.|.+++.+++|.|+-...+..+.....+.|+|.........  ++.+...+.+...         ..-..+.....
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~--~Pp~~~pv~P~~h---------~a~f~v~nYhS  201 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT--PPAPLVPQVPARH---------HTDFHVRGYHS  201 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC--CCCCccccCCccC---------CceEEEeccee
Confidence            357999999999999999999988774455566666542221111  0000000001100         11123344556


Q ss_pred             ceeCCCCeEEEEEEEccCC-----CCeEEEEE
Q psy2775         245 VSITEGESAVLSVQVGGEP-----SPKVEWYK  271 (785)
Q Consensus       245 ~~~~~G~~~~l~C~~~g~p-----~~~v~W~~  271 (785)
                      .....|+++.+.-......     ...+.|+.
T Consensus       202 ~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        202 RVYSPGDSFDLSVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             EEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence            6778899877765553321     23788875

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.29  E-value=3.1  Score=32.79  Aligned_cols=65  Identities=17%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             eeeeeeecCeEEEEEEEecC-----CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~-----P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      +...+..|++++..|...-.     ....|.|..|+..++. +.++. .++..+.+++.+... ..+-.|-|.
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-~qy~~-in~~~SsVT~~~~~~-~~~~L~cC~   80 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-SQYRV-INDTVSSVTLPNLNP-TGATLFCCK   80 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-GCEEE-ESTTEEEEEESS--S-SEEEEEEEE
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-hHcce-eCCeEEEEEEccCCC-CCceEEEEE
Confidence            35578899999999998632     3457999999996654 34444 445557889988866 555567666

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.27  E-value=2.9  Score=32.19  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             CCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEE-EcCCeeEEEEEEEEe
Q psy2775         142 SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNV  200 (785)
Q Consensus       142 ~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V  200 (785)
                      .+.+.|+..+..+...       ...+........|+|.+.|.| .+..-..+....|.|
T Consensus        26 ~~~~~l~~~~~k~~~~-------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSLET-------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEEEE-------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCcccccc-------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            3467777655443211       224566677889999999999 666655555555555

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=87.55  E-value=6.5  Score=31.01  Aligned_cols=78  Identities=6%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCC-eeEEEEC--CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYN--GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      +...|....|..|+++.++|..+- +.+ .+-|--.  ...+..+...            ..+.+.+++. | ..-.|.+
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~~W------------~~f~LsnV~~-d-s~~~C~~   70 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGPQW------------KAFQLSNVTE-D-SSPLCFF   70 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEETTE------------EEEEEEEE-S-C-EEEEEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCCcE------------EEEEEEcccc-C-CeEEEEE
Confidence            345788999999999999999743 333 3444311  1111111111            2367788885 5 5678999


Q ss_pred             EcCCeeEEEEeeEEEe
Q psy2775          92 KNREGEAKMDIPVKVN  107 (785)
Q Consensus        92 ~~~~~~~~~~~~v~v~  107 (785)
                      .........+..|.|+
T Consensus        71 ~C~g~Q~~~~~~ItVY   86 (91)
T PF03921_consen   71 NCSGEQSSASANITVY   86 (91)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EcCCeEEEeEEeeEEe
Confidence            9876666777888887

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=87.30  E-value=7  Score=30.91  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             ccccCCCCeeeecCCceEecCC----CeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCC
Q psy2775           6 DILEGIPPTFSKKTKPVYAEEN----SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus         6 ~~~~~~~p~~~~~~~~~~v~~G----~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      ......+|+|..++....+...    +...|.+++.+. ...+.||.|+..+......            ..+.+   ..
T Consensus         4 ~~~~~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~------------~~~~~---~~   67 (89)
T PF06832_consen    4 GQQSGSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG------------HQLFW---QP   67 (89)
T ss_pred             cccCCCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC------------CeEEe---CC
Confidence            4556788999887765444332    255666666555 4489999999988333221            01323   23


Q ss_pred             CCCeEEEEEEEcCCeeEEE
Q psy2775          82 REEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~~~~~~  100 (785)
                      ...|.|+-.+....|....
T Consensus        68 ~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   68 DRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             CCCeeEEEEEEcCCCCEEE
Confidence            5689999999887775443

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03286 envelope glycoprotein E; Provisional

Probab=87.29  E-value=16  Score=37.63  Aligned_cols=93  Identities=17%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecCCCCCCCC-CCCCCCCccccccceeeecCCCCCCCeeeecC
Q psy2775         165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKE-TPPSPPPYVVSELDTLQVNTGKPEKPSILEPL  242 (785)
Q Consensus       165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  242 (785)
                      ...|.|.+++.+++|.|+-...|..|....+ +.|.|.+..+..... ..+..|..     .         ..-..+...
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~-----~---------~~~f~l~ny  191 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPS-----T---------RVDLSLKNF  191 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcc-----c---------ceEEEEecc
Confidence            4579999999999999999999887655444 566665432211100 00001100     0         011234455


Q ss_pred             CcceeCCCCeEEEEEEEcc-----CCCCeEEEEE
Q psy2775         243 HDVSITEGESAVLSVQVGG-----EPSPKVEWYK  271 (785)
Q Consensus       243 ~~~~~~~G~~~~l~C~~~g-----~p~~~v~W~~  271 (785)
                      .......|+++.+.-....     .....+.|+.
T Consensus       192 ~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        192 KAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             cceEecCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence            6677788999877665541     1233788875

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=87.23  E-value=1.6  Score=46.17  Aligned_cols=37  Identities=30%  Similarity=0.368  Sum_probs=0.0

Q ss_pred             EEEEEccCCCCCcEEEEEEEeecCcce--eEEEEEEEcC
Q psy2775         470 QKLIIFSAGLEDAGEYSCRVGDTGDKE--SKATLTVEAP  506 (785)
Q Consensus       470 ~~L~i~~~~~~d~G~Y~C~a~n~g~~~--~~~~l~V~~~  506 (785)
                      ..|.|.+++..|+|.|+-...+.+...  ..+.|.|..+
T Consensus        89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~  127 (439)
T PF02480_consen   89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP  127 (439)
T ss_dssp             ---------------------------------------
T ss_pred             CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence            359999999999999999998763222  3355555554

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03283 envelope glycoprotein E; Provisional

Probab=86.65  E-value=7  Score=41.12  Aligned_cols=37  Identities=22%  Similarity=0.194  Sum_probs=28.7

Q ss_pred             eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       613 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      ..-|.|.+++. +++|.|+-...|+.+.....+.|.|+
T Consensus       133 ~~~l~I~~at~-~~aGVYtly~r~d~~~~~~vflvtVk  169 (542)
T PHA03283        133 RSVLQIQRATP-NIAGVYTLHVSSDGMMKHSVFFVTVK  169 (542)
T ss_pred             CCeeEEEeccc-ccCeEEEEEecCCCceEEEEEEEEec
Confidence            45599999999 99999999999988744444444444

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=86.28  E-value=11  Score=29.82  Aligned_cols=74  Identities=12%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             CCCeEeeeeeeeeeeec----CeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         557 QAPLFIERFEEKTVKEK----GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g----~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      .++.|+.+.....+...    +...|.+.+.|. .+.+.||-||..+.....        ...+.+..    ...|.|+-
T Consensus         9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~~~~----~~~G~h~l   75 (89)
T PF06832_consen    9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLFWQP----DRPGEHTL   75 (89)
T ss_pred             CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEEeCC----CCCeeEEE
Confidence            35666666554444333    356677777766 559999999999843322        12244432    46799999


Q ss_pred             EEEcCCcceEE
Q psy2775         633 VATNELGSATH  643 (785)
Q Consensus       633 ~a~n~~g~~~~  643 (785)
                      .+....|....
T Consensus        76 ~vvD~~G~~~~   86 (89)
T PF06832_consen   76 TVVDAQGRSAS   86 (89)
T ss_pred             EEEcCCCCEEE
Confidence            99998887654

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03282 envelope glycoprotein E; Provisional

Probab=85.82  E-value=25  Score=36.57  Aligned_cols=30  Identities=30%  Similarity=0.294  Sum_probs=23.4

Q ss_pred             EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE
Q psy2775         165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA  195 (785)
Q Consensus       165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  195 (785)
                      +..|+|.|...+++|-|.|.+..+ |..+.-
T Consensus       332 ~VdL~F~nAp~saSGLYVfVl~yN-GHVeAW  361 (540)
T PHA03282        332 TVNLQLRDASEASGGLYVCVVYVN-GHVHAW  361 (540)
T ss_pred             ccceEecCCCcccCceEEEEEEEC-Ceeeee
Confidence            347999999999999999998743 444443

>PHA03052 Hypothetical protein; Provisional

Probab=85.79  E-value=2.5  Score=30.53  Aligned_cols=35  Identities=17%  Similarity=0.397  Sum_probs=28.2

Q ss_pred             CCceEecCCCeEEEEEEEE-e--cCCCeeEEEECCEEc
Q psy2775          19 TKPVYAEENSEVTLEVRLV-A--VPEPDLLWYYNGEPL   53 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~-g--~p~~~i~W~~~~~~~   53 (785)
                      |..+.+..|.+++|.|.+. |  ...+.+.|..|+..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            4778899999999999994 2  234678999998876

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=84.22  E-value=19  Score=28.49  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             CCCceEeccCCcEEEEEEEeccCCC-eEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEE
Q psy2775         119 PLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN  197 (785)
Q Consensus       119 ~~~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  197 (785)
                      .+....+..|+++.+.|..+ -+.+ .+.|.-.   +..........-..+.+.+++. | ..-.|.+.-...+...++.
T Consensus         9 ~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~---L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~   82 (91)
T PF03921_consen    9 SPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETS---LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASAN   82 (91)
T ss_dssp             ESSEEEEETTEEEEEEEEES-SSS-SEEEEESS---SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEE
T ss_pred             ECCccEECCCCCEEEEEcCC-CCCCCcceEEEe---cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEe
Confidence            44567788999999999985 2333 4555321   1112222334455788888886 4 5668998866556667788


Q ss_pred             EEeecC
Q psy2775         198 LNVDPY  203 (785)
Q Consensus       198 l~V~~~  203 (785)
                      |+|+..
T Consensus        83 ItVY~~   88 (91)
T PF03921_consen   83 ITVYKP   88 (91)
T ss_dssp             EEEEB-
T ss_pred             eEEeCC
Confidence            888743

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PHA03281 envelope glycoprotein E; Provisional

Probab=83.69  E-value=13  Score=39.25  Aligned_cols=164  Identities=16%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             EEEEccCCCCCcEEEEEEEeec-Ccce-eEEEEEEEcCcccccccCCCe----------------eEEeccCceeEEEEe
Q psy2775         471 KLIIFSAGLEDAGEYSCRVGDT-GDKE-SKATLTVEAPAVEFLTKLPSV----------------TLVPHLGDATFQVEL  532 (785)
Q Consensus       471 ~L~i~~~~~~d~G~Y~C~a~n~-g~~~-~~~~l~V~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~  532 (785)
                      .|.|.+++..++|.|+--.... |... ..+-++|+..+..- .+.|.+                -++..+....+...+
T Consensus       299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~r-ip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L  377 (642)
T PHA03281        299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENH-IDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL  377 (642)
T ss_pred             eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccC-CCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence            6999999999999999877754 4333 35667776643111 111111                122223333444433


Q ss_pred             c------CCceeeEEeeccccccc---------CCCCCCCCCeEeeeee--------eeeeeecCeEEEEEEEecCCCCc
Q psy2775         533 S------SPDIQVKWLNLFIVPTC---------PLGSPGQAPLFIERFE--------EKTVKEKGTIRLMAKVKASPAPS  589 (785)
Q Consensus       533 ~------~~~~~~~W~~~~~~~~~---------~~~~~~~~p~~~~~~~--------~~~v~~g~~v~l~C~~~g~P~p~  589 (785)
                      .      .-...+.|+.-...-.|         +..+.  +|..+.+-.        -.....+..+.-.|...+.+++.
T Consensus       378 ~s~ihD~pFsleI~Wyy~p~~p~C~~mrIYEtCIFHP~--APeCL~Peda~CsFASP~ra~~Va~R~Y~nCs~~~~wp~~  455 (642)
T PHA03281        378 QYKIHDAPFDLLLEWLYVPIDPTCQPMRLYSACLYHEN--APQCLSHENPECTFASPHIAQRVANTVYQNCEHADNYTAD  455 (642)
T ss_pred             eeeccCCCceeEEEEEEecCCCCCceEEeecccccCCC--chhhcCcCCCCcccccchhHHHHHHHHhcCCCCCCCCCCC
Confidence            2      23667899876665434         33322  222222100        01122334445556654333221


Q ss_pred             eEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE-cCCcceEE
Q psy2775         590 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT-NELGSATH  643 (785)
Q Consensus       590 v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~-n~~g~~~~  643 (785)
                      -.   ....+.  ....+....+...|.+.++.. +++|.|.|++. |++-.+..
T Consensus       456 C~---sis~m~--p~~gL~~~~n~vdL~F~nApa-saSGLYVfVl~yNGHVeAWt  504 (642)
T PHA03281        456 CL---AISHME--PGFGLEIHDGGSALKFVDAAE-SLSGLYVFIIHFNGHVEAVA  504 (642)
T ss_pred             CC---cccccC--ccccccccCCCcceEeccCCc-ccCceEEEEEEECCeeeeeE
Confidence            11   000010  111122233445599999998 99999999998 55444443

>PHA03052 Hypothetical protein; Provisional

Probab=83.63  E-value=3.2  Score=29.98  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             CcEEeecCCeEEEEEEEe-cCC--CCceEEeECCEEeeecc
Q psy2775         702 PEVLVKKGEDLKIEVRFK-ALP--PPKAEWTVNGTVIVPSK  739 (785)
Q Consensus       702 ~~~~~~~g~~~~l~C~~~-g~P--~p~i~W~~~~~~~~~~~  739 (785)
                      ..+.+..|..++|.|++. |.|  .+.+.|.-|+..+..++
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d   45 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD   45 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence            456788999999999984 333  45788999999996654

>KOG1026|consensus

Probab=83.45  E-value=2.1  Score=47.70  Aligned_cols=158  Identities=13%  Similarity=0.166  Sum_probs=91.7

Q ss_pred             CeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEE
Q psy2775         424 DVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATL  501 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l  501 (785)
                      ...+..|..+++.|.+.+ +.+...|+.++............-.  .-...+.+        +.|.+.|. |....++.+
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~--------~~c~~E~~~~~~~~~v~~  270 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SECEVLEN--------DLCIAENAVARSNPSILL  270 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--ccceeeec--------hhhHHHHhhhhcCceeee
Confidence            345678999999999998 7788999987765533221111000  01111111        89999998 888888888


Q ss_pred             EEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEE
Q psy2775         502 TVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK  581 (785)
Q Consensus       502 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~  581 (785)
                      .+..+........+.-.                                                          .=.|.
T Consensus       271 ~~~~p~~~~~~~~~~~~----------------------------------------------------------~~~C~  292 (774)
T KOG1026|consen  271 VVDLPKAEVLLCSPLSD----------------------------------------------------------HHNCI  292 (774)
T ss_pred             EEecccccccCCCCccc----------------------------------------------------------cCcee
Confidence            88776433222211110                                                          11121


Q ss_pred             ---EecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         582 ---VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       582 ---~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                         +.+.|.+..+|..++..+...........+...-+....... .+.|.|+|.+.|..|.........+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h-~~~~~~~~~~e~~~g~~~~r~~g~~~  363 (774)
T KOG1026|consen  293 PIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPH-SHNGNYTLFPELPGGKNYCRNPGGFM  363 (774)
T ss_pred             eeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcc-cccCcceeeecccCccccccCcCccc
Confidence               226677788888877664322211111122101233444455 78999999999999987665555444

>KOG1026|consensus

Probab=82.53  E-value=1.5  Score=48.78  Aligned_cols=157  Identities=16%  Similarity=0.194  Sum_probs=91.7

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      ...+..|..+++.|.+.+.|.+.+.|+.++...............      -...+.+        +.|.+.|..+....
T Consensus       201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~------~~~~~~~--------~~c~~E~~~~~~~~  266 (774)
T KOG1026|consen  201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRS------ECEVLEN--------DLCIAENAVARSNP  266 (774)
T ss_pred             hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccc------cceeeec--------hhhHHHHhhhhcCc
Confidence            567789999999999999999999999887665443322111111      0011222        89999998887776


Q ss_pred             EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE---eccCCCeEEEeECCEEcccceE---EEeCCEEEEEEcccC
Q psy2775         101 DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQI---TSEKNTHTLTLIQCS  174 (785)
Q Consensus       101 ~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~---~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~~~  174 (785)
                      .+.+.+..    ++.........    ++  .-.|..   .++|.+...|..++..+.....   .......-+......
T Consensus       267 ~v~~~~~~----p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~  336 (774)
T KOG1026|consen  267 SILLVVDL----PKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPP  336 (774)
T ss_pred             eeeeEEec----ccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCc
Confidence            66666542    22111111100    00  222333   2566778899988776432211   011100122333335


Q ss_pred             CCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         175 TKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       175 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      ..+.|.|+|.+.+..|.........+.
T Consensus       337 h~~~~~~~~~~e~~~g~~~~r~~g~~~  363 (774)
T KOG1026|consen  337 HSHNGNYTLFPELPGGKNYCRNPGGFM  363 (774)
T ss_pred             ccccCcceeeecccCccccccCcCccc
Confidence            678999999999998876665555554

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=82.34  E-value=91  Score=34.98  Aligned_cols=313  Identities=16%  Similarity=0.183  Sum_probs=167.6

Q ss_pred             CCCCCeEEE--EEEEcCCee----EEEEeeEEEeCCCCCCCceec--CCCceEeccCCcEEEEEEEeccCCCeEEEeECC
Q psy2775          80 KKREEGVYT--VVAKNREGE----AKMDIPVKVNTGKPEKPSILE--PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG  151 (785)
Q Consensus        80 ~~~D~G~Y~--C~a~~~~~~----~~~~~~v~v~~~~~~~p~i~~--~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g  151 (785)
                      ....+|.|+  |.|......    +.......|.  +..++.|..  .........|+.+.|.+.+.|.-...++..-.|
T Consensus       251 ~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk--~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~llYrf~I~G  328 (667)
T PRK14081        251 KEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVK--PYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKELLYRFIIKG  328 (667)
T ss_pred             EeCCCccEEEEEEEeccCcccccccceEEEEEEe--cCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCceEEEEEECC
Confidence            356899995  677655432    2233334442  223344421  112233467999999999987655555555455


Q ss_pred             EEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCC--e----eEEEEEEEEeecCCCCCCCCCCCCCCCccccccce
Q psy2775         152 KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE--G----TVESAANLNVDPYEPKESKETPPSPPPYVVSELDT  225 (785)
Q Consensus       152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~  225 (785)
                      ..+....   -.....+..   .+..+|.|...+.-..  .    .....+.+.|....                     
T Consensus       329 ~~~e~~~---Y~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~---------------------  381 (667)
T PRK14081        329 KESEDSG---YIRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKS---------------------  381 (667)
T ss_pred             cEEeecc---ccccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccC---------------------
Confidence            4432211   111223333   3457899987765222  1    12233455554321                     


Q ss_pred             eeecCCCCCCCe-ee--ecCCcceeCCCCeEEEEEEEccCCCCeEE-E-EECCEEcccceEEEeCCEEEEEEccCCCCCC
Q psy2775         226 LQVNTGKPEKPS-IL--EPLHDVSITEGESAVLSVQVGGEPSPKVE-W-YKDGKLIKDRQITSEKNTHTLTLIQCSTKDK  300 (785)
Q Consensus       226 ~~~~~~~~~~p~-~~--~~~~~~~~~~G~~~~l~C~~~g~p~~~v~-W-~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~  300 (785)
                              ..|. +.  .......+..|+.+.+.|.+.|.-...++ | .++|..+......   ....+.+   .+.-+
T Consensus       382 --------~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~---~~~~~~f---~P~~~  447 (667)
T PRK14081        382 --------KEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYG---KNNWVNF---IPEEK  447 (667)
T ss_pred             --------CCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecc---cccEEEE---EECCC
Confidence                    1122 11  11223455679999999999765545444 3 3477766522111   1123333   34678


Q ss_pred             eEEEEEEE--eCCC----ceEEEEEEEEeccccc-ee--eeccceeEeeCccEEEEEEEcCC-CCeEE--EEECCEEcCC
Q psy2775         301 GRYSVKVT--NKEG----TVESAANLNVDQGKAE-FI--KKLDDLEVKERENAVLEVEVTSD-KADVK--WFKDGQEIKT  368 (785)
Q Consensus       301 G~Y~C~~~--n~~g----~~~~~~~l~v~~~~~~-~~--~~~~~~~~~~g~~~~l~C~~~~~-~~~v~--W~~~~~~l~~  368 (785)
                      |.|+-.+.  +...    .....+.+.|.+..|. ..  ..+.......|+.+++.|.+.+. ...+.  -+.+|..+..
T Consensus       448 G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~  527 (667)
T PRK14081        448 GNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEE  527 (667)
T ss_pred             eeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEE
Confidence            99988775  3222    2244577888875554 22  22334557889999999998874 33333  3356654422


Q ss_pred             CCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEe--c--------cceEEEEEEEecCCcccc--cCCCeEEecCCcEEEE
Q psy2775         369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP--D--------QETSAELNVVELPPEISV--PLQDVKVSRDEKASFE  436 (785)
Q Consensus       369 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n--------~~~~~~~~v~~~~~~~~~--~~~~~~v~~g~~~~l~  436 (785)
                      .. +  ....   .+.+.   +.-+|.|+-.+-  |        ......+.|.+..|....  ......+..|+.+++.
T Consensus       528 t~-Y--s~~~---~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~  598 (667)
T PRK14081        528 TD-Y--IKNK---KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFS  598 (667)
T ss_pred             ee-c--cccc---eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEE
Confidence            11 0  0111   13333   444788987763  2        233455556554333322  2355567789999999


Q ss_pred             EEEeCCCc
Q psy2775         437 IELTKGDA  444 (785)
Q Consensus       437 C~~~~~~~  444 (785)
                      ....|+..
T Consensus       599 ~~~~gg~~  606 (667)
T PRK14081        599 VKSEGGKD  606 (667)
T ss_pred             EEccCCCc
Confidence            88887644

>PHA03286 envelope glycoprotein E; Provisional

Probab=82.26  E-value=13  Score=38.28  Aligned_cols=97  Identities=19%  Similarity=0.097  Sum_probs=55.7

Q ss_pred             CeEEEEEccCCCCCCceeEEEEEEcCCcceEEE-EEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCcc
Q psy2775         612 ENIILELKEADSETDAGDYKVVATNELGSATHG-ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPV  690 (785)
Q Consensus       612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (785)
                      ...-|+|.+++. .++|.|+-...|+.|....+ +-|.|...+..+|+..-....+.+                      
T Consensus       125 ~~~~L~I~nAt~-qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~----------------------  181 (492)
T PHA03286        125 RGKELTILNASS-QNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPS----------------------  181 (492)
T ss_pred             CCCceEEeeccc-cccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcc----------------------
Confidence            334599999999 99999999999987764433 444454332222221111111110                      


Q ss_pred             ccCCCcCCCCCCcEEeecCCeEEEEEEEe-c-CCCC---ceEEeECC
Q psy2775         691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFK-A-LPPP---KAEWTVNG  732 (785)
Q Consensus       691 ~~~P~i~~~~~~~~~~~~g~~~~l~C~~~-g-~P~p---~i~W~~~~  732 (785)
                       ....+...........+|+++.|.-... + ...+   .|.|++-.
T Consensus       182 -~~~~f~l~ny~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y~p  227 (492)
T PHA03286        182 -TRVDLSLKNFKAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLFLP  227 (492)
T ss_pred             -cceEEEEecccceEecCCCeEEEEEEEeecccCCCceEEEEEEEec
Confidence             1112222344555677899998887765 3 2233   68898643

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=82.03  E-value=5.2  Score=31.47  Aligned_cols=68  Identities=18%  Similarity=0.347  Sum_probs=43.1

Q ss_pred             EEEEEEE-eccCCCeEEEeE--CCEEcccceEEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775         131 AVLSVQV-GGEPSPKVEWYK--DGKLIKDRQITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  199 (785)
Q Consensus       131 v~l~C~~-~g~p~~~v~W~~--~g~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  199 (785)
                      +.-+|.+ .|.|++.|+|.-  +|.. ........++    .+.+.+......|.-..+|.+.+.......++.|+
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            5668985 789999999974  3332 1111111121    24566777788899999999988754444445554

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA03282 envelope glycoprotein E; Provisional

Probab=81.16  E-value=9.3  Score=39.48  Aligned_cols=37  Identities=30%  Similarity=0.305  Sum_probs=25.2

Q ss_pred             eEEEEEccCCCCCCceeEEEEEEcCCcceE--EEEEEEEE
Q psy2775         613 NIILELKEADSETDAGDYKVVATNELGSAT--HGARVTVD  650 (785)
Q Consensus       613 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~  650 (785)
                      +.+|.|.+++. +|+|.|+-.+...-....  ....|.|.
T Consensus       123 n~tl~l~~a~~-~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        123 NGTLVLREARE-TDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             cceEEEeeccc-cCCceEEEEecCCCCchhheEEEEEEec
Confidence            34599999999 999999999764433333  33444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	785
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-33
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-27
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		8e-21
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-07
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-05
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-19
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		8e-18
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		3e-08
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-19
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-17
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-08
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-19
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-18
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		2e-16
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-07
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		3e-12
2dlt_A	106	Solution Structure Of The Ig-Like Domain(433- 525)		1e-11
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-10
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-06
3kld_A	384	Ptprg Cntn4 Complex Length = 384		8e-06
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		1e-10
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-06
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		1e-10
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-06
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-10
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-06
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		8e-06
2e7b_A	103	Solution Structure Of The 6th Ig-Like Domain From H		2e-10
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-10
2yz8_A	103	Crystal Structure Of The 32th Ig-Like Domain Of Hum		4e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		5e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-09
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		1e-06
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		4e-04
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-09
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		1e-05
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		3e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		2e-09
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		4e-06
2edf_A	103	Solution Structure Of The Second Ig-Like Domain(282		3e-09
2edf_A	103	Solution Structure Of The Second Ig-Like Domain(282		1e-06
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-09
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		1e-05
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-04
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		3e-09
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		4e-09
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		4e-07
2yxm_A	100	Crystal Structure Of I-Set Domain Of Human Myosin B		6e-09
2edl_A	110	Solution Structure Of The Ig-Like Domain (3801-3897		1e-08
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		1e-08
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-05
2cpc_A	113	Solution Structure Of Rsgi Ruh-030, An Ig Like Doma		2e-08
2cpc_A	113	Solution Structure Of Rsgi Ruh-030, An Ig Like Doma		6e-06
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		3e-08
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		4e-04
2edw_A	107	Solution Structure Of The I-Set Domain (3537-3630)		3e-08
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		1e-07
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		2e-06
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		7e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		7e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-07
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		1e-04
2eo1_A	102	Solution Structure Of The Ig Domain Of Human Obscn		3e-07
2eo1_A	102	Solution Structure Of The Ig Domain Of Human Obscn		4e-06
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		6e-07
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		6e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2e6p_A	104	Solution Structure Of The Ig-Like Domain (714-804)		9e-07
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		9e-07
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		9e-07
2dm7_A	108	Solution Structure Of The 14th Ig-Like Domain Of Hu		1e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		1e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		6e-05
2edr_A	102	Solution Structure Of The Ig-Like Domain (3361-3449		1e-06
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		3e-06
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		6e-06
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		6e-06
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		2e-04
1pd6_A	104	The Nmr Structure Of Domain C2 Of Human Cardiac Myo		5e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		5e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		4e-04
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		6e-06
2edq_A	107	Solution Structure Of The Ig-Like Domain (3713-3806		8e-06
2edq_A	107	Solution Structure Of The Ig-Like Domain (3713-3806		5e-04
1x44_A	103	Solution Structure Of The Third Ig-Like Domain Of M		9e-06
1x44_A	103	Solution Structure Of The Third Ig-Like Domain Of M		1e-04
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		1e-05
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		1e-05
2lvc_A	91	Solution Nmr Structure Of Ig Like Domain (805-892)		2e-05
2lvc_A	91	Solution Nmr Structure Of Ig Like Domain (805-892)		2e-05
2edh_A	113	Solution Structure Of The Pdz Domain (3614- 3713 )		2e-05
2edh_A	113	Solution Structure Of The Pdz Domain (3614- 3713 )		4e-04
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-04
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-05
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-05
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		6e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-05
2gqh_A	107	Solution Structure Of The 15th Ig-Like Domain Of Hu		3e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		3e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		3e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		1e-04
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		4e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		4e-05
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		4e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		4e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		4e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		1e-04
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		4e-05
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		4e-05
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		4e-05
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		5e-04
2rq8_A	98	Solution Nmr Structure Of Titin I27 Domain Mutant L		5e-05
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		5e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		5e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		5e-05
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		6e-05
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		6e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		6e-05
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		6e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		6e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		6e-05
1waa_A	93	Ig27 Protein Domain Length = 93		6e-05
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-05
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		7e-05
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		7e-05
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		7e-05
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		8e-05
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		8e-05
2edt_A	102	Solution Structure Of The Ig-Like Domain (3449-3537		8e-05
2k1m_A	95	3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Bi		1e-04
1waa_F	93	Ig27 Protein Domain Length = 93		1e-04
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		1e-04
1g1c_A	99	I1 Domain From Titin Length = 99		1e-04
1g1c_A	99	I1 Domain From Titin Length = 99		1e-04
2vaj_A	93	Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit) Le		1e-04
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-04
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-04
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
1waa_E	93	Ig27 Protein Domain Length = 93		2e-04
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		2e-04
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		2e-04
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		3e-04
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		3e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		4e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		4e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-04
3qp3_A	103	Crystal Structure Of Titin Domain M4, Tetragonal Fo		5e-04
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		7e-04
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		7e-04
1tit_A	98	Titin, Ig Repeat 27, Nmr, Minimized Average Structu		7e-04
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		7e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		8e-04
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		8e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 222/524 (42%), Gaps = 53/524 (10%)
Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP F +  + V A     +TL+ ++   PE  + WY     L+         ++++ S V
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
               I  +   + G YT  A+N  G A     V V   +   PS    L DV  T G   
Sbjct: 65  ----INKVDHSDVGEYTCKAENSVG-AVASSAVLVIKERKLPPSFARKLKDVHETLGFPV 119
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
               ++ G    +V WYKDG+L+KD    Q +   N  TL ++Q      G+Y+   +N 
Sbjct: 120 AFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP 179
Query: 189 EGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSI--LEPLHDVS 246
            GT  S+A L +                                 E P    L+P+  V 
Sbjct: 180 LGTASSSAKLTLSEH------------------------------EVPPFFDLKPV-SVD 208
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRY 303
           +  GES      V G    K+ W KD + I+   + ++T  +NT TLT+++ +  D G+Y
Sbjct: 209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEV-TSDKADVKWFK 361
           +   +N  G    +A L V Q    FIKKL+    VK+ E+   E ++  S +  V W+K
Sbjct: 269 TCYASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK 327
Query: 362 DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV---VELPPEI 418
           D  EI+ S K  +    ++  L + N+SV D G+YTC   +   SA  +    V+ PP  
Sbjct: 328 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387
Query: 419 SVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA 477
                 V+  +      E EL       V W+KD +E+   +   +  +     + I + 
Sbjct: 388 RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 447
Query: 478 GLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLV 520
              D GEY C+   D G      ++T++AP   F+ KL  ++ V
Sbjct: 448 DSADIGEYQCKASNDVGSDTCVGSITLKAPP-RFVKKLSDISTV 490

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 139/601 (23%), Positives = 233/601 (38%), Gaps = 93/601 (15%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNT 165
           G  E P  +EPL  V    GE   L  +V G P  ++ WYK+   ++     ++  + N 
Sbjct: 1   GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDT 225
            +L + +    D G Y+ K  N  G V S+A L +                         
Sbjct: 61  ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKE----------------------- 97
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQIT 282
                 +   PS    L DV  T G       ++ G    +V WYKDG+L+KD    Q +
Sbjct: 98  ------RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS 151
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE--FIKKLDDLEVKE 340
              N  TL ++Q      G+Y+   +N  GT  S+A L + + +    F  K   +++  
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 341 RENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
            E+   +  VT      + W KD +EI+      +        L +  ++  D G+YTC 
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 400 LPD----QETSAELNVVELPPEISVPLQDVK-VSRDEKASFEIELTKGDAL-VKWYKDGK 453
             +       SA+L V E PP     L+  + V +DE   +E ++     + V WYKD  
Sbjct: 272 ASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET 330
Query: 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLT 512
           EI  S    +S       L +++  +ED+G+Y+C   +  G   S  +L V+ P V    
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV--FR 388
Query: 513 KLPSVTLVPHLGDATFQVEL-SSPDIQVKW-----------------------LNLFIVP 548
           K P         D   + EL  +P  QV W                       +++  V 
Sbjct: 389 KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVD 448
Query: 549 TCPLG-------------------SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
           +  +G                   +    P F+++  + +      ++L A ++ +   S
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPIS 508
Query: 590 IVWFRNNKPLLSSPKKREIFDGENI-ILELKEADSETDAGDYKVVATNELGSATHGARVT 648
           + WF++   ++       I   ENI  L+   A+   +AG Y     NE G+    A ++
Sbjct: 509 VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP-ANAGKYTCQIKNEAGTQECFATLS 567
Query: 649 V 649
           V
Sbjct: 568 V 568

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 186/499 (37%), Gaps = 66/499 (13%)
Query: 27  NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV 86
           +S + L       P P   WY   E       VV +D+    S    + IK     + G 
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVS--GTLIIKDAVVEDSGK 320
Query: 87  YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE 146
           Y  V  N  G   ++  + V    P    I  P   V    G  AV + Q  G P   V 
Sbjct: 321 YLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPAVFTCQYTGNPIKTVS 376
Query: 147 WYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXX 206
           W KDGK I   +         L +     +DKG Y   V N   + E++A L +      
Sbjct: 377 WMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG----- 424
Query: 207 XXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK 266
                                   G+ + P I +   + ++  G S  L    GG P+P+
Sbjct: 425 ------------------------GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPE 460
Query: 267 VEWYKDGKLI--KDRQITSEKNT------HTLTLIQCSTKDKGRYSVKVTNKEGTVESAA 318
           + W  DGK I   DR    +  T        L +      D G Y     +K G  E +A
Sbjct: 461 ISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA 520
Query: 319 NLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD-VKWFKDGQEIKTSKKVTIEKK 377
            LNV      +I++++   +   E  ++   V     D + W +D + +  ++K  +   
Sbjct: 521 KLNVY--GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPN 578
Query: 378 GTIRKLLIRNISVH-DEGEYTCSLPDQE-----TSAELNVVELPPEISVPLQDVKVSRDE 431
           GT   L+I N+  + D+  YTC   +QE      S E+ V+ LP  I    ++      +
Sbjct: 579 GT---LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQ 635
Query: 432 KASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA-GLEDAGEYSCR 488
             +    +  GD    + W  DG+ I+    +T S  G++  ++   A     AG ++C 
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCH 695
Query: 489 VGD-TGDKESKATLTVEAP 506
             +  G ++    L V  P
Sbjct: 696 ARNLAGHQQFTTPLNVYVP 714

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 162/424 (38%), Gaps = 91/424 (21%)
Query: 244 DVSITEGESAV-LSVQVGGEPSPKVEWYK--DGKLIKDRQITSEKN---THTLTLIQCST 297
           D+    G S + L     G P P   WYK  +G   K   + +++    + TL +     
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315
Query: 298 KDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD--DLEVKERENAVLEVEVTSDKA 355
           +D G+Y   V N  G       L V    A    K+D     V     AV   + T +  
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372
Query: 356 -DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL 414
             V W KDG+ I  S+ V          L I ++   D+G Y C + +   SAE +  EL
Sbjct: 373 KTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEASA-EL 421
Query: 415 -------PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSI 465
                  PP I    Q+ +      + F   +  G+    + W  DGK+IA ++   +  
Sbjct: 422 KLGGRFDPPVIRQAFQE-ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV-- 478
Query: 466 DGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
                            G+Y               +TV    V +L    ++T V H  D
Sbjct: 479 -----------------GQY---------------VTVNGDVVSYL----NITSV-HAND 501
Query: 526 ATFQVELSSPDIQVKW----LNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
                 ++   + V      LN++ +P            +I + E+K +    T+ +   
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLNVYGLP------------YIRQMEKKAIVAGETLIVTCP 549
Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
           V   P  SIVW R+N+ L  + +K+++F    +I+E  E +S  D   Y  VA N+ G +
Sbjct: 550 VAGYPIDSIVWERDNRALPIN-RKQKVFPNGTLIIENVERNS--DQATYTCVAKNQEGYS 606
Query: 642 THGA 645
             G+
Sbjct: 607 ARGS 610

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 120/305 (39%), Gaps = 74/305 (24%)
Query: 358 KWFK--DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
           +W+K  +G   K +  +    K     L+I++  V D G+Y C    S+  +     L V
Sbjct: 281 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Query: 412 VE-LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGK 468
              L  +I  P Q V   R   A F  + T G+ +  V W KDGK I  SE+V L I+  
Sbjct: 341 TAPLSAKIDPPTQTVDFGR--PAVFTCQYT-GNPIKTVSWMKDGKAIGHSESV-LRIESV 396
Query: 469 KQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
           K+         ED G Y C V +  D+ES      EA A                     
Sbjct: 397 KK---------EDKGMYQCFVRN--DRES-----AEASA--------------------- 419
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
             EL                   LG     P+  + F+E+T++   ++ L      +P P
Sbjct: 420 --ELK------------------LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP 459
Query: 589 SIVWFRNNKPLLSSPK----KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
            I W  + K + ++ +    +    +G+ +      +    D G YK +A +++G A H 
Sbjct: 460 EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHS 519
Query: 645 ARVTV 649
           A++ V
Sbjct: 520 AKLNV 524

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 37/219 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 166
           + P+  +PL  V + EG +A     + G P P+V W++DG++I        QI+      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTL 226
            LT+   +  + GRYS+K TN  G   S A L V                          
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV-------------------------- 97
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
                +   P+ ++ L  +++ +G    L V+V G P+P V++Y+DG  I+   D QI+ 
Sbjct: 98  ---KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ 154
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           E + ++L + +   +D G YSV  TN  G   S A L V
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 288
           + P+  +PL  V + EG +A     + G P P+V W++DG++I        QI+      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKERENAVL 346
            LT+   +  + GRYS+K TN  G   S A L V    A   F+++L  + V++     L
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 347 EVEVTSDKAD-VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY----TCSLP 401
           +V VT      VK+++DG EI++S    I ++G +  LLI      D G Y    T S+ 
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 402 DQETSAELNV 411
              ++AEL V
Sbjct: 184 RATSTAELLV 193

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 54/238 (22%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYKDGKEIAFSE--NVTLSIDGKKQKL 472
           P  + PLQ V V     A+FE  ++      V W++DG+ I+ S    V +S    + KL
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 473 IIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
            I +    ++G YS +  + +G   S A L V+A                          
Sbjct: 66  TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE------------------------- 100
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
                            T P       P F++R +  TV++   +RL  +V   P P + 
Sbjct: 101 -----------------TAP-------PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK 136
Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           ++R+   + SS   +   +G+   L + EA  E D+G Y V ATN +G AT  A + V
Sbjct: 137 FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGRATSTAELLV 193

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 38/227 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 166
           + P+  +PL  V + EG +A     + G P P+V W++DG++I        QI+      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTL 226
            LT+   +  + GRYS+K TN  G   S A L V                          
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV-------------------------- 97
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
                +   P+ ++ L  +++ +G    L V+V G P+P V++Y+DG  I+   D QI+ 
Sbjct: 98  ---KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ 154
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD-QGKAEF 329
           E + ++L + +   +D G YSV  TN  G   S A L V  + + EF
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGETREEF 201

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 288
           + P+  +PL  V + EG +A     + G P P+V W++DG++I        QI+      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKERENAVL 346
            LT+   +  + GRYS+K TN  G   S A L V    A   F+++L  + V++     L
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 347 EVEVTSDKAD-VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY----TCSLP 401
           +V VT      VK+++DG EI++S    I ++G +  LLI      D G Y    T S+ 
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 402 DQETSAELNV 411
              ++AEL V
Sbjct: 184 RATSTAELLV 193

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 54/241 (22%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSE--NVTLSIDGKKQKL 472
           P  + PLQ V V     A+FE  ++      V W++DG+ I+ S    V +S    + KL
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 473 IIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
            I +    ++G YS +  + +G   S A L V+A                          
Sbjct: 66  TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE------------------------- 100
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
                            T P       P F++R +  TV++   +RL  +V   P P + 
Sbjct: 101 -----------------TAP-------PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK 136
Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           ++R+   + SS   +   +G+   L + EA  E D+G Y V ATN +G AT  A + V  
Sbjct: 137 FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGRATSTAELLVQG 195
Query: 652 E 652
           E
Sbjct: 196 E 196

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 12/277 (4%)
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 295
           L+P+  V +  GES      V G    K+ W KD + I+   + ++T  +NT TLT+++ 
Sbjct: 10  LKPV-SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVT-SD 353
           +  D G+Y+   +N  G    +A L V Q    FIKKL+    VK+ E+   E ++  S 
Sbjct: 69  TKGDAGQYTCYASNVAGKDSCSAQLGV-QAPPRFIKKLEPSRIVKQDEHTRYECKIGGSP 127
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
           +  V W+KD  EI+ S K  +    ++  L + N+SV D G+YTC   +   SA  +   
Sbjct: 128 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187
Query: 412 -VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKK 469
            V+ PP        V+  +      E EL       V W+KD +E+   +   +  +   
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
             + I +    D GEY C+   D G      ++T++A
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 114/281 (40%), Gaps = 49/281 (17%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSENVTLSIDGKKQKL 472
           PP   +    V ++  E  +F+  +T G A +K  W KD +EI    N  +++      L
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
            +      DAG+Y+C   +   K+S  A L V+AP   F+ KL    +V       ++ +
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPP-RFIKKLEPSRIVKQDEHTRYECK 122
Query: 532 L-SSPDIQVKW-----------------------LNLFIVP-------TCPLGSPG---- 556
           +  SP+I+V W                       L ++ +        TC   +      
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 557 --------QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 608
                   + P+F ++       +   + L  +++ +P   + W ++ + L S  K + +
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +     + +   DS  D G+Y+  A+N++GS T    +T+
Sbjct: 243 SENFLTSIHILNVDS-ADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 12/277 (4%)
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 295
           L+P+  V +  GES      V G    K+ W KD + I+   + ++T  +NT TLT+++ 
Sbjct: 10  LKPV-SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVT-SD 353
           +  D G+Y+   +N  G    +A L V Q    FIKKL+    VK+ E+   E ++  S 
Sbjct: 69  TKGDAGQYTCYASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP 127
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
           +  V W+KD  EI+ S K  +    ++  L + N+SV D G+YTC   +   SA  +   
Sbjct: 128 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187
Query: 412 -VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKK 469
            V+ PP        V+  +      E EL       V W+KD +E+   +   +  +   
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
             + I +    D GEY C+   D G      ++T++A
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 113/281 (40%), Gaps = 49/281 (17%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSENVTLSIDGKKQKL 472
           PP   +    V ++  E  +F+  +T G A +K  W KD +EI    N  +++      L
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
            +      DAG+Y+C   +   K+S  A L V+ P   F+ KL    +V       ++ +
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP-RFIKKLEPSRIVKQDEHTRYECK 122
Query: 532 L-SSPDIQVKW-----------------------LNLFIVP-------TCPLGSPG---- 556
           +  SP+I+V W                       L ++ +        TC   +      
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 557 --------QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 608
                   + P+F ++       +   + L  +++ +P   + W ++ + L S  K + +
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +     + +   DS  D G+Y+  A+N++GS T    +T+
Sbjct: 243 SENFLTSIHILNVDS-ADIGEYQCKASNDVGSYTCVGSITL 282

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 36/219 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDR--QITSEKNTHTL 168
           E P I + + DV+   GE+A LS Q+ G P P ++WY+ GK LI+ R  +++S+  THTL
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
           T++    +D+G Y+   TN+ G VE+++ L +                        T Q 
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA----------------------TPQF 103
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-ITSEKNT 287
           + G P K      +       G +  L V   G P P + W+   KL+++ + IT E   
Sbjct: 104 HPGYPLKEKYYGAV-------GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156
Query: 288 HTLTLIQCSTKDK---GRYSVKVTNKEGTVESAANLNVD 323
           H   L+  + + K   G+Y V+++N  GTV++  ++ + 
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 88/230 (38%), Gaps = 57/230 (24%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLI 473
           P I   ++DV     E A    ++  G  L  +KWY+ GKE+  S    +S DG+   L 
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 474 IFSAGLEDAGEYSC-RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
           + +   ED G Y+C    + G+ E+ + L ++A                           
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA--------------------------- 99
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKASPAPSIV 591
            +P            P  PL             +EK     G T+RL       P P++ 
Sbjct: 100 -TPQFH---------PGYPL-------------KEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Query: 592 WFRNNKPLLSSPKKREIFDGENII-LELKEADSETDAGDYKVVATNELGS 640
           WF   K LL + +   I + E+   L +K    +T AG YKV  +N  G+
Sbjct: 137 WFHGQK-LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT 185

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           G+AP   +  ++ T K     +L  ++   P P I W+R  K L+ S K +   DG    
Sbjct: 5   GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 616 LELKEADSETDAGDYKVVATNELG 639
           L +   + E D G Y  +ATNE+G
Sbjct: 65  LTVMTEEQE-DEGVYTCIATNEVG 87

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 190/494 (38%), Gaps = 73/494 (14%)
Query: 65  SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI-----LEP 119
           S+M  ++S +TI  + + ++G+YT  A +     K    V+V+    EKP +     +E 
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMES 338
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 179
           L  V  T GE   +  +  G P P+++WYK+G  ++       K  H LT+++ S +D G
Sbjct: 339 L--VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEVSERDTG 394
Query: 180 RYSVKVTN-----KEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPE 234
            Y+V +TN     K+  V S                            L         P 
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH 454
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL---- 290
                  L +    E   AV SV     P P  EW          +I   KN   L    
Sbjct: 455 HIHWYWQLEEECANEPSQAV-SVT---NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGK 510
Query: 291 -----TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAV 345
                TL+  +      Y  +  NK G  E   + +V +G    I    D++  E+E+  
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPE--ITLQPDMQPTEQESVS 568
Query: 346 LEVEVTSDKA---DVKWFKDGQE--------------------IKTSKKVTIEKKGTIRK 382
           L    T+D++   ++ W+K G +                     K +  +       I  
Sbjct: 569 L--WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 383 LLIRNISVHDEGEYTCSLPDQETS------AELNVVE-LPPEISVPLQDVKVSRDEKASF 435
           + ++N S+ D+G+Y C   D++T        +L V+E + P I+  L++   S  E  S 
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGE--SI 684
Query: 436 EIELTKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT 492
           E+  T        + W+KD + +     + L  DG +  L I     ED G Y+C+    
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLK-DGNR-NLTIRRVRKEDEGLYTCQACSV 742
Query: 493 -GDKESKATLTVEA 505
            G  + +A   +E 
Sbjct: 743 LGCAKVEAFFIIEG 756

>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of Murine Myosin-Binding Protein C, Fast-Type Length = 106

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G+ E ++ + DL VK  E AV + EV+ +K   KW+K+G E++ SK++TI   G   KL+
Sbjct: 7   GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 385 IRNISVHDEGEYTCSLPDQET---SAELNVVEL 414
           I ++   DEG+YT  +PD      SA+LN +E+
Sbjct: 67  IDDVRPEDEGDYTF-VPDGYALSLSAKLNFLEI 98

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 22  VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK 81
           V AE+ + V LE   +  P P +LW       +  D    + ++  H    I+ I + ++
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILW-------RRADGKPIARKARRHKSNGILEIPNFQQ 267
Query: 82  REEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG 139
            + G Y  VA+N  G+  AK  +          +P+ ++ ++D+ +   ES     +  G
Sbjct: 268 EDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANG 321
Query: 140 EPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
            P P   W K+G   L +DR I  E+ T  +T++  S  D G Y     NK G + S+A 
Sbjct: 322 RPKPTYRWLKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAE 378
Query: 198 LNV 200
           L+V
Sbjct: 379 LSV 381

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 105/295 (35%), Gaps = 68/295 (23%)
Query: 46  WYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105
           W +N  P  + D   F  Q   + Y++      ++K + G YT V  N     K+     
Sbjct: 137 WIFNEYPSYQ-DNRRFVSQETGNLYIA-----KVEKSDVGNYTCVVTNTVTNHKVL---- 186
Query: 106 VNTGKPEKPSIL---------EPLHDVSITE------GESAVLSVQVGGEPSPKVEWYK- 149
                P  P IL         EP  +V   E      G +  L     G P P + W + 
Sbjct: 187 ----GPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242
Query: 150 DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXX 209
           DGK I  R+    K+   L +     +D G Y     N  G   +   L           
Sbjct: 243 DGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------- 294
Query: 210 XXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 269
                                    +P+ ++ ++D+ +   ES     +  G P P   W
Sbjct: 295 -------------------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329
Query: 270 YKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            K+G   L +DR I  E+ T  +T++  S  D G Y     NK G + S+A L+V
Sbjct: 330 LKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAELSV 381

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 249 EGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
           +G +  L     G P P + W + DGK I  R+    K+   L +     +D G Y    
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVA 277
Query: 308 TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI 366
            N  G   +   L     +  +++ ++D+ V   E+   E +     K   +W K+G  +
Sbjct: 278 ENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 367 KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE----TSAELNVV 412
            T  ++ IE +GT+  + I N+S  D G Y C   ++     +SAEL+V+
Sbjct: 337 LTRDRIQIE-QGTL-NITIVNLS--DAGMYQCVAENKHGVIFSSAELSVI 382

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
            G+ + P I+E   D+ + + E A L+ +V G+P P +EW+KDG+ +     T+EK +H 
Sbjct: 4   AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHR 59
Query: 290 L-----------TLIQCSTKDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLE 337
           +           T+     +D G Y     N+ G  V   A+L +   + +F  +  D  
Sbjct: 60  VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR 119
Query: 338 VKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISV 390
           V + E A+LE        +  + W KDG  +   K ++      +R      LLI N+  
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 391 HDEGEYTC 398
            DEG Y C
Sbjct: 180 IDEGNYKC 187

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR---E 607
           PL    Q+P  IE   +  VK+     L  KV+  P P+I WF++ +P+ ++ KK    +
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSA 641
             DG        +   E D G+Y  VA N +G A
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
            G+ + P I+E   D+ + + E A L+ +V G+P P +EW+KDG+ +     T+EK +H 
Sbjct: 4   AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHR 59
Query: 290 L-----------TLIQCSTKDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLE 337
           +           T+     +D G Y     N+ G  V   A+L +   + +F  +  D  
Sbjct: 60  VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR 119
Query: 338 VKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISV 390
           V + E A+LE        +  + W KDG  +   K ++      +R      LLI N+  
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 391 HDEGEYTC 398
            DEG Y C
Sbjct: 180 IDEGNYKC 187

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR---E 607
           PL    Q+P  IE   +  VK+     L  KV+  P P+I WF++ +P+ ++ KK    +
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSA 641
             DG        +   E D G+Y  VA N +G A
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 22  VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK 81
           V AE+ + V LE   +  P P +LW       +  D    + ++  H    I+ I + ++
Sbjct: 214 VPAEKGTTVKLECFALGNPVPTILW-------RRADGKPIARKARRHKSNGILEIPNFQQ 266
Query: 82  REEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG 139
            + G Y  VA+N  G+  AK  +          +P+ ++ ++D+ +   ES     +  G
Sbjct: 267 EDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANG 320
Query: 140 EPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
            P P   W K+G   L +DR I  E+ T  +T++  S  D G Y     NK G + S+A 
Sbjct: 321 RPKPTYRWLKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAE 377
Query: 198 LNV 200
           L+V
Sbjct: 378 LSV 380

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 105/295 (35%), Gaps = 68/295 (23%)
Query: 46  WYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105
           W +N  P  + D   F  Q   + Y++      ++K + G YT V  N     K+     
Sbjct: 136 WIFNEYPSYQ-DNRRFVSQETGNLYIA-----KVEKSDVGNYTCVVTNTVTNHKVL---- 185
Query: 106 VNTGKPEKPSIL---------EPLHDVSITE------GESAVLSVQVGGEPSPKVEWYK- 149
                P  P IL         EP  +V   E      G +  L     G P P + W + 
Sbjct: 186 ----GPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 241
Query: 150 DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXX 209
           DGK I  R+    K+   L +     +D G Y     N  G   +   L           
Sbjct: 242 DGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------- 293
Query: 210 XXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 269
                                    +P+ ++ ++D+ +   ES     +  G P P   W
Sbjct: 294 -------------------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 328
Query: 270 YKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            K+G   L +DR I  E+ T  +T++  S  D G Y     NK G + S+A L+V
Sbjct: 329 LKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAELSV 380

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 249 EGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
           +G +  L     G P P + W + DGK I  R+    K+   L +     +D G Y    
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVA 276
Query: 308 TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI 366
            N  G   +   L     +  +++ ++D+ V   E+   E +     K   +W K+G  +
Sbjct: 277 ENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 367 KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE----TSAELNVV 412
            T  ++ IE +GT+  + I N+S  D G Y C   ++     +SAEL+V+
Sbjct: 336 LTRDRIQIE-QGTL-NITIVNLS--DAGMYQCVAENKHGVIFSSAELSVI 381

>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human Kiaa1556 Length = 103

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G   F + L DLEV E   A L   ++S  A VKW      ++   K ++ ++G + +L+
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
           +RN+   D G Y+CS  DQ TSA L V  LP
Sbjct: 67  VRNLRPQDSGRYSCSFGDQTTSATLTVTALP 97

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTL 290
           P+ P I  PL  V     E A     V   P P++ W ++  LIK  D + +  +N   L
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 291 TLIQCSTKDKGRYSVKVTNK-EGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVE 349
           T++     D G Y     N   G VES   L V   K +  +   ++++ E   AVL   
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM-KPKITRPPINVKIIEGLKAVLPCT 123
Query: 350 VTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE 408
              + K  V W K    ++ + ++ + + G++R   I N+   D G+Y C   +   +A 
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESGSLR---IHNVQKEDAGQYRCVAKNSLGTAY 180
Query: 409 LNVVELPPEI 418
             +V+L  E+
Sbjct: 181 SKLVKLEVEV 190

>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human Obscurin (Kiaa1556) Length = 103

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G   F + L DLEV E   A L   ++S  A VKW      ++   K ++ ++G   +L+
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAXLELV 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
           +RN+   D G Y+CS  DQ TSA L V  LP
Sbjct: 67  VRNLRPQDSGRYSCSFGDQTTSATLTVTALP 97

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 28/281 (9%)
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWY--KDGKLIKDRQITSEKN--THTLTLIQCST 297
           L  V ++ GES   +    GEP   ++WY  +  K+I  +++  +K      LT+   + 
Sbjct: 11  LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 69
Query: 298 KDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA- 355
           +D G Y  + T+ +G T E+   L + Q K  F + +   E K+ E+A +   V+S  A 
Sbjct: 70  EDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCRVSSSPAP 128
Query: 356 DVKWFKDGQEIKT---SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELN-- 410
            V W    +E+ T   ++   +         + ++    DEG Y C     E   E++  
Sbjct: 129 AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS----DEGIYRCE-GRVEARGEIDFR 183
Query: 411 ----VVELPPEISVPLQDVKVS--RDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTL 463
               +V +PP IS+P +    +  R E+ +F    +   +  + W+++GK I   EN   
Sbjct: 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKY 241
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTV 503
            + G   +L + +    D G Y CR  +  G+ E +A L V
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIF 475
           ++++ L  V++S  E   F          + WY   G++I  ++ V +  +G + +L I+
Sbjct: 6   QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 65
Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
           +A +EDAG Y C+  D   +  +AT+ +E
Sbjct: 66  NANIEDAGIYRCQATDAKGQTQEATVVLE 94

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 96/255 (37%), Gaps = 49/255 (19%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
            +   +  D   Y V+ TN+ G+V   A+L V+                           
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEV-------------------------- 98
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
              K   P  LE +  V    GE   + +   G+P P + W K   LI +    Q+   +
Sbjct: 99  -PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 286 NTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
           +  +L        KD G Y V   N+ G         +DQ   E    LD  +V +    
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFG---------IDQKTVE----LDVADVPDPPRG 204
Query: 345 VLEVEVTSDKADVKW 359
           V   +V+ D  ++ W
Sbjct: 205 VKVSDVSRDSVNLTW 219

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 18/211 (8%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD-QGKAEFIKKLDDL-EVKERENAVLEV 348
            +   +  D   Y V+ TN+ G+V   A+L V+   K    K L+ +  V      V+ +
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 349 EV-TSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN-ISVHDEGEYTCSLPDQ- 403
           ++  S K D  + W K    I  +    +    +   L+  N +   D G Y     ++ 
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 404 ---ETSAELNVVELP-PEISVPLQDVKVSRD 430
              + + EL+V ++P P   V + D  VSRD
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSD--VSRD 213

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           AP F E      V+ +    L+ KV   P P + W+R  K +++   K  I + +    +
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 618 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
           L  A  ++ DA  Y+V ATN+ GS +  A + V+V
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 83/218 (38%), Gaps = 36/218 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 3   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
            +   +  D   Y V+ TN+ G+V   A+L V+                           
Sbjct: 63  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEV-------------------------- 96
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
              K   P  LE +  V    GE   + +   G+P P + W K   LI +    Q+   +
Sbjct: 97  -PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 155
Query: 286 NTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNV 322
           +  +L        KD G Y V   N+ G  +    L+V
Sbjct: 156 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 193

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 3   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
            +   +  D   Y V+ TN+ G+V   A+L V+
Sbjct: 63  IIASVTDDDATVYQVRATNQGGSVSGTASLEVE 95

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           AP F E      V+ +    L+ KV   P P + W+R  K +++   K  I + +    +
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 618 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
           L  A  ++ DA  Y+V ATN+ GS +  A + V+V
Sbjct: 62  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 96

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 14  TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
           TF +   P   ++  +  +  R+ + P P + W Y+ E +        SD        + 
Sbjct: 4   TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV-----TTISDNRFAMLANNN 58
Query: 74  VTIKSIKKREEGVYTVVAK-NREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
           + I +I K +EG+Y    +    GE    DI V VN   P   S+ +   + +   GE  
Sbjct: 59  LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV--PPAISMPQKSFNATAERGEEM 116
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTLIQCSTKDKGRYSVKVTNKEG 190
             S +  G P P + W+++GKLI++ +    K ++T LT+      D G Y  + TNK G
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 176
Query: 191 TVESAANLNV 200
             E  A L V
Sbjct: 177 EDEKQAFLQV 186

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 236 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTL 292
           P+I  P    + T   GE    S +  G P P + W+++GKLI++ +    K ++T LT+
Sbjct: 97  PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 156
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                 D G Y  + TNK G  E  A L V
Sbjct: 157 RNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915) From Human Obscurin Length = 103

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G A  IK L+D  V   E+  L  E++     V W KD + I+ S+K  +  +GT+  L+
Sbjct: 7   GPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVE 413
           IR  S+ D GEYTC +   +++A L+V E
Sbjct: 67  IRGASLKDAGEYTCEVEASKSTASLHVEE 95

>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915) From Human Obscurin Length = 103

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
           P  I  PL+D  V+  E      EL++    V W KD K I  S+   +  +G    L+I
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
             A L+DAGEY+C V  +   +S A+L VE
Sbjct: 68  RGASLKDAGEYTCEVEAS---KSTASLHVE 94

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 83/218 (38%), Gaps = 36/218 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
            +   +  D   Y V+ TN+ G+V   A+L V+                           
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEV-------------------------- 98
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
              K   P  LE +  V    GE   + +   G+P P + W K   LI +    Q+   +
Sbjct: 99  -PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 286 NTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNV 322
           +  +L        KD G Y V   N+ G  +    L+V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
            +   +  D   Y V+ TN+ G+V   A+L V+
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           AP F E      V+ +    L+ KV   P P + W+R  K +++   K  I + +    +
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 618 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
           L  A  ++ DA  Y+V ATN+ GS +  A + V+V
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 23/199 (11%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--------DRQITSEKNT 287
           P I+E   D+ +++GE A L+ +  G P+P +EWYK G+ ++         R +    + 
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 288 HTLTLIQC--STKDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
             L ++    S  D+G Y     N  G  V   A+L V   + +F +   D+ V   E A
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 345 VLEVEVTSDKAD--VKWFKDGQEI-KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--- 398
           V+E +      +  + W KDG  +    +++TI       KL+I      D G+Y C   
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG----KLMITYTRKSDAGKYVCVGT 185
Query: 399 -SLPDQETS-AELNVVELP 415
             + ++E+  AEL V+E P
Sbjct: 186 NMVGERESEVAELTVLERP 204

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 127/332 (38%), Gaps = 54/332 (16%)
Query: 2   SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE---PLQETDE 58
           S  A ++   P  F  +T+ + A     V L+  ++  P P + W  N +   P+     
Sbjct: 111 SRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR 170
Query: 59  VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN----REGEAKMDIPVKVNTGKPEKP 114
           VV      +        I  ++  + GVY   A+N    R G  + ++ +  + G   + 
Sbjct: 171 VVVLPSGALQ-------ISRLQPGDSGVYRCSARNPASTRTGN-EAEVRILSDPGLHRQL 222
Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QITSEKNTHTLTLIQC 173
             L+   +V   EG+ AVL   V G P P   W +  ++I+ R +  S      L +   
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV 282
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKP 233
           +  D G Y+  VT K   + ++A L                          T+ V     
Sbjct: 283 TDDDSGTYTCVVTYKNENISASAEL--------------------------TVLVPPWFL 316
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTL 290
             PS L     + I E E A     V G+P P V W K+G ++      QI    N   L
Sbjct: 317 NHPSNLYAYESMDI-EFECA-----VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRIL 370
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            +++    D+G Y     N+ G  +S+A L V
Sbjct: 371 GVVK---SDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 119/291 (40%), Gaps = 32/291 (10%)
Query: 241 PLHDVSITE------GESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTHT 289
           PL  +S TE      G++ +L  +V G+P P + W K+ + +       R +        
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTV---ESAANLNVDQG---KAEFIKKLDDLEVKEREN 343
           ++ +Q    D G Y     N   T    E+   +  D G   +  F+++  ++   E ++
Sbjct: 181 ISRLQ--PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238
Query: 344 AVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP- 401
           AVLE  V+        W +  + I+   K      G+   LLI N++  D G YTC +  
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTY 296
Query: 402 ---DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAF 457
              +   SAEL V+ +PP       ++         FE  ++ K    V W K+G  +  
Sbjct: 297 KNENISASAELTVL-VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP 355
Query: 458 SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPA 507
           S+   + + G    L I      D G Y C    + G+ +S A L V  PA
Sbjct: 356 SDYFQI-VGGS--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403

>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding Proteinc Length = 100

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 327 AEFIKKLD-DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
           A F K LD   +V +       VE+   K +VKW+K+GQEI+ S K   E KG  R L I
Sbjct: 8   AAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFI 67
Query: 386 RNISVHDEGEYTCSLPDQETSAELNVVELP 415
            N  + D+ EY  +  D++ S EL V   P
Sbjct: 68  NNCQMTDDSEYYVTAGDEKCSTELFVRSGP 97

>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of Human Obscurin Length = 110

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G A FI+ + + E +E   AVL+ E+ S  A V+W K  + ++   + ++ + GT  +L 
Sbjct: 7   GPARFIEDVKNQEAREGATAVLQCEL-SKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVK 426
           I  +SV D GEY+C    + TSA L V  LP   +   QD+K
Sbjct: 66  IHGLSVADTGEYSCVCGQERTSATLTVRALPARFT---QDLK 104

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 115/316 (36%), Gaps = 53/316 (16%)
Query: 21  PVYAEENSEVTLEVRLV-AVPEPDLLWYYNG-EPLQETDEVVFSDQSDMHSYVSIVTIK- 77
           PV  +E + +TL+      +P P + W  +  EP+ +   V      D+  Y S V ++ 
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL--YFSNVMLQD 182
Query: 78  -----SIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEK-PSILEPLHDVS---ITEG 128
                S   R    +T+  KN        + V    G  E+ PS + P    S   +  G
Sbjct: 183 MQTDYSCNARFHFTHTIQQKN-----PFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG 237
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
              +L     G P+P + WYK G  +   +   E     L +   S +D G Y    +NK
Sbjct: 238 MDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297
Query: 189 EGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSIT 248
            G++    ++ V                                   P  L+   ++ + 
Sbjct: 298 MGSIRHTISVRVKAA--------------------------------PYWLDEPKNLILA 325
Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR--YSVK 306
            GE   L  +  G P P V+W  +G+ ++       +     T+I   T+   R  Y   
Sbjct: 326 PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCN 385
Query: 307 VTNKEGTVESAANLNV 322
            +N+ G + + A ++V
Sbjct: 386 TSNEHGYLLANAFVSV 401

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/404 (20%), Positives = 151/404 (37%), Gaps = 50/404 (12%)
Query: 12  PPTFSKKT-KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           PPT +K++ K    +    + +E      P P   W  N        +   S +    S 
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR--RSG 73
Query: 71  VSIVTIKSIKKREE--GVYTVVAKNREGEAKMDIPVKVNTGK-PEKPSILEPLHDVSITE 127
             ++  +S  + EE  G Y   A+N+ G A +   +++   K P  P   E L  V + E
Sbjct: 74  TLVIDFRSGGRPEEYEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPK--ENLDPVVVQE 130
Query: 128 GESAVLSVQVG---GEPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
           G  A L++Q     G PSP + W       + +D++++   N                Y 
Sbjct: 131 G--APLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL-------------YF 175
Query: 183 VKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT--GKPEK-PSIL 239
             V  ++   + + N                           TL+V T  G  E+ PS +
Sbjct: 176 SNVMLQDMQTDYSCNARFHFTHTIQQKNPF------------TLKVLTTRGVAERTPSFM 223
Query: 240 EPLHDVS---ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 296
            P    S   +  G   +L     G P+P + WYK G  +   +   E     L +   S
Sbjct: 224 YPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVS 283
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 355
            +D G Y    +NK G++    ++ V +    ++ +  +L +   E+  L      + K 
Sbjct: 284 EEDSGEYFCLASNKMGSIRHTISVRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP 342
Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
            V+W  +G+ ++++      ++     ++ R+  +     Y C+
Sbjct: 343 TVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAVYQCN 385

>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From Human Cdna Length = 113

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 342 ENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
           E  VL  E+    A+V+W KDG+E+  S  + ++K+ T+R+L++  + + D GEY C + 
Sbjct: 29  ERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEID 88
Query: 402 DQETSAELNVVELPPEI 418
           D+  S  + V E P  I
Sbjct: 89  DESASFTVTVTEPPVRI 105

>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From Human Cdna Length = 113

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 425 VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGE 484
           V   R E+     EL +  A V+W KDG+E+  S  + L  +   ++L++ +  LED+GE
Sbjct: 23  VAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGE 82
Query: 485 YSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
           Y C +    D+ +  T+TV  P V  +   PS
Sbjct: 83  YLCEI---DDESASFTVTVTEPPVRIIYSGPS 111

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 65  SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI-----LEP 119
           S+M  ++S +TI  + + ++G+YT  A +     K    V+V+    EKP +     +E 
Sbjct: 153 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMES 208
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 179
           L  V  T GE   +  +  G P P+++WYK+G  ++       K  H LT+++ S +D G
Sbjct: 209 L--VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEVSERDTG 264
Query: 180 RYSVKVTN 187
            Y+V +TN
Sbjct: 265 NYTVILTN 272

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 304
           V  T GE   +  +  G P P+++WYK+G  ++       K  H LT+++ S +D G Y+
Sbjct: 210 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEVSERDTGNYT 267
Query: 305 VKVTN-----KEGTVESAANLNVDQ-GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVK 358
           V +TN     K+  V S       Q G+   I  +D  +    +     V        + 
Sbjct: 268 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 327
Query: 359 WF 360
           W+
Sbjct: 328 WY 329

>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of Human Obscurin Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G A FI+ + + E +E   AVL+ E+ S  A V+W K  + ++   + ++ + GT  +L 
Sbjct: 7   GPARFIEDVKNQEAREGATAVLQCELNS-AAPVEWRKGSETLRDGDRYSLRQDGTKCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
           IR +++ D GEY+C    + TSA L V  LP
Sbjct: 66  IRGLAMADTGEYSCVCGQERTSAMLTVRALP 96

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/473 (20%), Positives = 177/473 (37%), Gaps = 74/473 (15%)
Query: 45  LWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV 104
           LW+ N + L  +  +  S+ +        +T+ ++ + +   Y    +N     + D  +
Sbjct: 143 LWWVNNQSLPVSPRLQLSNGNRT------LTLFNVTRNDTASYKCETQNPVSARRSDSVI 196
Query: 105 KVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN 164
                 P+ P+I  PL + S   GE+  LS      P  +  W+ +G        T +++
Sbjct: 197 LNVLYGPDAPTI-SPL-NTSYRSGENLNLSCHAASNPPAQYSWFVNG--------TFQQS 246
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLD 224
           T  L +   +  + G Y+ +  N +  +                              + 
Sbjct: 247 TQELFIPNITVNNSGSYTCQAHNSDTGLNRTT--------------------------VT 280
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAV-LSVQVGGEPSPKVEWYKDGKLIKDRQITS 283
           T+ V   +P KP I    ++ +  E E AV L+ +   + +  + W  +  L    ++  
Sbjct: 281 TITV-YAEPPKPFITS--NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQL 337
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERE 342
             +  TLTL+  +  D G Y   + N+     S    LNV  G  +          +   
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397
Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
           N  L     S+  A   W  DG          I++    ++L I NI+  + G YTC   
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGN---------IQQH--TQELFISNITEKNSGLYTCQAN 446
Query: 402 DQETSAELNVV-------ELP-PEISVPLQDVKVSRDEKA-SFEIELTKGDALVKWYKDG 452
           +  +      V       ELP P IS    + K   D+ A +F  E    +    W+ +G
Sbjct: 447 NSASGHSRTTVKTITVSAELPKPSISS--NNSKPVEDKDAVAFTCEPEAQNTTYLWWVNG 504
Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD--TGDKESKATLTV 503
           + +  S  + LS +G +  L +F+    DA  Y C + +  + ++    TL V
Sbjct: 505 QSLPVSPRLQLS-NGNR-TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 37/286 (12%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 292
           P+ P+I  PL + S   GE+  LS      P  +  W+ +G        T +++T  L +
Sbjct: 203 PDAPTI-SPL-NTSYRSGENLNLSCHAASNPPAQYSWFVNG--------TFQQSTQELFI 252
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVD---QGKAEFIKKLDDLEVKERENAVLEVE 349
              +  + G Y+ +  N +  +       +    +    FI   +   V++ +   L  E
Sbjct: 253 PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCE 312
Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP-----DQE 404
                    W+ + Q +  S ++ +      R L + +++ +D G Y C +      D  
Sbjct: 313 PEIQNTTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHS 370
Query: 405 TSAELNVVELP--PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVT 462
               LNV+  P  P IS      +   +   S     +   A   W  DG          
Sbjct: 371 DPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGN--------- 420
Query: 463 LSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKA---TLTVEA 505
             I    Q+L I +   +++G Y+C+  ++    S+    T+TV A
Sbjct: 421 --IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA 464

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 21/195 (10%)
Query: 17  KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTI 76
           +K+    AE   E+T   R    PEP + W+ NG+ ++E ++ +    +      + +T+
Sbjct: 9   QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN------TELTV 62
Query: 77  KSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQ 136
           ++I   + G Y   A N+ GE +    ++V      +P I++  ++ +   G+   L   
Sbjct: 63  RNIINSDGGPYVCRATNKAGEDEKQAFLQVFV----QPHIIQLKNETTYENGQ-VTLVCD 117
Query: 137 VGGEPSPKVEWYK--DG-------KLIKDR-QITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
             GEP P++ W +  DG       K +  R ++  +  + +L +      D GRY  +  
Sbjct: 118 AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA 177
Query: 187 NKEGTVESAANLNVD 201
           ++ G  + +  L+++
Sbjct: 178 SRIGGHQKSMYLDIE 192

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 46/223 (20%)
Query: 114 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTL 170
           P+I  P    + T   GE    S +  G P P + W+++GKLI++ +    K ++T LT+
Sbjct: 3   PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT 230
                 D G Y  + TNK G  E  A L V                              
Sbjct: 63  RNIINSDGGPYVCRATNKAGEDEKQAFLQVFV---------------------------- 94
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK--DG-------KLIKDR-Q 280
               +P I++  ++ +   G+   L     GEP P++ W +  DG       K +  R +
Sbjct: 95  ----QPHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIE 149
Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           +  +  + +L +      D GRY  +  ++ G  + +  L+++
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 236 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTL 292
           P+I  P    + T   GE    S +  G P P + W+++GKLI++ +    K ++T LT+
Sbjct: 3   PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIK----KLDDLEVKERENAVLEV 348
                 D G Y  + TNK G  E  A L V      F++    +L +    E     L  
Sbjct: 63  RNIINSDGGPYVCRATNKAGEDEKQAFLQV------FVQPHIIQLKNETTYENGQVTLVC 116
Query: 349 --------EVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
                   E+T  +A D   F +G +     ++ ++ +     L I+++ + D G Y C
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDK-SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 38/225 (16%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNT 165
           G   KP  ++   D +   G  A    Q  GEP P++ W K GK +  ++   I  +   
Sbjct: 3   GSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 62
Query: 166 HTLTLIQC--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXL 223
            ++  IQ     +D+  Y    TN  G + ++A L+V                      L
Sbjct: 63  GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV----------------------L 100
Query: 224 DTLQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
           +  Q+ +G    P+I + P   V + +G +A +    GG P P++ W+KD  L  D   +
Sbjct: 101 EEDQLPSG---FPTIDMGPQLKV-VEKGRTATMLCAAGGNPDPEISWFKD-FLPVDPAAS 155
Query: 283 SEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
           + +     +  L +      D+G+Y    TN  GT  SA ANL V
Sbjct: 156 NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 200

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNT 287
           G   KP  ++   D +   G  A    Q  GEP P++ W K GK +  ++   I  +   
Sbjct: 3   GSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 62
Query: 288 HTLTLIQC--STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEV-- 338
            ++  IQ     +D+  Y    TN  G + ++A L+V   DQ  + F  I     L+V  
Sbjct: 63  GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVE 122
Query: 339 KERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
           K R   +L     +   ++ WFKD   +  +      K+     L I +    D+G+Y C
Sbjct: 123 KGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYEC 182

>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein Length = 102

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 325 GKAEFIKKLD---DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIR 381
           GK  F K+     +++ +   +A L  EV   + +V W+KDG+++ +S KV +E  G  R
Sbjct: 7   GKVVFAKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66
Query: 382 KLLIRNISVHDEGEYTCSLPDQETSAELNV 411
           +L+++     + GEY+C    Q+ S  L V
Sbjct: 67  RLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96

>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein Length = 102

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDA 482
           ++V+      A+   E+ +    V WYKDGK+++ S  V +   G  ++L++  AG  +A
Sbjct: 19  REVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEA 78
Query: 483 GEYSCRVG 490
           GEYSC  G
Sbjct: 79  GEYSCEAG 86

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQ 294
           IL     +++ EGESA  S    GEP P V W + G+++      Q+T+ K   T  +  
Sbjct: 11  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
               D+G YSV V N EG  E+   L + +
Sbjct: 71  VQASDEGNYSVVVENSEGKQEAEFTLTIQK 100

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQ 294
           IL     +++ EGESA  S    GEP P V W + G+++      Q+T+ K   T  +  
Sbjct: 17  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
               D+G YSV V N EG  E+   L + +
Sbjct: 77  VQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 38/221 (17%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLT 169
           KP  ++   D +   G  A    Q  GEP P++ W K GK +  ++   I  +    ++ 
Sbjct: 6   KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 170 LIQC--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQ 227
            IQ     +D+  Y    TN  G + ++A L+V                         L+
Sbjct: 66  RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV-------------------------LE 100
Query: 228 VNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK- 285
                P  PSI + P   V + +  +A +    GG P P++ W+KD  L  D   ++ + 
Sbjct: 101 EEQLPPGFPSIDMGPQLKV-VEKARTATMLCAAGGNPDPEISWFKD-FLPVDPATSNGRI 158
Query: 286 ---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
               +  L +      D+G+Y    TN  GT  SA ANL V
Sbjct: 159 KQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 199

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGENII 615
           P+FI+  E++T    G    + +    P P I W +  K +  S ++ E+    DG   +
Sbjct: 7   PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV--SSQRFEVIEFDDGAGSV 64
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDI 664
           L ++    + D   Y+  ATN LG     A+++V  E+   P   SID+
Sbjct: 65  LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDM 113

>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From Human Obscurin-Like Protein 1 Length = 104

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 431 EKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
           E+     EL++ D    WYKDG+++  SE + + +DG+K +LI+  A ++D+GE+ CR
Sbjct: 26  ERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECR 83

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 168
            KP I+  L D +++    A  +V+  GEP P   W KDGK I      +++ +K    L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            + +  T D G Y+  V N  G+V S+  L +
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 290
            KP I+  L D +++    A  +V+  GEP P   W KDGK I      +++ +K    L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            + +  T D G Y+  V N  G+V S+  L +
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human Kiaa1556 Protein Length = 108

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G A F + L   E  E   A L+ E+ S  A V+W K  + ++   + ++++ GT  +L 
Sbjct: 7   GPARFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
           I ++SV D GEY+C    + TSA L V  LP   +
Sbjct: 66  IHDLSVADAGEYSCMCGQERTSATLTVRALPARFT 100

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 7   ILEGIPPTFSKKTKPVYAEEN--SEVTLEVRLVAVPEPDLLWYYNGEPLQETDE----VV 60
           ++  +PPT   +   V A  N    VTL       PEP + W  +GEP++  +E     +
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI 248
Query: 61  FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
           FSD S      S +TI+++ K +E  Y  +A+N+ GE    I +KV
Sbjct: 249 FSDDS------SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 110/295 (37%), Gaps = 55/295 (18%)
Query: 43  DLLWYY-NGE---PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG-- 96
           D+ W+  NGE   P Q+   VV++D        S +TI +    + G+Y  V    +G  
Sbjct: 34  DISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNANIDDAGIYKCVVTAEDGTQ 88
Query: 97  -EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK--- 152
            EA +++ +         P+  E        EGE AV+   V     P + W   G+   
Sbjct: 89  SEATVNVKIFQKLMFKNAPTPQE------FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
Query: 153 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXX 212
           L KD +     N + L +      D+G Y       EG + +   +N             
Sbjct: 143 LKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC-----EGRILARGEIN------------- 183
Query: 213 XXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD 272
                        +QV    P      + + + +   G+S  L     G P P + W KD
Sbjct: 184 ----------FKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD 233
Query: 273 GKLIKDRQITSEKNTHT-----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           G+ I++ +   EK+  +     LT+      D+  Y     NK G  +++ +L V
Sbjct: 234 GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of Human Obscurin Length = 102

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G A FI +L   E  E   A L  E+ S  A V+W K  + ++   + ++ + G + +L 
Sbjct: 7   GPAHFIGRLRHQESIEGATATLRCEL-SKAAPVEWRKGRESLRDGDRHSLRQDGAVCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
           I  ++V D GEY+C   ++ TSA L V  LP
Sbjct: 66  ICGLAVADAGEYSCVCGEERTSATLTVKALP 96

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHS 69
           PP F +  + +  +E     ++ ++  +P PD+ WY NG  +Q  D  +++ S++  +HS
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG-LHS 63
Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
            +     + ++  + G Y  VAKNR GEA   + + V
Sbjct: 64  LI----FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLT 169
           P  ++   ++SI EG    +  +V G P+P V WY +G+ ++     + I SEK  H+L 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                  D G Y+    N+ G       L+V
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLT 291
           P  ++   ++SI EG    +  +V G P+P V WY +G+ ++     + I SEK  H+L 
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                  D G Y+    N+ G       L+V
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P FI+  E  ++ E    R+  KV   PAP + W+ N + + S    + I   + +   +
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
            E    +DAG Y  VA N  G AT   ++ V
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin Binding Protein C Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 329 FIKKLD-DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLIR 386
           F KKL+   +V +     L VE+    A+VKW K+GQEI+ S  K   E  G  R L I 
Sbjct: 18  FQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTIS 77
Query: 387 NISVHDEGEYTCSLPDQETSAELNVVE 413
             S+ D+  Y C +  ++ S EL V E
Sbjct: 78  QCSLADDAAYQCVVGGEKCSTELFVKE 104

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 15/178 (8%)
Query: 23  YAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR 82
           YA     VTLE      P P + W       ++ D    S  S   S   ++ I+++   
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKW-------RKLDG---SQTSKWLSSEPLLHIQNVDFE 267
Query: 83  EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS 142
           +EG Y   A+N +G       + ++     +P  L+ + D     G     S    G+P 
Sbjct: 268 DEGTYECEAENIKGRDTYQGRIIIHA----QPDWLDVITDTEADIGSDLRWSCVASGKPR 323
Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           P V W +DG+ +   Q   E +   L   +   +D G Y     NK GTV ++A L V
Sbjct: 324 PAVRWLRDGQPLAS-QNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 69/201 (34%), Gaps = 36/201 (17%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
           D     G+   L     G P P+++W K       + ++SE   H   +     +D+G Y
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV---DFEDEGTY 272
Query: 182 SVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEP 241
             +  N +G                                 DT Q       +P  L+ 
Sbjct: 273 ECEAENIKGR--------------------------------DTYQGRIIIHAQPDWLDV 300
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 301
           + D     G     S    G+P P V W +DG+ +   Q   E +   L   +   +D G
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS-QNRIEVSGGELRFSKLVLEDSG 359
Query: 302 RYSVKVTNKEGTVESAANLNV 322
            Y     NK GTV ++A L V
Sbjct: 360 MYQCVAENKHGTVYASAELTV 380

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENI 614
           +AP+FI + + K V E  +++L  ++ A P P + W RNN+ +  +  +  ++  +   +
Sbjct: 14  RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            L +K+ + + DAG Y V A NE G  T   R+ V
Sbjct: 74  TLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDV 107

>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of Human Obscurin Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
           +FI+ L + E  E + A L  E+ S  A V+W K  + ++   + ++ + G+  +L IR 
Sbjct: 10  KFIEGLRNEEATEGDTATLWCEL-SKAAPVEWRKGHETLRDGDRHSLRQDGSRCELQIRG 68
Query: 388 ISVHDEGEYTCSLPDQETSAELNVVELP 415
           ++V D GEY+C    + TSA L V  LP
Sbjct: 69  LAVVDAGEYSCVCGQERTSATLTVRALP 96

>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of Human Obscurin Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 422 LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLED 481
           L++ + +  + A+   EL+K  A V+W K  + +   +  +L  DG + +L I    + D
Sbjct: 15  LRNEEATEGDTATLWCELSKA-APVEWRKGHETLRDGDRHSLRQDGSRCELQIRGLAVVD 73
Query: 482 AGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
           AGEYSC     G + + ATLTV A    F+   PS
Sbjct: 74  AGEYSCVC---GQERTSATLTVRALPARFIESGPS 105

>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin- Dinding Protein C, Slow-Type Length = 103

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 331 KKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEI----KTSKKVTIEKKGTIRKLLIR 386
           K+L+D      E   LE EV+ D A+VKWFK+G+EI    K+  ++ +E K  I  L+I 
Sbjct: 12  KQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI--LIIE 69
Query: 387 NISVHDEGEYTCSLPDQETSAELNV 411
             +  D  EY+      ++SA+L+V
Sbjct: 70  GATKADAAEYSVMTTGGQSSAKLSV 94

>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin- Dinding Protein C, Slow-Type Length = 103

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 422 LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI--AFSENVTLSIDGKKQKLIIFSAGL 479
           L+D      E+   E E+++ DA VKW+K+G+EI         + ++GKK  LII  A  
Sbjct: 14  LEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73
Query: 480 EDAGEYSCRVGDTGDKESKATLTVE 504
            DA EYS  V  TG  +S A L+V+
Sbjct: 74  ADAAEYS--VMTTGG-QSSAKLSVD 95

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 38/299 (12%)
Query: 41  EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM 100
           E  ++WY      ++  E+   ++ D    +  + I    K++ G+Y V+ K+  G+ K 
Sbjct: 36  ETHIVWY------KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 89
Query: 101 DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP---------KVEWYKDG 151
            + +     +  K  ++E    ++++  +  + S   G +            KV W  +G
Sbjct: 90  RLKL---VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG 146
Query: 152 KLIK--DRQITSEKNTHTLTLIQCST-KDKGRYSVKVTNKEGTVESAANLNVDXXXXXXX 208
             I+  DR  T          I   T  DKG+Y +++ + +   +   +L+         
Sbjct: 147 SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYA 206
Query: 209 XXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDV-SITEGESAVLSVQVGGEPSPKV 267
                             Q    +  +  +L  L DV +I EG++  L+  V G+P P+V
Sbjct: 207 EFQRLK------------QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEV 254
Query: 268 EWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            W K+ K +      + K     T   T+   ST D G+Y + V NK G+  S   ++V
Sbjct: 255 SWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 126/342 (36%), Gaps = 57/342 (16%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
            F++ L   EV    N +L+ +V + K +  + W+KD +EI   +K     K  I  LLI
Sbjct: 9   HFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLI 65
Query: 386 RNISVHDEGEYTCSLPDQ------------ETSAELNVVELPPEISVPLQDVKVSRDEKA 433
              S  D G Y   L D             E   EL ++E+  +I++   D+K+    + 
Sbjct: 66  TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKEL-MMEVCKKIALSATDLKIQSTAEG 124
Query: 434 ----SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
               SF +     D  V W  +G  I +S+ V   + G++  L I      D G+Y   +
Sbjct: 125 IQLYSF-VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 490 --GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIV 547
             G TG +++                                V+LS       +     +
Sbjct: 184 FDGKTGHQKT--------------------------------VDLSGQAYDEAYAEFQRL 211
Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 607
               +    +A +     +  T++E   + L   V   P P + W +N K L S      
Sbjct: 212 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL 271
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            F+            S  D+G Y +V  N+ GS T    V+V
Sbjct: 272 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of Obscurin-Like Protein 1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr8578k Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 342 ENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
           E  +L  EV  + A V+W+KDGQE++ S  V +E +G  R+L++      D GE+ C   
Sbjct: 22  ECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG 81
Query: 402 DQ 403
           D+
Sbjct: 82  DE 83

>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of Obscurin-Like Protein 1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr8578k Length = 91

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 414 LPPEISVPLQDVKVS--RDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
           +P  I  P + V V     E      E+ + DA V+WYKDG+E+  S+ V L  +G  ++
Sbjct: 3   MPVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRR 62
Query: 472 LIIFSAGLEDAGEYSCRVGD 491
           L++ +    D GE+ C  GD
Sbjct: 63  LVLPATQPSDGGEFQCVAGD 82

>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From Human Obscurin Length = 113

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIE 375
           ++A L V     +F + L + E  E   AVL  E+ S  A V+W+K  + ++   + ++ 
Sbjct: 9   TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLRDGDRHSLR 67
Query: 376 KKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELP 415
           + G   +L IR +   D GEY C    + TSA L V  +P
Sbjct: 68  QDGARCELQIRGLVAEDAGEYLCMCGKERTSAMLTVRAMP 107

>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From Human Obscurin Length = 113

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLS 464
           TSA L V  LP + +  L++ + +    A    EL+K  A V+W+K  + +   +  +L 
Sbjct: 9   TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM-APVEWWKGHETLRDGDRHSLR 67
Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
            DG + +L I     EDAGEY C     G + + A LTV A
Sbjct: 68  QDGARCELQIRGLVAEDAGEYLCMC---GKERTSAMLTVRA 105

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHS 69
           PP F++             +   +    P P ++W   G+ +  Q  + + F D S    
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG--- 62
Query: 70  YVSIVTIKSIKK-REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS---- 124
             S++ I+ ++  R+E +Y  VA N  GE  + +  ++   + ++     P  D+     
Sbjct: 63  --SVLRIQPLRTPRDEAIYECVASNNVGE--ISVSTRLTVLREDQIPRGFPTIDMGPQLK 118
Query: 125 -ITEGESAVLSVQVGGEPSPKVEWYKD----------GKLIKDRQITSEKNTHTLTLIQC 173
            +    +A +     G P P++ W+KD          G++   +Q+ SE +   L + Q 
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI---KQLRSE-SIGALQIEQS 174
Query: 174 STKDKGRYSVKVTNKEGTVESA-ANLNV 200
              D+G+Y    TN  GT  SA ANL V
Sbjct: 175 EESDQGKYECVATNSAGTRYSAPANLYV 202

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 46/220 (20%)
Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQC-- 173
           P+    ++ G ++ +  Q  G+P PK+ W K GK + +++   I  +  + ++  IQ   
Sbjct: 13  PVDQTGVSGGVASFI-CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKP 233
           + +D+  Y    +N  G +  +  L V                      L   Q+  G P
Sbjct: 72  TPRDEAIYECVASNNVGEISVSTRLTV----------------------LREDQIPRGFP 109
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD----------GKLIKDRQITS 283
                + P   V +    +A +     G P P++ W+KD          G++   +Q+ S
Sbjct: 110 TID--MGPQLKV-VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI---KQLRS 163
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
           E +   L + Q    D+G+Y    TN  GT  SA ANL V
Sbjct: 164 E-SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQC-- 295
           P+    ++ G ++ +  Q  G+P PK+ W K GK + +++   I  +  + ++  IQ   
Sbjct: 13  PVDQTGVSGGVASFI-CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEVKERENAVLEVEV 350
           + +D+  Y    +N  G +  +  L V   DQ    F  I     L+V ER      +  
Sbjct: 72  TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA 131
Query: 351 TSDKAD--VKWFKDGQEIKTSK---KVTIEKKGTIRKLLIRNISVHDEGEYTC 398
            S   D  + WFKD   + TS    ++   +  +I  L I      D+G+Y C
Sbjct: 132 ASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTHTL 168
           +P  L+   D+++ EG+   +  +V G P+P + W  DGK ++     + +  E   H+L
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 169 TLIQCSTKDKGRYSVKVTNKEG 190
            +   +++D G Y+   TN+ G
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAG 90

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTHTL 290
           +P  L+   D+++ EG+   +  +V G P+P + W  DGK ++     + +  E   H+L
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 291 TLIQCSTKDKGRYSVKVTNKEG 312
            +   +++D G Y+   TN+ G
Sbjct: 69  IIEPVTSRDAGIYTCIATNRAG 90

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
           GS G  P F++   + TV+E    R+  KV   P P + W  + KP+      + +    
Sbjct: 4   GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 655
            +   + E  +  DAG Y  +ATN  G  +    + V  ++ G
Sbjct: 64  GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 36/195 (18%)
Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
           G+   L     G P P+++W K    +  +  T+E    TL +   S +D+G Y  +  N
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEP---TLQIPSVSFEDEGTYECEAEN 277
Query: 188 KEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSI 247
            +G                                 DT+Q       +P  L+ + D   
Sbjct: 278 SKGR--------------------------------DTVQGRIIVQAQPEWLKVISDTEA 305
Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
             G +        G+P P V W ++G+ +   Q   E     L   + S +D G Y    
Sbjct: 306 DIGSNLRWGCAAAGKPRPTVRWLRNGEPLAS-QNRVEVLAGDLRFSKLSLEDSGMYQCVA 364
Query: 308 TNKEGTVESAANLNV 322
            NK GT+ ++A L V
Sbjct: 365 ENKHGTIYASAELAV 379

>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human Kiaa1556 Protein Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 327 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
           A F + L + E  E   A L+ E+ S  A V+W K  + ++   K ++ + G + +L I 
Sbjct: 8   ARFTEGLRNEEAMEGATATLQCEL-SKAAPVEWRKGLEALRDGDKYSLRQDGAVCELQIH 66
Query: 387 NISVHDEGEYTCSLPDQETSAELNVVELP 415
            +++ D G Y+C    + TSA L V  LP
Sbjct: 67  GLAMADNGVYSCVCGQERTSATLTVRALP 95

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 168
           KP   + + D+ + EG +A    +V G P P+V W+KD   +K+    QI   E+   +L
Sbjct: 41  KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
           T+ +    D  +Y+ K  N  G     A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 290
           KP   + + D+ + EG +A    +V G P P+V W+KD   +K+    QI   E+   +L
Sbjct: 41  KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           T+ +    D  +Y+ K  N  G     A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-N 613
           P   P F +   +  V E    R   KV+  P P ++WF+++ P+  S   +  +D E N
Sbjct: 38  PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
             L + E   + DA  Y   A N LG AT  A + V+
Sbjct: 98  CSLTISEVCGDDDA-KYTCKAVNSLGEATCTAELLVE 133

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
            GG P P + W K+GK  K + +I   K  N H +L +      DKG Y+  V N+ G++
Sbjct: 34  AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 93
Query: 315 ESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVEVTSD 353
               +L+V +                     G  EF+ K+   + +     +  VE    
Sbjct: 94  NHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGS 152
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAEL 409
           K         + +K +   T +K+  I  L IRN++  D GEYTC    S+     SA L
Sbjct: 153 KYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 210
Query: 410 NVVELP 415
            V+  P
Sbjct: 211 TVLPAP 216

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
            GG P P + W K+GK  K + +I   K  N H +L +      DKG Y+  V N+ G++
Sbjct: 35  AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 94
Query: 315 ESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVEVTSD 353
               +L+V +                     G  EF+ K+   + +     +  VE    
Sbjct: 95  NHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGS 153
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAEL 409
           K         + +K +   T +K+  I  L IRN++  D GEYTC    S+     SA L
Sbjct: 154 KYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 211
Query: 410 NVVELP 415
            V+  P
Sbjct: 212 TVLPAP 217

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 32/190 (16%)
Query: 255 LSVQVGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNK 310
                GG P P + W K+GK  K + +I   K  N H +L +      DKG Y+  V N+
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 311 EGTVESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVE 349
            G++    +L+V +                     G  EF+ K+   + +     +  VE
Sbjct: 91  YGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVE 149
Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQET 405
               K         + +K +   T +K+  I  L IRN++  D GEYTC    S+     
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFH 207
Query: 406 SAELNVVELP 415
           SA L V+  P
Sbjct: 208 SAWLTVLPAP 217

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 168
           KP   + + D+ + EG +A    +V G P P+V W+KD   +K+    QI   E+   +L
Sbjct: 41  KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
           T+ +    D  +Y+ K  N  G     A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 290
           KP   + + D+ + EG +A    +V G P P+V W+KD   +K+    QI   E+   +L
Sbjct: 41  KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           T+ +    D  +Y+ K  N  G     A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-N 613
           P   P F +   +  V E    R   KV+  P P ++WF+++ P+  S   +  +D E N
Sbjct: 38  PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
             L + E   + DA  Y   A N LG AT  A + V+
Sbjct: 98  CSLTISEVCGDDDA-KYTCKAVNSLGEATCTAELLVE 133

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 166
           ++G    PS    L D ++ EG+  VL   V G P P++ W  +G+ I+  + T E    
Sbjct: 5   SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA 64
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            L +     +D G Y+    N  G V  +A + V
Sbjct: 65  ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
           ++G    PS    L D ++ EG+  VL   V G P P++ W  +G+ I+  + T E    
Sbjct: 5   SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA 64
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            L +     +D G Y+    N  G V  +A + V
Sbjct: 65  ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 64/176 (36%), Gaps = 13/176 (7%)
Query: 25  EENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE 84
           E  S  +L     + P P   WY   E       VV +D+    S    + IK     + 
Sbjct: 228 ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVS--GTLIIKDAVVEDS 285
Query: 85  GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK 144
           G Y  V  N  G   ++  + V    P    I  P   V    G  AV + Q  G P   
Sbjct: 286 GKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPAVFTCQYTGNPIKT 341
Query: 145 VEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           V W KDGK I   +         L +     +DKG Y   V N   + E++A L +
Sbjct: 342 VSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
           +  H LT     +  KGR  + +T   G+V    N    Q K +FI    D+E+     +
Sbjct: 185 RTKHRLTGETRLSATKGR--LVITEPVGSVRPKVN---PQDKHQFI----DVELAS-SYS 234
Query: 345 VLEVEVTSDKADVKWFK--DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC---- 398
           +L +  +      +W+K  +G   K +  +    K     L+I++  V D G+Y C    
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 294
Query: 399 SLPDQETSAELNVVE-LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEI 455
           S+  +     L V   L  +I  P Q V   R   A F  + T G+ +  V W KDGK I
Sbjct: 295 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGR--PAVFTCQYT-GNPIKTVSWMKDGKAI 351
Query: 456 AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKES 497
             SE+V L I+  K+         ED G Y C V +  D+ES
Sbjct: 352 GHSESV-LRIESVKK---------EDKGMYQCFVRN--DRES 381

>pdb|2RQ8|A Chain A, Solution Nmr Structure Of Titin I27 Domain Mutant Length = 98

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           E+  PL  V+V   E A FEIEL++ D   +W   G+ +A S +  +  DGKK  LI+ +
Sbjct: 4   EVEKPLPGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHN 63
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
             L   GE S +  +T   +S A L V
Sbjct: 64  CQLGMTGEVSFQAANT---KSAANLKV 87

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 7   ILEGIPPTFSKKTKPVYAEEN--SEVTLEVRLVAVPEPDLLWYYNGEPL-QETDEVVFSD 63
           ++  +PP+   +   + A  N    VTL       PEP + W  +GEP+ QE +E  +S 
Sbjct: 6   VIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSF 65
Query: 64  QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             D    +    IK + K +E  Y  +A+N+ GE    I +KV
Sbjct: 66  NYDGSELI----IKKVDKSDEAEYICIAENKAGEQDATIHLKV 104

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 68/189 (35%), Gaps = 13/189 (6%)
Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P T +   KP+       ++L       P P   WY   E       VV +D+    S  
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS-- 269
Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
             + IK     + G Y  V  N  G   ++  + V    P    I  P   V    G  A
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPA 325
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
           V + Q  G P   V W KDGK I   +         L +     +DKG Y   V N   +
Sbjct: 326 VFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRES 378
Query: 192 VESAANLNV 200
            E++A L +
Sbjct: 379 AEASAELKL 387

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 38/189 (20%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
            GG P P + W K+GK  K + +I   K  N H +L +      DKG Y+  V N+ G++
Sbjct: 35  AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 94
Query: 315 ESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV--------EVTSD-KADVKWFK---- 361
               +L+V     E  +    L+     NA   V        +V SD +  ++W K    
Sbjct: 95  NHTYHLDV----VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 150
Query: 362 -------DG----QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETS 406
                  DG    + +K +   T +K+  I  L IRN++  D GEYTC    S+     S
Sbjct: 151 NGSKYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHS 208
Query: 407 AELNVVELP 415
           A L V+  P
Sbjct: 209 AWLTVLPAP 217

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 261 GEPSPKVEWYKDGKLIK-DRQITSEKNTH-TLTLIQCST--KDKGRYSVKVTNKEGTVES 316
           G P+P + W K+GK  K D +I   K  + T ++I  S    DKG Y+  V N+ G++  
Sbjct: 42  GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 317 AANLNV-DQGKAEFIKKLD---DLEVKERENAVLEVEVTSD-KADVKWFK----DGQEI- 366
              L+V ++     I +     +  V    N     +V SD +  ++W K    +G +I 
Sbjct: 102 TYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG 161
Query: 367 ----------KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
                     KT+   T +K+  +  L +RN+S  D GEYTC    S+     SA L V+
Sbjct: 162 PDNLPYVQILKTAGVNTTDKE--MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Query: 413 E 413
           E
Sbjct: 220 E 220

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 247 ITEGESAVLSVQVGGEPSPK-VEWYKDG--KLIKDRQ----ITSEKNTHTLTLIQCSTKD 299
           I+ GES     QV G+   K + W+     KL  ++Q    + ++ ++ TLT+   +  D
Sbjct: 14  ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 300 KGRYSVKVTNKEGT-VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADV 357
            G Y   VT ++GT  E+  N+ + Q K  F       E KE E+AV+  +V S     +
Sbjct: 74  AGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 358 KWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
            W   G+++   K V          L IR I   DEG Y C
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRC 172

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 68/189 (35%), Gaps = 13/189 (6%)
Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P T +   KP+       ++L       P P   WY   E       VV +D+    S  
Sbjct: 218 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS-- 275
Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
             + IK     + G Y  V  N  G   ++  + V    P    I  P   V    G  A
Sbjct: 276 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPA 331
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
           V + Q  G P   V W KDGK I   +         L +     +DKG Y   V N   +
Sbjct: 332 VFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRES 384
Query: 192 VESAANLNV 200
            E++A L +
Sbjct: 385 AEASAELKL 393

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
            GG P P + W K+GK  K + +I   K  N H +L +      DKG Y+  V N+ G++
Sbjct: 33  AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 92
Query: 315 ESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVEVTSD 353
               +L+V +                     G  EF+ K+   + +     +  VE    
Sbjct: 93  NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGS 151
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAEL 409
           K         + +K +   T +K+  I  L IRN++  D GEYTC    S+     SA L
Sbjct: 152 KYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 209
Query: 410 NVVELP 415
            V+  P
Sbjct: 210 TVLPAP 215

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKN 164
           G    P+    L D S+ EG+  ++S++V GEP P V W ++ + ++  Q      +E  
Sbjct: 1   GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              L ++     D G Y+ K  N+ G  +  A L V
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKN 286
           G    P+    L D S+ EG+  ++S++V GEP P V W ++ + ++  Q      +E  
Sbjct: 1   GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              L ++     D G Y+ K  N+ G  +  A L V
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>pdb|1WAA|A Chain A, Ig27 Protein Domain Length = 93

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           E+  PL  V+V   E A FEIEL++ D   +W   G+ +A S +  +  DGKK  LI+ +
Sbjct: 7   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHN 66
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
             L   GE S +  +T   +S A L V
Sbjct: 67  CQLGMTGEVSFQAANT---KSAANLKV 90

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 261 GEPSPKVEWYKDGKLIK-DRQITSEKNTH-TLTLIQCST--KDKGRYSVKVTNKEGTVES 316
           G P P + W K+GK  K D +I   K  + T ++I  S    DKG Y+  V N+ G++  
Sbjct: 43  GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 102
Query: 317 AANLNV-DQGKAEFIKKLD---DLEVKERENAVLEVEVTSD-KADVKWFK----DGQEI- 366
              L+V ++     I +     +  V    N     +V SD +  ++W K    +G +I 
Sbjct: 103 TYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG 162
Query: 367 ----------KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
                     KT+   T +K+  +  L +RN+S  D GEYTC    S+     SA L V+
Sbjct: 163 PDNLPYVQILKTAGVNTTDKEMEV--LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220
Query: 413 E 413
           E
Sbjct: 221 E 221

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN 164
           ++G    P     L    I EG     + +V G P PK+ W+KDGK I  K    T +++
Sbjct: 2   SSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 61
Query: 165 ---THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              T +L     +  D G Y++   N +G +     L V
Sbjct: 62  LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN 286
           ++G    P     L    I EG     + +V G P PK+ W+KDGK I  K    T +++
Sbjct: 2   SSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 61
Query: 287 ---THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              T +L     +  D G Y++   N +G +     L V
Sbjct: 62  LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 261 GEPSPKVEWYKDGKLIK-DRQITSEKNTH-TLTLIQCST--KDKGRYSVKVTNKEGTVES 316
           G P P + W K+GK  K D +I   K  + T ++I  S    DKG Y+  V N+ G++  
Sbjct: 42  GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 317 AANLNV-DQGKAEFIKKLD---DLEVKERENAVLEVEVTSD-KADVKWFK----DGQEI- 366
              L+V ++     I +     +  V    N     +V SD +  ++W K    +G +I 
Sbjct: 102 TYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG 161
Query: 367 ----------KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
                     KT+   T +K+  +  L +RN+S  D GEYTC    S+     SA L V+
Sbjct: 162 PDNLPYVQILKTAGVNTTDKEMEV--LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Query: 413 E 413
           E
Sbjct: 220 E 220

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN---THTLTLIQCS 174
           L    I EG     + +V G P PK+ W+KDGK I  K    T +++   T +L     +
Sbjct: 14  LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 73
Query: 175 TKDKGRYSVKVTNKEGTVESAANLNV 200
             D G Y++   N +G V     L V
Sbjct: 74  LDDDGNYTIMAANPQGRVSCTGRLMV 99

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN---THTLTLIQCS 296
           L    I EG     + +V G P PK+ W+KDGK I  K    T +++   T +L     +
Sbjct: 14  LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 73
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNV 322
             D G Y++   N +G V     L V
Sbjct: 74  LDDDGNYTIMAANPQGRVSCTGRLMV 99

>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From Human Obscurin Length = 102

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G A+F + L + E  E   A+L  E+ S  A V+W K  + ++   +  + ++GT  +L 
Sbjct: 7   GPAKFTEGLRNEEAVEGATAMLWCEL-SKVAPVEWRKGPENLRDGDRYILRQEGTRCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
           I  +++ D GEY C    + TSA L +  LP
Sbjct: 66  ICGLAMADAGEYLCVCGQERTSATLTIRALP 96

>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding Protein C (Mybpc) Length = 95

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
           F KK   +EV     AV E E       V+W + G +I  S K  +  +GT   L +R +
Sbjct: 11  FSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREV 70
Query: 389 SVHDEGEYTCSLPDQETSAELNVVE 413
              D+G Y       +   +L V+E
Sbjct: 71  GPADQGSYAVIAGSSKVKFDLKVIE 95

>pdb|1WAA|F Chain F, Ig27 Protein Domain Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           E+  PL  V+V   E A FEIEL++ D   +W   G+ +A S +  +  DGKK  LI+ +
Sbjct: 7   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHN 66
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
             L   GE S +   T   +S A L V
Sbjct: 67  CQLGMTGEVSFQAAQT---KSAANLKV 90

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIF 475
           ++++ L  V++S  E   F          + WY   G++I  ++ V +  +G + +L I+
Sbjct: 4   QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 63
Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
           +A +EDAG Y C+  D   +  +AT+ +E
Sbjct: 64  NANIEDAGIYRCQATDAKGQTQEATVVLE 92

>pdb|1G1C|A Chain A, I1 Domain From Titin Length = 99

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DR--QITSEKNTHT 167
           E P I E +   ++ +G  A   V+V G+P P+ EWYK+G  I+  DR      E N   
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           L +   + +D     VK  N  G   S A L V
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>pdb|1G1C|A Chain A, I1 Domain From Titin Length = 99

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DR--QITSEKNTHT 289
           E P I E +   ++ +G  A   V+V G+P P+ EWYK+G  I+  DR      E N   
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           L +   + +D     VK  N  G   S A L V
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit) Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIF 475
           ++++ L  V++S  E   F          + WY   G++I  ++ V +  +G + +L I+
Sbjct: 2   QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 61
Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
           +A +EDAG Y C+  D   +  +AT+ +E
Sbjct: 62  NANIEDAGIYRCQATDAKGQTQEATVVLE 90

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 130/325 (40%), Gaps = 55/325 (16%)
Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHS 69
           PP F K+ K          +   +    P+P + W   G+ +  Q  + + F + +    
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG--- 62
Query: 70  YVSIVTIKSIKK-REEGVYTVVAKNREGE----AKMDIPVKVNTGKPEKPSI-LEPLHDV 123
             +++ I+ ++  R+E VY  VA+N  GE    AK+ + ++ +      P+I + P   V
Sbjct: 63  --AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV-LREDQLPSGFPNIDMGPQLKV 119
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKG 179
            +    +A +     G P P++ W+KD  L  D   ++ +     +  L +      D+G
Sbjct: 120 -VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 180 RYSVKVTNKEGT-VESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSI 238
           +Y    TN  G    S ANL V                          +V    P + SI
Sbjct: 178 KYECVATNSAGVRYSSPANLYV--------------------------RVQNVAP-RFSI 210
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQCST 297
           L   H++ +  G   +  V V G P P V+W +  + L  +  +   +N   LT +    
Sbjct: 211 LPMSHEI-MPGGNVNITCVAV-GSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV---- 264
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
           KD   Y+    +  G +E+ A + V
Sbjct: 265 KDSANYTCVAMSSLGVIEAVAQITV 289

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 122/317 (38%), Gaps = 50/317 (15%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 172
           I EP   + ++ G ++ +  Q  G+P P+V W K GK +  ++   I  +++   +  IQ
Sbjct: 10  IKEPKDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 173 C--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT 230
              + +D+  Y     N  G +   A L V                      L   Q+ +
Sbjct: 69  PLRTPRDENVYECVAQNSVGEITVHAKLTV----------------------LREDQLPS 106
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----N 286
           G P     + P   V +    +A +     G P P++ W+KD  L  D   ++ +     
Sbjct: 107 GFPNID--MGPQLKV-VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLR 162
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNVD-QGKAEFIKKLD-DLEVKEREN 343
           +  L +      D+G+Y    TN  G    S ANL V  Q  A     L    E+    N
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN 222
Query: 344 A-VLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC---- 398
             +  V V S    VKW +  +++      T E    + + ++    V D   YTC    
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDL------TPEDDMPVGRNVLELTDVKDSANYTCVAMS 276
Query: 399 SLPDQETSAELNVVELP 415
           SL   E  A++ V  LP
Sbjct: 277 SLGVIEAVAQITVKSLP 293

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTHTLT 169
           P I+EP  D+++TEG +A L  + G   +  V W   +G L+     R   S  +  TL 
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGTSMT-SVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
               + +D G+Y+  VTN  G   ++A LNV
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTHTLT 291
           P I+EP  D+++TEG +A L  + G   +  V W   +G L+     R   S  +  TL 
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGTSMT-SVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
               + +D G+Y+  VTN  G   ++A LNV
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 75/206 (36%), Gaps = 49/206 (23%)
Query: 137 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 192
            GG P P + W K+GK  K + +I   K  N H +L +      DKG Y+  V N+ G++
Sbjct: 43  AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 102
Query: 193 ESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGE 251
               +L+V                                P +P +   L  + S   G 
Sbjct: 103 NHTYHLDVVER----------------------------SPHRPILQAGLPANASTVVGG 134
Query: 252 SAVLSVQVGGEPSPKVEWYK-----------DG----KLIKDRQITSEKNTHTLTLIQCS 296
                 +V  +  P ++W K           DG    K++K   I S  N   L L   +
Sbjct: 135 DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS-NAEVLALFNVT 193
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNV 322
             D G Y  KV+N  G    +A L V
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|1WAA|E Chain E, Ig27 Protein Domain Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           E+  PL  V+V   E A FEIEL++ D   +W   G+ +A S +  +  +GKK  LI+ +
Sbjct: 7   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEEGKKHILILHN 66
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
             L   GE S +  +T   +S A L V
Sbjct: 67  CQLGMTGEVSFQAANT---KSAANLKV 90

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 72/188 (38%), Gaps = 31/188 (16%)
Query: 26  ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY-------VSIVTIKS 78
           EN+ V L         P + W ++     +T  +V  +     SY        + +T KS
Sbjct: 18  ENNPVKLSCAYSGFSSPRVEWKFD---QGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 79  IKKREEGVYTVV----AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLS 134
           + + + G YT +      N  GE K+ + V V    P KP++  P    S T G  AVL+
Sbjct: 75  VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV---PPSKPTVNIP---SSATIGNRAVLT 128
Query: 135 V-QVGGEPSPKVEWYKDG----------KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
             +  G P  +  W+KDG          +   +        T  L     S  D G YS 
Sbjct: 129 CSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
Query: 184 KVTNKEGT 191
           +  N  GT
Sbjct: 189 EARNGYGT 196

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 30/170 (17%)
Query: 255 LSVQVGGEPSPKVEWYKDGKLIK-DRQITSEK--NTHTLTLIQCST--KDKGRYSVKVTN 309
                GG P P   W K+GK  K + +I   K  N H  +LI  S    DKG Y+  V N
Sbjct: 31  FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH-WSLIXESVVPSDKGNYTCVVEN 89
Query: 310 KEGTVESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEV 348
           + G++    +L+V +                     G  EF+ K+   + +     +  V
Sbjct: 90  EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHV 148
Query: 349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
           E    K         + +K +   T +K+  I  L IRN++  D GEYTC
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTC 196

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 111 PEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKN 164
           P  P  +E L  D+SI EG+   ++    GEP+P+V W   G+ I  ++     I +  +
Sbjct: 2   PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             TL ++    +D G Y++ + N+ G+  +  N+++
Sbjct: 62  LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 233 PEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKN 286
           P  P  +E L  D+SI EG+   ++    GEP+P+V W   G+ I  ++     I +  +
Sbjct: 2   PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             TL ++    +D G Y++ + N+ G+  +  N+++
Sbjct: 62  LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 169
           +P  +   +   + EG+SA    +V     P V W+KD + +K      ++   N + LT
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           + +    DKG Y+V+  N  GT E    LNV
Sbjct: 436 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 291
           +P  +   +   + EG+SA    +V     P V W+KD + +K      ++   N + LT
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           + +    DKG Y+V+  N  GT E    LNV
Sbjct: 436 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 169
           +P  +   +   + EG+SA    +V     P V W+KD + +K      ++   N + LT
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           + +    DKG Y+V+  N  GT E    LNV
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 291
           +P  +   +   + EG+SA    +V     P V W+KD + +K      ++   N + LT
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           + +    DKG Y+V+  N  GT E    LNV
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 243 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH---TLTLIQCSTKD 299
           H V   +    +L+VQ   +P+ +V+WY +G  +++       NT    TL ++ C T D
Sbjct: 18  HRVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDD 75
Query: 300 KGRYSVKVTNKEGTVESAANLNVDQG 325
            G Y    TN +G     A L+V  G
Sbjct: 76  SGTYRAVCTNYKGEASDYATLDVTGG 101

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTK 176
           D+SI EG+   ++    GEP+P+V W   G+ I  ++     I +  +  TL ++    +
Sbjct: 16  DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 177 DKGRYSVKVTNKEGTVESAANLNV 200
           D G Y++ + N+ G+  +  N+++
Sbjct: 76  DGGLYTLSLGNEFGSDSATVNIHI 99

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTK 298
           D+SI EG+   ++    GEP+P+V W   G+ I  ++     I +  +  TL ++    +
Sbjct: 16  DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 299 DKGRYSVKVTNKEGTVESAANLNV 322
           D G Y++ + N+ G+  +  N+++
Sbjct: 76  DGGLYTLSLGNEFGSDSATVNIHI 99

>pdb|1TIT|A Chain A, Titin, Ig Repeat 27, Nmr, Minimized Average Structure Length = 98

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           E+  PL  V+V   E A FEIEL++ D   +W   G+ +  S +  +  DGKK  LI+ +
Sbjct: 12  EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 71
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
             L   GE S +  +    +S A L V
Sbjct: 72  CQLGMTGEVSFQAANA---KSAANLKV 95

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 86/241 (35%), Gaps = 58/241 (24%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
           P   NT K EK      LH  ++    +       GG P P   W K+GK  K + +I  
Sbjct: 15  PYWTNTEKXEKR-----LH--AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGG 67
Query: 162 EK--NTHTLTLIQCST--KDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXX 217
            K  N H  +LI  S    DKG Y+  V N+ G++    +L+V                 
Sbjct: 68  YKVRNQH-WSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVER-------------- 112
Query: 218 XXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYK----- 271
                          P +P +   L  + S   G       +V  +  P ++W K     
Sbjct: 113 --------------SPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 158
Query: 272 ------DG----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
                 DG    K++K   I S  N   L L   +  D G Y  KV+N  G    +A L 
Sbjct: 159 GSKYGPDGLPYLKVLKHSGINSS-NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 217
Query: 322 V 322
           V
Sbjct: 218 V 218

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 294
           I +P+  + ++ G ++ +  Q  G+P P+V W K GK +  ++   I  +++   +  IQ
Sbjct: 10  IKKPVDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 295 C--STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEVKERENAVLE 347
              + +D+  Y     N  G V   A L V   DQ    F  I     L+V ER      
Sbjct: 69  PLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATM 128
Query: 348 VEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH-----DEGEYTC 398
           +   S   D  + WFKD   +  S        G I++L    + +      D+G+Y C
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDPST-----SNGRIKQLRSGGLQIESSEETDQGKYEC 181

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 87/239 (36%), Gaps = 54/239 (22%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
           P   NT K EK      LH  ++    +       GG P P + W K+GK  K + +I  
Sbjct: 16  PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXX 218
            K  N H +L +      DKG Y+  V N+ G++    +                     
Sbjct: 69  YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH--------------------- 107
Query: 219 XXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK------- 271
               LD ++ +  +P   + L    + S   G       +V  +  P ++W K       
Sbjct: 108 ----LDVVERSRHRPILQAGLPA--NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGS 161
Query: 272 ----DG----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
               DG    K++K   I S  N   L L   +  D G Y  KV+N  G    +A L V
Sbjct: 162 KYGPDGLPYLKVLKHSGINSS-NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 227 QVNTGKPEKPSILEPLHDV-SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK 285
           Q    +  +  +L  L DV +I EG++  L+  V G+P P+V W K+ K +      + K
Sbjct: 108 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLK 167
Query: 286 ----NTHTLTLIQCSTKDKGRYSVKVTNKEGT 313
                T   T+   ST D G+Y + V NK G+
Sbjct: 168 FEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	785
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-123
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-108
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-106
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-94
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-64
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-39
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-103
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-92
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-92
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-81
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-61
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-80
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-75
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-69
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-64
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-32
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-77
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-76
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-66
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-55
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-39
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-66
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-65
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-64
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-52
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-38
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-28
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-64
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-63
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-55
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-39
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-30
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-55
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-51
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-49
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-34
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-33
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-16
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-54
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-54
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-53
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-49
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-36
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-54
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-50
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-49
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-33
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-21
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-53
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-48
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-47
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-42
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-34
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-18
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-53
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-52
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-52
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-51
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-47
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	8e-38
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-32
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-26
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-51
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-45
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-45
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-38
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-32
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-27
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-19
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-51
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-48
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-37
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-33
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-51
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-30
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-21
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-50
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-50
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-48
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-42
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-35
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-21
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-49
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-46
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-43
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-36
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-35
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-23
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-49
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-48
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-48
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-40
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-28
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-46
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-40
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-37
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-33
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-28
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-04
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-45
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-42
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-41
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-35
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-31
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	9e-26
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-44
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-39
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-33
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-33
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-26
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-42
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-41
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-40
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-34
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-25
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-40
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-36
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-35
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-29
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-29
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-22
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-40
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-32
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-31
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-29
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	8e-20
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-39
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-39
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-37
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-33
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-30
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-23
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-37
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-35
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-28
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-23
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-21
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-37
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-28
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-27
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-23
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-36
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-31
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-29
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-25
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-19
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-36
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-30
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-36
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-32
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-32
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-29
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-35
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-32
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-29
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-28
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-18
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-34
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-32
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-28
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	8e-24
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-34
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	6e-30
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-29
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-23
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-16
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	6e-11
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-34
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-34
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-31
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-27
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-24
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-20
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-33
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-32
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-31
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-27
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-32
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-32
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-29
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-15
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-32
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-30
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-28
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	9e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-32
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-30
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-29
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-24
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-22
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-32
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-31
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-28
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-14
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-31
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-25
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-24
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-31
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	9e-31
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-17
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-16
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-13
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-31
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-28
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-27
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-26
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-20
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-30
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-24
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-19
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-18
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	9e-14
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-12
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	8e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-30
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-30
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-29
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-26
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-20
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-30
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-29
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-29
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-28
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-24
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-30
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-26
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-17
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-12
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-29
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-27
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-19
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-19
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-29
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-17
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-11
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-29
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-29
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-20
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-19
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-29
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-27
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-23
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-19
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-28
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-25
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-19
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-15
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-28
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-21
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-16
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-16
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-28
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-22
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-20
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-19
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-14
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-12
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-28
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-26
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-17
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	6e-17
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	8e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-28
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-26
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-19
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-08
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-28
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-25
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-19
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-19
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-15
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-12
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-27
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-25
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-20
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-20
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	9e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-27
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-25
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-23
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-24
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-20
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-27
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	7e-27
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-25
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-13
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-27
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-23
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-18
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-18
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-27
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-26
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-22
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-20
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-13
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-13
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	8e-27
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-27
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-19
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-19
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	6e-13
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-26
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-21
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-17
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-17
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-14
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-13
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-26
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-26
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-22
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-17
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-16
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-16
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-26
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-19
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-16
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-16
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-08
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-26
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-26
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-26
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-24
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-17
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-17
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-14
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-26
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-25
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-21
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-26
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-24
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	7e-20
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	7e-26
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-23
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-22
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-19
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-09
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-26
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-26
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	7e-13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-25
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-25
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-22
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-14
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-14
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-14
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-04
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-25
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-24
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-16
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-16
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-25
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-25
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-18
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-17
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-25
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-24
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-18
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-25
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-24
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-19
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-19
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	8e-07
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-25
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-25
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-20
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-16
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-13
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	5e-04
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-25
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-24
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-17
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-16
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-16
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-06
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-25
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-24
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-21
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-15
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-25
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	7e-24
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-17
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-17
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-12
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	8e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	8e-25
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-24
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-17
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-17
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	8e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-06
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-24
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-24
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	8e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-16
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-24
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	8e-24
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	8e-21
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-18
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-24
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-23
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-22
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-21
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-21
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-24
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-23
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-19
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-15
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-15
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-24
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-24
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-20
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-14
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-24
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-22
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-20
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-13
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-23
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-21
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-20
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-19
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	8e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-23
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-23
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-20
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	8e-23
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-19
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-17
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-17
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-22
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-20
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-15
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-22
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-22
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-18
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-16
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-06
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-22
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-21
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	6e-18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	7e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-13
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-20
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-20
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-22
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	9e-22
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-12
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-21
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-20
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-18
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-15
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-18
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-17
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-19
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-17
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-17
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-16
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	2e-19
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	6e-17
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	3e-11
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	5e-11
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	6e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-19
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	9e-18
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-16
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-18
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-16
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-14
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-15
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	6e-18
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-04
2ens_A	96	Advanced glycosylation END product-specific recept	6e-18
2ens_A	96	Advanced glycosylation END product-specific recept	1e-16
2ens_A	96	Advanced glycosylation END product-specific recept	7e-14
2ens_A	96	Advanced glycosylation END product-specific recept	2e-09
2ens_A	96	Advanced glycosylation END product-specific recept	4e-09
2ens_A	96	Advanced glycosylation END product-specific recept	2e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-18
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	9e-14
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-11
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-11
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	8e-18
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	8e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	8e-18
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-17
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-14
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-17
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-17
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-17
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-09
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-14
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-17
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	8e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-15
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-17
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-14
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	8e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-17
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-17
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	8e-17
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-08
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	9e-17
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-05
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-15
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-15
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-12
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-13
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-12
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-12
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	5e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-15
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-14
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-14
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-10
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-14
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-10
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	8e-15
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-10
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	8e-08
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	7e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-13
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	8e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-13
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-13
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-09
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-07
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-13
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-09
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-12
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	5e-12
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	9e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	8e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	9e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	9e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-11
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-10
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-10
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	9e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-07
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-06
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	7e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	6e-09
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	8e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	9e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	6e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-04
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	1e-07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	1e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	7e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	9e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	1e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	6e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	6e-06
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	4e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	3e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	3e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	4e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	6e-05
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	7e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	9e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	2e-04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	3e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	4e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	4e-04
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	5e-04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	5e-04
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	7e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  379 bits (976), Expect = e-123
 Identities = 148/654 (22%), Positives = 248/654 (37%), Gaps = 106/654 (16%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP F +  + V A     +TL+ ++   PE  + WY     L+         ++++ S V
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
               I  +   + G YT  A+N  G       + +   +   PS    L DV  T G   
Sbjct: 65  ----INKVDHSDVGEYTCKAENSVGAVASSAVLVI-KERKLPPSFARKLKDVHETLGFPV 119

Query: 132 VLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
               ++ G    +V WYKDG+L+K   + Q +   N  TL ++Q      G+Y+   +N 
Sbjct: 120 AFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP 179

Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
            GT  S+A L +                                   P        V + 
Sbjct: 180 LGTASSSAKLTLSE-----------------------------HEVPPFFDLKPVSVDLA 210

Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKGRYSV 305
            GES      V G    K+ W KD + I+     ++T  +NT TLT+++ +  D G+Y+ 
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 270

Query: 306 KVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVTSD-KADVKWFKDG 363
             +N  G    +A L V Q    FIKKL+    VK+ E+   E ++    +  V W+KD 
Sbjct: 271 YASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 329

Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
            EI+ S K  +    ++  L + N+SV D G+YTC    +     +S  L V E PP   
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFR 388

Query: 420 VPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA 477
                V+  +      E EL  G     V W+KD +E+   +   +  +     + I + 
Sbjct: 389 KKPHPVETLKGADVHLECELQ-GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 447

Query: 478 GLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPD 536
              D GEY C+   D G      ++T++AP                              
Sbjct: 448 DSADIGEYQCKASNDVGSDTCVGSITLKAP------------------------------ 477

Query: 537 IQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN 596
                                 P F+++  + +      ++L A ++ +   S+ WF++ 
Sbjct: 478 ----------------------PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK 515

Query: 597 KPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
             ++       I +      L+   A+   +AG Y     NE G+    A ++V
Sbjct: 516 GEIVRESDNIWISYSENIATLQFSRAEPA-NAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  341 bits (875), Expect = e-108
 Identities = 130/647 (20%), Positives = 226/647 (34%), Gaps = 143/647 (22%)

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 165
           G  E P  +EPL  V    GE   L  +V G P  ++ WYK+   ++     ++  + N 
Sbjct: 1   GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
            +L + +    D G Y+ K  N  G V S+A L +                         
Sbjct: 61  ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVI------------------------- 95

Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQIT 282
                 +   PS    L DV  T G       ++ G    +V WYKDG+L+K   + Q +
Sbjct: 96  ----KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS 151

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DQGKAEFIKKLDDLEVKE 340
              N  TL ++Q      G+Y+   +N  GT  S+A L +   +    F  K   +++  
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211

Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
            E+   +  VT      + W KD +EI+      +        L +  ++  D G+YTC 
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271

Query: 399 ---SLPDQETSAELNVVELPPEISVPLQDVK-VSRDEKASFEIELTKGD--ALVKWYKDG 452
                     SA+L V E PP     L+  + V +DE   +E ++  G     V WYKD 
Sbjct: 272 ASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDE 329

Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFL 511
            EI  S    +S       L +++  +ED+G+Y+C      G   S  +L V+ P     
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP----- 384

Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
                                                          P+F ++       
Sbjct: 385 -----------------------------------------------PVFRKKPHPVETL 397

Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 631
           +   + L  +++ +P   + W ++ + L S  K + + +     + +       D G+Y+
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV-DSADIGEYQ 456

Query: 632 VVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE 691
             A+N++GS T    +T+                                          
Sbjct: 457 CKASNDVGSDTCVGSITLKA---------------------------------------- 476

Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
             P        ++    GE+++++   +   P    W  +   IV  
Sbjct: 477 -PPRFV-KKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE 521

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  337 bits (866), Expect = e-106
 Identities = 122/511 (23%), Positives = 207/511 (40%), Gaps = 56/511 (10%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
             +PP+F++K K V+      V  E R+       + WY +GE L++   +  S   ++ 
Sbjct: 98  RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA 157

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
           +    + I    +   G Y   A N  G A     + ++      P        V +  G
Sbjct: 158 T----LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS-EHEVPPFFDLKPVSVDLALG 212

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
           ES      V G    K+ W KD + I+     ++T  +NT TLT+++ +  D G+Y+   
Sbjct: 213 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 272

Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
           +N  G    +A L V                                 E P  ++ L   
Sbjct: 273 SNVAGKDSCSAQLGVQ--------------------------------EPPRFIKKLEPS 300

Query: 246 SI-TEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKG 301
            I  + E      ++GG P  KV WYKD   I++    +++  ++   L +   S +D G
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360

Query: 302 RYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWF 360
            Y+ +  N  G+  S+ +L V +    F KK   +E  +  +  LE E+       V W 
Sbjct: 361 DYTCEAHNAAGSASSSTSLKV-KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419

Query: 361 KDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPP 416
           KD +E+++ KK  I  +  +  + I N+   D GEY C     +        + +   PP
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA-PP 478

Query: 417 EISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAF-SENVTLSIDGKKQKLI 473
                L D+     E+   +  +  G     V W+KD  EI   S+N+ +S       L 
Sbjct: 479 RFVKKLSDISTVVGEEVQLQATIE-GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQ 537

Query: 474 IFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
              A   +AG+Y+C++  + G +E  ATL+V
Sbjct: 538 FSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  304 bits (781), Expect = 3e-94
 Identities = 128/614 (20%), Positives = 203/614 (33%), Gaps = 156/614 (25%)

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 287
           G  E P  +EPL  V    GE   L  +V G P  ++ WYK+   ++     ++  + N 
Sbjct: 1   GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DQGKAEFIKKLDDLEVKERENAV 345
            +L + +    D G Y+ K  N  G V S+A L +   +    F +KL D+         
Sbjct: 61  ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVA 120

Query: 346 LEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SL 400
            E  +       V W+KDG+ +K    +       +  L I        G+Y C     L
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180

Query: 401 PDQETSAELNVV--ELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIA 456
               +SA+L +   E+PP   +    V ++  E  +F+  +T G A   + W KD +EI 
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIR 239

Query: 457 FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLP 515
              N  +++      L +      DAG+Y+C   +  G     A L V+ P         
Sbjct: 240 PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP--------- 290

Query: 516 SVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE-EKTVKEKG 574
                                                      P FI++ E  + VK+  
Sbjct: 291 -------------------------------------------PRFIKKLEPSRIVKQDE 307

Query: 575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 634
             R   K+  SP   ++W+++   +  S K R  F     +LE+     E D+GDY   A
Sbjct: 308 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE-DSGDYTCEA 366

Query: 635 TNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAP 694
            N  GSA+    + V                                            P
Sbjct: 367 HNAAGSASSSTSLKVKE-----------------------------------------PP 385

Query: 695 VIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR-------------- 740
           V    P P V   KG D+ +E   +  PP +  W  +   +   K+              
Sbjct: 386 VFRKKPHP-VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 444

Query: 741 -----------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD 771
                                        +K    F+KKL D+     E   L+  +   
Sbjct: 445 LNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGA 504

Query: 772 -KADVKWFKNNSLI 784
               V WFK+   I
Sbjct: 505 EPISVAWFKDKGEI 518

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  224 bits (572), Expect = 2e-64
 Identities = 91/510 (17%), Positives = 154/510 (30%), Gaps = 144/510 (28%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
           FI+ L+ +E    E   L+ +V    +  + W+K+  +++++    ++ K  +  L+I  
Sbjct: 8   FIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINK 67

Query: 388 ISVHDEGEYTC----SLPDQETSAELNVVE--LPPEISVPLQDVKVSRDEKASFEIELTK 441
           +   D GEYTC    S+    +SA L + E  LPP  +  L+DV  +     +FE  +  
Sbjct: 68  VDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRING 127

Query: 442 GDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKA 499
            + L V WYKDG+ +    N+  S       L I        G+Y+C      G   S A
Sbjct: 128 SEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSA 187

Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
            LT+    V                                                  P
Sbjct: 188 KLTLSEHEV-------------------------------------------------PP 198

Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 619
            F  +     +    +      V  +    I W ++N+ +      +         L + 
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 258

Query: 620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPR 679
           +     DAG Y   A+N  G  +  A++                                
Sbjct: 259 KVTKG-DAGQYTCYASNVAGKDSCSAQLG------------------------------- 286

Query: 680 QSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSK 739
                     V+  P       P  +VK+ E  + E +    P  K  W  + T I  S 
Sbjct: 287 ----------VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS 336

Query: 740 R-------------------------------------------VKGKAEFIKKLDDLEV 756
           +                                           VK    F KK   +E 
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVET 396

Query: 757 KERENAVLEVEVTSD-KADVKWFKNNSLIK 785
            +  +  LE E+       V W K+   ++
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELR 426

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  154 bits (390), Expect = 1e-39
 Identities = 63/418 (15%), Positives = 118/418 (28%), Gaps = 136/418 (32%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
           PP    PL+ V+ +  E  + + ++    +  + WYK+  ++  +    +        L+
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 474 IFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
           I      D GEY+C+     G   S A L ++   +                        
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL------------------------ 100

Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
                                     P F  + ++        +    ++  S    + W
Sbjct: 101 -------------------------PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135

Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
           +++ + L      +  F      L++ + D     G Y   A+N LG+A+  A++T+   
Sbjct: 136 YKDGELLKDDANLQTSFIHNVATLQILQTDQS-HVGQYNCSASNPLGTASSSAKLTLSEH 194

Query: 653 KVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDL 712
                                                 E  P  D   P  V +  GE  
Sbjct: 195 --------------------------------------EVPPFFD-LKPVSVDLALGESG 215

Query: 713 KIEVRFKALPPPKAEWTVNGTVIVPSKR-------------------------------- 740
             +       P K  W  +   I P                                   
Sbjct: 216 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275

Query: 741 -----------VKGKAEFIKKLDDLE-VKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
                      V+    FIKKL+    VK+ E+   E ++    +  V W+K+ + I+
Sbjct: 276 AGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 333

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 99.9 bits (249), Expect = 5e-22
 Identities = 45/276 (16%), Positives = 75/276 (27%), Gaps = 87/276 (31%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
           + P FIE  E         I L  KV  +P   I W++ +  L S+P  +  F      L
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
            + + D   D G+Y   A N +G+    A + +                           
Sbjct: 64  VINKVDHS-DVGEYTCKAENSVGAVASSAVLVI--------------------------- 95

Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                      K  +  P         V    G  +  E R     P +  W  +G ++ 
Sbjct: 96  -----------KERKLPPSFARKLKD-VHETLGFPVAFECRINGSEPLQVSWYKDGELLK 143

Query: 737 PSKRVK-------------------------------GKAE---------------FIKK 750
               ++                               G A                F  K
Sbjct: 144 DDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLK 203

Query: 751 LDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
              +++   E+   +  VT      + W K+N  I+
Sbjct: 204 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 51/141 (36%)

Query: 696 IDPP----PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK--------- 742
           ++PP    P   V    GE + ++ +    P  +  W    T +  +   K         
Sbjct: 3   MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62

Query: 743 ----------------------GKAE---------------FIKKLDDLEVKERENAVLE 765
                                 G                  F +KL D+          E
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 766 VEVTSD-KADVKWFKNNSLIK 785
             +       V W+K+  L+K
Sbjct: 123 CRINGSEPLQVSWYKDGELLK 143

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  335 bits (861), Expect = e-103
 Identities = 127/682 (18%), Positives = 205/682 (30%), Gaps = 135/682 (19%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                 K        +S + L       P P   WY   E       VV +D   +    
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND--RVKQVS 305

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
             + IK     + G Y  V  N  G   ++  + V        S        ++  G  A
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT----APLSAKIDPPTQTVDFGRPA 361

Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
           V + Q  G P   V W KDGK I         +   L +     +DKG Y   V N   +
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIGH-------SESVLRIESVKKEDKGMYQCFVRNDRES 414

Query: 192 VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGE 251
            E++A L +                                   P I +   + ++  G 
Sbjct: 415 AEASAELKLGGRFD-----------------------------PPVIRQAFQEETMEPGP 445

Query: 252 SAVLSVQVGGEPSPKVEWYKDGKLI--------KDRQITSEKNTHTLTLIQCSTKDKGRY 303
           S  L    GG P+P++ W  DGK I              +      L +      D G Y
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 505

Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKD 362
                +K G  E +A LNV  G   +I++++   +   E  ++   V       + W +D
Sbjct: 506 KCIAKSKVGVAEHSAKLNV-YGLP-YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563

Query: 363 GQEIKTSKKVTIEKKGTIRKLLIRNISV-HDEGEYTCS-----LPDQETSAELNVVELPP 416
            + +  ++K  +   GT   L+I N+    D+  YTC            S E+ V+ LP 
Sbjct: 564 NRALPINRKQKVFPNGT---LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620

Query: 417 EISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLS-IDGKKQKLI 473
            I    ++      +  +    +  GD    + W  DG+ I+    +T S +  +   L 
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLT 680

Query: 474 IFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
           I +     AG ++C      G ++    L V  P                          
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-------------------------- 714

Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
                                     P +I    +K   +    ++  K    P P + W
Sbjct: 715 --------------------------PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 748

Query: 593 FRNNKPLLSSPKK---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +         K     +    E   L +       + G Y   A N +GS      +  
Sbjct: 749 KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT-NEGYYLCEAINGIGSGLSAVIMIS 807

Query: 650 DVEKVGRPPINSIDIDRNHVHH 671
               V             H HH
Sbjct: 808 ----VQAHH---------HHHH 816

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  306 bits (785), Expect = 2e-92
 Identities = 141/857 (16%), Positives = 236/857 (27%), Gaps = 213/857 (24%)

Query: 7   ILEGIPPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWY-YNGEPLQETDEVVFSDQ 64
             +   P F K+ T  +    ++   +E +    P P+++W   +G  + +   +     
Sbjct: 33  DADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 92

Query: 65  SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDV 123
                +         ++    VY  +A+N+ G     D+ V+              ++  
Sbjct: 93  DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA----VVAQYYEADVNKE 148

Query: 124 SITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQITSEKNTH-----TLTLIQCST 175
            +  G SAV+   +     +    V W+ D +         +          L + +   
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 208

Query: 176 KD-KGRYSVKVTNKEG-TVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233
           +D    Y  +  ++       +A           S   P                     
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSL---------------- 252

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-----EKNTH 288
                       + +   +  L     G P P   WYK  +    +Q        ++ + 
Sbjct: 253 ------AKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG 306

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
           TL +     +D G+Y   V N  G       L V               V     AV   
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTC 365

Query: 349 EVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQ 403
           + T +    V W KDG+ I  S+ V          L I ++   D+G Y C         
Sbjct: 366 QYTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESA 415

Query: 404 ETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE 459
           E SAEL +     PP I    Q+  +        +     G+    + W  DGK+IA ++
Sbjct: 416 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV-AGGNPTPEISWELDGKKIANND 474

Query: 460 NVTLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTK 513
              +             L I S    D G Y C      G  E  A L V          
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV---------- 524

Query: 514 LPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEK 573
                                                          +I + E+K +   
Sbjct: 525 -------------------------------------------YGLPYIRQMEKKAIVAG 541

Query: 574 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 633
            T+ +   V   P  SIVW R+N+ L  + K++   +G    L ++  +  +D   Y  V
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT---LIIENVERNSDQATYTCV 598

Query: 634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETA 693
           A N+ G                                     S R S EV V       
Sbjct: 599 AKNQEG------------------------------------YSARGSLEVQVMVL---- 618

Query: 694 PVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA-EWTVNGTVIVPSKR------------ 740
           P I P    E   + G+ L +         P   +WT++G  I                 
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678

Query: 741 --------------------------------VKGKAEFIKKLDDLEVKERENAVLEVEV 768
                                           V     +I +  D    +  +A +E + 
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKA 738

Query: 769 TSD-KADVKWFKNNSLI 784
               K  V W K     
Sbjct: 739 DGFPKPQVTWKKAVGDT 755

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  305 bits (782), Expect = 6e-92
 Identities = 116/783 (14%), Positives = 222/783 (28%), Gaps = 176/783 (22%)

Query: 2   SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRL---VAVPEPDLLWYYNGEPLQETDE 58
           S    +   +   +       +    +   ++  +   VA     + W+ + E       
Sbjct: 128 SRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA 187

Query: 59  VV---FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE-------AKMDIPVKVNT 108
                +        ++  V      +     Y    K+R              +  +  +
Sbjct: 188 EYDGKYLVLPSGELHIREVG----PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-----EK 163
               K   L      + +   +  L     G P P   WYK  +    +Q        ++
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303

Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL 223
            + TL +     +D G+Y   V N  G       L V                       
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT---------------------- 341

Query: 224 DTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS 283
                        S        ++  G  AV + Q  G P   V W KDGK I       
Sbjct: 342 ----------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH----- 386

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKER 341
             +   L +     +DKG Y   V N   + E++A L +          +   +  ++  
Sbjct: 387 --SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPG 444

Query: 342 ENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISVHDEGE 395
            +  L+     +   ++ W  DG++I  + +  + +  T+       L I ++  +D G 
Sbjct: 445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504

Query: 396 YTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWY 449
           Y C     +   E SA+LNV    P I   ++   +   E       +  G  +  + W 
Sbjct: 505 YKCIAKSKVGVAEHSAKLNVYG-LPYIR-QMEKKAIVAGETLIVTCPVA-GYPIDSIVWE 561

Query: 450 KDGKEIAFSENVTLSIDGKKQKLIIFSAGL-EDAGEYSCRVGDTGDKESKATLTVEAPAV 508
           +D + +  +    +  +G    LII +     D   Y+C   +     ++ +L V+    
Sbjct: 562 RDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQ---- 614

Query: 509 EFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK 568
                   V ++P                                      +    FEE 
Sbjct: 615 --------VMVLP-------------------------------------RIIPFAFEEG 629

Query: 569 TVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-ILELKEADSETD 626
             +    + L   V     P +I W  + + +           G    +L ++  ++   
Sbjct: 630 PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-H 688

Query: 627 AGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDV 686
           AG++   A N  G       + V V                                   
Sbjct: 689 AGNFTCHARNLAGHQQFTTPLNVYV----------------------------------- 713

Query: 687 EKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
                  P      P +    +G D K+E +    P P+  W           +   K++
Sbjct: 714 ------PPRWI-LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSD 766

Query: 747 FIK 749
            I+
Sbjct: 767 NIR 769

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  275 bits (705), Expect = 6e-81
 Identities = 112/797 (14%), Positives = 208/797 (26%), Gaps = 224/797 (28%)

Query: 75  TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVL 133
            + + + +   ++  VA    G   +         K   P  L EP + +  +    A +
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKG--PVFLKEPTNRIDFSNSTGAEI 59

Query: 134 SVQVGGEPSPKVEWYK-DGKLIKD-RQITSEKNTHTLTLIQCSTKDK------GRYSVKV 185
             +  G P P++ W + DG  + D   +    +   L       +D         Y+   
Sbjct: 60  ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119

Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
            N+ G++ S                                               ++  
Sbjct: 120 RNQFGSIISRDVHVRAVV-------------------------------AQYYEADVNKE 148

Query: 246 SITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQITSEKNTH-----TLTLIQCST 297
            +  G SAV+   +     +    V W+ D +         +          L + +   
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 208

Query: 298 KD-KGRYSVKVTNKEGT---VESAANLNVDQG-------KAEFIKKLDDLEVKERENAVL 346
           +D    Y  +  ++      + +     V          K   + K D           L
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268

Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTI--RKLLIRNISVHDEGEYTC----S 399
                       +W+K  +     + V +  +       L+I++  V D G+Y C    S
Sbjct: 269 LCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 328

Query: 400 LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFS 458
           +  +     L V   P    +      V     A F  + T      V W KDGK I  S
Sbjct: 329 VGGESVETVLTVTA-PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS 387

Query: 459 ENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSV 517
           E+V          L I S   ED G Y C V  D    E+ A L +              
Sbjct: 388 ESV----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD--------- 428

Query: 518 TLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR 577
                                                    P+  + F+E+T++   ++ 
Sbjct: 429 ----------------------------------------PPVIRQAFQEETMEPGPSVF 448

Query: 578 LMAKVKASPAPSIVWFRNNKPLLSSPKKR-----EIFDGENIILELKEADSETDAGDYKV 632
           L      +P P I W  + K + ++ + +      +       L +       D G YK 
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV-HANDGGLYKC 507

Query: 633 VATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVET 692
           +A +++G A H A++                                          V  
Sbjct: 508 IAKSKVGVAEHSAKLN-----------------------------------------VYG 526

Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------ 740
            P I       ++   GE L +       P     W  +   +  +++            
Sbjct: 527 LPYIRQMEKKAIVA--GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIE 584

Query: 741 ------------------------------VKGKAEFIKK-LDDLEVKERENAVLEVEVT 769
                                         V      I    ++   +  +   L   V 
Sbjct: 585 NVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644

Query: 770 SDK--ADVKWFKNNSLI 784
                 ++ W  +   I
Sbjct: 645 GGDLPLNIDWTLDGQAI 661

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  219 bits (559), Expect = 8e-61
 Identities = 101/703 (14%), Positives = 187/703 (26%), Gaps = 220/703 (31%)

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
           + +     K    ++       G+   AAN      +            P  +       
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK-----------GPVFLK------ 43

Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD-RQITSEK 285
                       EP + +  +    A +  +  G P P++ W + DG  + D   +    
Sbjct: 44  ------------EPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS 91

Query: 286 NTHTLTLIQCSTKDK------GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVK 339
           +   L       +D         Y+    N+ G++ S            +   ++   V 
Sbjct: 92  SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 151

Query: 340 ERENAVLEVEVTSDKAD----VKWFKDGQEI-----KTSKKVTIEKKGTIRKLLIRNISV 390
              +AV++  + S  AD    V W  D +E      +   K  +   G    L IR +  
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE---LHIREVGP 208

Query: 391 HD-EGEYTC-------SLPDQETSAELNVVELPPEISVP-------LQDVKVSRDEKASF 435
            D    Y C              +    V+  P   +VP             S     + 
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268

Query: 436 EIELTKGDAL--VKWYKDGKEIAFSENVTLS--IDGKKQKLIIFSAGLEDAGEYSCRVG- 490
                 G  +   +WYK  +     + V L+  +      LII  A +ED+G+Y C V  
Sbjct: 269 LCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327

Query: 491 DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTC 550
             G +  +  LTV AP                                            
Sbjct: 328 SVGGESVETVLTVTAP-------------------------------------------- 343

Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
                            +TV          +   +P  ++ W ++ K +  S        
Sbjct: 344 --------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------ 389

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVH 670
               +L ++    E D G Y+    N+  SA   A + +                     
Sbjct: 390 ----VLRIESVKKE-DKGMYQCFVRNDRESAEASAELKLGG------------------- 425

Query: 671 HLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTV 730
                                  PVI      E  ++ G  + ++      P P+  W +
Sbjct: 426 -------------------RFDPPVI-RQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 465

Query: 731 NGTVIVPSKRVK------------------------------------GKAE-------- 746
           +G  I  + R +                                    G AE        
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525

Query: 747 ---FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
              +I++++   +   E  ++   V       + W ++N  + 
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP 568

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  269 bits (688), Expect = 4e-80
 Identities = 97/656 (14%), Positives = 192/656 (29%), Gaps = 132/656 (20%)

Query: 7   ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
           +   +P            E+   V              LW+ N + L  +  +  S+ + 
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN- 163

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
                  +T+ ++ + +   Y    +N     + D  V +N         + P  + S  
Sbjct: 164 -----RTLTLFNVTRNDTASYKCETQNPVSARRSD-SVILNVLYGPDAPTISP-LNTSYR 216

Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
            GE+  LS      P  +  W+ +G           ++T  L +   +  + G Y+ +  
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQAH 268

Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
           N +  +       +              P P++                       +   
Sbjct: 269 NSDTGLNRTTVTTI--------TVYAEPPKPFIT--------------------SNNSNP 300

Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
           + + ++  L+ +   + +  + W  +  L    ++    +  TLTL+  +  D G Y   
Sbjct: 301 VEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG 360

Query: 307 VTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQ 364
           + N+     S    LNV  G  +          +   N  L     S+  A   W  DG 
Sbjct: 361 IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN 420

Query: 365 EIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV---ELPPE 417
             + +           ++L I NI+  + G YTC    S      +    +    ELP  
Sbjct: 421 IQQHT-----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKP 469

Query: 418 ISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA 477
                    V   +  +F  E    +    W+ +G+ +  S  + LS     + L +F+ 
Sbjct: 470 SISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNV 527

Query: 478 GLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
              DA  Y C + ++     S   TL V                               P
Sbjct: 528 TRNDARAYVCGIQNSVSANRSDPVTLDVLYG----------------------------P 559

Query: 536 DIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN 595
           D                         I    + +      + L     ++P+P   W  N
Sbjct: 560 DT-----------------------PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596

Query: 596 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
             P   +            +L + +  +  + G Y    +N      +    ++ V
Sbjct: 597 GIPQQHTQ-----------VLFIAKI-TPNNNGTYACFVSNLATGRNNSIVKSITV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  255 bits (653), Expect = 4e-75
 Identities = 105/743 (14%), Positives = 206/743 (27%), Gaps = 172/743 (23%)

Query: 21  PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVT----- 75
           P    E  EV L V  +        WY           + +   +   +     +     
Sbjct: 8   PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67

Query: 76  -------IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                  I++I + + G YT+     +   + +   +           +   +   + + 
Sbjct: 68  YPNASLLIQNIIQNDTGFYTLHVIKSDLVNE-EATGQFRVYPELPKPSISSNNSKPVEDK 126

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
           ++   + +   +      W+ + + L    ++       TLTL   +  D   Y  +  N
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQN 185

Query: 188 KEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
                 S    LNV  Y P     +P                               + S
Sbjct: 186 PVSARRSDSVILNV-LYGPDAPTISPL------------------------------NTS 214

Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
              GE+  LS      P  +  W+ +G           ++T  L +   +  + G Y+ +
Sbjct: 215 YRSGENLNLSCHAASNPPAQYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQ 266

Query: 307 VTNKEGTVESAANLNVDQGKAE---FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDG 363
             N +  +       +         FI   +   V++ +   L  E         W+ + 
Sbjct: 267 AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNN 326

Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEI 418
           Q +  S ++ +      R L + +++ +D G Y C +      D      LNV+  P + 
Sbjct: 327 QSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384

Query: 419 SVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           ++             S        +  A   W  DG     +           Q+L I +
Sbjct: 385 TISPSYTYYRPGVNLSLSCH-AASNPPAQYSWLIDGNIQQHT-----------QELFISN 432

Query: 477 AGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
              +++G Y+C+  ++          T+   A                            
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP------------------------- 467

Query: 536 DIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN 595
                                     I     K V++K  +    + +A    + +W+ N
Sbjct: 468 -----------------------KPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVN 503

Query: 596 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 655
            + L  SP+ +      N  L L    +  DA  Y     N + +      VT+D     
Sbjct: 504 GQSLPVSPRLQLSNG--NRTLTLFNV-TRNDARAYVCGIQNSVSANRSDP-VTLD----- 554

Query: 656 RPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE 715
                                             V   P      PP+     G +L + 
Sbjct: 555 ----------------------------------VLYGPDTPIISPPDSSYLSGANLNLS 580

Query: 716 VRFKALPPPKAEWTVNGTVIVPS 738
               + P P+  W +NG     +
Sbjct: 581 CHSASNPSPQYSWRINGIPQQHT 603

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  240 bits (614), Expect = 1e-69
 Identities = 73/507 (14%), Positives = 145/507 (28%), Gaps = 78/507 (15%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P   +             + L     + P     W+ NG   Q T               
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST--------------- 247

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
             + I +I     G YT  A N +          +          +   +   + + ++ 
Sbjct: 248 QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAV 307

Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
            L+ +   + +  + W  +  L    ++    +  TLTL+  +  D G Y   + N+   
Sbjct: 308 ALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSV 367

Query: 192 VES-AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEG 250
             S    LNV  Y P +   +P                                     G
Sbjct: 368 DHSDPVILNVL-YGPDDPTISPS------------------------------YTYYRPG 396

Query: 251 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 310
            +  LS      P  +  W  DG +         ++T  L +   + K+ G Y+ +  N 
Sbjct: 397 VNLSLSCHAASNPPAQYSWLIDGNIQ--------QHTQELFISNITEKNSGLYTCQANNS 448

Query: 311 EGTVESAANLNVDQGKA---EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIK 367
                      +          I   +   V++++      E  +      W+ +GQ + 
Sbjct: 449 ASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLP 508

Query: 368 TSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPL 422
            S ++ +      R L + N++ +D   Y C +      ++     L+V+  P    +  
Sbjct: 509 VSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566

Query: 423 QDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLED 481
            D         +         +    W  +G     +           Q L I      +
Sbjct: 567 PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVLFIAKITPNN 615

Query: 482 AGEYSCRVG-DTGDKESKATLTVEAPA 507
            G Y+C V      + +    ++   A
Sbjct: 616 NGTYACFVSNLATGRNNSIVKSITVSA 642

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  226 bits (577), Expect = 2e-64
 Identities = 99/720 (13%), Positives = 182/720 (25%), Gaps = 184/720 (25%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--------------- 166
             ++ EG+  +L V    +      WYK  ++  +RQI                      
Sbjct: 8   PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67

Query: 167 ----TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
               +L +      D G Y++ V   +   E A                           
Sbjct: 68  YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEA--------------------------- 100

Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQI 281
             T Q           +   +   + + ++   + +   +      W+ + + L    ++
Sbjct: 101 --TGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL 157

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKE 340
                  TLTL   +  D   Y  +  N      S    LNV  G         +   + 
Sbjct: 158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRS 217

Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
            EN  L     S+  A   WF +G   +++           ++L I NI+V++ G YTC 
Sbjct: 218 GENLNLSCHAASNPPAQYSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQ 266

Query: 400 LPDQETSAE------LNVVELPPEISV-PLQDVKVSRDEKASFEIELTKGDALVKWYKDG 452
             + +T         + V   PP+  +       V  ++  +   E    +    W+ + 
Sbjct: 267 AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNN 326

Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFL 511
           + +  S  + LS D +   L + S    D G Y C + +      S   +          
Sbjct: 327 QSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVI---------- 374

Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
                                         LN+   P                      +
Sbjct: 375 ------------------------------LNVLYGP----------DDPTISPSYTYYR 394

Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 631
               + L     ++P     W  +      + +           L +    +E ++G Y 
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE-----------LFISNI-TEKNSGLYT 442

Query: 632 VVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE 691
             A N     +     T+ V      P                  S   S  V+ +  V 
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSI----------------SSNNSKPVEDKDAVA 486

Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPP--------------------------PK 725
                +      +    G+ L +  R +                                
Sbjct: 487 FTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSAN 546

Query: 726 AEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
               V   V+            I    D       N  L     S+      W  N    
Sbjct: 547 RSDPVTLDVLYGPDT------PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ 600

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  131 bits (331), Expect = 5e-32
 Identities = 68/507 (13%), Positives = 118/507 (23%), Gaps = 147/507 (28%)

Query: 335 DLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKT-------------------SKKVTI 374
              V E +  +L V           W+K  +                       S +  I
Sbjct: 8   PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67

Query: 375 EKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE------LNVVELPPEISVPLQDVKVS 428
               +   LLI+NI  +D G YT  +   +   E          ELP           V 
Sbjct: 68  YPNAS---LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVE 124

Query: 429 RDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
             +  +F  E    DA   W+ + + +  S  + LS   +   L +F+    D   Y C 
Sbjct: 125 DKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRT--LTLFNVTRNDTASYKCE 182

Query: 489 V--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI 546
                +  +     L V                                           
Sbjct: 183 TQNPVSARRSDSVILNVLYGP--------------------------------------- 203

Query: 547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR 606
                                 + +    + L     ++P     WF N     S+ +  
Sbjct: 204 ------------DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-- 249

Query: 607 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDR 666
                    L +       ++G Y   A N           T+ V     PP   I    
Sbjct: 250 ---------LFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITV--YAEPPKPFI---- 293

Query: 667 NHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA 726
                     +   S  V+ E  V      +      +     + L +  R +       
Sbjct: 294 ----------TSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSND--- 340

Query: 727 EWTVNGTVIVPS---------------------------KRVKGKAEFIKKLDDLEVKER 759
               N T+ + S                             + G  +          +  
Sbjct: 341 ----NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396

Query: 760 ENAVLEVEVTSD-KADVKWFKNNSLIK 785
            N  L     S+  A   W  + ++ +
Sbjct: 397 VNLSLSCHAASNPPAQYSWLIDGNIQQ 423

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 78.1 bits (192), Expect = 4e-15
 Identities = 56/421 (13%), Positives = 102/421 (24%), Gaps = 145/421 (34%)

Query: 417 EISVPLQDVKVSRDEKASFEIE-LTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK---- 471
           ++++      V+  ++    +  L +      WYK  +     + +   I  ++      
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 472 ------------LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
                       L+I +    D G Y+  V  +     +AT                   
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY------------- 107

Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
                                              P      I     K V++K  +   
Sbjct: 108 -----------------------------------PELPKPSISSNNSKPVEDKDAVAFT 132

Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639
            + +     + +W+ NN+ L  SP  R      N  L L    +  D   YK    N + 
Sbjct: 133 CEPETQD-ATYLWWVNNQSLPVSP--RLQLSNGNRTLTLFNV-TRNDTASYKCETQNPVS 188

Query: 640 SATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPP 699
           +                                       +S  V +   V   P     
Sbjct: 189 AR--------------------------------------RSDSVILN--VLYGPDAPTI 208

Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------- 740
            P     + GE+L +     + PP +  W VNGT    ++                    
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAH 268

Query: 741 -VKGKAE----------------FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSL 783
                                  FI   +   V++ +   L  E         W+ NN  
Sbjct: 269 NSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQS 328

Query: 784 I 784
           +
Sbjct: 329 L 329

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  265 bits (677), Expect = 2e-77
 Identities = 104/813 (12%), Positives = 217/813 (26%), Gaps = 213/813 (26%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P  S +   +  + N+ + +  R     + DL W +          V  ++ SD   + 
Sbjct: 31  LPRLSIQKDILTIKANTTLQITCR----GQRDLDWLWPNNQSGSEQRVEVTECSD-GLFC 85

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP-EKPSILEPLHDVSITEGES 130
             +TI  +   + G Y    +  +  + + + V+          S    +  ++  + ++
Sbjct: 86  KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKT 145

Query: 131 AVLSVQVGGEPSPKV--EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
            V+                Y + + + D    S  +    T+        G    +    
Sbjct: 146 VVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIN 205

Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
           + + +S   + V                  V+                    P H + ++
Sbjct: 206 DESYQSIMYIVV---------VVGYRIYDVVL-------------------SPSHGIELS 237

Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI-------------TSEKNTHTLTLIQC 295
            GE  VL+     E +  +++  +    K +                 +K   TLT+   
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGK--AEFIKKLDDLEVKERENAVLEVEVTSD 353
           +  D+G Y+   ++   T +++  + V +    A        +E    E   +  +    
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGY 357

Query: 354 -KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAE 408
              ++KW+K+G  ++++  +          L I  +S  D G YT      +  ++ S  
Sbjct: 358 PPPEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNYTVILTNPISKEKQSHV 412

Query: 409 LNV-VELPPEI---SVPLQDVKVSRDEKASFEIELTKGDA--LVKWYKDGKE-------- 454
           +++ V +PP+I   S+             +    +        + WY   +E        
Sbjct: 413 VSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQ 472

Query: 455 ------------------------IAFSENVTLSIDGK-KQKLIIFSAGLEDAGEYSCRV 489
                                   I  ++N    I+GK K    +       +  Y C  
Sbjct: 473 AVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEA 532

Query: 490 G-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP 548
               G  E   +  V                                             
Sbjct: 533 VNKVGRGERVISFHV--------------------------------------------- 547

Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----- 603
                        I    +    E+ ++ L      S   ++ W++     L        
Sbjct: 548 --------TRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELP 599

Query: 604 ---------------KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
                                  + +I+ELK A S  D GDY  +A +      H     
Sbjct: 600 TPVCKNLDTLWKLNATMFSNSTNDILIMELKNA-SLQDQGDYVCLAQDRKTKKRH----- 653

Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
                                                +      AP I            
Sbjct: 654 --------------------------------CVVRQLTVLERVAPTIT-GNLENQTTSI 680

Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
           GE +++       PPP+  W  +   +V    +
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  262 bits (671), Expect = 1e-76
 Identities = 110/742 (14%), Positives = 215/742 (28%), Gaps = 177/742 (23%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLL--WYYNGEPLQETDEVVFSDQSDMH 68
              +       +   +N  V +            L   Y     + + + + +  +    
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF- 185

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                 TI S      G+    AK  +   +  + + V  G      +L P H + ++ G
Sbjct: 186 ------TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 239

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-------------ITSEKNTHTLTLIQCST 175
           E  VL+     E +  +++  +    K +                 +K   TLT+   + 
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 299

Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEK 235
            D+G Y+   ++   T +++  + V                               KP  
Sbjct: 300 SDQGLYTCAASSGLMTKKNSTFVRV-----------------------------HEKPFV 330

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 295
                    V  T GE   +  +  G P P+++WYK+G  ++       K  H LT+++ 
Sbjct: 331 AFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEV 388

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVD-QGKAEFIKK---LDDLEVKERENAVLEVEVT 351
           S +D G Y+V +TN     + +  +++      +  +K         +      L   V 
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVY 448

Query: 352 SD--KADVKWFKDGQEIKTSKK---------------------------------VTIEK 376
           +      + W+   +E   ++                                    + +
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508

Query: 377 KGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEK 432
                   +   + +    Y C     +   E     +V    PEI++   D++ +  E 
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-GPEITLQ-PDMQPTEQES 566

Query: 433 ASFEIELTKGDAL-VKWYKDGKEIAFSENVTL--------------------SIDGKKQK 471
            S      +     + WYK G +        L                    +       
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626

Query: 472 LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
           + + +A L+D G+Y C   D    K       +                           
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV--------------------- 665

Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
                                      AP      E +T     +I +      +P P I
Sbjct: 666 ---------------------------APTITGNLENQTTSIGESIEVSCTASGNPPPQI 698

Query: 591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
           +WF++N+ L+       +    N  L ++    E D G Y   A + LG A   A   ++
Sbjct: 699 MWFKDNETLVEDS--GIVLKDGNRNLTIRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIE 755

Query: 651 VEKVGRPPINSIDIDRNHVHHL 672
               G       +++R H HH 
Sbjct: 756 ----GAQEK--TNLERTHHHHH 771

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  234 bits (597), Expect = 3e-66
 Identities = 94/790 (11%), Positives = 211/790 (26%), Gaps = 162/790 (20%)

Query: 76  IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
           ++S       ++  V           +         + P +      ++I    +  ++ 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSV-------SLDLPRLSIQKDILTIKANTTLQITC 53

Query: 136 QVGGEPSPKVEWYKDGKLIKDR----QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
           +  G+      W  +    + R    + +      TLT+ +    D G Y       +  
Sbjct: 54  R--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA 111

Query: 192 VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGE 251
                 +                 P                    S    +  ++  + +
Sbjct: 112 SVIYVYVQD------------YRSPF---------------IASVSDQHGVVYITENKNK 144

Query: 252 SAVLSVQVGGEPSPKV--EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 309
           + V+                Y + + + D    S  +    T+        G    +   
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKI 204

Query: 310 KEGTVESAANLNVDQGKAEF---IKKLDDLEVKERENAVLEVEVTSD---KADVKWFKDG 363
            + + +S   + V  G   +   +     +E+   E  VL     ++     D  W    
Sbjct: 205 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 264

Query: 364 QEIKTSKKVTIEKKGT--------IRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
            + +  K V  + K          +  L I  ++  D+G YTC     L  ++ S  + V
Sbjct: 265 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324

Query: 412 VELP--PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDG 467
            E P     S     V+ +  E+     +   G     +KWYK+G  +  +  +      
Sbjct: 325 HEKPFVAFGSGMESLVEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTIKAG--- 380

Query: 468 KKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV---EAPAVEFLTKLPSVTLVPHL 523
               L I      D G Y+  +      ++    +++     P +   + +  V    + 
Sbjct: 381 --HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG 438

Query: 524 GDATFQVELSS--PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
              T    + +  P   + W                   + +  EE   +    + +   
Sbjct: 439 TTQTLTCTVYAIPPPHHIHW-------------------YWQLEEECANEPSQAVSVTNP 479

Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
                  S+  F+    +  +  +  + +G+N  +      +   +  YK  A N++G  
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539

Query: 642 THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPP 701
                  V       P I                 + +   +   ++ V      D    
Sbjct: 540 ERVISFHVTR----GPEI-----------------TLQPDMQPTEQESVSLWCTADRSTF 578

Query: 702 PEVLVKKGEDLKIEVRFKALPPPKAE-----WTVNGTVIVPSK----------------- 739
             +   K     + +    LP P  +     W +N T+   S                  
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638

Query: 740 -----------------------RVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADV 775
                                    +        L++      E+  +    + +    +
Sbjct: 639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698

Query: 776 KWFKNNSLIK 785
            WFK+N  + 
Sbjct: 699 MWFKDNETLV 708

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  203 bits (518), Expect = 1e-55
 Identities = 76/481 (15%), Positives = 136/481 (28%), Gaps = 113/481 (23%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
                 S     V A     V +  + +  P P++ WY NG PL+    +          
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---------K 378

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN-TGKPEKPSILEPLHDVSITEG 128
              ++TI  + +R+ G YTV+  N   + K    V +     P+           S   G
Sbjct: 379 AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG 438

Query: 129 ESAVLSVQVGGEPSP-KVEWYKDGKLI--------------------------------- 154
            +  L+  V   P P  + WY   +                                   
Sbjct: 439 TTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE 498

Query: 155 ---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKET 211
                  +   KN    TL+  +      Y  +  NK G  E   + +V           
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV----------- 547

Query: 212 PPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK 271
             +  P +  +                     D+  TE ES  L           + WYK
Sbjct: 548 --TRGPEITLQP--------------------DMQPTEQESVSLWCTADRSTFENLTWYK 585

Query: 272 DGKLIKDRQIT-----------------------SEKNTHTLTLIQCSTKDKGRYSVKVT 308
            G       +                        S  +   + L   S +D+G Y     
Sbjct: 586 LGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645

Query: 309 NKEGTVESAANLNV---DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQ 364
           +++          +   ++        L++      E+  +    + +    + WFKD +
Sbjct: 646 DRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE 705

Query: 365 EIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISV 420
            +     + ++     R L IR +   DEG YTC     L   +  A   +     + ++
Sbjct: 706 TLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 763

Query: 421 P 421
            
Sbjct: 764 E 764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  154 bits (389), Expect = 5e-39
 Identities = 60/378 (15%), Positives = 113/378 (29%), Gaps = 90/378 (23%)

Query: 2   SSLADILEGIPPTFSKKT---KPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETD 57
           S +  ++  +PP   +K+        +  +  TL   + A+P P  + WY+  E     +
Sbjct: 410 SHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANE 469

Query: 58  EVVFSDQSDMH-----------------------------SYVSIVTIKSIKKREEGVYT 88
                  ++ +                                ++ T+         +Y 
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529

Query: 89  VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY 148
             A N+ G  +  I   V       P I     D+  TE ES  L           + WY
Sbjct: 530 CEAVNKVGRGERVISFHVT----RGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWY 584

Query: 149 KDGKLIKDRQIT-----------------------SEKNTHTLTLIQCSTKDKGRYSVKV 185
           K G       +                        S  +   + L   S +D+G Y    
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA 644

Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
            +++          +   E                               P+I   L + 
Sbjct: 645 QDRKTKKRHCVVRQLTVLE----------------------------RVAPTITGNLENQ 676

Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYS 304
           + + GES  +S    G P P++ W+KD + +  D  I  +     LT+ +   +D+G Y+
Sbjct: 677 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 736

Query: 305 VKVTNKEGTVESAANLNV 322
            +  +  G  +  A   +
Sbjct: 737 CQACSVLGCAKVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 78.6 bits (193), Expect = 4e-15
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 7   ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
           +LE + PT +   +         + +       P P ++W+ + E L E   +V  D + 
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN- 719

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
                  +TI+ ++K +EG+YT  A +  G AK++    +  G  EK ++
Sbjct: 720 -----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE-GAQEKTNL 763

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  219 bits (561), Expect = 5e-66
 Identities = 73/315 (23%), Positives = 124/315 (39%), Gaps = 45/315 (14%)

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 165
           G    P        V +  GES      V G    K+ W KD + I+   + ++T  +NT
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
            TLT+++ +  D G+Y+   +N  G    +A L V                         
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------------ 96

Query: 226 LQVNTGKPEKPSILEPLHDV-SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQI 281
                   E P  ++ L     + + E      ++GG P  KV WYKD   I+     ++
Sbjct: 97  --------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM 148

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKER 341
           +  ++   L +   S +D G Y+ +  N  G+  S+ +L V +    F KK   +E  + 
Sbjct: 149 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-KEPPVFRKKPHPVETLKG 207

Query: 342 ENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC-- 398
            +  LE E+       V W KD +E+++ KK  I  +  +  + I N+   D GEY C  
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267

Query: 399 --SLPDQETSAELNV 411
              +        + +
Sbjct: 268 SNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  216 bits (553), Expect = 7e-65
 Identities = 61/318 (19%), Positives = 115/318 (36%), Gaps = 47/318 (14%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP F  K   V        T +  +       + W  +   ++         +  +    
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY----KMTLVENT 60

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDV-SITEGES 130
           + +T+  + K + G YT  A N  G+      + V     E P  ++ L     + + E 
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVKQDEH 116

Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
                ++GG P  KV WYKD   I+     +++  ++   L +   S +D G Y+ +  N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176

Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
             G+  S+ +L V                                 E P   +  H V  
Sbjct: 177 AAGSASSSTSLKVK--------------------------------EPPVFRKKPHPVET 204

Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYS 304
            +G    L  ++ G P  +V W+KD + ++     +I SE    ++ ++   + D G Y 
Sbjct: 205 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 264

Query: 305 VKVTNKEGTVESAANLNV 322
            K +N  G+     ++ +
Sbjct: 265 CKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  213 bits (545), Expect = 9e-64
 Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 15/287 (5%)

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 287
           G    P        V +  GES      V G    K+ W KD + I+   + ++T  +NT
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVL 346
            TLT+++ +  D G+Y+   +N  G    +A L V Q    FIKKL+    VK+ E+   
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRY 119

Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLP 401
           E ++    +  V W+KD  EI+ S K  +    ++  L + N+SV D G+YTC    +  
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179

Query: 402 DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE 459
              +S  L V E PP        V+  +      E E  +G     V W+KD +E+   +
Sbjct: 180 SASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECE-LQGTPPFQVSWHKDKRELRSGK 237

Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
              +  +     + I +    D GEY C+   D G      ++T++A
Sbjct: 238 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  183 bits (465), Expect = 2e-52
 Identities = 68/331 (20%), Positives = 123/331 (37%), Gaps = 64/331 (19%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
            F  K   +++   E+   +  VT      + W KD +EI+      +        L + 
Sbjct: 7   FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVK-VSRDEKASFEIELTK 441
            ++  D G+YTC           SA+L V E PP     L+  + V +DE   +E ++  
Sbjct: 67  KVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIG- 124

Query: 442 GDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESK 498
           G     V WYKD  EI  S    +S       L +++  +ED+G+Y+C      G   S 
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184

Query: 499 ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA 558
            +L V+ P                                                    
Sbjct: 185 TSLKVKEP---------------------------------------------------- 192

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P+F ++       +   + L  +++ +P   + W ++ + L S  K + + +     + +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 252

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
              DS  D G+Y+  A+N++GS T    +T+
Sbjct: 253 LNVDSA-DIGEYQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  141 bits (358), Expect = 9e-38
 Identities = 67/332 (20%), Positives = 105/332 (31%), Gaps = 100/332 (30%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
           PP   +    V ++  E  +F+  +T G A   + W KD +EI    N  +++      L
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63

Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
            +      DAG+Y+C      G     A L V+ P                         
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------------------------- 98

Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE-EKTVKEKGTIRLMAKVKASPAPSI 590
                                      P FI++ E  + VK+    R   K+  SP   +
Sbjct: 99  ---------------------------PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131

Query: 591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
           +W+++   +  S K R  F     +LE+    S  D+GDY   A N  GSA+    + V 
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASSSTSLKVK 190

Query: 651 VEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGE 710
                                                      PV    P P V   KG 
Sbjct: 191 E-----------------------------------------PPVFRKKPHP-VETLKGA 208

Query: 711 DLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
           D+ +E   +  PP +  W  +   +   K+ K
Sbjct: 209 DVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  115 bits (289), Expect = 1e-28
 Identities = 40/272 (14%), Positives = 68/272 (25%), Gaps = 86/272 (31%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
            P F  +     +    +      V  +    I W ++N+ +      +         L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
           + +     DAG Y   A+N  G  +  A++ V                            
Sbjct: 65  VLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQE-------------------------- 97

Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVP 737
                           P       P  +VK+ E  + E +    P  K  W  + T I  
Sbjct: 98  ---------------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142

Query: 738 SKR-------------------------------------------VKGKAEFIKKLDDL 754
           S +                                           VK    F KK   +
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202

Query: 755 EVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
           E  +  +  LE E+       V W K+   ++
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELR 234

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  218 bits (557), Expect = 6e-64
 Identities = 79/414 (19%), Positives = 136/414 (32%), Gaps = 45/414 (10%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
              F  +           V L     +    P + W  +G  L    +       +    
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
           +  +      K +EG+Y   A   +  + +    KV    P     L     ++   G++
Sbjct: 81  IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP--LRFLSQTESITAFMGDT 138

Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
            +L  +V G+P P + W K+ + +     D ++    +   L + +    D G Y     
Sbjct: 139 VLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS-GALQISRLQPGDSGVYRCSAR 197

Query: 187 NKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
           N   T     A + +           P                          L+   +V
Sbjct: 198 NPASTRTGNEAEVRI--------LSDPGLHRQ------------------LYFLQRPSNV 231

Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYS 304
              EG+ AVL   V G P P   W +  ++I+   +  S      L +   +  D G Y+
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291

Query: 305 VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDG 363
             VT K   + ++A L V      F+    +L   E  +   E  V+      V W K+G
Sbjct: 292 CVVTYKNENISASAELTV-LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350

Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
             +  S    I        L I  +   DEG Y C       + ++SA+L V +
Sbjct: 351 DVVIPSDYFQIVGGSN---LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  217 bits (554), Expect = 1e-63
 Identities = 81/444 (18%), Positives = 147/444 (33%), Gaps = 70/444 (15%)

Query: 91  AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYK 149
             +    +                  +    D     G + +L+         P ++W K
Sbjct: 3   WGSELESSHHHHHHGG----RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58

Query: 150 DGKLIK----DRQITSEKNT---HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP 202
           DG ++     DR+      +     +   +    D+G Y  + +  +             
Sbjct: 59  DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS---------- 108

Query: 203 YEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 262
                           ++S    + V          L     ++   G++ +L  +V G+
Sbjct: 109 ----------------IISRTAKVMVA----GPLRFLSQTESITAFMGDTVLLKCEVIGD 148

Query: 263 PSPKVEWYKDGKLIK----DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA- 317
           P P + W K+ + +     D ++    +   L + +    D G Y     N   T     
Sbjct: 149 PMPTIHWQKNQQDLNPIPGDSRVVVLPS-GALQISRLQPGDSGVYRCSARNPASTRTGNE 207

Query: 318 ANLNV-----DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIK-TSK 370
           A + +        +  F+++  ++   E ++AVLE  V+        W +  + I+  SK
Sbjct: 208 AEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK 267

Query: 371 KVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVK 426
           K ++        LLI N++  D G YTC       +   SAEL V+  PP       ++ 
Sbjct: 268 KYSLLGGSN---LLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-PPWFLNHPSNLY 323

Query: 427 VSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGE 484
                   FE     G     V W K+G  +  S+   +        L I      D G 
Sbjct: 324 AYESMDIEFECA-VSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGF 379

Query: 485 YSCRVG-DTGDKESKATLTVEAPA 507
           Y C    + G+ +S A L V  PA
Sbjct: 380 YQCVAENEAGNAQSSAQLIVPKPA 403

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  194 bits (495), Expect = 3e-55
 Identities = 78/444 (17%), Positives = 140/444 (31%), Gaps = 90/444 (20%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK----DRQITSEKNT 287
                 +    D     G + +L+         P ++W KDG ++     DR+      +
Sbjct: 19  RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS 78

Query: 288 ---HTLTLIQCSTKDKGRYSVKVTNKEG--TVESAANLNVDQGKAEFIKKLDDLEVKERE 342
                +   +    D+G Y  + +  +    +   A + V  G   F+ + + +     +
Sbjct: 79  LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV-AGPLRFLSQTESITAFMGD 137

Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKT---SKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
             +L+ EV  D    + W K+ Q++       +V +   G    L I  +   D G Y C
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQISRLQPGDSGVYRC 194

Query: 399 SL-----PDQETSAELNVVELP-----PEISVPLQDVKVSRDEKASFEIELTKGD--ALV 446
           S            AE+ ++  P             +V     + A  E     G      
Sbjct: 195 SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC-VSGYPPPSF 253

Query: 447 KWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
            W +  + I         + G    L+I +   +D+G Y+C V     +  + A LTV  
Sbjct: 254 TWLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311

Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
           P                                                    P F+   
Sbjct: 312 P----------------------------------------------------PWFLNHP 319

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
                 E   I     V   P P++ W +N   ++ S   + +      IL +     ++
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGV----VKS 375

Query: 626 DAGDYKVVATNELGSATHGARVTV 649
           D G Y+ VA NE G+A   A++ V
Sbjct: 376 DEGFYQCVAENEAGNAQSSAQLIV 399

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  150 bits (381), Expect = 1e-39
 Identities = 73/454 (16%), Positives = 130/454 (28%), Gaps = 116/454 (25%)

Query: 308 TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQE 365
            ++  +     +    +    F+ +  D       N +L     SD+    +KW KDG  
Sbjct: 4   GSELESSHHHHHHGGRR-SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62

Query: 366 IKTSK--KVTIEKKGT--IRKLLIRNISVHDEGEYTC------SLPDQETSAELNVVELP 415
           +      +      G+  I+ +L       DEG Y C      S      +A++ V   P
Sbjct: 63  LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG-P 121

Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN---VTLSIDGKKQ 470
                  + +     +    + E+  GD    + W K+ +++        V +   G   
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVI-GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178

Query: 471 KLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
            L I      D+G Y C      +    ++A + + +                       
Sbjct: 179 -LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD---------------------- 215

Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
                                       +   F++R       E     L   V   P P
Sbjct: 216 ------------------------PGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP 251

Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
           S  W R  + +    KK  +  G N  L +    ++ D+G Y  V T +  + +  A +T
Sbjct: 252 SFTWLRGEEVIQLRSKKYSLLGGSN--LLISNV-TDDDSGTYTCVVTYKNENISASAELT 308

Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
           V V                                          P      P  +   +
Sbjct: 309 VLV-----------------------------------------PPWFL-NHPSNLYAYE 326

Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
             D++ E      P P   W  NG V++PS   +
Sbjct: 327 SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ 360

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  121 bits (306), Expect = 8e-30
 Identities = 68/446 (15%), Positives = 109/446 (24%), Gaps = 150/446 (33%)

Query: 396 YTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGK 453
           +   L                       D    R          E  +G  ++KW KDG 
Sbjct: 3   WGSELESSHHHHHHGG-RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61

Query: 454 EIAFSENV--------TLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTGDKES-KATLT 502
            +A   +         +L I    Q ++       D G Y C   +GD+G   S  A + 
Sbjct: 62  ILALGMDDRKQQLPNGSLLI----QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM 117

Query: 503 VEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI 562
           V  P                                                      F+
Sbjct: 118 VAGP----------------------------------------------------LRFL 125

Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 622
            + E  T     T+ L  +V   P P+I W +N + L   P    +    +  L++    
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185

Query: 623 SETDAGDYKVVATNELGS-ATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQS 681
              D+G Y+  A N   +   + A V +                                
Sbjct: 186 PG-DSGVYRCSARNPASTRTGNEAEVRI-------------------------------- 212

Query: 682 TEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR- 740
               +  P     +     P  V+  +G+D  +E      PPP   W     VI    + 
Sbjct: 213 ----LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK 268

Query: 741 ----------------------------------------VKGKAEFIKKLDDLEVKERE 760
                                                   V     F+    +L   E  
Sbjct: 269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESM 328

Query: 761 NAVLEVEVTSD-KADVKWFKNNSLIK 785
           +   E  V+      V W KN  ++ 
Sbjct: 329 DIEFECAVSGKPVPTVNWMKNGDVVI 354

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  192 bits (489), Expect = 2e-55
 Identities = 63/329 (19%), Positives = 120/329 (36%), Gaps = 34/329 (10%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDM 67
               P F +            V L+ ++  +  E  ++WY +   +   ++  F D    
Sbjct: 4   PFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---- 58

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGK-------PEKPSILEPL 120
              +  + I    K++ G+Y V+ K+  G+ K  + +     K        +       L
Sbjct: 59  --GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL 116

Query: 121 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKD 177
              S  EG   + S         KV W  +G  I+     +         L + + +  D
Sbjct: 117 KIQSTAEG-IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPND 175

Query: 178 KGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS 237
           KG+Y +++ + +   +   +L+   Y+   ++                      K     
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE-----------KNRARV 224

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN-THTLTLI 293
           +      V+I EG++  L+  V G+P P+V W K+ K +       +  E   T   T+ 
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             ST D G+Y + V NK G+  S   ++V
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  179 bits (456), Expect = 7e-51
 Identities = 59/314 (18%), Positives = 109/314 (34%), Gaps = 44/314 (14%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLT 291
             P  +E L    +T   + +L  +V   +    + WYKD + I  D +   +    TL 
Sbjct: 6   TGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 64

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT 351
           + + S KD G Y V + +  G  +S   L   +   E + ++         +  ++    
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTAE 123

Query: 352 -----------SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
                       +   V W  +G  I+ S +V     G    L I   + +D+G+Y   L
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183

Query: 401 PDQ----ETSAELNV--------------------VELPPEISVPLQDVKVSRDEKASFE 436
            D     + + +L+                           +      V +   +  +  
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 243

Query: 437 IELTKGD--ALVKWYKDGKEIAFSENVTLSID-GKKQKLIIFSAGLEDAGEYSCRVG-DT 492
             +  GD    V W K+ K +A  ++  L  + G+     I      D+G+Y   V    
Sbjct: 244 CNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 302

Query: 493 GDKESKATLTVEAP 506
           G + S  T++V  P
Sbjct: 303 GSETSDFTVSVFIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  176 bits (447), Expect = 1e-49
 Identities = 66/344 (19%), Positives = 115/344 (33%), Gaps = 57/344 (16%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
            F++ L   EV    N +L+ +V + K    + W+KD +EI   +K   +       LLI
Sbjct: 9   HFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT--LLI 65

Query: 386 RNISVHDEGEYTCSLPDQ----ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
              S  D G Y   L D     ++  +L       E+ + +             +    +
Sbjct: 66  TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQST-AE 123

Query: 442 GDAL------------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
           G  L            V W  +G  I +S+ V   + G++  L I      D G+Y   +
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183

Query: 490 GDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP 548
            D     +    L+ +A    +                                    + 
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYA-------------------------------EFQRLK 212

Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 608
              +    +A +     +  T++E   + L   V   P P + W +N K L S       
Sbjct: 213 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLK 272

Query: 609 FD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           F+ G      +    +  D+G Y +V  N+ GS T    V+V +
Sbjct: 273 FEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  131 bits (332), Expect = 5e-34
 Identities = 50/334 (14%), Positives = 88/334 (26%), Gaps = 70/334 (20%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
               P     L   +V+ +     + ++        + WYKD +EI+  E          
Sbjct: 4   PFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGI 60

Query: 470 QKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
             L+I     +DAG Y   + D  G  +S+  L  EA     +     + L     D   
Sbjct: 61  CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSAT--DLKI 118

Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
           Q                                           +G              
Sbjct: 119 QST----------------------------------------AEGIQLYSFVTYYVEDL 138

Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
            + W  N   +  S + +    GE I L++ E  +  D G Y +   +          ++
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLS 197

Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
                                   D   +  Q  +         A V+    P  V +++
Sbjct: 198 GQA--------------------YDEAYAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQE 236

Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
           G+ L +       PPP+  W  N   +       
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  129 bits (326), Expect = 3e-33
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 37/235 (15%)

Query: 2   SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVR----------LVAVPEPDLLWYYNGE 51
            S   +++        +     A   +++ ++               V +  + W +NG 
Sbjct: 88  KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS 147

Query: 52  PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN---- 107
            ++ +D V      +         I      ++G Y +   + +   +  + +       
Sbjct: 148 AIRYSDRVKTGVTGEQIWL----QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDE 203

Query: 108 -------------TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI 154
                          K     +      V+I EG++  L+  V G+P P+V W K+ K +
Sbjct: 204 AYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 263

Query: 155 KD---RQITSEKN-THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
                  +  E   T   T+   ST D G+Y + V NK G+  S   ++V  + P
Sbjct: 264 ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIP 316

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 42/275 (15%), Positives = 80/275 (29%), Gaps = 58/275 (21%)

Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGEN 613
           P   P F+E +    V  +  + L  KV        IVW+++ + +  S  ++  F    
Sbjct: 4   PFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGI 60

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
             L + E   + DAG Y+V+  ++ G      ++  +  K     +              
Sbjct: 61  CTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSA------ 113

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL-VKKGEDLKIEVRFKALPPP-------- 724
                    +   E     + V       +V     G  ++   R K             
Sbjct: 114 ----TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQIN 169

Query: 725 -------------------KAEWTVNGTVIV-------------PSKRVKGKAEFIKKL- 751
                                + TV+ +                 +   K +A  +  L 
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229

Query: 752 DDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
           D + ++E +   L   V  D   +V W KN   + 
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA 264

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  189 bits (480), Expect = 3e-54
 Identities = 67/333 (20%), Positives = 108/333 (32%), Gaps = 57/333 (17%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 168
             P   E + +V      S          P  +  W KD    +D    ++ S+ N   +
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
           T       D G YS  VT+ +G   S      +             P   V SEL     
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL----- 115

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD-----RQIT 282
                           V I E       +Q      + KV +  + K I +       I 
Sbjct: 116 ---------------AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHID 160

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--------------- 327
                  + + +   +D+G Y+ ++ + + T  S   L  D  K                
Sbjct: 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 220

Query: 328 ---EFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRK 382
               F++ L   EV    N +L+ +V + K +  + W+KD +EI   +K   +    I  
Sbjct: 221 QGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICT 277

Query: 383 LLIRNISVHDEGEYTCSLPDQ----ETSAELNV 411
           LLI   S  D G Y   L D     ++  +L  
Sbjct: 278 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  187 bits (477), Expect = 7e-54
 Identities = 64/315 (20%), Positives = 108/315 (34%), Gaps = 47/315 (14%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 290
             P   E + +V      S          P  +  W KD    +D    ++ S+ N   +
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV-----------DQGKAEFIKKLDDLEVK 339
           T       D G YS  VT+ +G   S                  +     +K    +E+ 
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120

Query: 340 ERENAVL--EVEVTSDKADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLIRNISVHDEGE 395
           E+       + E  S  A V +  + +EI      K+ I++   I ++ +  +   DEG 
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180

Query: 396 YTCSLPDQETSAELNVVEL----------------------PPEISVPLQDVKVSRDEKA 433
           YT  L D + +    VV +                       P     L   +V+ +   
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW-EVTGECNV 239

Query: 434 SFEIELT--KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491
             + ++   K +  + WYKD +EI+  E            L+I     +DAG Y   + D
Sbjct: 240 LLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKD 297

Query: 492 T-GDKESKATLTVEA 505
             G  +S+  L  EA
Sbjct: 298 DRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  187 bits (475), Expect = 2e-53
 Identities = 52/330 (15%), Positives = 115/330 (34%), Gaps = 35/330 (10%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
           GI P   +    V  +    +  E      P+ +  W  +    +++  +    + +   
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEA--------KMDIPVKVNTGKPEKPSILEPLH 121
               +T K +   + G+Y+    + +G A        ++   + ++         ++   
Sbjct: 60  ----MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115

Query: 122 DVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTLTLIQCST 175
            V I E       +Q      + KV +  + K I +       I        + + +   
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175

Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEK 235
           +D+G Y+ ++ + + T  S   L  D ++  + +                      + + 
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEW-------------IRKQG 222

Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLI 293
           P  +E L    +T   + +L  +V   +    + WYKD + I  D +   +    TL + 
Sbjct: 223 PHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 281

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           + S KD G Y V + +  G  +S   L  +
Sbjct: 282 EFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  174 bits (443), Expect = 4e-49
 Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 56/342 (16%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
             + + +++     +   E +  + K++  W KD    + S ++ +E KG   K+  +++
Sbjct: 6   TKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDL 65

Query: 389 SVHDEGEYTCSLPDQETSAELNVV---------------ELPPEISVPLQDVKVSRDEKA 433
            + D G Y+C + D +  A   ++               + P         V++    + 
Sbjct: 66  GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQV 125

Query: 434 SFEIELTKG--DALVKWYKDGKEIAFSENVTLSIDGKK--QKLIIFSAGLEDAGEYSCRV 489
            F ++  K   +A V +  + KEI       + ID      ++ +     ED G Y+ ++
Sbjct: 126 RFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 185

Query: 490 GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT 549
               D ++    TV      F                                       
Sbjct: 186 ---QDGKATNHSTVVLVGDVFKKLQKEAEFQR---------------------------- 214

Query: 550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREI 608
                  Q P F+E +    V  +  + L  KV        IVW+++ + +    K    
Sbjct: 215 -QEWIRKQGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD-- 270

Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
           F      L + E   + DAG Y+V+  ++ G      ++  +
Sbjct: 271 FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  138 bits (350), Expect = 2e-36
 Identities = 47/332 (14%), Positives = 88/332 (26%), Gaps = 66/332 (19%)

Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
           + P     + +V        +FE +     +   W KD      S  + +   G K K+ 
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
               G++D G YSC V DT    S   +  E                             
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE------------------ 103

Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVW 592
                                     + ++      + EKG +R   +  K S    + +
Sbjct: 104 ---------------------HKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142

Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
             N K +   PK +   D    I+E+      + D G Y     +   +      +  DV
Sbjct: 143 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDV 202

Query: 652 EKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGED 711
            K                         +++     E   +  P        E  V    +
Sbjct: 203 FK----------------------KLQKEAEFQRQEWIRKQGPHFVEYLSWE--VTGECN 238

Query: 712 LKIEVRFKALPPP-KAEWTVNGTVIVPSKRVK 742
           + ++ +   +       W  +   I   ++  
Sbjct: 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHD 270

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 79.7 bits (196), Expect = 3e-16
 Identities = 39/274 (14%), Positives = 75/274 (27%), Gaps = 54/274 (19%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           G  P   E           ++        +P     W ++      SP+      G    
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
           +  K+   + D G Y    T+  G A+      +D E++ R    S +     V     +
Sbjct: 60  MTFKDLGMD-DLGIYSCDVTDTDGIAS---SYLIDEEELKRLLALSHEHKFPTV----PV 111

Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEV-LVKKGEDLKIEVRFKALPPP---------- 724
            S      ++  +              +V  +   +++    ++K               
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171

Query: 725 -------------------KAEWTVNGTVIVPSKR------------VKGKAEFIKKLDD 753
                                  TV     V  K              K    F++ L  
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231

Query: 754 LEVKERENAVLEVEVTSDKAD--VKWFKNNSLIK 785
            EV    N +L+ +V + K +  + W+K+   I 
Sbjct: 232 -EVTGECNVLLKCKVANIKKETHIVWYKDEREIS 264

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  190 bits (484), Expect = 9e-54
 Identities = 74/415 (17%), Positives = 139/415 (33%), Gaps = 38/415 (9%)

Query: 12  PPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           PPT +K+  K    +    + +E      P P   W  N        +   S +    + 
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
           V         +  EG Y   A+N+ G A  +  +++   K       E L  V + EG  
Sbjct: 76  VIDFRSGGRPEEYEGEYQCFARNKFGTALSN-RIRLQVSKSPL-WPKENLDPVVVQEGAP 133

Query: 131 AVLSVQV-GGEPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKD-KGRYSVKVT 186
             L      G PSP + W       + +D++++   N   L       +D +  YS    
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN-GDLYFSNVMLQDMQTDYSCNAR 192

Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
                                         P+ +  L T  V    P             
Sbjct: 193 FHFTHTIQ-------------------QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM 233

Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
           +  G   +L     G P+P + WYK G  +   +   E     L +   S +D G Y   
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCL 293

Query: 307 VTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQE 365
            +NK G++    ++ V +    ++ +  +L +   E+  L      + K  V+W  +G+ 
Sbjct: 294 ASNKMGSIRHTISVRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP 352

Query: 366 IKTSK--KVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVEL 414
           ++++           T   ++ R+  +     Y C           +A ++V+++
Sbjct: 353 LQSAPPNPNREVAGDT---IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDV 404

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  180 bits (458), Expect = 4e-50
 Identities = 83/451 (18%), Positives = 149/451 (33%), Gaps = 97/451 (21%)

Query: 233 PEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTH 288
            + P+I  +   D  +   ++ ++  +  G P+P   W ++ +     KD +++  + + 
Sbjct: 14  TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG 73

Query: 289 TLTLIQCST----KDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKEREN 343
           TL +   S     + +G Y     NK GT  S    L V +      + LD + V+E   
Sbjct: 74  TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAP 133

Query: 344 AVLEVEVTSD--KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLIRNISVHD-EGEYTC- 398
             L+           + W     E  T  K+V+    G    L   N+ + D + +Y+C 
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD---LYFSNVMLQDMQTDYSCN 190

Query: 399 ------SLPDQETSAELNV------VELPPEISVP---LQDVKVSRDEKASFEIELTKGD 443
                     Q+    L V       E  P    P        V R      E   + G 
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS-GV 249

Query: 444 AL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKAT 500
               + WYK G ++   +    + +     L I +   ED+GEY C      G      +
Sbjct: 250 PTPDIAWYKKGGDLPSDKAKFENFNKA---LRITNVSEEDSGEYFCLASNKMGSIRHTIS 306

Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
           + V+A                                                     P 
Sbjct: 307 VRVKAA----------------------------------------------------PY 314

Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILEL 618
           +++  +   +      RL+ +   +P P++ W  N +PL S+P    RE+     I  + 
Sbjct: 315 WLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT 374

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
           + +        Y+   +NE G     A V+V
Sbjct: 375 QISSR----AVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  178 bits (452), Expect = 3e-49
 Identities = 77/440 (17%), Positives = 146/440 (33%), Gaps = 75/440 (17%)

Query: 100 MDIPVK--VNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-- 154
           ++IP+   +     + P+I  +   D  +   ++ ++  +  G P+P   W ++ +    
Sbjct: 1   IEIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60

Query: 155 -KDRQITSEKNTHTLTLIQCST----KDKGRYSVKVTNKEGTVES-AANLNVDPYEPKES 208
            KD +++  + + TL +   S     + +G Y     NK GT  S    L V        
Sbjct: 61  AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV-------- 112

Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKV 267
                S  P    E                   L  V + EG    L      G PSP +
Sbjct: 113 -----SKSPLWPKE------------------NLDPVVVQEGAPLTLQCNPPPGLPSPVI 149

Query: 268 EWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKD-KGRYSVKVTNKEG---------TVE 315
            W       + +D++++   N   L       +D +  YS                 T++
Sbjct: 150 FWMSSSMEPITQDKRVSQGHN-GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208

Query: 316 SAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK 371
                 V +    F+          V    + +LE   +     D+ W+K G ++ + K 
Sbjct: 209 VLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA 268

Query: 372 VTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKV 427
                      L I N+S  D GEY C     +     +  + V    P      +++ +
Sbjct: 269 KFENFNKA---LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-APYWLDEPKNLIL 324

Query: 428 SRDEKASFEIELTKGD--ALVKWYKDGKEI-AFSENVTLSIDGKKQKLIIFSAGLEDAGE 484
           +  E          G+    V+W  +G+ + +   N    + G    +I     +     
Sbjct: 325 APGEDGRLVCR-ANGNPKPTVQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQISSRAV 381

Query: 485 YSCRVG-DTGDKESKATLTV 503
           Y C    + G   + A ++V
Sbjct: 382 YQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  131 bits (330), Expect = 5e-33
 Identities = 78/446 (17%), Positives = 130/446 (29%), Gaps = 109/446 (24%)

Query: 313 TVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK 371
            ++ +    + Q      +   D  V  R+N ++E E   +      W ++ +    +K 
Sbjct: 4   PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63

Query: 372 VTIEKKGTIRKLLIRNISVH----DEGEYTCSL-----PDQETSAELNVVELPPEISVPL 422
             +  +     L+I   S       EGEY C               L V + P      L
Sbjct: 64  PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENL 123

Query: 423 QDVKVSRDEKASFEIELTKG--DALVKWYKDGKE-IAFSENVTLSIDGKKQKLIIFSAGL 479
             V V      + +     G    ++ W     E I   + V+   +G    L   +  L
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD---LYFSNVML 180

Query: 480 EDA-GEYSC----RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
           +D   +YSC        T  +++  TL V                               
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPS------------------- 221

Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
                     F+ P                   + V     + L       P P I W++
Sbjct: 222 ----------FMYPQ-------------GTASSQMVLRGMDLLLECIASGVPTPDIAWYK 258

Query: 595 NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 654
               L S   K E F+     L +    SE D+G+Y  +A+N++GS  H   V       
Sbjct: 259 KGGDLPSDKAKFENFNK---ALRITNV-SEEDSGEYFCLASNKMGSIRHTISVR------ 308

Query: 655 GRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKI 714
                                              V+ AP      P  +++  GED ++
Sbjct: 309 -----------------------------------VKAAPYWL-DEPKNLILAPGEDGRL 332

Query: 715 EVRFKALPPPKAEWTVNGTVIVPSKR 740
             R    P P  +W VNG  +  +  
Sbjct: 333 VCRANGNPKPTVQWMVNGEPLQSAPP 358

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 95.7 bits (238), Expect = 4e-21
 Identities = 58/434 (13%), Positives = 105/434 (24%), Gaps = 137/434 (31%)

Query: 404 ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENV 461
           + S +  + + P       +D  V   +    E E  KG+      W ++ +    +++ 
Sbjct: 6   DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECE-AKGNPAPSFHWTRNSRFFNIAKDP 64

Query: 462 TLSIDGKKQKLIIF----SAGLEDAGEYSCRV-GDTGDKES-KATLTVEAPAVEFLTKLP 515
            +S+  +   L+I         E  GEY C      G   S +  L V            
Sbjct: 65  RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS--------- 115

Query: 516 SVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK-TVKEKG 574
                                                      PL+ +   +   V+E  
Sbjct: 116 -------------------------------------------PLWPKENLDPVVVQEGA 132

Query: 575 TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 633
            + L        P+P I W  ++   ++  K+       +  L       +    DY   
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD--LYFSNVMLQDMQTDYSCN 190

Query: 634 ATNELGSAT-HGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVET 692
           A              T+ V                                     P   
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVA---------------------------ERTPSFM 223

Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------ 740
            P          +V +G DL +E     +P P   W   G  +   K             
Sbjct: 224 YP---QGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280

Query: 741 ----------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD- 771
                                       VK    ++ +  +L +   E+  L      + 
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP 340

Query: 772 KADVKWFKNNSLIK 785
           K  V+W  N   ++
Sbjct: 341 KPTVQWMVNGEPLQ 354

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  187 bits (477), Expect = 5e-53
 Identities = 84/415 (20%), Positives = 146/415 (35%), Gaps = 47/415 (11%)

Query: 10  GIPPTFSKKTKPVYAEENSE---VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
           G  P F ++   V    +SE   V L   +   P+P + W  NG  +    +  +S    
Sbjct: 3   GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
                S++     K ++ G Y  +A N  G        K+     E          VS+ 
Sbjct: 63  -----SLLINNPNKTQDAGTYQCIATNSFGTIVSR-EAKLQFAYLENFKT-RTRSTVSVR 115

Query: 127 EGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSV 183
            G+  VL              W  +       +R+  S++    L + +    D G Y+ 
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET-GNLYIAKVEKSDVGNYTC 174

Query: 184 KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH 243
            VTN     +                      PP  +   +   +   +P     ++   
Sbjct: 175 VVTNTVTNHKVLG-------------------PPTPLILRNDGVMGEYEP--KIEVQFPE 213

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 302
            V   +G +  L     G P P + W + DGK I  +    + N   L +     +D G 
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-GILEIPNFQQEDAGS 272

Query: 303 YSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFK 361
           Y     N  G   +   L     +  +++ ++D+ V   E+   E +     K   +W K
Sbjct: 273 YECVAENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK 331

Query: 362 DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
           +G  + T  ++ IE +GT   L I  +++ D G Y C          +SAEL+V+
Sbjct: 332 NGDPLLTRDRIQIE-QGT---LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  175 bits (446), Expect = 1e-48
 Identities = 85/448 (18%), Positives = 142/448 (31%), Gaps = 96/448 (21%)

Query: 231 GKPEKPSILEPLHDVSI---TEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITS 283
           G    P  ++    V     +E +   LS +V G P P + W  +G  +      R    
Sbjct: 1   GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERE 342
           + +       +  T+D G Y    TN  GT+ S  A L     +    +    + V+  +
Sbjct: 61  DGSLLINNPNK--TQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ 118

Query: 343 NAVLEVEVTSD--KADVKWFKDGQEIKT-SKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
             VL         +    W  +       +++   ++ G    L I  +   D G YTC 
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCV 175

Query: 400 -----LPDQETSAELNVV--------ELPPEISV-PLQDVKVSRDEKASFEIELTKGDAL 445
                   +       ++        E  P+I V   + V   +      E     G+ +
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL-GNPV 234

Query: 446 --VKWYK-DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATL 501
             + W + DGK IA       S       L I +   EDAG Y C      G   +K  L
Sbjct: 235 PTILWRRADGKPIARKARRHKS----NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290

Query: 502 TVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF 561
           T  A                                                     P +
Sbjct: 291 TFYAQ----------------------------------------------------PNW 298

Query: 562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 621
           ++   +  V  + ++    K    P P+  W +N  PLL+   + +I  G   I  +  +
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD-RIQIEQGTLNITIVNLS 357

Query: 622 DSETDAGDYKVVATNELGSATHGARVTV 649
           D+    G Y+ VA N+ G     A ++V
Sbjct: 358 DA----GMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  172 bits (438), Expect = 1e-47
 Identities = 77/426 (18%), Positives = 129/426 (30%), Gaps = 72/426 (16%)

Query: 109 GKPEKPSILEPLHDVSI---TEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITS 161
           G    P  ++    V     +E +   LS +V G P P + W  +G  +      R    
Sbjct: 1   GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60

Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVV 220
           + +       +  T+D G Y    TN  GT+ S  A L                   +  
Sbjct: 61  DGSLLINNPNK--TQDAGTYQCIATNSFGTIVSREAKLQF------------AYLENFKT 106

Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-- 277
                                   VS+  G+  VL              W  +       
Sbjct: 107 -------------------RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD 147

Query: 278 DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN---LNVDQGKAE------ 328
           +R+  S++    L + +    D G Y+  VTN     +       L +            
Sbjct: 148 NRRFVSQET-GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPK 206

Query: 329 -FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
             ++  + +  ++     LE     +    + W +   +    K    +  G    L I 
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI---LEIP 263

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG 442
           N    D G Y C    S        +L      P     + D+ V+ +E   +E +   G
Sbjct: 264 NFQQEDAGSYECVAENSRGKNVAKGQLTFYA-QPNWVQIINDIHVAMEESVFWECK-ANG 321

Query: 443 D--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKA 499
                 +W K+G  +   + + +     +  L I    L DAG Y C      G   S A
Sbjct: 322 RPKPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSA 377

Query: 500 TLTVEA 505
            L+V A
Sbjct: 378 ELSVIA 383

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  156 bits (395), Expect = 8e-42
 Identities = 59/324 (18%), Positives = 103/324 (31%), Gaps = 49/324 (15%)

Query: 8   LEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSD 66
              +    ++    V       + L         E    W +N  P  + +    S ++ 
Sbjct: 98  FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET- 156

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEA---KMDIPVKVNT----GKPEKPSILEP 119
                  + I  ++K + G YT V  N            P+ +      G+ E    ++ 
Sbjct: 157 -----GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF 211

Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDK 178
              V   +G +  L     G P P + W + DGK I  +    + N   L +     +D 
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-GILEIPNFQQEDA 270

Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
           G Y     N  G   +   L                                    +P+ 
Sbjct: 271 GSYECVAENSRGKNVAKGQLTFY--------------------------------AQPNW 298

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
           ++ ++D+ +   ES     +  G P P   W K+G  +  R     +   TL +   +  
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLNITIVNLS 357

Query: 299 DKGRYSVKVTNKEGTVESAANLNV 322
           D G Y     NK G + S+A L+V
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  135 bits (341), Expect = 1e-34
 Identities = 68/428 (15%), Positives = 123/428 (28%), Gaps = 106/428 (24%)

Query: 329 FIKKLDDLEVK---ERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKV-TIEKKGTIRKL 383
           F+++   +      E +   L  EV  + K  ++W  +G ++            G+   L
Sbjct: 8   FVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS---L 64

Query: 384 LIRNIS-VHDEGEYTCSLPDQE-----TSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
           LI N +   D G Y C   +         A+L    L    +     V V R +      
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124

Query: 438 ELTKG--DALVKWYKDGKEIAF-SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGD 494
                  +    W  +       +        G    L I      D G Y+C V     
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCVV----- 176

Query: 495 KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS 554
             +  T                              ++  P   +      I+    +  
Sbjct: 177 -TNTVT----------------------------NHKVLGPPTPL------ILRNDGVMG 201

Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
             +  + ++  E    ++  T++L      +P P+I+W R +   ++   +R   +G   
Sbjct: 202 EYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG--- 258

Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
           ILE+     E DAG Y+ VA N  G      ++T                          
Sbjct: 259 ILEIPNFQQE-DAGSYECVAENSRGKNVAKGQLT-------------------------- 291

Query: 675 IDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
                              P        ++ V   E +  E +    P P   W  NG  
Sbjct: 292 ---------------FYAQPNWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335

Query: 735 IVPSKRVK 742
           ++   R++
Sbjct: 336 LLTRDRIQ 343

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 64/421 (15%), Positives = 111/421 (26%), Gaps = 140/421 (33%)

Query: 415 PPEISVPLQDVKV---SRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGK 468
            P        V     S ++K     E  KG+    ++W  +G ++    +   S+ DG 
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCE-VKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63

Query: 469 KQKLIIFSAG-LEDAGEYSCRV-GDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGD 525
              L+I +    +DAG Y C      G   S +A L        F T+  S         
Sbjct: 64  ---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-NFKTRTRSTV------- 112

Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
                                                      +V+    + L+      
Sbjct: 113 -------------------------------------------SVRRGQGMVLLCGPPPH 129

Query: 586 -PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
               S  W  N  P     ++    +  N  L + +   ++D G+Y  V TN + +    
Sbjct: 130 SGELSYAWIFNEYPSYQDNRRFVSQETGN--LYIAKV-EKSDVGNYTCVVTNTVTNHKVL 186

Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
              T  + +                                     E  P I+   P  V
Sbjct: 187 GPPTPLILRNDGV-------------------------------MGEYEPKIEVQFPETV 215

Query: 705 LVKKGEDLKIEVRFKALPPPKAEWT-VNGTVIVPSKR----------------------- 740
             +KG  +K+E      P P   W   +G  I    R                       
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 275

Query: 741 ----------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSL 783
                              +  +++ ++D+ V   E+   E +     K   +W KN   
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335

Query: 784 I 784
           +
Sbjct: 336 L 336

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 32/192 (16%), Positives = 54/192 (28%), Gaps = 50/192 (26%)

Query: 555 PGQAPLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-D 610
           PG  P+F++           E+  ++L  +VK +P P I W  N   +      R    D
Sbjct: 2   PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHV 669
           G  +I    +     DAG Y+ +ATN  G+  +  A++                      
Sbjct: 62  GSLLINNPNK---TQDAGTYQCIATNSFGTIVSREAKLQ--------------------- 97

Query: 670 HHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPPKAEW 728
                                             V V++G+ + +              W
Sbjct: 98  --------------------FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW 137

Query: 729 TVNGTVIVPSKR 740
             N        R
Sbjct: 138 IFNEYPSYQDNR 149

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  191 bits (486), Expect = 7e-53
 Identities = 64/545 (11%), Positives = 133/545 (24%), Gaps = 92/545 (16%)

Query: 8   LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
           L         +   V  + ++ +TL+V + A      LW +    L         ++   
Sbjct: 44  LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR--- 100

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
              V  + I  + + + G Y +  ++      +   V +                    E
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI----RNTLLYTLRRPYFRKME 154

Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
            + A L       P P VEW       +  +  S         +               N
Sbjct: 155 NQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARN 212

Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
           + G                              + L T+ +     + P    P   + +
Sbjct: 213 ELGR---------------------------ECTRLFTIDL----NQTPQTTLP--QLFL 239

Query: 248 TEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEK---------NTHTLTLIQCST 297
             GE   +  +         + W  + K +++                      +   + 
Sbjct: 240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299

Query: 298 KDKGRYSVKVTNKEGTVESAANLNV-DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 355
            D G Y+   +        +A + + ++G        +D E+ + E     V   +  + 
Sbjct: 300 NDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356

Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
              W    +     +K           +       H  GEY                LN+
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNG----YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYK-DGKEIAFSENVTLSIDGK 468
               P++        ++    +      + G       W K   K    +E +T  +  +
Sbjct: 413 RR-KPQV--------LAEASASQASCF-SDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR 462

Query: 469 KQ----------KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSV 517
           K              +  +         C      G       L    P   F+    + 
Sbjct: 463 KANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF-PFIQDGGTK 521

Query: 518 TLVPH 522
               H
Sbjct: 522 HHHHH 526

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  191 bits (485), Expect = 1e-52
 Identities = 77/627 (12%), Positives = 157/627 (25%), Gaps = 123/627 (19%)

Query: 64  QSDMHSYVSIVTIKSIKK---REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
             D+     ++           +   Y +V+++ E              +P+    +   
Sbjct: 4   NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGC--------ALRPQSSGTVYEA 55

Query: 121 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKDK 178
             V +    S  L V V    +    W      +  +       +   ++ +++ +    
Sbjct: 56  AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQA 115

Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
           G Y + + ++         +++                                      
Sbjct: 116 GEYLLFIQSEATNYTILFTVSI--------------------------------RNTLLY 143

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
                     E + A L       P P VEW       +  +  S         +     
Sbjct: 144 TLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HEL 201

Query: 299 DKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT--SDKA 355
                     N+ G   +    +++          L  L +K  E   +  +    +   
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDL---NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258

Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIR------KLLIRNISVHDEGEYTCSLPDQE-TSAE 408
            + W  + + ++      +    T R         + +++ +D G YTCS       SA 
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318

Query: 409 LNVVELP-PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI 465
           + +VE      +   +D ++ + E+  F +   K        W    K     +    + 
Sbjct: 319 VTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQKGLDN- 376

Query: 466 DGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
                 +  F       GEY      D        TL +           P V       
Sbjct: 377 ---GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK--------PQVLAEASAS 425

Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
            A+   +   P     W               ++P   E   E     K   ++  +  +
Sbjct: 426 QASCFSD-GYPLPSWTWKK----------CSDKSPNCTEEITEGVWNRKANRKVFGQWVS 474

Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
           S                              L + EA         K  A N LG++   
Sbjct: 475 S----------------------------STLNMSEAI---KGFLVKCCAYNSLGTSCET 503

Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHH 671
             +       G  P       ++H HH
Sbjct: 504 ILLNS----PGPFPFIQDGGTKHHHHH 526

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  114 bits (287), Expect = 6e-27
 Identities = 48/457 (10%), Positives = 116/457 (25%), Gaps = 117/457 (25%)

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-K 354
           S      Y +   + E          +    +  + +   +EV    +  L+V V +   
Sbjct: 23  SVGKSSSYPMVSESPEDL-----GCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV--- 411
               W      +       ++ +G +  ++I  ++    GEY   +  + T+  +     
Sbjct: 78  ISCLWVFKHSSLNCQPHFDLQNRG-VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
           +      ++     +   ++ A   I  +  + +V+W     +    +  + ++  K++K
Sbjct: 137 IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196

Query: 472 LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
           ++          +  C   +   +E     T++                           
Sbjct: 197 VLHEL----FGTDIRCCARNELGRECTRLFTIDLN------------------------- 227

Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-ASPAPSI 590
                                              +  +K    + +  K    +    +
Sbjct: 228 ---------------------------QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGL 260

Query: 591 VWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGDYKVVATNELGSATHG 644
            W   NK L                    +   +       D G Y   ++     +   
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSKHPSQS--- 316

Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
           A VT+                                    VEK      +       + 
Sbjct: 317 ALVTI------------------------------------VEKGF----INATNSSEDY 336

Query: 705 LVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
            + + E+    VRFKA P  +  WT +       ++ 
Sbjct: 337 EIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG 373

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 96.7 bits (240), Expect = 4e-21
 Identities = 51/462 (11%), Positives = 97/462 (20%), Gaps = 157/462 (33%)

Query: 377 KGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFE 436
           K  +      + SV     Y       E        +    +      V+V      + +
Sbjct: 11  KCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEA-AAVEVDVSASITLQ 69

Query: 437 IELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGD 494
           + +   G+    W      +    +  L   G    ++I       AGEY   +  +  +
Sbjct: 70  VLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATN 128

Query: 495 KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS 554
                T+++                                                   
Sbjct: 129 YTILFTVSIRNT------------------------------------------------ 140

Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGEN 613
                L+  R       E     L+   ++ P P + W   +    S  ++   +   E 
Sbjct: 141 ----LLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
            +L       E    D +  A NELG        T+D                       
Sbjct: 196 KVL------HELFGTDIRCCARNELGRECTRL-FTID----------------------- 225

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKAL-PPPKAEWTVNG 732
                           +   P       P++ +K GE L I  +   +       W +  
Sbjct: 226 ----------------LNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN 266

Query: 733 TVIVPSKR------------------------------------------------VKGK 744
             +                                                      KG 
Sbjct: 267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGF 326

Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
                  +D E+ + E     V   +  +    W  +     
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP 368

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  182 bits (464), Expect = 5e-52
 Identities = 61/329 (18%), Positives = 101/329 (30%), Gaps = 47/329 (14%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHT 167
           E P  ++   D     G  A    Q  G+P P+V W K GK +     +     E     
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 168 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
           L +    T  D+  Y     N  G +   A L V                         L
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV-------------------------L 99

Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
           + +      P+I        +    +A +     G P P++ W+KD   +          
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA---ANLNVDQGKAEFIKKLDDLEVKE 340
           +  +  L +      D+G+Y    TN  G   S+     + V      F       E+  
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219

Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
             N  +           VKW +  +++     + +       + ++    V D   YTC 
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG------RNVLELTDVKDSANYTCV 273

Query: 399 ---SLPDQETSAELNVVELPPEISVPLQD 424
              SL   E  A++ V  LP   +     
Sbjct: 274 AMSSLGVIEAVAQITVKSLPKAGTKHHHH 302

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  180 bits (458), Expect = 3e-51
 Identities = 57/329 (17%), Positives = 104/329 (31%), Gaps = 44/329 (13%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP F K+ K          +   +    P+P + W   G+ +                  
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES---AG 62

Query: 72  SIVTIKSIKKRE-EGVYTVVAKNREGEAKMDIPVKV---NTGKPEKPSILEPLHDVSITE 127
           +++ I+ ++    E VY  VA+N  GE  +   + V   +      P+I        +  
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122

Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVK 184
             +A +     G P P++ W+KD   +          +  +  L +      D+G+Y   
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182

Query: 185 VTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH 243
            TN  G   S+ ANL V                               +   P       
Sbjct: 183 ATNSAGVRYSSPANLYV-----------------------------RVQNVAPRFSILPM 213

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 303
              I  G +  ++    G P P V+W +  + +       +       L     KD   Y
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP---EDDMPVGRNVLELTDVKDSANY 270

Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKK 332
           +    +  G +E+ A + V +   +   K
Sbjct: 271 TCVAMSSLGVIEAVAQITV-KSLPKAGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  168 bits (427), Expect = 6e-47
 Identities = 54/295 (18%), Positives = 100/295 (33%), Gaps = 29/295 (9%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHT 289
           E P  ++   D     G  A    Q  G+P P+V W K GK +     +     E     
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 290 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV------DQGKAEFIKKLDDLEVKERE 342
           L +    T  D+  Y     N  G +   A L V        G            V+   
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124

Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--- 398
            A +    + +   ++ WFKD   +  S      K+     L I +    D+G+Y C   
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184

Query: 399 ----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDG 452
                      +  + V  + P  S+     ++      +       G     VKW +  
Sbjct: 185 NSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAV-GSPMPYVKWMQGA 243

Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
           +++   +++ +       + ++    ++D+  Y+C      G  E+ A +TV++ 
Sbjct: 244 EDLTPEDDMPVG------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  142 bits (360), Expect = 8e-38
 Identities = 74/365 (20%), Positives = 117/365 (32%), Gaps = 81/365 (22%)

Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE-KKGTIR 381
           +    FIK+  D        A    + T D K  V W K G+++ + +  TIE  +    
Sbjct: 4   EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63

Query: 382 KLLIRNISVH-DEGEYTC----SLPDQETSAELNVVELP------PEISVPLQDVKVSRD 430
            L I+ +    DE  Y C    S+ +    A+L V+         P I +  Q   V R 
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123

Query: 431 EKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
             A+     + G+    + W+KD   +  S +       +   L I S+   D G+Y C 
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182

Query: 489 VG-DTGDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI 546
                G + S  A L V    V                                      
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNV-------------------------------------- 204

Query: 547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR 606
                      AP F        +   G + +      SP P + W +  + L       
Sbjct: 205 -----------APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE---D 250

Query: 607 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDR 666
           ++  G N++    E     D+ +Y  VA + LG     A++TV        P        
Sbjct: 251 DMPVGRNVL----ELTDVKDSANYTCVAMSSLGVIEAVAQITVKS-----LP--KAGTKH 299

Query: 667 NHVHH 671
           +H HH
Sbjct: 300 HHHHH 304

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  127 bits (320), Expect = 2e-32
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 22/214 (10%)

Query: 6   DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS 65
           D L    P      +    E     T+       P+P++ W+ +  P+  +       Q 
Sbjct: 102 DQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161

Query: 66  DMHSYVSIVTIKSIKKREEGVYTVVAKNREGE---AKMDIPVKVNTGKPEKPSILEPLHD 122
              +    + I+S ++ ++G Y  VA N  G    +  ++ V+V   +   P        
Sbjct: 162 RSGA----LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV---QNVAPRFSILPMS 214

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
             I  G +  ++    G P P V+W +  + +       +       L     KD   Y+
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP---EDDMPVGRNVLELTDVKDSANYT 271

Query: 183 VKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
               +  G +E+ A + V         ++ P   
Sbjct: 272 CVAMSSLGVIEAVAQITV---------KSLPKAG 296

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  109 bits (275), Expect = 1e-26
 Identities = 64/337 (18%), Positives = 95/337 (28%), Gaps = 92/337 (27%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKK 469
            E PP      +D        ASF  + T GD    V W K GK++      T+  D   
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 470 QK-LIIFSAGL-EDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
              L I       D   Y C   ++ G+    A LTV                       
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRED------------------- 102

Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
                                       P   P      + K V+   T  ++     +P
Sbjct: 103 --------------------------QLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136

Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGA 645
            P I WF++  P+  S     I    +  L+++ +  ETD G Y+ VATN  G   +  A
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS-EETDQGKYECVATNSAGVRYSSPA 195

Query: 646 RVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL 705
            + V V+ V                                      AP      P    
Sbjct: 196 NLYVRVQNV--------------------------------------APRFS-ILPMSHE 216

Query: 706 VKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
           +  G ++ I       P P  +W      + P   + 
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP 253

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 40/277 (14%), Positives = 75/277 (27%), Gaps = 84/277 (30%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENII 615
           + P FI+  +++     G    + +    P P + W +  K + S   +   F +    +
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
           L ++   +  D   Y+ VA N +G  T  A++TV  E                       
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRE----------------------- 101

Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
                      ++     P ID  P  +V V++     +       P P+  W  +   +
Sbjct: 102 -----------DQLPSGFPNIDMGPQLKV-VERTRTATMLCAASGNPDPEITWFKDFLPV 149

Query: 736 VPSKR--------------------------------------------VKGKAE---FI 748
            PS                                              V+ +     F 
Sbjct: 150 DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFS 209

Query: 749 KKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
                 E+    N  +           VKW +    +
Sbjct: 210 ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDL 246

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 16/149 (10%), Positives = 29/149 (19%), Gaps = 54/149 (36%)

Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG----------------- 732
            E  P     P    +   G       +    P P+  W   G                 
Sbjct: 3   GEEPPRFIKEPKD-QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 733 -----------------------------------TVIVPSKRVKGKAEFIKKLDDLEVK 757
                                              TV+   +   G            V+
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 758 ERENAVLEVEVTSD-KADVKWFKNNSLIK 785
               A +    + +   ++ WFK+   + 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVD 150

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  183 bits (466), Expect = 2e-51
 Identities = 75/412 (18%), Positives = 133/412 (32%), Gaps = 47/412 (11%)

Query: 12  PPTFSKKTKPVYAEENSE---VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
            P F ++       E S    VTL  R  A P     W  NG  L+   +  +   +   
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-- 61

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
               +V    +K ++ G Y  VA N  G         +  G  ++ S  E    V ITEG
Sbjct: 62  ---DLVISNPVKAKDAGSYQCVATNARGTVVSR-EASLRFGFLQEFSA-EERDPVKITEG 116

Query: 129 ESAVLSVQV-GGEPSPKVEWYKDGK---LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 184
              + +       P+    W  +     +  D +    + T  L + +    D G YS  
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCF 176

Query: 185 VTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD 244
            T+    +  +                  +P                        +   D
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPS--------------------IKAKFPAD 216

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 304
                G+   L     G P P+++W K       + ++SE     L +     +D+G Y 
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP---LLHIQNVDFEDEGTYE 273

Query: 305 VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDG 363
            +  N +G       + +   + +++  + D E     +       +   +  V+W +DG
Sbjct: 274 CEAENIKGRDTYQGRIII-HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG 332

Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
           Q + +  ++ +   G    L    + + D G Y C           SAEL V
Sbjct: 333 QPLASQNRIEVS-GGE---LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  166 bits (423), Expect = 1e-45
 Identities = 75/445 (16%), Positives = 122/445 (27%), Gaps = 100/445 (22%)

Query: 236 PSILEPLHDVSITEG---ESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTH 288
           P   E        EG   E   L+ +    P     W  +G  +K     R      +  
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
               ++   KD G Y    TN  GTV S  A+L     +    ++ D +++ E    +  
Sbjct: 65  ISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122

Query: 348 VEVTSD--KADVKWFKDGQEI---KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC---- 398
                       +W  +          ++   +  G    L I      D G Y+C    
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCFATS 179

Query: 399 -----------SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--AL 445
                             +AE      P   +    D      +  + E     G+    
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF-GNPVPQ 238

Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
           +KW K                     L I +   ED G Y C      G    +  + + 
Sbjct: 239 IKWRKLDGSQ----TSKWLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292

Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
           A                                                     P +++ 
Sbjct: 293 AQ----------------------------------------------------PDWLDV 300

Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE 624
             +        +R        P P++ W R+ +PL S   + E+  GE    +L   DS 
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN-RIEVSGGELRFSKLVLEDS- 358

Query: 625 TDAGDYKVVATNELGSATHGARVTV 649
              G Y+ VA N+ G+    A +TV
Sbjct: 359 ---GMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  165 bits (418), Expect = 7e-45
 Identities = 78/423 (18%), Positives = 123/423 (29%), Gaps = 76/423 (17%)

Query: 114 PSILEPLHDVSITEG---ESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTH 166
           P   E        EG   E   L+ +    P     W  +G  +K     R      +  
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVVSELDT 225
               ++   KD G Y    TN  GTV S  A+L                   +       
Sbjct: 65  ISNPVK--AKDAGSYQCVATNARGTVVSREASLRF------------GFLQEFSA----- 105

Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGK---LIKDRQI 281
                         E    V ITEG   + +       P+    W  +     +  D + 
Sbjct: 106 --------------EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR 151

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE-----------FI 330
              + T  L + +    D G YS   T+    +  +      Q                 
Sbjct: 152 FVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA 211

Query: 331 KKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNIS 389
           K   D      +   LE     +    +KW K      +     +  +     L I+N+ 
Sbjct: 212 KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPL---LHIQNVD 265

Query: 390 VHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD-- 443
             DEG Y C              + +    P+    + D +        +      G   
Sbjct: 266 FEDEGTYECEAENIKGRDTYQGRIIIHA-QPDWLDVITDTEADIGSDLRWSCV-ASGKPR 323

Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLT 502
             V+W +DG+ +A    + +S  G+   L      LED+G Y C      G   + A LT
Sbjct: 324 PAVRWLRDGQPLASQNRIEVS-GGE---LRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379

Query: 503 VEA 505
           V+A
Sbjct: 380 VQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  145 bits (367), Expect = 4e-38
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 51/326 (15%)

Query: 7   ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQ-ETDEVVFSDQ 64
               +    +++  PV   E   V          P     W  N  P     D   F  Q
Sbjct: 96  RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155

Query: 65  SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK-------MDIPVKVNTGKPEKPSIL 117
           +  + Y     I   +  + G Y+  A +               + +     +   PSI 
Sbjct: 156 TTGNLY-----IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK 210

Query: 118 -EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
            +   D     G+   L     G P P+++W K       + ++SE     L +     +
Sbjct: 211 AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP---LLHIQNVDFE 267

Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
           D+G Y  +  N +G       + +                                  +P
Sbjct: 268 DEGTYECEAENIKGRDTYQGRIIIH--------------------------------AQP 295

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 296
             L+ + D     G     S    G+P P V W +DG+ +  +          L   +  
Sbjct: 296 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKLV 354

Query: 297 TKDKGRYSVKVTNKEGTVESAANLNV 322
            +D G Y     NK GTV ++A L V
Sbjct: 355 LEDSGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  128 bits (322), Expect = 3e-32
 Identities = 57/429 (13%), Positives = 102/429 (23%), Gaps = 108/429 (25%)

Query: 329 FIKKLDDLEVKE---RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKK-GTIRKL 383
           F ++       E    E   L     ++  A  +W  +G E+K           G +  +
Sbjct: 7   FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL--V 64

Query: 384 LIRNISVHDEGEYTCSLPDQE-----TSAELNVVELPPEISVPLQDVKVSRDEKASFEIE 438
           +   +   D G Y C   +         A L    L    +     VK++      F   
Sbjct: 65  ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124

Query: 439 LTKG--DALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
                     +W  +        +         G    L I      D G YSC      
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCF----- 176

Query: 494 DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG 553
                                           AT  ++  +  +  K+  L +       
Sbjct: 177 --------------------------------ATSHIDFITKSVFSKFSQLSLAAEDARQ 204

Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
                 +  +   +        + L      +P P I W + +        K    +   
Sbjct: 205 YA--PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ---TSKWLSSEP-- 257

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
            +L ++      D G Y+  A N  G  T+  R+                          
Sbjct: 258 -LLHIQNV-DFEDEGTYECEAENIKGRDTYQGRII------------------------- 290

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGT 733
                           +   P        +     G DL+        P P   W  +G 
Sbjct: 291 ----------------IHAQPDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333

Query: 734 VIVPSKRVK 742
            +    R++
Sbjct: 334 PLASQNRIE 342

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  113 bits (284), Expect = 3e-27
 Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 6   DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS 65
           D  +  P   +K     YA     VTLE      P P + W                  S
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT----------S 250

Query: 66  DMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSI 125
              S   ++ I+++   +EG Y   A+N +G       + ++     +P  L+ + D   
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH----AQPDWLDVITDTEA 306

Query: 126 TEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
             G     S    G+P P V W +DG+ +  +          L   +   +D G Y    
Sbjct: 307 DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKLVLEDSGMYQCVA 365

Query: 186 TNKEGTVESAANLNV 200
            NK GTV ++A L V
Sbjct: 366 ENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 88.0 bits (218), Expect = 9e-19
 Identities = 50/417 (11%), Positives = 100/417 (23%), Gaps = 132/417 (31%)

Query: 415 PPEISVPLQDVKV---SRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
            P              S +EK +      + +  A  +W  +G E+    +    +    
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCR-ARANPPATYRWKMNGTELKMGPDSRYRLVA-- 60

Query: 470 QKLIIFSAG-LEDAGEYSCRV-GDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
             L+I +    +DAG Y C      G   S +A+L                         
Sbjct: 61  GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQ------------------- 101

Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS- 585
                                               E  +   + E   +          
Sbjct: 102 --------------------------------EFSAEERDPVKITEGWGVMFTCSPPPHY 129

Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
           PA S  W  N  P       R         L + + ++  D G+Y   AT+ +   T   
Sbjct: 130 PALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS-DLGNYSCFATSHIDFITK-- 186

Query: 646 RVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL 705
                                       ++ S      +  E   + AP I    P +  
Sbjct: 187 ----------------------------SVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218

Query: 706 VKKGEDLKIEVRFKALPPPKAEWT------------VNGTVIVPSKR------------- 740
              G+ + +E      P P+ +W                 + + +               
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278

Query: 741 ------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
                       +  + +++  + D E     +       +   +  V+W ++   +
Sbjct: 279 IKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL 335

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 29/186 (15%), Positives = 46/186 (24%), Gaps = 46/186 (24%)

Query: 557 QAPLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
             P+F E+       E   +  + L  + +A+P  +  W  N   L   P  R      +
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
             L +       DAG Y+ VATN  G+                                 
Sbjct: 63  --LVISNPVKAKDAGSYQCVATNARGTVV------------------------------- 89

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPPKAEWTVNG 732
                  S E  +                 V + +G  +          P     W +N 
Sbjct: 90  -------SREASLR--FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNE 140

Query: 733 TVIVPS 738
                 
Sbjct: 141 FPNFIP 146

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  187 bits (476), Expect = 2e-51
 Identities = 68/633 (10%), Positives = 142/633 (22%), Gaps = 157/633 (24%)

Query: 82  REEGVYT----VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV 137
           R    +     ++ + + G ++  +        P  PSI     D+ +  G+   L    
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGE----PSPPSIHPGKSDLIVRVGDEIRLLCTD 60

Query: 138 GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
            G     V+W  +         T+E   +     +    + G+Y+    +      ++  
Sbjct: 61  PGF----VKWTFEI-----LDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIY 108

Query: 198 LNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSV 257
           + V                                 +   +      +   E    ++  
Sbjct: 109 VFV--------------------------------RDPAKLFLVDRSLYGKEDNDTLVRC 136

Query: 258 QVGGEPSPKVEWYK--DGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTV 314
            +   P       K   GK +             + +        +      V  +  +V
Sbjct: 137 PLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195

Query: 315 ESA-ANLNVDQGKAE---FIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKT 368
            S    L V                  ++E E   +   +          W ++  + K 
Sbjct: 196 LSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKL 255

Query: 369 SKKVTIEKKGTIRK-----LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
            +K      G         L I +  V+D G + C    +      +  L VV+    I+
Sbjct: 256 QEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-KGFIN 314

Query: 420 VP---LQDVKVSRDEKASFEIELTKGDA--LVKWYKDGKEIAFSENVTLSIDGKKQ---- 470
           +       V V+  E     +E          +W    +            + +      
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374

Query: 471 -KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
            +L +      + G Y+  V     +      + V           P +     L +   
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK--------PEILTYDRLVNGML 426

Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
                                C                                   P P
Sbjct: 427 --------------------QC------------------------------VAAGFPEP 436

Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADS-----------ETDAGDYKVVATNE 637
           +I W+                D + +                        G  +  A N+
Sbjct: 437 TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYND 496

Query: 638 LGSATHGARVTVDVEKVGRPPINSIDIDRNHVH 670
           +G  +                   I    +H H
Sbjct: 497 VGKTSAYFNFAFKG-----NNKEQIHPHHHHHH 524

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  179 bits (454), Expect = 1e-48
 Identities = 69/552 (12%), Positives = 133/552 (24%), Gaps = 109/552 (19%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP+       +      E+ L           + W +                    +  
Sbjct: 36  PPSIHPGKSDLIVRVGDEIRLLCT----DPGFVKWTFEILDETN------------ENKQ 79

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
           +    +  +    G YT   K+    +     + V    P K  +      +   E    
Sbjct: 80  NEWITEKAEATNTGKYTCTNKHGLSNS-----IYVFVRDPAKLFL--VDRSLYGKEDNDT 132

Query: 132 VLSVQVGGEPSPKVEWYK--DGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNK 188
           ++   +   P       K   GK +             + +        +      V  +
Sbjct: 133 LVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE 191

Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
             +V S                               L+V       P +        + 
Sbjct: 192 GKSVLSEKF---------------------------ILKVRPAFKAVPVVSVSKASYLLR 224

Query: 249 EGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQI--------TSEKNTHTLTLIQCSTKD 299
           EGE   ++  +    S     W ++    K ++          + +   TLT+      D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284

Query: 300 KGRYSVKVTNKEGTVESAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTSD--K 354
            G +     N  G+      L V   K            + V + EN  L VE  +    
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEV-VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKP 343

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISVHDEGEYTC----SLPDQET 405
              +W    +      +   + +         +L +  +   + G YT     S  +   
Sbjct: 344 EHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAI 403

Query: 406 SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTL 463
           +  +  V   PEI      +   R      +     G     + WY             L
Sbjct: 404 AFNVY-VNTKPEI------LTYDRLVNGMLQCV-AAGFPEPTIDWYFCPGTEQRCSASVL 455

Query: 464 SIDGKKQK------------LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEF 510
            +D +                 I S+  +  G   C+   D G   +      +      
Sbjct: 456 PVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN---- 511

Query: 511 LTKLPSVTLVPH 522
                   + PH
Sbjct: 512 ----NKEQIHPH 519

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  144 bits (365), Expect = 7e-37
 Identities = 55/341 (16%), Positives = 100/341 (29%), Gaps = 71/341 (20%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMH- 68
             P  S         E  E T+   +  V       W       +  ++       D + 
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL---EPLHDVSI 125
              + +TI S +  + GV+   A N  G A +   ++V     +K  I         V +
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV----DKGFINIFPMINTTVFV 325

Query: 126 TEGESAVLSVQVGGEPSPK-VEWYKDGKLIKDRQ--------ITSEKNTHTLTLIQCSTK 176
            +GE+  L V+    P P+  +W    +   D+          ++ +    L L +    
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT 385

Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
           + G Y+  V+N +     A N+ V+                                 KP
Sbjct: 386 EGGTYTFLVSNSDVNAAIAFNVYVN--------------------------------TKP 413

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK---------------DGKLIKDRQI 281
            I      ++     + +L     G P P ++WY                D + +     
Sbjct: 414 EI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              K     ++   + K  G    K  N  G   +  N   
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  132 bits (333), Expect = 9e-33
 Identities = 56/455 (12%), Positives = 108/455 (23%), Gaps = 109/455 (23%)

Query: 297 TKDKGRYS----VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS 352
            +    +     + +  + G+ + + +               DL V+  +   L      
Sbjct: 4   ARGAWDFLCVLLLLLRVQTGSSQPSVSPGE-PSPPSIHPGKSDLIVRVGDEIRLLCTDP- 61

Query: 353 DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVV 412
               VKW  +  +     K            +       + G+YTC+     +++    V
Sbjct: 62  --GFVKWTFEILDETNENKQNE--------WITEKAEATNTGKYTCTNKHGLSNSIYVFV 111

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
             P ++ +  + +    D        LT  +      K  +     +++    D K   +
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIM 171

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
           I             C V   G         ++                            
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPA------------------------ 207

Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIV 591
                                     P+         ++E     +   +K   +     
Sbjct: 208 ----------------------FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYST 245

Query: 592 WFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETDAGDYKVVATNELGSATHGAR 646
           W R N       K      G+        L +  A    D+G +   A N  GSA     
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DSGVFMCYANNTFGSANVTTT 304

Query: 647 VTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLV 706
           + V                                    V+K       I P     V V
Sbjct: 305 LEV------------------------------------VDKGF---INIFPMINTTVFV 325

Query: 707 KKGEDLKIEVRFKALPPPKA-EWTVNGTVIVPSKR 740
             GE++ + V ++A P P+  +W            
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE 360

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 87.8 bits (217), Expect = 3e-18
 Identities = 52/433 (12%), Positives = 100/433 (23%), Gaps = 123/433 (28%)

Query: 392 DEGEYTCSLPDQ--------ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD 443
              ++ C L           + S        PP I     D+ V   ++           
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-PPSIHPGKSDLIVRVGDEIRLLCT---DP 61

Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
             VKW  +  +         + + K+ + I   A   + G+Y+C         +   + V
Sbjct: 62  GFVKWTFEILD--------ETNENKQNEWITEKAEATNTGKYTCTN--KHGLSNSIYVFV 111

Query: 504 EAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIE 563
             PA                                    LF+V                
Sbjct: 112 RDPA-----------------------------------KLFLVD--------------- 121

Query: 564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS 623
                  KE     +   +   P  +    +  +        R I D +  I+      +
Sbjct: 122 --RSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRA 178

Query: 624 ETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTE 683
                        E  S     +  + V    +                  +   + S  
Sbjct: 179 Y-HRLCLHCSVDQEGKSVLS-EKFILKVRPAFKAV--------------PVVSVSKASYL 222

Query: 684 VDVEKPVE-TAPVIDPPPPPEVL-VKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
           +   +    T  + D          ++    K++ ++ +       +    T+ + S RV
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARV 282

Query: 742 K-------------GKAE---------------FIKKLDDLEVKERENAVLEVEVTSD-- 771
                         G A                F      + V + EN  L VE  +   
Sbjct: 283 NDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPK 342

Query: 772 KADVKWFKNNSLI 784
               +W   N   
Sbjct: 343 PEHQQWIYMNRTF 355

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  184 bits (468), Expect = 3e-51
 Identities = 52/447 (11%), Positives = 108/447 (24%), Gaps = 66/447 (14%)

Query: 76  IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
                  +   Y +V+++ E              +P+    +     V +    S  L V
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDLGC--------ALRPQSSGTVYEAAAVEVDVSASITLQV 70

Query: 136 QVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE 193
            V    +    W      +  +       +   ++ +++ +    G Y + + ++     
Sbjct: 71  LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130

Query: 194 SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESA 253
               +++                                                E +  
Sbjct: 131 ILFTVSI--------------------------------RNTLLYTLRRPYFRKMENQ-D 157

Query: 254 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 313
            L       P P VEW       +  +  S         +               N+ G 
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARNELGR 216

Query: 314 VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKK 371
             +                L  L +K  E   +  +         + W  + + ++    
Sbjct: 217 ECTRLFTIDL--NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274

Query: 372 VTIEKKGTIR------KLLIRNISVHDEGEYTCSLP-DQETSAELNVVELPPEISVPLQD 424
             +    T R         + +++ +D G YTCS       SA + +VE    I+     
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVE-KGFINATNSS 333

Query: 425 VKVSRDEKASFEIELTKGDAL----VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE 480
                D+   F     +  A       W    K     +    +       +  F     
Sbjct: 334 EDYEIDQYEEFCFS-VRFKAYPQIRCTWTFSRKSFPCEQKGLDN----GYSISKFCNHKH 388

Query: 481 DAGEYSCRVG-DTGDKESKATLTVEAP 506
             GEY      D        TL + + 
Sbjct: 389 QPGEYIFHAENDDAQFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  176 bits (448), Expect = 1e-48
 Identities = 47/425 (11%), Positives = 103/425 (24%), Gaps = 67/425 (15%)

Query: 8   LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
           L         +   V  + ++ +TL+V + A      LW +    L         ++   
Sbjct: 44  LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR--- 100

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
              V  + I  + + + G Y +  ++      +   V +                    E
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR----NTLLYTLRRPYFRKME 154

Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
            +   L       P P VEW       +  +  S         +               N
Sbjct: 155 NQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARN 212

Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
           + G   +                                          +    L  + +
Sbjct: 213 ELGRECTRLFTIDLN---------------------------------QTPQTTLPQLFL 239

Query: 248 TEGESAVLS-VQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTH------TLTLIQCST 297
             GE   +    V       + W  + K +++    ++++              +   + 
Sbjct: 240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299

Query: 298 KDKGRYSVKVTNKEGTVESAANLNV-DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 355
            D G Y+   +        +A + + ++G        +D E+ + E     V   +  + 
Sbjct: 300 NDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356

Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
              W    +     +K           +       H  GEY                LN+
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNG----YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

Query: 412 VELPP 416
                
Sbjct: 413 RSGTK 417

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  176 bits (448), Expect = 1e-48
 Identities = 47/452 (10%), Positives = 122/452 (26%), Gaps = 86/452 (19%)

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHT 289
           +P+    +     V +    S  L V V    +    W      +  +       +   +
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS 104

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVE 349
           + +++ +    G Y + + ++         +++ +    +  +       E ++A++ + 
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSI-RNTLLYTLRRPYFRKMENQDALVCIS 163

Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--SLPDQETSA 407
            +  +  V+W     + ++ K    E+   + K   + +      +  C           
Sbjct: 164 ESVPEPIVEWVLCDSQGESCK----EESPAVVKKEEKVLHELFGTDIRCCARNELGRECT 219

Query: 408 ELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSI 465
            L  ++L       L  + +   E      +    +    + W  + K +       +S 
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279

Query: 466 DG------KKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
                   +     + S    D G Y+C    +      A +T+             +  
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSS--SKHPSQSALVTIVEK--------GFINA 329

Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
                                                         E+  + +       
Sbjct: 330 TN------------------------------------------SSEDYEIDQYEEFCFS 347

Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639
            + KA P     W  + K       ++ + +G +I       + +   G+Y   A N+  
Sbjct: 348 VRFKAYPQIRCTWTFSRKSFPCE--QKGLDNGYSISK---FCNHKHQPGEYIFHAENDDA 402

Query: 640 SATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
             T    + +                ++H HH
Sbjct: 403 QFTKMFTLNIRS-----GT-------KHHHHH 422

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  123 bits (310), Expect = 3e-30
 Identities = 57/457 (12%), Positives = 123/457 (26%), Gaps = 117/457 (25%)

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-K 354
           S      Y +   + E        L      +  + +   +EV    +  L+V V +   
Sbjct: 23  SVGKSSSYPMVSESPEDL---GCALRPQ--SSGTVYEAAAVEVDVSASITLQVLVDAPGN 77

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV--- 411
               W      +       ++ +G +  ++I  ++    GEY   +  + T+  +     
Sbjct: 78  ISCLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
           +      ++     +   ++ A   I  +  + +V+W     +    +  + ++  K++K
Sbjct: 137 IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196

Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
           ++    G     +  C    + G + ++             T LP + L           
Sbjct: 197 VLHELFG----TDIRCCARNELGRECTRLFTIDLNQT--PQTTLPQLFL----------- 239

Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
                                                  V E   IR  A V  +    +
Sbjct: 240 --------------------------------------KVGEPLWIRCKA-VHVNHGFGL 260

Query: 591 VWFRNNKPLLSSPKKR------EIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
            W   NK L                    +   +    +  D G Y   ++     +   
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV-ARNDTGYYTCSSSKHPSQS--- 316

Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
           A VT+    V +  IN+                                         + 
Sbjct: 317 ALVTI----VEKGFINA------------------------------------TNSSEDY 336

Query: 705 LVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
            + + E+    VRFKA P  +  WT +       ++ 
Sbjct: 337 EIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG 373

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  118 bits (296), Expect = 1e-28
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 9/203 (4%)

Query: 1   ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEV 59
                     +  T       ++ +    + +  + V V     L W    + L+E +  
Sbjct: 216 RECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF 275

Query: 60  VFSDQSDMHSYVSIVT--IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL 117
             S  S   + + I+   + S+ + + G YT  +     ++       V   +    +  
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-----ALVTIVEKGFINAT 330

Query: 118 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKD 177
               D  I + E    SV+    P  +  W    K     Q   + N ++++        
Sbjct: 331 NSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD-NGYSISKFCNHKHQ 389

Query: 178 KGRYSVKVTNKEGTVESAANLNV 200
            G Y     N +        LN+
Sbjct: 390 PGEYIFHAENDDAQFTKMFTLNI 412

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 95.5 bits (237), Expect = 5e-21
 Identities = 42/380 (11%), Positives = 87/380 (22%), Gaps = 110/380 (28%)

Query: 368 TSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKV 427
           T  +     K  +      + SV     Y   + +        +             V+V
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPM-VSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 428 SRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYS 486
                 + ++ +   G+    W      +    +  L   G    ++I       AGEY 
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYL 119

Query: 487 CRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLF 545
             +  +  +     T+++                                          
Sbjct: 120 LFIQSEATNYTILFTVSIRNT--------------------------------------- 140

Query: 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 605
                         L+  R       E     L+   ++ P P + W   +    S  ++
Sbjct: 141 -------------LLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEE 186

Query: 606 R--EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSID 663
               +   E ++        E    D +  A NELG                        
Sbjct: 187 SPAVVKKEEKVL-------HELFGTDIRCCARNELGRECTRLFT---------------- 223

Query: 664 IDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR-FKALP 722
                               +D+ +  +T         P++ +K GE L I  +      
Sbjct: 224 --------------------IDLNQTPQT-------TLPQLFLKVGEPLWIRCKAVHVNH 256

Query: 723 PPKAEWTVNGTVIVPSKRVK 742
                W +    +      +
Sbjct: 257 GFGLTWELENKALEEGNYFE 276

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  181 bits (461), Expect = 1e-50
 Identities = 62/424 (14%), Positives = 126/424 (29%), Gaps = 59/424 (13%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            P    +   V   EN+   LE  +    +     W  +G+     +      + +    
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE---- 61

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
              +     +  +EG Y   A+   G A       ++  K    +     H+ +  EG  
Sbjct: 62  -GSLVFLRPQASDEGHYQCFAETPAGVA---SSRVISFRKTYLIASPAKTHEKTPIEGRP 117

Query: 131 AVLSVQV-GGEPSPKVEWYKDGKLIKDRQ----------ITSEKNTHTLTLIQCSTKDKG 179
             L   +    P P + W K                      + N +   + +    D  
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177

Query: 180 RYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL 239
           +Y     N     E                                 + N+G   +P   
Sbjct: 178 KYVCTAKNAAVDEEVVLV---------------------EYEIKGVTKDNSGYKGEPVPQ 216

Query: 240 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQ 294
               D+    G+  ++    G  P     ++K+GK +           +  +   L    
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276

Query: 295 CSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKL-DDLEVKERENAVLEVEVTS 352
              +D+G Y+ +V N  G  +     L V     ++ +K    + VK+ ++  +  +VT 
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTV-VSAPKYEQKPEKVIVVKQGQDVTIPCKVTG 335

Query: 353 D-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSA 407
               +V W  + + +   +    +       L+I+ +   D+G Y C       D+    
Sbjct: 336 LPAPNVVWSHNAKPLSGGRATVTD-----SGLVIKGVKNGDKGYYGCRATNEHGDKYFET 390

Query: 408 ELNV 411
            + V
Sbjct: 391 LVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  179 bits (456), Expect = 6e-50
 Identities = 77/452 (17%), Positives = 143/452 (31%), Gaps = 94/452 (20%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK--DRQITSEKNTHT 289
            + P + +   +V   E    VL   + G     K  W KDGK     +      K+  +
Sbjct: 4   DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
           L  ++    D+G Y        G   S   +            K  +    E     L+ 
Sbjct: 64  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK-TYLIASPAKTHEKTPIEGRPFQLDC 122

Query: 349 EVTS--DKADVKWFKDGQEIKTS-------KKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
            + +   K  + W K       +       +++T    G +   ++    V D  +Y C+
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182

Query: 400 -----LPDQETSAELNV---------VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL 445
                + ++    E  +          +  P      +D+     +           + +
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPM 241

Query: 446 --VKWYKDGKEIAFSENVTLSI--DGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESK-A 499
               ++K+GK++  +    ++       ++L+  +   ED G Y+C V    G  +    
Sbjct: 242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL 301

Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
            LTV +                                                     P
Sbjct: 302 KLTVVSA----------------------------------------------------P 309

Query: 560 LFIERFEEKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
            + ++ E+  V ++G  + +  KV   PAP++VW  N KPL  S  +  + D   +I  +
Sbjct: 310 KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSGLVIKGV 367

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTVD 650
           K  D     G Y   ATNE G       V V+
Sbjct: 368 KNGDK----GYYGCRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  174 bits (443), Expect = 3e-48
 Identities = 73/430 (16%), Positives = 133/430 (30%), Gaps = 76/430 (17%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK--DRQITSEKNTHT 167
            + P + +   +V   E    VL   + G     K  W KDGK     +      K+  +
Sbjct: 4   DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
           L  ++    D+G Y        G   S   +                             
Sbjct: 64  LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK-------------------------- 97

Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQ----- 280
                     +     H+ +  EG    L   +    P P + W K              
Sbjct: 98  ------TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF 151

Query: 281 -----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE------- 328
                   + N +   + +    D  +Y     N     E        +G  +       
Sbjct: 152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211

Query: 329 ---FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS--KKVTIEKKGTIRK 382
                    D+  K  +  ++     S+      +FK+G+++  +   ++T   + + ++
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271

Query: 383 LLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDV-KVSRDEKASFE 436
           LL +     DEG YTC +       Q+ S +L VV   P+     + V  V + +  +  
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-APKYEQKPEKVIVVKQGQDVTIP 330

Query: 437 IELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTG 493
            +   G     V W  + K ++     T++  G    L+I      D G Y CR   + G
Sbjct: 331 CK-VTGLPAPNVVWSHNAKPLS-GGRATVTDSG----LVIKGVKNGDKGYYGCRATNEHG 384

Query: 494 DKESKATLTV 503
           DK  +  + V
Sbjct: 385 DKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  159 bits (403), Expect = 1e-42
 Identities = 55/341 (16%), Positives = 102/341 (29%), Gaps = 52/341 (15%)

Query: 1   ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEV 59
            S +    +        KT      E     L+  L    P+P + W           +V
Sbjct: 89  SSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADV 148

Query: 60  VFSDQSDMHSYVS----IVTIKSIKKREEGVYTVVAKNREGEA-------KMDIPVKVNT 108
              D   + +          +      +   Y   AKN   +        ++    K N+
Sbjct: 149 TDFD-RRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEK 163
           G   +P       D+    G+  ++    G  P     ++K+GK +           +  
Sbjct: 208 GYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT 267

Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSE 222
           +   L       +D+G Y+ +V N  G  +     L V                P     
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV-------------VSAPKYEQ- 313

Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
                            +P   + + +G+   +  +V G P+P V W  + K +   + T
Sbjct: 314 -----------------KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT 356

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
              +   L +      DKG Y  + TN+ G       + V+
Sbjct: 357 VTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  136 bits (343), Expect = 9e-35
 Identities = 64/444 (14%), Positives = 115/444 (25%), Gaps = 110/444 (24%)

Query: 320 LNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSK--KVTIE 375
           L VD+       +  ++  +E    VLE  +  +       W KDG+     +      +
Sbjct: 1   LPVDKY-PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK 59

Query: 376 KKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL----PPEISVPLQDVKVSRDE 431
            +G+   L+       DEG Y C        A   V+               +       
Sbjct: 60  DEGS---LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116

Query: 432 KASFEIELTKGD--ALVKWYKDGKEI-------AFSENVTLSIDGKKQKLIIFSAGLEDA 482
               +  L       L+ W K             F   +T   DG     I+    + D 
Sbjct: 117 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176

Query: 483 GEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVK 540
            +Y C        ++       ++    +                               
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG------------------------- 211

Query: 541 WLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL 600
                             P+     ++   K      +     ++P     +F+N K + 
Sbjct: 212 -----------------EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVN 254

Query: 601 SSPKKREIF--DGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRP 657
            +P+ R           L  K    E D G Y     N +G    H  ++T         
Sbjct: 255 GNPEDRITRHNRTSGKRLLFKTTLPE-DEGVYTCEVDNGVGKPQKHSLKLT--------- 304

Query: 658 PINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR 717
                                           V +AP  +  P   ++VK+G+D+ I  +
Sbjct: 305 --------------------------------VVSAPKYEQKPEKVIVVKQGQDVTIPCK 332

Query: 718 FKALPPPKAEWTVNGTVIVPSKRV 741
              LP P   W+ N   +   +  
Sbjct: 333 VTGLPAPNVVWSHNAKPLSGGRAT 356

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 97.3 bits (242), Expect = 1e-21
 Identities = 53/436 (12%), Positives = 94/436 (21%), Gaps = 151/436 (34%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGKEIAFSEN--VTLSIDG 467
           V+  P +     +V    +     E  IE         W KDGK   + E+       +G
Sbjct: 3   VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62

Query: 468 KKQKLIIFSAGLEDAGEYSCRV-GDTGDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGD 525
               L+       D G Y C      G   S+  +                         
Sbjct: 63  ---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYL------------------- 100

Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
                                                 +  EKT  E    +L   +  +
Sbjct: 101 ---------------------------------IASPAKTHEKTPIEGRPFQLDCVLPNA 127

Query: 586 -PAPSIVWFRNNKPLLSSPKKREI-------FDGENIILELKEADSETDAGDYKVVATNE 637
            P P I W +       +    +         DG      + + D   D   Y   A N 
Sbjct: 128 YPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS-DIYKYVCTAKNA 186

Query: 638 LGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVI 696
                       +                                         +  PV 
Sbjct: 187 AVDEEVVLVEYEIKG-------------------------------VTKDNSGYKGEPVP 215

Query: 697 DPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR---------------- 740
                 +++ K G+   I   + + P     +  NG  +  +                  
Sbjct: 216 -QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLF 274

Query: 741 ------------------------------VKGKAEFIKKL-DDLEVKERENAVLEVEVT 769
                                         V    ++ +K    + VK+ ++  +  +VT
Sbjct: 275 KTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT 334

Query: 770 SD-KADVKWFKNNSLI 784
                +V W  N   +
Sbjct: 335 GLPAPNVVWSHNAKPL 350

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  172 bits (437), Expect = 1e-49
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 37/219 (16%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTH 166
           + P+  +PL  V + EG +A     + G P P+V W++DG++I        QI+      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
            LT+   +  + GRYS+K TN  G   S A L V                          
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV-------------------------- 97

Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
                +   P+ ++ L  +++ +G    L V+V G P+P V++Y+DG  I+   D QI+ 
Sbjct: 98  ---KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ 154

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           E + ++L + +   +D G YSV  TN  G   S A L V
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  161 bits (409), Expect = 8e-46
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTH 288
           + P+  +PL  V + EG +A     + G P P+V W++DG++I        QI+      
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKERENAVL 346
            LT+   +  + GRYS+K TN  G   S A L V    A   F+++L  + V++     L
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123

Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLP 401
           +V VT      VK+++DG EI++S    I ++G +  LLI      D G Y+     S+ 
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183

Query: 402 DQETSAELNV 411
              ++AEL V
Sbjct: 184 RATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  153 bits (388), Expect = 6e-43
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            PTF++  + V   E S  T E  +   P P++ W+ +G+ +  +               
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
             +TI ++ K   G Y++ A N  G+A     + V   +   P+ ++ L  +++ +G   
Sbjct: 65  --LTIPAVTKANSGRYSLKATNGSGQATSTAELLV-KAETAPPNFVQRLQSMTVRQGSQV 121

Query: 132 VLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
            L V+V G P+P V++Y+DG  I+   D QI+ E + ++L + +   +D G YSV  TN 
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181

Query: 189 EGTVESAANLNV 200
            G   S A L V
Sbjct: 182 VGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  134 bits (338), Expect = 4e-36
 Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 13/189 (6%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSK--KVTIEKKGTIRKLL 384
            F + L  + V E   A  E  ++     +V WF+DGQ I TS    V I       KL 
Sbjct: 7   TFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEIE 438
           I  ++  + G Y+           ++AEL V     PP     LQ + V +  +   ++ 
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126

Query: 439 LTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDK 495
           +T G    +VK+Y+DG EI  S +  +S +G    L+I  A  ED+G YS       G  
Sbjct: 127 VT-GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185

Query: 496 ESKATLTVE 504
            S A L V+
Sbjct: 186 TSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  132 bits (333), Expect = 2e-35
 Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 56/244 (22%)

Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE--NVTLSID 466
           +    P  + PLQ V V     A+FE  ++ G     V W++DG+ I+ S    V +S  
Sbjct: 1   MTTQAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFS 59

Query: 467 GKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
             + KL I +    ++G YS +    +G   S A L V+A                    
Sbjct: 60  DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA----------------- 102

Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
                                            P F++R +  TV++   +RL  +V   
Sbjct: 103 --------------------------------PPNFVQRLQSMTVRQGSQVRLQVRVTGI 130

Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
           P P + ++R+   + SS   +   +G+   L + EA  E D+G Y V ATN +G AT  A
Sbjct: 131 PTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGRATSTA 189

Query: 646 RVTV 649
            + V
Sbjct: 190 ELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 96.7 bits (241), Expect = 3e-23
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 42/188 (22%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 614
           QAP F +  +   V E  T    A +   P P + WFR+ + + +S  P  +  F     
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
            L +    ++ ++G Y + ATN  G AT  A + V                         
Sbjct: 64  KLTIPAV-TKANSGRYSLKATNGSGQATSTAELLV------------------------- 97

Query: 675 IDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
                        K     P         + V++G  ++++VR   +P P  ++  +G  
Sbjct: 98  -------------KAETAPPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAE 143

Query: 735 IVPSKRVK 742
           I  S   +
Sbjct: 144 IQSSLDFQ 151

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           E  PP F ++ + +   + S+V L+VR+  +P P + +Y +G  +Q + +   S + D++
Sbjct: 100 ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY 159

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
           S    + I      + G Y+V A N  G A
Sbjct: 160 S----LLIAEAYPEDSGTYSVNATNSVGRA 185

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 50/145 (34%)

Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK------- 742
              AP    P    V+V +G     E      P P+  W  +G VI  S           
Sbjct: 2   TTQAPTFTQPLQS-VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60

Query: 743 --------------------------GKAE---------------FIKKLDDLEVKEREN 761
                                     G+A                F+++L  + V++   
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120

Query: 762 AVLEVEVTSD-KADVKWFKNNSLIK 785
             L+V VT      VK++++ + I+
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQ 145

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  173 bits (441), Expect = 5e-49
 Identities = 68/289 (23%), Positives = 112/289 (38%), Gaps = 20/289 (6%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHT 289
                +   L  V ++ GES   +    GEP     +   G+ I       +  E     
Sbjct: 2   MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
           LT+   + +D G Y  + T+ +G  + A   L +   K  F + +   E K+ E+A +  
Sbjct: 62  LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-YQKLTFREVVSPQEFKQGEDAEVVC 120

Query: 349 EVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC-----SLPD 402
            V+S     V W    +E+ T              L I NI+  DEG Y C     +  +
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGE 179

Query: 403 QETSAELNVVELPPEISVP--LQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFS 458
            +    + +V +PP IS+P    +    R E+ +F      G     + W+++GK I  +
Sbjct: 180 IDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR-ASGSPEPAISWFRNGKLIEEN 238

Query: 459 ENVTLSIDGKKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAP 506
           E   L       +L + +    D G Y CR     G+ E +A L V   
Sbjct: 239 EKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  172 bits (437), Expect = 2e-48
 Identities = 59/317 (18%), Positives = 113/317 (35%), Gaps = 44/317 (13%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
               +     V              +  PE    +   GE +  T  VV           
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK----EGVR 59

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGES 130
           S +TI +    + G+Y   A + +G+ +   + +++     +K +  E +      +GE 
Sbjct: 60  SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY----QKLTFREVVSPQEFKQGED 115

Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
           A +  +V   P+P V W    + +    D +     N + L ++  +  D+G Y  +   
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 174

Query: 188 K-EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
           +  G ++    + +           PP+                      S+ +   + +
Sbjct: 175 EARGEIDFRDIIVIV--------NVPPA---------------------ISMPQKSFNAT 205

Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSV 305
              GE    S +  G P P + W+++GKLI+ + +   + +   LT+      D G Y  
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 265

Query: 306 KVTNKEGTVESAANLNV 322
           + TNK G  E  A L V
Sbjct: 266 RATNKAGEDEKQAFLQV 282

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  171 bits (436), Expect = 3e-48
 Identities = 57/323 (17%), Positives = 110/323 (34%), Gaps = 51/323 (15%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHT 167
                +   L  V ++ GES   +    GEP     +   G+ I       +  E     
Sbjct: 2   MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
           LT+   + +D G Y  + T+ +G  + A   L +                          
Sbjct: 62  LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-------------------------- 95

Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
                  +K +  E +      +GE A +  +V   P+P V W    + +    D +   
Sbjct: 96  ------YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM 149

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNK-EGTVESAANLNVDQGKAEFI--KKLDDLEVKE 340
             N + L ++  +  D+G Y  +   +  G ++    + +          +K  +   + 
Sbjct: 150 LAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208

Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
            E        +   +  + WF++G+ I+ ++K  ++   T  +L +RNI   D G Y C 
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCR 266

Query: 399 ---SLPDQETSAELNVVELPPEI 418
                 + E  A L V       
Sbjct: 267 ATNKAGEDEKQAFLQVFV-QHHH 288

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  149 bits (378), Expect = 2e-40
 Identities = 58/332 (17%), Positives = 110/332 (33%), Gaps = 61/332 (18%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIR 386
           +    L  +E+   E+         +   + W+   G++I ++++V ++K+G   +L I 
Sbjct: 6   QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 65

Query: 387 NISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
           N ++ D G Y C         QE +  L + +        +   +  + E A     ++ 
Sbjct: 66  NANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCRVS- 123

Query: 442 GD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKA 499
                 V W    +E+    +   ++      L I +    D G Y C          +A
Sbjct: 124 SSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEG------RVEA 176

Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
              ++                         V ++ P                      A 
Sbjct: 177 RGEIDF--------------------RDIIVIVNVP---------------------PAI 195

Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 619
              ++    T +    +    +   SP P+I WFRN K +  +   + I  G N  L ++
Sbjct: 196 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVR 253

Query: 620 EADSETDAGDYKVVATNELGSATHGARVTVDV 651
              +  D G Y   ATN+ G     A + V V
Sbjct: 254 NIINS-DGGPYVCRATNKAGEDEKQAFLQVFV 284

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  114 bits (287), Expect = 2e-28
 Identities = 56/334 (16%), Positives = 104/334 (31%), Gaps = 101/334 (30%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLI 473
             ++++ L  V++S  E   F          + WY   G++I  ++ V +  +G + +L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 474 IFSAGLEDAGEYSCRVGDTG--DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
           I++A +EDAG Y C+  D     +E+   L +                            
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------------------------- 98

Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
                                        F E    +  K+     ++ +V +SPAP++ 
Sbjct: 99  ---------------------------LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131

Query: 592 WFRNNKPLLSSPKKREIFDGEN--IILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           W  +N+ + +    R      N   IL +     ++D G Y+     E      G     
Sbjct: 132 WLYHNEEVTTISDNRFAMLANNNLQILNIN----KSDEGIYRCEGRVE----ARGEIDFR 183

Query: 650 DVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVI-DPPPPPEVLVKK 708
           D+  +                                   V   P I  P        ++
Sbjct: 184 DIIVI-----------------------------------VNVPPAISMPQKSFNATAER 208

Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
           GE++    R    P P   W  NG +I  +++  
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 30/275 (10%), Positives = 62/275 (22%), Gaps = 91/275 (33%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
                    +  +    +          P     +    + ++S+ +     +G    L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 618 LKEADSETDAGDYKVVATNELGSATHG-ARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
           +  A+ E DAG Y+  AT+  G        +                             
Sbjct: 64  IYNANIE-DAGIYRCQATDAKGQTQEATVVLE---------------------------- 94

Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                        +           P    K+GED ++  R  + P P   W  +   + 
Sbjct: 95  -------------IYQKLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140

Query: 737 PSKRVK-------------------------------GKAE---------------FIKK 750
                +                               G+ +                 +K
Sbjct: 141 TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200

Query: 751 LDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
             +   +  E        +   +  + WF+N  LI
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 235

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 45/132 (34%)

Query: 699 PPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------ 740
               +V +  GE           P     +   G  I+ ++R                  
Sbjct: 9   ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 68

Query: 741 --------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 773
                                     +  K  F + +   E K+ E+A +   V+S    
Sbjct: 69  IEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP 128

Query: 774 DVKWFKNNSLIK 785
            V W  +N  + 
Sbjct: 129 AVSWLYHNEEVT 140

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  162 bits (413), Expect = 3e-46
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 36/218 (16%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTL 168
           E P I + + DV+   GE+A LS Q+ G P P ++WY+ GK +      +++S+  THTL
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
           T++    +D+G Y+   TN+ G VE+++ L +        + TP   P Y + E      
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLL--------QATPQFHPGYPLKE------ 111

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEK 285
                                G +  L V   G P P + W+   KL+++     I + +
Sbjct: 112 ---------------KYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156

Query: 286 NTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
           +   L +     K   G+Y V+++N  GTV++  ++ +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  145 bits (369), Expect = 2e-40
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 9/197 (4%)

Query: 8   LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
           + G  P   K+ K V  +      L  ++V  P PD+ WY  G+ L ++ +   S     
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
           H+    +T+ + ++ +EGVYT +A N  GE +    + +    P+               
Sbjct: 63  HT----LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL-QATPQFHPGYPLKEKYYGAV 117

Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTK-DKGRYSV 183
           G +  L V   G P P + W+   KL+++     I + ++   L +     K   G+Y V
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177

Query: 184 KVTNKEGTVESAANLNV 200
           +++N  GTV++  ++ +
Sbjct: 178 QLSNVFGTVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  136 bits (345), Expect = 4e-37
 Identities = 52/242 (21%), Positives = 81/242 (33%), Gaps = 54/242 (22%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
            P I   ++DV     E A    ++  G  L  +KWY+ GKE+  S    +S DG+   L
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65

Query: 473 IIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
            + +   ED G Y+C    + G+ E+ + L ++A                          
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------------------------- 100

Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
              P                              E+       T+RL       P P++ 
Sbjct: 101 ---PQF---------------------HPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136

Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           WF   K L +S             L +K    +T AG YKV  +N  G+      V +  
Sbjct: 137 WFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI-Q 195

Query: 652 EK 653
           +K
Sbjct: 196 DK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  125 bits (316), Expect = 4e-33
 Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
              K++ D+  K  E A L  ++      D+KW++ G+E+  S+K  +   G    L + 
Sbjct: 9   GIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVM 68

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP--LQDVKVSRDEKASFEIELT 440
                DEG YTC     + + ETS++L +   P         +    +        +   
Sbjct: 69  TEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYI 128

Query: 441 KGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE-DAGEYSCRVG-DTGDKE 496
            G     + W+   K +  SEN+T+        L++ +   +  AG+Y  ++    G  +
Sbjct: 129 -GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD 187

Query: 497 SKATLTVE 504
           +   + ++
Sbjct: 188 AILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  110 bits (278), Expect = 6e-28
 Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 40/187 (21%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           G+AP   +  ++ T K     +L  ++   P P I W+R  K L+ S K +   DG    
Sbjct: 5   GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
           L +   + E D G Y  +ATNE+G     +++ +       P  +               
Sbjct: 65  LTVMTEEQE-DEGVYTCIATNEVGEVETSSKLLLQAT----PQFHP-------------- 105

Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
                                  P   +     G  L++ V +   P P   W     ++
Sbjct: 106 ---------------------GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL 144

Query: 736 VPSKRVK 742
             S+ + 
Sbjct: 145 QNSENIT 151

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 47/133 (35%)

Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------- 740
              +V  K GE  ++  +    P P  +W   G  ++ S++                   
Sbjct: 13  EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72

Query: 741 ------------------------VKGKAEFIKKL---DDLEVKERENAVLEVEVTSD-K 772
                                   ++   +F       +           L V       
Sbjct: 73  EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV 132

Query: 773 ADVKWFKNNSLIK 785
             + WF    L++
Sbjct: 133 PAMTWFHGQKLLQ 145

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  158 bits (402), Expect = 7e-45
 Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 36/218 (16%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
            +   +  D   Y V+ TN+ G+V   A+L V         E P                
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEV---------EVPA--------------- 100

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEK 285
              K   P  LE +  V    GE   + +   G+P P + W K   LI +    Q+   +
Sbjct: 101 ---KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157

Query: 286 NTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
           +  +L       + D G Y V   N+ G  +    L+V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  151 bits (383), Expect = 3e-42
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 15/193 (7%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA----EFIKKLDDLEVKERENAVL 346
            +   +  D   Y V+ TN+ G+V   A+L V+        + ++ +  +     E   +
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124

Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL-IRNISVHDEGEYTC----SL 400
           ++  +      + W K    I  +    +    +   L+    +   D G Y        
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184

Query: 401 PDQETSAELNVVE 413
              + + EL+V +
Sbjct: 185 GIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  147 bits (373), Expect = 7e-41
 Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 11/198 (5%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDM 67
            + P F ++ + +     S  TL  ++   P+P + WY  G+ +        +   +   
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT-GKPEKPSILEPLHDVSIT 126
           H     + I S+   +  VY V A N+ G       ++V    K   P  LE +  V   
Sbjct: 62  HQ----LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117

Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTK-DKGRYS 182
            GE   + +   G+P P + W K   LI +    Q+   ++  +L       + D G Y 
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177

Query: 183 VKVTNKEGTVESAANLNV 200
           V   N+ G  +    L+V
Sbjct: 178 VCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  131 bits (332), Expect = 3e-35
 Identities = 47/242 (19%), Positives = 68/242 (28%), Gaps = 53/242 (21%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDGK 468
            + P     L+++ V     A+   ++T G    +VKWY+ GKEI             G 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 469 KQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
             +LII S   +DA  Y  R     G     A+L VE PA                    
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA-------------------- 100

Query: 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 587
                                          P  +E            + +       P 
Sbjct: 101 ---------------------------KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133

Query: 588 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647
           P I W +    + ++   + I       L         DAG Y V A N  G       +
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193

Query: 648 TV 649
            V
Sbjct: 194 DV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  120 bits (303), Expect = 2e-31
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 14/191 (7%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS--KKVTIEKKGTIRKLL 384
            F ++L +L V+ + NA L  +VT   K  VKW++ G+EI     K    E KG   +L+
Sbjct: 6   HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELP----PEISVPLQDVKVSRDEKASFE 436
           I +++  D   Y             +A L V        P+    +  V   R E  S +
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125

Query: 437 IELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQK-LIIFSAGLEDAGEYSCRVG-DTG 493
           I  + K D ++ W K    I  + +  + +       +       +DAG Y        G
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185

Query: 494 DKESKATLTVE 504
             +    L V 
Sbjct: 186 IDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  104 bits (261), Expect = 9e-26
 Identities = 42/189 (22%), Positives = 65/189 (34%), Gaps = 40/189 (21%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 613
             AP F E      V+ +    L+ KV   P P + W+R  K +++   K  I  F G  
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
             L +     + DA  Y+V ATN+ GS +  A + V+V      P               
Sbjct: 62  HQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLP--------------- 105

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGT 733
                         K +E            V   +GE + I++ F   P P   W     
Sbjct: 106 --------------KTLE--------GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143

Query: 734 VIVPSKRVK 742
           +I  +   +
Sbjct: 144 LIDNNGHYQ 152

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 75.9 bits (187), Expect = 7e-16
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           +   P   +    V+A     V++++     P+P + W    + +               
Sbjct: 101 KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT 160

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
              S+V    +++++ G Y V AKNR G  +  + + V
Sbjct: 161 ---SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 13/146 (8%), Positives = 31/146 (21%), Gaps = 52/146 (35%)

Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG------------------ 732
             AP         + V+   +  +  +    P P  +W   G                  
Sbjct: 2   AMAPHFKEELRN-LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 733 --------------------------------TVIVPSKRVKGKAEFIKKLDDLEVKERE 760
                                           ++ V         + ++ +  +     E
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 761 NAVLEVEVTSD-KADVKWFKNNSLIK 785
              +++  +      + W K   LI 
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLID 146

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  162 bits (411), Expect = 2e-44
 Identities = 59/336 (17%), Positives = 107/336 (31%), Gaps = 43/336 (12%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
                    +    G++  LS    GG P     W KDG  +   +         L ++ 
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL-VGPQRLQVLN 67

Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGK 232
            S +D G YS +    +  +   +    D     + ++         V            
Sbjct: 68  ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDT---------- 117

Query: 233 PEKPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSE 284
              P    P       +++    +        G P+P + W K+G+  +       I   
Sbjct: 118 -GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE----FIKKLDDLEVKE 340
               +L +      D+G Y+  V NK G++     L+V +              +     
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236

Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKT------SKKVTIEKKGTIR-------KLLIR 386
             +     +V SD +  ++W K  +   +      +  VT+ K             L + 
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEI 418
           N++  D GEYTC    S+     SA L V+    E+
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL 332

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  147 bits (373), Expect = 2e-39
 Identities = 51/364 (14%), Positives = 103/364 (28%), Gaps = 78/364 (21%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
           +P     + + +       V L        P    +W  +G  L  ++ V+   Q     
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQR---- 62

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKM-----------------DIPVKVNTGKPE 112
               + + +    + G Y+   +  +                      +   +       
Sbjct: 63  ----LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118

Query: 113 KPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKN 164
            P    P       +++    +        G P+P + W K+G+  +       I     
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
             +L +      D+G Y+  V NK G++     L+V         E  P  P        
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV--------LERSPHRP-------- 222

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI--- 281
                              + +   G       +V  +  P ++W K  ++   +     
Sbjct: 223 -----------ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 271

Query: 282 -------------TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE 328
                        T++K    L+L   + +D G Y+    N  G    +A L V     E
Sbjct: 272 TPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV-LPAEE 330

Query: 329 FIKK 332
            + +
Sbjct: 331 ELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  129 bits (326), Expect = 4e-33
 Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 53/327 (16%)

Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
                    +    G++  LS    GG P     W KDG  +   +         L ++ 
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL-VGPQRLQVLN 67

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVD--------------------QGKAEFIK--- 331
            S +D G YS +    +  +   +    D                     G   + +   
Sbjct: 68  ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127

Query: 332 -KLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVT-IEKKGTIRKLLIRNI 388
                L V              +    + W K+G+E +   ++  I+ +     L++ ++
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187

Query: 389 SVHDEGEYTC----SLPDQETSAELNVVEL----PPEISVPLQDVKVSRDEKASFEIELT 440
              D G YTC           +  L+V+E     P   +    +          F  +  
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK-V 246

Query: 441 KGDAL--VKWYK----DGKEIAFSENVTLSI---------DGKKQKLIIFSAGLEDAGEY 485
             DA   ++W K    +G ++       +++         D + + L + +   EDAGEY
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306

Query: 486 SCRVG-DTGDKESKATLTVEAPAVEFL 511
           +C  G   G     A L V     E +
Sbjct: 307 TCLAGNSIGFSHHSAWLVVLPAEEELV 333

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  129 bits (325), Expect = 6e-33
 Identities = 59/368 (16%), Positives = 103/368 (27%), Gaps = 100/368 (27%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
              + + L     +   L              W KDG  +  S++V +  +    +L + 
Sbjct: 11  EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ----RLQVL 66

Query: 387 NISVHDEGEYTC------------------------SLPDQETSAELNVVELPPEISVP- 421
           N S  D G Y+C                            ++ + +  V    P  + P 
Sbjct: 67  NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126

Query: 422 ---LQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVT-LSIDGKKQKLIIF 475
               + + V       F      G+    + W K+G+E      +  + +  ++  L++ 
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 185

Query: 476 SAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
           S    D G Y+C V    G      TL V   +                           
Sbjct: 186 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--------------------------- 218

Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
                               P +  L       +T      +    KV +   P I W +
Sbjct: 219 --------------------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 258

Query: 595 ----NNKPLLSSPKKR---------EIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
               N   +                   D E  +L L    +  DAG+Y  +A N +G +
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGFS 317

Query: 642 THGARVTV 649
            H A + V
Sbjct: 318 HHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  108 bits (272), Expect = 5e-26
 Identities = 56/335 (16%), Positives = 90/335 (26%), Gaps = 75/335 (22%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ 470
           E+P       + +     +          G       W KDG  +  SE V +      Q
Sbjct: 6   EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQ 61

Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
           +L + +A  ED+G YSCR   T       ++               VT  P  GD     
Sbjct: 62  RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR--------------VTDAPSSGDDEDGE 107

Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
           + +           +  P                 +   V    T+R       +P PSI
Sbjct: 108 DEAEDTGVDTGAPYWTRPE------------RMDKKLLAVPAANTVRFRCPAAGNPTPSI 155

Query: 591 VWFRNNKPL-LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            W +N +               +   L ++      D G+Y  V  N+ GS      + V
Sbjct: 156 SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQTYTLDV 214

Query: 650 DVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKG 709
                 RP                                      +    P       G
Sbjct: 215 LERSPHRPI-------------------------------------LQAGLPANQTAVLG 237

Query: 710 EDLKIEVRFKALPPPKAEWT----VNGTVIVPSKR 740
            D++   +  +   P  +W     VNG+ + P   
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 272

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 77.0 bits (189), Expect = 3e-15
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 24/194 (12%)

Query: 552 LGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF 609
           +G   + P      +E+ V   G  + L        P    VW ++   L   P +R + 
Sbjct: 1   MGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--VPSERVLV 58

Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV 669
             +   L++  A  E D+G Y            H +    D    G              
Sbjct: 59  GPQR--LQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD------------ 103

Query: 670 HHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWT 729
              ++ +   + T VD   P  T P         V       ++        P P   W 
Sbjct: 104 ---EDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA--ANTVRFRCPAAGNPTPSISWL 158

Query: 730 VNGTVIVPSKRVKG 743
            NG       R+ G
Sbjct: 159 KNGREFRGEHRIGG 172

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  158 bits (401), Expect = 1e-42
 Identities = 77/452 (17%), Positives = 135/452 (29%), Gaps = 102/452 (22%)

Query: 234 EKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTH 288
           + P  L EP + +  +    A +  +  G P P++ W + DG  + D    +  S     
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 289 TLTLIQCS----TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
                +            Y+    N+ G++ S            +   ++   V    +A
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121

Query: 345 VLEVEVTSDKAD----VKWFKDGQEIK-----TSKKVTIEKKGTIRKLLIRNISVHD-EG 394
           V++  + S  AD    V W  D +E          K  +   G    L IR +   D   
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE---LHIREVGPEDGYK 178

Query: 395 EYTC-------SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-----KG 442
            Y C              +    V+  P   S P     V +  +      ++     +G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238

Query: 443 D--ALVKWYKDGKEIAFSENVTLS--IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKES 497
                 +WYK  +     + V L+  +      LII  A +ED+G+Y C V    G +  
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298

Query: 498 KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQ 557
           +  LTV AP                                                   
Sbjct: 299 ETVLTVTAP--------------------------------------------------- 307

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
                     +TV          +   +P  ++ W ++ K +  S       +    I  
Sbjct: 308 -LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIES 359

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
           +K+ D     G Y+    N+  SA   A + +
Sbjct: 360 VKKEDK----GMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  155 bits (394), Expect = 1e-41
 Identities = 71/421 (16%), Positives = 135/421 (32%), Gaps = 57/421 (13%)

Query: 12  PPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWY-YNGEPLQETDEVVFSDQSDMHS 69
            P F K+ T  +    ++   +E +    P P+++W   +G  + +   +          
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
           +         ++    VY  +A+N+ G       V V             ++   +  G 
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISR-DVHVRAVVA--QYYEADVNKEHVIRGN 119

Query: 130 SAVLSVQVG---GEPSPKVEWYKDGKLIKDRQITSEKN-----THTLTLIQCSTKD-KGR 180
           SAV+   +     +    V W+ D +         +       +  L + +   +D    
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179

Query: 181 YSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILE 240
           Y  +  ++                     ET  S     +   +   +++  P  P++++
Sbjct: 180 YQCRTKHRLT------------------GETRLSATKGRLVITE--PISSSAPRTPALVQ 219

Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-----EKNTHTLTLIQC 295
               + +    +  L     G P+P   WYK  +    +Q        ++ + TL +   
Sbjct: 220 K--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-K 354
             +D G+Y   V N  G       L V               V     AV   + T +  
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELN 410
             V W KDG+ I  S+            L I ++   D+G Y C         E SAEL 
Sbjct: 337 KTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386

Query: 411 V 411
           +
Sbjct: 387 L 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  153 bits (387), Expect = 1e-40
 Identities = 72/429 (16%), Positives = 130/429 (30%), Gaps = 80/429 (18%)

Query: 112 EKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTH 166
           + P  L EP + +  +    A +  +  G P P++ W + DG  + D    +  S     
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 167 TLTLIQCS----TKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
                +            Y+    N+ G++ S                            
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV------------------------- 96

Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG---GEPSPKVEWYKDGKLIKDR 279
              ++              ++   +  G SAV+   +     +    V W+ D +     
Sbjct: 97  --HVRA----VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP 150

Query: 280 QITSEKN-----THTLTLIQCSTKD-KGRYSVKVTNKEG----TVESAANLNVDQGKAEF 329
               +       +  L + +   +D    Y  +  ++         +   L + +  +  
Sbjct: 151 GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSS 210

Query: 330 IKKL-----DDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTI--R 381
             +        LE+       L            +W+K  +     + V +  +      
Sbjct: 211 APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG 270

Query: 382 KLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
            L+I++  V D G+Y C    S+  +     L V   P    +      V     A F  
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAKIDPPTQTVDFGRPAVFTC 329

Query: 438 ELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGD 494
           +   G+    V W KDGK I  SE+V          L I S   ED G Y C V  D   
Sbjct: 330 Q-YTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRES 378

Query: 495 KESKATLTV 503
            E+ A L +
Sbjct: 379 AEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  135 bits (342), Expect = 1e-34
 Identities = 56/342 (16%), Positives = 104/342 (30%), Gaps = 68/342 (19%)

Query: 2   SSLADILEGIPPTFSKKTKPVYAEENSEVTLE---VRLVAVPEPDLLWYYNGEPLQETDE 58
           S    +   +   +       +    +   ++      VA     + W+ + E       
Sbjct: 93  SRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN----- 147

Query: 59  VVFSDQSDMHSYVSIVT----IKSIKKR-EEGVYTVVAKNREG--------EAKMDIPVK 105
             F        Y+ + +    I+ +        Y    K+R          + ++ I   
Sbjct: 148 -YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP 206

Query: 106 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS---- 161
           +++  P  P++++    + +    +  L     G P+P   WYK  +    +Q       
Sbjct: 207 ISSSAPRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR 264

Query: 162 -EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVV 220
            ++ + TL +     +D G+Y   V N  G       L V                    
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT------------------- 305

Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ 280
                           S        ++  G  AV + Q  G P   V W KDGK I    
Sbjct: 306 -------------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---- 348

Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                +   L +     +DKG Y   V N   + E++A L +
Sbjct: 349 ---GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  106 bits (267), Expect = 5e-25
 Identities = 69/444 (15%), Positives = 117/444 (26%), Gaps = 126/444 (28%)

Query: 329 FIKK-LDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLL 384
           F+K+  + ++      A +E + + +   ++ W +              I   G    L+
Sbjct: 6   FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LV 62

Query: 385 IRNISVHD------EGEYTCSLPDQETSAELNVVEL----PPEISVPLQDVKVSRDEKAS 434
                  D         Y C   +Q  S     V +           +    V R   A 
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122

Query: 435 FE--IELTKGDAL--VKWYKDGKEIAF-----SENVTLSIDGKKQKLIIFSAGLEDA-GE 484
            +  I     D +  V W+ D +E  F          +   G+   L I   G ED    
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE---LHIREVGPEDGYKS 179

Query: 485 YSCRV-----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQV 539
           Y CR      G+T    +K  L +  P      + P++                      
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV--------------------- 218

Query: 540 KWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 599
                                     +   +    TI L+   +  PAPS  W++  +  
Sbjct: 219 -------------------------QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253

Query: 600 LSSPKKR--EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 657
                    +     +  L +K+A  E D+G Y  V  N +G  +    +T         
Sbjct: 254 TRKQAVVLNDRVKQVSGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETVLT--------- 303

Query: 658 PINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR 717
                                           V         PP +  V  G       +
Sbjct: 304 --------------------------------VTAPLSAKIDPPTQT-VDFGRPAVFTCQ 330

Query: 718 FKALPPPKAEWTVNGTVIVPSKRV 741
           +   P     W  +G  I  S+ V
Sbjct: 331 YTGNPIKTVSWMKDGKAIGHSESV 354

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 37/272 (13%), Positives = 64/272 (23%), Gaps = 64/272 (23%)

Query: 557 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNK-PLLSSPKKREIF-DGEN 613
           + P+F++    +          +  K   +P P I+W R++   +   P  R+I  DG+ 
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 614 IILELKEADS--ETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVH 670
           +    +  D   E  A  Y  +A N+ GS  +    V   V                   
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV------------------- 102

Query: 671 HLDNIDSPRQSTEVDVEKPVE---TAPVIDPPPPPEVLVKKGE----------------- 710
                ++      V            P         V     E                 
Sbjct: 103 -AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161

Query: 711 ---DLKI--------------EVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDD 753
              +L I                + +     +   T    VI                  
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221

Query: 754 LEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
           LE+       L            +W+K     
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 30/278 (10%), Positives = 60/278 (21%), Gaps = 83/278 (29%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKPLL--SSPKKREIFDGE 612
           A  +     ++ V    +  +   + +        + W  + +      +    +     
Sbjct: 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162

Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
           +  L ++E   E     Y+    + L   T                              
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETR----------------------------- 193

Query: 673 DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWT--- 729
               S  +   V  E    +AP         + +     + +    +  P P   W    
Sbjct: 194 ---LSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI 250

Query: 730 -----------------VNGTVIVPSKR-------------------------VKGKAEF 747
                            V+GT+I+                             V      
Sbjct: 251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 310

Query: 748 IKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
                   V     AV   + T +    V W K+   I
Sbjct: 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 348

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  147 bits (372), Expect = 1e-40
 Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 38/230 (16%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 167
             P       D +   G  A    Q  G+P PK+ W K GK + +         + +   
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64

Query: 168 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
           L +    T  D+  Y    +N  G +  +  L V         + P              
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV-----LREDQIPRGF----------- 108

Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR------Q 280
                    P+I        +    +A +     G P P++ W+KD   +         +
Sbjct: 109 ---------PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159

Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEF 329
               ++   L + Q    D+G+Y    TN  GT  SA ANL V +G    
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV-RGTKHH 208

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  135 bits (342), Expect = 2e-36
 Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 20/206 (9%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 289
             P       D +   G  A    Q  G+P PK+ W K GK + +         + +   
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64

Query: 290 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV------DQGKAEFIKKLDDLEVKERE 342
           L +    T  D+  Y    +N  G +  +  L V       +G            V+   
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124

Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKTSKK---VTIEKKGTIRKLLIRNISVHDEGEYTC 398
            A +    + +   ++ WFKD   + TS     +   +  +I  L I      D+G+Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184

Query: 399 SL-----PDQETSAELNVVELPPEIS 419
                        A L V        
Sbjct: 185 VATNSAGTRYSAPANLYVRGTKHHHH 210

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  133 bits (335), Expect = 2e-35
 Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 14/209 (6%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP F++             +   +    P P ++W   G+ +      V        S +
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT---GKPEKPSILEPLHDVSITEG 128
            I  +++   R+E +Y  VA N  GE  +   + V          P+I        +   
Sbjct: 66  RIQPLRT--PRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDR------QITSEKNTHTLTLIQCSTKDKGRYS 182
            +A +     G P P++ W+KD   +         +    ++   L + Q    D+G+Y 
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183

Query: 183 VKVTNKEGTVESA-ANLNVDPYEPKESKE 210
              TN  GT  SA ANL V     K    
Sbjct: 184 CVATNSAGTRYSAPANLYV--RGTKHHHH 210

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  113 bits (285), Expect = 7e-29
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 21/199 (10%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK-VTIEKKGTIRKLLI 385
            F +   D        A    + T D +  + W K G+++   +  V     G+   L I
Sbjct: 8   RFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67

Query: 386 RNISV-HDEGEYTC----SLPDQETSAELNVVELP------PEISVPLQDVKVSRDEKAS 434
           + +    DE  Y C    ++ +   S  L V+         P I +  Q   V R   A+
Sbjct: 68  QPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTAT 127

Query: 435 FEIELTKGD--ALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
                + G+    + W+KD   +  S N   +          L I  +   D G+Y C  
Sbjct: 128 MLCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA 186

Query: 490 G-DTGDKES-KATLTVEAP 506
               G + S  A L V   
Sbjct: 187 TNSAGTRYSAPANLYVRGT 205

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  113 bits (285), Expect = 8e-29
 Identities = 50/247 (20%), Positives = 77/247 (31%), Gaps = 56/247 (22%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN-VTLSIDGK 468
            E PP  +    D        ASF  + T GD    + W K GK+++     V    DG 
Sbjct: 3   GETPPRFTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 469 KQKLIIFSAGL-EDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
              L I       D   Y C    + G+      LTV                       
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQI----------------- 104

Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
                                       P   P      + K V+   T  ++     +P
Sbjct: 105 ----------------------------PRGFPTIDMGPQLKVVERTRTATMLCAASGNP 136

Query: 587 APSIVWFRNNKPLLSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGSA-T 642
            P I WF++  P+ +S     I          L++++++   D G Y+ VATN  G+  +
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES-DQGKYECVATNSAGTRYS 195

Query: 643 HGARVTV 649
             A + V
Sbjct: 196 APANLYV 202

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 36/184 (19%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 616
            P F     ++T    G    + +    P P IVW +  K + +   +   F DG   +L
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
            ++   +  D   Y+ VA+N +G  +   R+TV  E                        
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRE------------------------ 101

Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                     ++     P ID  P  +V V++     +       P P+  W  +   + 
Sbjct: 102 ----------DQIPRGFPTIDMGPQLKV-VERTRTATMLCAASGNPDPEITWFKDFLPVD 150

Query: 737 PSKR 740
            S  
Sbjct: 151 TSNN 154

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 18/149 (12%), Positives = 30/149 (20%), Gaps = 54/149 (36%)

Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG----------------- 732
            ET P     P        G       +    P PK  W   G                 
Sbjct: 3   GETPPRFTRTPVD-QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 733 -----------------------------------TVIVPSKRVKGKAEFIKKLDDLEVK 757
                                              TV+   +  +G            V+
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121

Query: 758 ERENAVLEVEVTSD-KADVKWFKNNSLIK 785
               A +    + +   ++ WFK+   + 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVD 150

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  146 bits (371), Expect = 2e-40
 Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 126 TEGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DR-QITSEKNTHTLTLIQCSTKDKGRY 181
           +  E   L   V       KV W  +G  I+  DR +         L + + +  DKG+Y
Sbjct: 15  STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 74

Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
            +++ + +   +   +L+   Y+   ++                      K     +   
Sbjct: 75  VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE-----------KNRARVLGGL 123

Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCST 297
              V+I EG++  L+  V G+P P+V W K+ K +              T   T+   ST
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183

Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
            D G+Y + V NK G+  S   ++V
Sbjct: 184 ADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  123 bits (310), Expect = 4e-32
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 34/233 (14%)

Query: 421 PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE 480
            L+    +   +    +     D  V W  +G  I +S+ V   + G++  L I      
Sbjct: 10  DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 69

Query: 481 DAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQV 539
           D G+Y   + D     +    L+ +A    +                             
Sbjct: 70  DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR------------------------ 105

Query: 540 KWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 599
                  +    +    +A +     +  T++E   + L   V   P P + W +N K L
Sbjct: 106 -------LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 158

Query: 600 LSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
             +      F+ G      +    +  D+G Y +V  N+ GS T    V+V +
Sbjct: 159 AQTDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  121 bits (305), Expect = 1e-31
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 27/188 (14%)

Query: 39  VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
           V +  + W +NG  ++ +D V      +       + I      ++G Y +   + +   
Sbjct: 30  VEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDKGKYVMELFDGKTGH 85

Query: 99  KMDIPVKVN-----------------TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP 141
           +  + +                      K     +      V+I EG++  L+  V G+P
Sbjct: 86  QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP 145

Query: 142 SPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
            P+V W K+ K +              T   T+   ST D G+Y + V NK G+  S   
Sbjct: 146 PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 205

Query: 198 LNVDPYEP 205
           ++V  + P
Sbjct: 206 VSV--FIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  115 bits (289), Expect = 2e-29
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 32/200 (16%)

Query: 248 TEGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DR-QITSEKNTHTLTLIQCSTKDKGRY 303
           +  E   L   V       KV W  +G  I+  DR +         L + + +  DKG+Y
Sbjct: 15  STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 74

Query: 304 SVKVTNKEGTVESAANLNVDQGKAE--------------------FIKKLDDLEVKEREN 343
            +++ + +   +   +L+                                D + ++E + 
Sbjct: 75  VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA 134

Query: 344 AVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI-EKKGTIRKLLIRNISVHDEGEYTC--- 398
             L   V  D   +V W K+ + +  +    +  + G      I  +S  D G+Y     
Sbjct: 135 LNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194

Query: 399 -SLPDQETSAELNVVELPPE 417
                + +   ++V    PE
Sbjct: 195 NKYGSETSDFTVSVFI--PE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  107 bits (268), Expect = 1e-26
 Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 31/195 (15%)

Query: 342 ENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
           E   L   VT   +   V W  +G  I+ S +V     G    L I   + +D+G+Y   
Sbjct: 18  EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77

Query: 400 LPDQ----ETSAELNV--------------------VELPPEISVPLQDVKVSRDEKASF 435
           L D     + + +L+                           +      V +   +  + 
Sbjct: 78  LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL 137

Query: 436 EIELTKGD--ALVKWYKDGKEIAFSENVTLSID-GKKQKLIIFSAGLEDAGEYSCRVG-D 491
              +  GD    V W K+ K +A +++  L  + G+     I      D+G+Y   V   
Sbjct: 138 TCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196

Query: 492 TGDKESKATLTVEAP 506
            G + S  T++V  P
Sbjct: 197 YGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 87.6 bits (217), Expect = 8e-20
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 23/173 (13%)

Query: 575 TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 633
            I+L + V        + W  N   +  S + +    GE I L++ E  +  D G Y + 
Sbjct: 19  GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVME 77

Query: 634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETA 693
             +          ++                        D   +  Q  +         A
Sbjct: 78  LFDGKTGHQKTVDLSGQAY--------------------DEAYAEFQRLKQAAIAEKNRA 117

Query: 694 PVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
            V+   P   V +++G+ L +       PPP+  W  N   +  +     K E
Sbjct: 118 RVLGGLPDV-VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 70.3 bits (172), Expect = 7e-14
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           +            V  +E   + L   +   P P++ W  N + L +TD      ++   
Sbjct: 114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
           +Y    TI  +   + G Y +V KN+ G    D  V V
Sbjct: 174 AY---FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  146 bits (369), Expect = 4e-39
 Identities = 66/291 (22%), Positives = 111/291 (38%), Gaps = 24/291 (8%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKDRQ-----ITSEKNTH 288
             +        I+ GES     QV G+     + W+  +G+ +   Q     + ++ ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
           TLT+   +  D G Y   VT ++GT   A  N+ +   K  F       E KE E+AV+ 
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-FQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 348 VEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPD 402
            +V S     + W   G+++   K V          L IR I   DEG Y C        
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 403 QETSAELNV-VELPPEISVP--LQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAF 457
           +    ++ V V +PP +     + +   +  +  +   +   G     + W KDG+ I  
Sbjct: 181 EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCD-ADGFPEPTMSWTKDGEPIEN 239

Query: 458 SENVTLS--IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
            E             +L I +    D  EY C      G++++   L V A
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  145 bits (367), Expect = 7e-39
 Identities = 57/321 (17%), Positives = 102/321 (31%), Gaps = 46/321 (14%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWY-YNGEPLQETDEVVFSDQSDMHSY 70
                                 ++     + D+ W+  NGE L    + +    +D  S 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGE 129
              +TI +    + G+Y  V    +G      + VK+     +K             EGE
Sbjct: 63  T--LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----FQKLMFKNAPTPQEFKEGE 116

Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
            AV+   V     P + W   G+ +   KD +     N + L +      D+G Y  +  
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGR 175

Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
                  +  ++                           + VN   P      + + + +
Sbjct: 176 ILARGEINFKDI--------------------------QVIVNV--PPTVQARQSIVNAT 207

Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTLTLIQCSTKDKG 301
              G+S  L     G P P + W KDG+ I      D +     ++  LT+      D+ 
Sbjct: 208 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 267

Query: 302 RYSVKVTNKEGTVESAANLNV 322
            Y     NK G  +++ +L V
Sbjct: 268 EYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  140 bits (354), Expect = 3e-37
 Identities = 59/319 (18%), Positives = 110/319 (34%), Gaps = 54/319 (16%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKDRQ-----ITSEKNTH 166
             +        I+ GES     QV G+     + W+  +G+ +   Q     + ++ ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDT 225
           TLT+   +  D G Y   VT ++GT   A  N+ +                         
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI------------------------- 97

Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQIT 282
                   +K             EGE AV+   V     P + W   G+ +   KD +  
Sbjct: 98  -------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIK---KLDDLEVK 339
              N + L +      D+G Y  +         +  ++ V       ++    + +    
Sbjct: 151 VLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209

Query: 340 ERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE--KKGTIRKLLIRNISVHDEGEY 396
             ++  L  +     +  + W KDG+ I+  ++   +        +L IRN+  +DE EY
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269

Query: 397 TC----SLPDQETSAELNV 411
            C       +Q+ S  L V
Sbjct: 270 VCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  128 bits (323), Expect = 4e-33
 Identities = 50/339 (14%), Positives = 105/339 (30%), Gaps = 71/339 (20%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFK-DGQEIKTSKK--VTIEKKGTIRK 382
           +        E+   E+     +V  D    D+ WF  +G+++  +++    +        
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63

Query: 383 LLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
           L I N ++ D G Y C +        E +  + + +            +    E A    
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVC 122

Query: 438 ELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTG 493
           ++        + W   G+++   ++V   +      L I      D G Y C  R+   G
Sbjct: 123 DVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 494 DKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL 552
           +   K   + V  P        P+V                                   
Sbjct: 181 EINFKDIQVIVNVP--------PTVQARQ------------------------------- 201

Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFD 610
                           T     ++ L+      P P++ W ++ +P+ +  +  ++ IF 
Sbjct: 202 -----------SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 250

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            ++  L ++  D   D  +Y  +A N+ G       + V
Sbjct: 251 DDSSELTIRNVDKN-DEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  119 bits (301), Expect = 4e-30
 Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 10/194 (5%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
              F     P   +E  +  +   +V+   P ++W + G  +    +V F   S+     
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN----- 154

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
           + + I+ IKK +EG Y    +           ++V    P      + + + +   G+S 
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSV 214

Query: 132 VLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
            L     G P P + W KDG+ I      D +     ++  LT+      D+  Y     
Sbjct: 215 TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274

Query: 187 NKEGTVESAANLNV 200
           NK G  +++ +L V
Sbjct: 275 NKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 99.6 bits (248), Expect = 3e-23
 Identities = 50/349 (14%), Positives = 92/349 (26%), Gaps = 99/349 (28%)

Query: 416 PEISVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGKEIAFSENVTLSI---DGKKQ 470
            ++ +     ++S  E   F   +     D  + W+    E        +S+   D    
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 471 KLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
            L I++A ++DAG Y C V   D    E+   + +                         
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK---------------------- 100

Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
                                          +F      +  KE     ++  V +S  P
Sbjct: 101 ------------------------------LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130

Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
           +I+W    + ++     R I    N  L+++    +TD G Y+           +   + 
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQ 188

Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
           V V     PP                                    V             
Sbjct: 189 VIVNV---PP-----------------------------------TVQARQSIVNATANL 210

Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVK 757
           G+ + +       P P   WT +G  I   +    K  F     +L ++
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIR 259

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  139 bits (351), Expect = 1e-37
 Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 31/233 (13%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 170
           P    I       ++  G+   L  +  G P  + +W+K  K I         NT  L  
Sbjct: 16  PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI------PNGNTSELIF 69

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
                KD G Y  +V N      S  + L+V                   + E     V+
Sbjct: 70  NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV-----------------CDIPESFQRSVD 112

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
                K  I        +  G + VL     G P P  +W+K+   +      + +    
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKL 166

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERE 342
             +     + +G Y   V N   + +S     +   +   +   D+ E    +
Sbjct: 167 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE-IIIDELNNLGHPDNKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  131 bits (331), Expect = 5e-35
 Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 35/209 (16%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 292
           P    I       ++  G+   L  +  G P  + +W+K  K I         NT  L  
Sbjct: 16  PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI------PNGNTSELIF 69

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESA-ANLNV--------------DQGKAEFIKKLDDLE 337
                KD G Y  +V N      S  + L+V               + K +   +    +
Sbjct: 70  NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQK 129

Query: 338 VKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY 396
           +      VL+           +WFK+   +    K         +  ++  + +  +G Y
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTY 180

Query: 397 TC----SLPDQETSAELNVVELPPEISVP 421
            C        Q++     +++    +  P
Sbjct: 181 WCHVYNDRDSQDSKKVEIIIDELNNLGHP 209

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  112 bits (282), Expect = 2e-28
 Identities = 27/233 (11%), Positives = 55/233 (23%), Gaps = 36/233 (15%)

Query: 2   SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF 61
              +  L       +   +         V L  R    P     W+   + +   +    
Sbjct: 8   HHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--- 64

Query: 62  SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK------------MDIPVKVNTG 109
                     S +   ++  ++ G Y     N                        V+  
Sbjct: 65  ----------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114

Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 169
              K  I        +  G + VL     G P P  +W+K+   +      + +      
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYM 168

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
           +     + +G Y   V N   + +S     +              P     + 
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN-----NLGHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 98.8 bits (246), Expect = 1e-23
 Identities = 47/255 (18%), Positives = 75/255 (29%), Gaps = 62/255 (24%)

Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGK 468
           +V    +I+V  +   V   +        T G      +W+K  KEI          +G 
Sbjct: 14  LVPRGSKITVNPESKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEIP---------NGN 63

Query: 469 KQKLIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
             +LI  +  ++DAG Y CRV +    + S+ + L V      F   +  V+        
Sbjct: 64  TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK----- 118

Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
                                                    + +    T+ L      SP
Sbjct: 119 --------------------------------LQICVEPTSQKLMPGSTLVLQCVAVGSP 146

Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGA 645
            P   WF+N  PL    KK         +  +   D E   G Y     N+  S  +   
Sbjct: 147 IPHYQWFKNELPLTHETKK---------LYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKV 196

Query: 646 RVTVDVEKVGRPPIN 660
            + +D       P N
Sbjct: 197 EIIIDELNNLGHPDN 211

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 92.3 bits (229), Expect = 3e-21
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 45/221 (20%)

Query: 312 GTVESAANLNVD--QGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT 368
           G+     + +       ++     +   V   +   L    T       +WFK  +EI  
Sbjct: 2   GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61

Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTC-------------------SLPDQETSAEL 409
                    G   +L+   + V D G Y C                    +P+    +  
Sbjct: 62  ---------GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112

Query: 410 NVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDG 467
            V E   +I V     K+        +     G      +W+K+   +            
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHETK------- 164

Query: 468 KKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKA-TLTVEAP 506
             +  ++    LE  G Y C V  D   ++SK   + ++  
Sbjct: 165 --KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 38/185 (20%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
           +        E K V     ++L  +    P     WF+ NK + +              L
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE---------L 67

Query: 617 ELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
                    DAG Y     N      +  +++ V                          
Sbjct: 68  IFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQLDVCD------------------------ 102

Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
               +S +  V+   E+   I   P     +  G  L ++      P P  +W  N   +
Sbjct: 103 --IPESFQRSVDGVSESKLQICVEPTS-QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159

Query: 736 VPSKR 740
               +
Sbjct: 160 THETK 164

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  141 bits (356), Expect = 3e-37
 Identities = 54/218 (24%), Positives = 82/218 (37%), Gaps = 36/218 (16%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
            +   +  D   Y V+ TN+ G+V   A+L V         E P                
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEV---------EVPAKIHL----------- 104

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEK 285
                  P  LE +  V    GE   + +   G+P P + W K   LI      Q+   +
Sbjct: 105 -------PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157

Query: 286 NTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
           +  +L       + D G Y V   N+ G  +    L+V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  134 bits (339), Expect = 5e-35
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 15/195 (7%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
           P   E L ++++    +A L  +V G P P V+WY+ GK I     K R    +   H L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ----GKAEFIKKLDDLEVKERENAVL 346
            +   +  D   Y V+ TN+ G+V   A+L V+        + ++ +  +     E   +
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124

Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL-IRNISVHDEGEYTCSLP--- 401
           ++  +      + W K    I  +    +    +   L+    +   D G Y        
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184

Query: 402 -DQETSAELNVVELP 415
              + + EL+V ++P
Sbjct: 185 GIDQKTVELDVADVP 199

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  134 bits (338), Expect = 7e-35
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 22/215 (10%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDM 67
            + P F ++ + +     S  TL  ++   P+P + WY  G+ +        +   +   
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREG--EAKMDIPVKVNTGKPEKPSILEPLHDVSI 125
           H       I S+   +  VY V A N+ G       + V+V   K   P  LE +  V  
Sbjct: 62  HQL----IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA-KIHLPKTLEGMGAVHA 116

Query: 126 TEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTK-DKGRY 181
             GE   + +   G+P P + W K   LI      Q+   ++  +L       + D G Y
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176

Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
            V   N+ G  +    L+V            P PP
Sbjct: 177 VVCAKNRFGIDQKTVELDV---------ADVPDPP 202

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  113 bits (284), Expect = 9e-28
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 18/195 (9%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTS--KKVTIEKKGTIRKLL 384
            F ++L +L V+ + NA L  +VT   K  VKW++ G+EI     K    E KG   +L+
Sbjct: 6   HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP-----LQDVKVSRDEKASF 435
           I +++  D   Y             +A L V   P +I +P     +  V   R E  S 
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEVEV-PAKIHLPKTLEGMGAVHALRGEVVSI 124

Query: 436 EIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQK-LIIFSAGLEDAGEYSCRVG-D 491
           +I  + G     + W K    I  + +  + +       +       +DAG Y       
Sbjct: 125 KIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 492 TGDKESKATLTVEAP 506
            G  +    L V   
Sbjct: 184 FGIDQKTVELDVADV 198

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  111 bits (280), Expect = 3e-27
 Identities = 47/241 (19%), Positives = 69/241 (28%), Gaps = 53/241 (21%)

Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDGKK 469
           + P     L+++ V     A+   ++T G    +VKWY+ GKEI             G  
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 470 QKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
            +LII S   +DA  Y  R     G     A+L VE P                      
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP---------------------- 99

Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
                   I +                   P  +E            + +       P P
Sbjct: 100 ------AKIHL-------------------PKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134

Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
            I W +    + ++   + I       L         DAG Y V A N  G       + 
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

Query: 649 V 649
           V
Sbjct: 195 V 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 99.8 bits (249), Expect = 4e-23
 Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 48/193 (24%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 613
             AP F E      V+ +    L+ KV   P P + W+R  K +++   K  I  F G  
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
             L +    ++ DA  Y+V ATN+ GS +  A + V+V                      
Sbjct: 62  HQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEV---------------------- 98

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPP----PPEVLVKKGEDLKIEVRFKALPPPKAEWT 729
                                 I  P        V   +GE + I++ F   P P   W 
Sbjct: 99  -------------------PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ 139

Query: 730 VNGTVIVPSKRVK 742
               +I  +   +
Sbjct: 140 KGQDLIDNNGHYQ 152

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  136 bits (343), Expect = 1e-36
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 22/218 (10%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD-----RQITSEKNTHT 167
               +    V I E       +Q      + KV +  + K I +       I        
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
           + + +   +D+G Y+ ++ + + T  S   L  D ++  + +                  
Sbjct: 63  MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWI--------- 113

Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK-DRQITSEK 285
               + + P  +E L    +T   + +L  +V        + WYKD + I  D +   + 
Sbjct: 114 ----RKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168

Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
              TL + + S KD G Y V + +  G  +S   L  +
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  120 bits (302), Expect = 3e-31
 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           GI P F+K    V   E  +V   ++   +     + + +N + + E  +       D +
Sbjct: 1   GIDP-FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM--HIDRN 57

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEA---------------KMDIPVKVNTGKPEK 113
           + +  + ++ ++  +EG YT   ++ +                  K     +    + + 
Sbjct: 58  TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 117

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK-DRQITSEKNTHTLTLI 171
           P  +E L    +T   + +L  +V        + WYKD + I  D +   +    TL + 
Sbjct: 118 PHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 176

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
           + S KD G Y V + +  G  +S   L  +
Sbjct: 177 EFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  116 bits (291), Expect = 1e-29
 Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 32/210 (15%)

Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVT--SDKADVKWFKDGQEIKTSK--KVTIEKKGTI 380
           G   F K    +E+ E+      ++    S  A V +  + +EI      K+ I++   I
Sbjct: 1   GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60

Query: 381 RKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL----------------------PPEI 418
            ++ +  +   DEG YT  L D + +    VV +                       P  
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120

Query: 419 SVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
              L   +V+ +     +  +   K +  + WYKD +EI+  E            L+I  
Sbjct: 121 VEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLITE 177

Query: 477 AGLEDAGEYSCRVGDT-GDKESKATLTVEA 505
              +DAG Y   + D  G  +S+  L  EA
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  103 bits (258), Expect = 3e-25
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 41/237 (17%)

Query: 419 SVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ--KLII 474
           +     V++    +  F ++  K    A V +  + KEI       + ID      ++ +
Sbjct: 6   TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65

Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
                ED G Y+ ++ D    ++    TV               +         + E   
Sbjct: 66  EKLQDEDEGTYTFQLQD---GKATNHSTVV-------------LVGDVFKKLQKEAEFQR 109

Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWF 593
            +   K                Q P F+E      V  +  + L  KV      + IVW+
Sbjct: 110 QEWIRK----------------QGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWY 152

Query: 594 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
           ++ + +    K    F      L + E   + DAG Y+V+  ++ G      ++  +
Sbjct: 153 KDEREISVDEKHD--FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 86.9 bits (215), Expect = 1e-19
 Identities = 26/185 (14%), Positives = 53/185 (28%), Gaps = 27/185 (14%)

Query: 561 FIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 619
           F +      + EKG +R   +  K S    + +  N K +   PK +   D    I+E+ 
Sbjct: 5   FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64

Query: 620 EAD-SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSP 678
                + D G Y     +   +      +  DV K                         
Sbjct: 65  MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK----------------------KLQ 102

Query: 679 RQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP-KAEWTVNGTVIVP 737
           +++     E   +  P        E  V    ++ ++ +   +       W  +   I  
Sbjct: 103 KEAEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLKCKVANIKKETHIVWYKDEREISV 160

Query: 738 SKRVK 742
            ++  
Sbjct: 161 DEKHD 165

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  138 bits (350), Expect = 1e-36
 Identities = 47/289 (16%), Positives = 92/289 (31%), Gaps = 25/289 (8%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
            P I   + ++ +  G +  L     G     VEW           + S+ ++  L+   
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP--PSPHWTLYSDGSSSILSTNN 57

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD- 353
            + ++ G Y            +A +L V      +     ++ V E ++A+L   +T   
Sbjct: 58  ATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPV 117

Query: 354 -KADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----LPDQETS 406
            +A V   +  G+ +      +           I         +Y CS           S
Sbjct: 118 LEAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSIS 174

Query: 407 AELNVVE---LPPEISVPLQDVKVSRDEKASFEIELTKGDA--LVKWYKDGKEIAFSENV 461
             L V +    PP +++   ++   R E A      +  D    V    +  ++A  +  
Sbjct: 175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS 234

Query: 462 TLSIDGKKQK--LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPA 507
               +  ++   L +     + AG YSC      G   +     V   A
Sbjct: 235 DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  120 bits (303), Expect = 2e-30
 Identities = 46/321 (14%), Positives = 82/321 (25%), Gaps = 51/321 (15%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
           G  P        +  +  + VTL        E    W     P                 
Sbjct: 2   GSIPVIEPSVPELVVKPGATVTLRCVGNGSVE----WDGPPSP---------HWTLYSDG 48

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
             SI++  +   +  G Y              I + V    P +P  +    +V + E +
Sbjct: 49  SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD--PARPWNVLA-QEVVVFEDQ 105

Query: 130 SAVLSVQV-GGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
            A+L   +        V   +  G+ +      S    H  T+ +        Y      
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM 165

Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
               V S +                             L+V    P  P++     ++  
Sbjct: 166 GGRKVMSIS---------------------------IRLKVQKVIPGPPALTLVPAELVR 198

Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIK------DRQITSEKNTHTLTLIQCSTKDKG 301
             GE+A +             + +            D      +   TL L Q   +  G
Sbjct: 199 IRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAG 258

Query: 302 RYSVKVTNKEGTVESAANLNV 322
            YS   +N +G   ++    V
Sbjct: 259 NYSCVASNVQGKHSTSMFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  111 bits (279), Expect = 3e-27
 Identities = 57/355 (16%), Positives = 95/355 (26%), Gaps = 82/355 (23%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
               + +L VK      L          V+W         S   T+   G+   L   N 
Sbjct: 7   IEPSVPELVVKPGATVTLRCVGN---GSVEWDGPP-----SPHWTLYSDGSSSILSTNNA 58

Query: 389 SVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD- 443
           +  + G Y C           +  L V +     +V  Q+V V  D+ A     LT    
Sbjct: 59  TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118

Query: 444 -ALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTGDKESKA 499
            A V   +  G+ +    N + S         I  A    + +Y C   +G         
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISI 175

Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
            L V                                                       P
Sbjct: 176 RLKV------------------------------------------------QKVIPGPP 187

Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIIL 616
                  E         +++    +      V+ ++N   L+ P++ +  +      + L
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTL 247

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
            L + D +  AG+Y  VA+N  G  +      V    V            +H HH
Sbjct: 248 NLDQVDFQ-HAGNYSCVASNVQGKHSTSMFFRV----VESAGN------SHHHHH 291

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 72.3 bits (177), Expect = 6e-14
 Identities = 49/346 (14%), Positives = 84/346 (24%), Gaps = 100/346 (28%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
            P I   + ++ V      +       G+  V+W         S + TL  DG    L  
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCV---GNGSVEWDGPP-----SPHWTLYSDGSSSILST 55

Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
            +A  ++ G Y C   GD     +   L V+ PA  +      V +     DA       
Sbjct: 56  NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFED-QDALLP---- 110

Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWF 593
                           C L  P                                  +   
Sbjct: 111 ----------------CLLTDP-----------------------------VLEAGVSLV 125

Query: 594 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
           R     L                 +  A     + DY+  A    G       + + V+K
Sbjct: 126 RVRGRPLMRHTNYSFSPWHG--FTIHRAKFI-QSQDYQCSALMG-GRKVMSISIRLKVQK 181

Query: 654 VGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK 713
           V   P                                   P +   P  E++  +GE  +
Sbjct: 182 VIPGP-----------------------------------PALTLVPA-ELVRIRGEAAQ 205

Query: 714 IEVRFKALPPPK-AEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKE 758
           I     ++          N T +   ++        +K+  L + +
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQ 251

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 38/254 (14%), Positives = 65/254 (25%), Gaps = 58/254 (22%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P+      E  VK   T+ L      S    + W         SP      DG + IL  
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP-----SPHWTLYSDGSSSILST 55

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSP 678
             A  + + G Y+     +    +    + V       P                     
Sbjct: 56  NNATFQ-NTGTYRCTEPGDPLGGSAAIHLYVKD-----PARPWN--------------VL 95

Query: 679 RQSTEVDVEKPVE-TAPVIDPPPPPEVLVKK--GEDLKIEVRFKALP------------- 722
            Q   V  ++       + DP     V + +  G  L     +   P             
Sbjct: 96  AQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQ 155

Query: 723 ----------PPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD- 771
                       +   +++  + V  K + G         +L     E A +    +S  
Sbjct: 156 SQDYQCSALMGGRKVMSISIRLKV-QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD 214

Query: 772 -KADVKWFKNNSLI 784
              DV    NN+ +
Sbjct: 215 VNFDVFLQHNNTKL 228

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  137 bits (345), Expect = 5e-36
 Identities = 59/297 (19%), Positives = 90/297 (30%), Gaps = 26/297 (8%)

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 290
             P  P I     ++ +  GE+  L     G     VEW           +  E    TL
Sbjct: 1   ADP-APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPIS--PYWTLDPESPGSTL 53

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
           T    + K+ G Y            +  +L V      +     ++ V E + AVL   +
Sbjct: 54  TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI 113

Query: 351 TSD--KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----LPD 402
           T    K  V   ++G                     +IR   V D   Y C         
Sbjct: 114 TDPALKDSVSLMREGGRQVLRKTVYFFSPWRG---FIIRKAKVLDSNTYVCKTMVNGRES 170

Query: 403 QETSAELNVVEL---PPEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYKDGK---EI 455
             T   L V  +   PP+I +    +   R E A      T  +       K G    EI
Sbjct: 171 TSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEI 230

Query: 456 AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFL 511
             + +   +   K + L + +   +DAG YSC    D G + +     V        
Sbjct: 231 PLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  125 bits (315), Expect = 4e-32
 Identities = 56/319 (17%), Positives = 83/319 (26%), Gaps = 51/319 (15%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P        +  E    VTL        E    W     P    D           S  
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDP---------ESPG 50

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
           S +T ++   +  G Y              I + V    P     L    +V++ EG+ A
Sbjct: 51  STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD--PAHSWNLLA-QEVTVVEGQEA 107

Query: 132 VLSVQV-GGEPSPKVEWYKDG-KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
           VL   +        V   ++G + +  + +          + +    D   Y  K     
Sbjct: 108 VLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNG 167

Query: 190 GTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITE 249
               S                               L+VN   PE P I      +    
Sbjct: 168 RESTSTG---------------------------IWLKVNRVHPEPPQIKLEPSKLVRIR 200

Query: 250 GESAVLSVQVGGEPSPKVEWYKDGKLI------KDRQITSEKNTHTLTLIQCSTKDKGRY 303
           GE+A +               K G          D Q    K    L+L     +D G Y
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260

Query: 304 SVKVTNKEGTVESAANLNV 322
           S   +N  GT  +  N  V
Sbjct: 261 SCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  124 bits (313), Expect = 9e-32
 Identities = 52/322 (16%), Positives = 89/322 (27%), Gaps = 52/322 (16%)

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 168
             P  P I     ++ +  GE+  L     G     VEW           +  E    TL
Sbjct: 1   ADP-APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPIS--PYWTLDPESPGSTL 53

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
           T    + K+ G Y            +  +L V         + P                
Sbjct: 54  TTRNATFKNTGTYRCTELEDPMAGSTTIHLYV---------KDPAHS------------- 91

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDG-KLIKDRQITSEKN 286
                          +V++ EG+ AVL   +        V   ++G + +  + +     
Sbjct: 92  ---------WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP 142

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAE---FIKKLDDLEVKERE 342
                + +    D   Y  K         S    L V++   E      +   L     E
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGE 202

Query: 343 NAVLEVEVT-SDKADVKWFKDGQ---EIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
            A +    T ++       K G    EI  +          +R L +  +   D G Y+C
Sbjct: 203 AAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSC 262

Query: 399 ----SLPDQETSAELNVVELPP 416
                +  +  +    VVE   
Sbjct: 263 VASNDVGTRTATMNFQVVESHH 284

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  116 bits (291), Expect = 6e-29
 Identities = 52/349 (14%), Positives = 89/349 (25%), Gaps = 82/349 (23%)

Query: 334 DDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDE 393
            +L V+  E   L          V+W             T++ +     L  RN +  + 
Sbjct: 12  PELVVEPGETVTLRCVSNGS---VEWDGPISPY-----WTLDPESPGSTLTTRNATFKNT 63

Query: 394 GEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDA--LVK 447
           G Y C          T+  L V +     ++  Q+V V   ++A     +T       V 
Sbjct: 64  GTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVS 123

Query: 448 WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTGDKESKATLTVEA 505
             ++G                +   II  A + D+  Y C   V       +   L V  
Sbjct: 124 LMREGGRQ-VLRKTVYFFSPWR-GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181

Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
                                                              + P      
Sbjct: 182 ------------------------------------------------VHPEPPQIKLEP 193

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI---FDGENIILELKEAD 622
            +         +++     +     V  +     L  P   +    +  +   L L   D
Sbjct: 194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253

Query: 623 SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
            + DAG Y  VA+N++G+ T      V                  H HH
Sbjct: 254 FQ-DAGIYSCVASNDVGTRTATMNFQVVE----SHHH--------HHHH 289

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 72.3 bits (177), Expect = 6e-14
 Identities = 40/327 (12%), Positives = 70/327 (21%), Gaps = 99/327 (30%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
            P I     ++ V   E  +        +  V+W         S   TL  +     L  
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCV---SNGSVEWDGPI-----SPYWTLDPESPGSTLTT 55

Query: 475 FSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
            +A  ++ G Y C   +      +   L V+ PA  +      VT+V    +A       
Sbjct: 56  RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEG-QEAVLP---- 110

Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWF 593
                           C +  P                             +   S+   
Sbjct: 111 ----------------CLITDP-----------------------------ALKDSVSLM 125

Query: 594 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
           R     +              I+         D+  Y        G  +    + + V +
Sbjct: 126 REGGRQVLRKTVYFFSPWRGFII---RKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNR 181

Query: 654 VGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK 713
           V   P                                   P I   P   ++  +GE  +
Sbjct: 182 VHPEP-----------------------------------PQIKLEPSK-LVRIRGEAAQ 205

Query: 714 IEVRFKALPPPKAEWTVNGTVIVPSKR 740
           I                 G   +    
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPL 232

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 22/185 (11%), Positives = 40/185 (21%), Gaps = 52/185 (28%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           AP+      E  V+   T+ L      S    + W     P  +        +     L 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDP-----ESPGSTLT 54

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
            + A  + + G Y+     +  + +    + V                            
Sbjct: 55  TRNATFK-NTGTYRCTELEDPMAGSTTIHLYVKD-------------------------- 87

Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPP-PKAEWTVNGTVIV 736
                                    EV V +G++  +                  G   V
Sbjct: 88  ---------------PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132

Query: 737 PSKRV 741
             K V
Sbjct: 133 LRKTV 137

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  131 bits (330), Expect = 3e-35
 Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 6/190 (3%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
             TF +   P   ++  +  +  R+ + P P + W Y+ E +    +  F+  ++     
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN----- 56

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
           + + I +I K +EG+Y    +           + V    P   S+ +   + +   GE  
Sbjct: 57  NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116

Query: 132 VLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
             S +  G P P + W+++GKLI+ + +   + +   LT+      D G Y  + TNK G
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 176

Query: 191 TVESAANLNV 200
             E  A L V
Sbjct: 177 EDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  123 bits (310), Expect = 2e-32
 Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 31/212 (14%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLI 171
            +  E +      +GE A +  +V   P+P V W    + +        +    + L ++
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTG 231
             +  D+G Y  +   +        ++ V                  +V+          
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIV------------------IVNV--------- 95

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTL 290
            P   S+ +   + +   GE    S +  G P P + W+++GKLI+ + +   + +   L
Sbjct: 96  -PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           T+      D G Y  + TNK G  E  A L V
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  114 bits (288), Expect = 2e-29
 Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLI 293
            +  E +      +GE A +  +V   P+P V W    + +        +    + L ++
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62

Query: 294 QCSTKDKGRYSVKVTNK-EGTVESAANLNVDQGKAEFI--KKLDDLEVKERENAVLEVEV 350
             +  D+G Y  +   +  G ++    + +          +K  +   +  E        
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 122

Query: 351 TSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQET 405
           +   +  + WF++G+ I+ ++K  ++   T  +L +RNI   D G Y C       + E 
Sbjct: 123 SGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEK 180

Query: 406 SAELNV 411
            A L V
Sbjct: 181 QAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  110 bits (276), Expect = 7e-28
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 19/190 (10%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT--SKKVTIEKKGTIRKLLI 385
           F + +   E K+ E+A +   V+S     V W    +E+ T    +  +        L I
Sbjct: 5   FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQI 61

Query: 386 RNISVHDEGEYTC-----SLPDQETSAELNVVELPPEISVP--LQDVKVSRDEKASFEIE 438
            NI+  DEG Y C     +  + +    + +V +PP IS+P    +    R E+ +F   
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121

Query: 439 LTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDK 495
              G     + W+++GK I  +E   L       +L + +    D G Y CR     G+ 
Sbjct: 122 -ASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGED 178

Query: 496 ESKATLTVEA 505
           E +A L V  
Sbjct: 179 EKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 94.1 bits (234), Expect = 3e-22
 Identities = 42/243 (17%), Positives = 70/243 (28%), Gaps = 60/243 (24%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
                  +   +  + E A              V W    +E+    +   ++      L
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-L 59

Query: 473 IIFSAGLEDAGEYSC--RVGDTGDKESKA-TLTVEAPAVEFLTKLPSVTLVPHLGDATFQ 529
            I +    D G Y C  RV   G+ + +   + V  P                       
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP----------------------- 96

Query: 530 VELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
                P I                         ++    T +    +    +   SP P+
Sbjct: 97  -----PAIS----------------------MPQKSFNATAERGEEMTFSCRASGSPEPA 129

Query: 590 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           I WFRN K +  +   + I  G N  L ++     +D G Y   ATN+ G     A + V
Sbjct: 130 ISWFRNGKLIEENE--KYILKGSNTELTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQV 186

Query: 650 DVE 652
            V+
Sbjct: 187 FVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 40/184 (21%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
              F E    +  K+     ++ +V +SPAP++ W  +N+ + +    R      N  L+
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQ 60

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
           +    +++D G Y+     E         + V V     PP                   
Sbjct: 61  ILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PP------------------- 97

Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVP 737
                            +  P        ++GE++    R    P P   W  NG +I  
Sbjct: 98  ----------------AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE 141

Query: 738 SKRV 741
           +++ 
Sbjct: 142 NEKY 145

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  134 bits (338), Expect = 1e-34
 Identities = 58/343 (16%), Positives = 106/343 (30%), Gaps = 63/343 (18%)

Query: 12  PPTFSKKTKPVYAEENSEVTLE-------VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQ 64
                +  K  +  E   V L        +     P  +L W+ N        E    ++
Sbjct: 18  CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE----EE 73

Query: 65  SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
           + M +    + +    + + G Y    +N     KM I ++V              +   
Sbjct: 74  TRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP--FISYPQI 131

Query: 125 ITEGESAVL-----SVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKD 177
           +T   S VL     S     +   K++WYKD  L+   + +  S + T  L +   + +D
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED 191

Query: 178 KGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS 237
            G Y   +T      +     +++    K+ +ET                        P 
Sbjct: 192 AGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETI-----------------------PV 228

Query: 238 ILEPLHDVSITEGESAVLSVQVG---GEPSPKVEWYK-DGKLIKD-----------RQIT 282
           I+ PL  +S + G    +  +V    G P   + W+  +   I+            RQ  
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288

Query: 283 SEKN----THTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANL 320
           SE N       L     + +D    +   V N          +
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  127 bits (319), Expect = 4e-32
 Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 49/310 (15%)

Query: 244 DVSITEGESAVLS-------VQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLI 293
                EGE   L        +     P   + W+K+        + +         L L+
Sbjct: 27  REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLL 86

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVTS 352
               +D G Y     N     + +  L V +    F+  +   + +    + VL     S
Sbjct: 87  PALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLS 146

Query: 353 DKA------DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--SLPDQE 404
           +         ++W+KD   +    +  +  +GT   LL+ ++++ D G Y C  +   + 
Sbjct: 147 EFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEG 205

Query: 405 T------SAELNVVE----LPPEISVPLQDVKVSRDEKASFE--------------IELT 440
                  S EL + +      P I  PL+ +  S   + +                +  T
Sbjct: 206 QQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWT 265

Query: 441 KGDALVKWYKDGKEIAFSENVTLSIDGKKQK---LIIFSAGLEDAG-EYSCRVGDTGDKE 496
             D  ++    G  +        S + +      LI      ED   ++ C V +T   +
Sbjct: 266 ANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ 325

Query: 497 SKATLTVEAP 506
           +    TV+  
Sbjct: 326 T-LRTTVKEH 334

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  116 bits (291), Expect = 2e-28
 Identities = 54/384 (14%), Positives = 96/384 (25%), Gaps = 91/384 (23%)

Query: 301 GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD------- 353
             ++++     G   S              +        E E   L              
Sbjct: 2   DPFTLQPAAHTGAARSCR---------FRGRHYKREFRLEGEPVALRCPQVPYWLWASVS 52

Query: 354 -KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAE 408
            + ++ W K+        +           L +      D G Y C    +    + S E
Sbjct: 53  PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE 112

Query: 409 LNVVELPP-EISVPLQDVKVSRDEKASFEIELTKGDAL------VKWYKDGKEIAFSENV 461
           L V E     +        ++                       ++WYKD   +      
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK 172

Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLV 520
            LS+ G    L++    LEDAG Y C +      ++   T ++E    +   +       
Sbjct: 173 FLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETI----- 226

Query: 521 PHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMA 580
                                                 P+ I   +  +      + +  
Sbjct: 227 --------------------------------------PVIISPLKTISASLGSRLTIPC 248

Query: 581 KVKA---SPAPSIVWFRNNKPLLSSPKKREIF----------DGENI---ILELKEADSE 624
           KV     +P  +++W+  N   + S                 + EN     L       E
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE 308

Query: 625 TDAG-DYKVVATNELGSATHGARV 647
            D   D+K V  N L   T    V
Sbjct: 309 -DLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  102 bits (255), Expect = 8e-24
 Identities = 39/316 (12%), Positives = 78/316 (24%), Gaps = 70/316 (22%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--------VKWYKDGKEIAFSENVTL 463
                      +       E  +                   + W+K+            
Sbjct: 15  ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEET 74

Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
            +  +   L +  A  ED+G Y C     +   +    L V      FL  +    ++  
Sbjct: 75  RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTL 134

Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
                                      CP                          L    
Sbjct: 135 STSGVL--------------------VCP-------------------------DLSEFT 149

Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642
           +      I W++++  L    +K     G    L + +   E DAG Y+ V T       
Sbjct: 150 RDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-HLLVHDVALE-DAGYYRCVLTFAHEGQQ 207

Query: 643 HGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE---TAPVIDPP 699
           +    ++++ ++ +    +I +          I SP ++    +   +       +    
Sbjct: 208 YNITRSIEL-RIKKKKEETIPV----------IISPLKTISASLGSRLTIPCKVFLGTGT 256

Query: 700 PPPEVLVKKGEDLKIE 715
           P   +L     D  IE
Sbjct: 257 PLTTMLWWTANDTHIE 272

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 67.0 bits (163), Expect = 4e-12
 Identities = 30/272 (11%), Positives = 71/272 (26%), Gaps = 42/272 (15%)

Query: 544 LFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRL-------MAKVKASPAPSIVWFRNN 596
             + P    G+          ++ +   E   + L             SP  ++ W +N+
Sbjct: 4   FTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND 63

Query: 597 KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGR 656
                  ++      ++  L L  A  E D+G Y     N          + V       
Sbjct: 64  SARTVPGEEETRMWAQDGALWLLPALQE-DSGTYVCTTRNASYCDKMSIELRVFENTDAF 122

Query: 657 PPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAP-----------VIDPPPPPEVL 705
            P  S             + +       D+ +                 ++D      + 
Sbjct: 123 LPFISYPQIL-------TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175

Query: 706 VKKGEDLKI-EVRFK---------ALPPPKAEWTVNGTV--IVPSKRVKGKAEFIKKLDD 753
           V+    L + +V  +                ++ +  ++   +  K+ +     I  L  
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKT 235

Query: 754 LEVKERENAVLEVEVT----SDKADVKWFKNN 781
           +         +  +V     +    + W+  N
Sbjct: 236 ISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 13/111 (11%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVA---VPEPDLLWYYNGEPLQETD-------- 57
           E   P      K + A   S +T+  ++      P   +LW+   +   E+         
Sbjct: 223 EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282

Query: 58  -EVVFSDQSDMHSYVSIVTIKSIKKREEGV-YTVVAKNREGEAKMDIPVKV 106
                  +++ +     +    + + +  + +  V  N      +   VK 
Sbjct: 283 GPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  129 bits (326), Expect = 1e-34
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 6/169 (3%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTL 290
           P+ P I  PL  V     E A     V   P P++ W ++  LIK  D + +  +N   L
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
           T++     D G Y     N  G    +      + K +  +   ++++ E   AVL    
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124

Query: 351 TSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
             + K  V W K    ++ + ++ + + G+   L I N+   D G+Y C
Sbjct: 125 MGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYRC 170

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  124 bits (314), Expect = 5e-33
 Identities = 54/215 (25%), Positives = 75/215 (34%), Gaps = 34/215 (15%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTL 168
           P+ P I  PL  V     E A     V   P P++ W ++  LIK  D + +  +N   L
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
           T++     D G Y     N  G    +                              LQV
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCG---------------------------ALQV 97

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
                 KP I  P  +V I EG  AVL     G P P V W K    +++    +   + 
Sbjct: 98  K----MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG 153

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
           +L +     +D G+Y     N  GT  S    L V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  116 bits (292), Expect = 6e-30
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 9/190 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P  +   + V A      T    + + P+P++ W  N   ++  D      ++      
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG----- 61

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
            ++TI S++  ++G+Y   A N  G A              KP I  P  +V I EG  A
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK---MKPKITRPPINVKIIEGLKA 118

Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
           VL     G P P V W K    +++    +   + +L +     +D G+Y     N  GT
Sbjct: 119 VLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178

Query: 192 VESA-ANLNV 200
             S    L V
Sbjct: 179 AYSKLVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  113 bits (285), Expect = 5e-29
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 16/190 (8%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLI 385
                L+ ++    E A     V S  + ++ W ++   IK    + +I + G +  L I
Sbjct: 9   VITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LTI 66

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
            ++   D+G Y C     +     S     V++ P+I+ P  +VK+    KA      T 
Sbjct: 67  LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT-TM 125

Query: 442 GD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESK 498
           G+    V W K    +  +  + +   G    L I +   EDAG+Y C   ++ G   SK
Sbjct: 126 GNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYRCVAKNSLGTAYSK 182

Query: 499 -ATLTVEAPA 507
              L VE  A
Sbjct: 183 LVKLEVEVFA 192

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 97.1 bits (242), Expect = 3e-23
 Identities = 48/248 (19%), Positives = 77/248 (31%), Gaps = 69/248 (27%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEI-AFSENVTLSIDGK 468
           +   P I+ PL+ V    +E A+F     +      + W ++   I  F    ++  +G 
Sbjct: 4   LPKAPVITTPLETVDALVEEVATFMCA-VESYPQPEISWTRNKILIKLFDTRYSIRENG- 61

Query: 469 KQKLIIFSAGLEDAGEYSCR----VGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
            Q L I S    D G Y C     VG     ES   L V+                    
Sbjct: 62  -QLLTILSVEDSDDGIYCCTANNGVGGA--VESCGALQVKMK------------------ 100

Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
                                             P          + E     L      
Sbjct: 101 ----------------------------------PKITRPPINVKIIEGLKAVLPCTTMG 126

Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-TH 643
           +P PS+ W + +  L  + +   +  G   I  +     + DAG Y+ VA N LG+A + 
Sbjct: 127 NPKPSVSWIKGDSALRENSRIAVLESGSLRIHNV----QKEDAGQYRCVAKNSLGTAYSK 182

Query: 644 GARVTVDV 651
             ++ V+V
Sbjct: 183 LVKLEVEV 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 31/187 (16%), Positives = 53/187 (28%), Gaps = 45/187 (24%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
           +AP+     E      +     M  V++ P P I W RN   +     +  I +    +L
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ-LL 64

Query: 617 ELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
            +     ++D G Y   A N +G A      + V +                        
Sbjct: 65  TILSV-EDSDDGIYCCTANNGVGGAVESCGALQVKM------------------------ 99

Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
                             P I   PP  V + +G    +       P P   W    + +
Sbjct: 100 -----------------KPKIT-RPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141

Query: 736 VPSKRVK 742
             + R+ 
Sbjct: 142 RENSRIA 148

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           + P  ++    V   E  +  L    +  P+P + W      L+E   +   +   +   
Sbjct: 99  MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSL--- 155

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEA 98
                I +++K + G Y  VAKN  G A
Sbjct: 156 ----RIHNVQKEDAGQYRCVAKNSLGTA 179

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 45/140 (32%)

Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR--------- 740
           +  APVI  P    V     E        ++ P P+  WT N  +I              
Sbjct: 4   LPKAPVITTPLET-VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62

Query: 741 ----------------------------------VKGKAEFIKKLDDLEVKERENAVLEV 766
                                             VK K +  +   ++++ E   AVL  
Sbjct: 63  LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122

Query: 767 EVTSD-KADVKWFKNNSLIK 785
               + K  V W K +S ++
Sbjct: 123 TTMGNPKPSVSWIKGDSALR 142

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  129 bits (327), Expect = 2e-34
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 21/209 (10%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 289
             P I+    +  +  G  A       G+P P + W K+GK +        +  +    +
Sbjct: 5   HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64

Query: 290 LTLIQ--CSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKA------EFIKKLDDLEVKE 340
           +  I+   + +D   Y     N  G   SA A L + +G           +      ++ 
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124

Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
               ++  +   +   ++ W K+  ++  S      K G    L I N    D+G+Y C 
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQGKYECV 181

Query: 399 ---SLPDQETSAELNVVELPPEISVPLQD 424
              S+  + + A    V++    +     
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  127 bits (322), Expect = 8e-34
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 37/221 (16%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 167
             P I+    +  +  G  A       G+P P + W K+GK +        +  +    +
Sbjct: 5   HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64

Query: 168 LTLIQ--CSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELD 224
           +  I+   + +D   Y     N  G   SA A L +      E  +TP            
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-----YEGDKTPAGF--------- 110

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT 282
                      P I +      I  G + +++ +  G P+P + W K+   +   + + +
Sbjct: 111 -----------PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS 159

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNV 322
            +     L +     +D+G+Y     N  GT  S A NL V
Sbjct: 160 LK--DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYV 198

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  119 bits (300), Expect = 8e-31
 Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 18/213 (8%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP   +K +          +        P P ++W  NG+ +  T       +      +
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP--GGI 63

Query: 72  SIVTIKSIKKRE-EGVYTVVAKNREGE---AKMDIPVKVNTGKPEK-PSILEPLHDVSIT 126
           SI+ I+ ++    +  Y  VA+N  G+   A   + +      P   P I +      I 
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123

Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSVK 184
            G + +++ +  G P+P + W K+   +   + + + +     L +     +D+G+Y   
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--DGFLQIENSREEDQGKYECV 181

Query: 185 VTNKEGTVES-AANLNVDPYEPKESKETPPSPP 216
             N  GT  S A NL V      + +       
Sbjct: 182 AENSMGTEHSKATNLYV------KVRRVGTKHH 208

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  109 bits (274), Expect = 2e-27
 Identities = 54/257 (21%), Positives = 85/257 (33%), Gaps = 62/257 (24%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDG 467
              PPEI    Q+  V     ASF      GD    + W K+GK+++ +++    L   G
Sbjct: 3   GAHPPEIIRKPQNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 468 KKQKLIIFSAGL-EDAGEYSC----RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
               L I       D   Y C     VGD     + ATLT+                   
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDA--VSADATLTIYEGDKT------------- 106

Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
                                           P   P+  +    + ++   T+ +  K 
Sbjct: 107 --------------------------------PAGFPVITQGPGTRVIEVGHTVLMTCKA 134

Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA- 641
             +P P+I W +N   +  S  +  + DG   I   +    E D G Y+ VA N +G+  
Sbjct: 135 IGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR----EEDQGKYECVAENSMGTEH 190

Query: 642 THGARVTVDVEKVGRPP 658
           +    + V V +VG   
Sbjct: 191 SKATNLYVKVRRVGTKH 207

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 99.5 bits (248), Expect = 8e-24
 Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 23/200 (11%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK--VTIEKKGTIRKLL 384
           E I+K  +  V+    A        D    + W K+G+++  ++     +E+ G I  L 
Sbjct: 8   EIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILR 67

Query: 385 IRNI-SVHDEGEYTCS-----LPDQETSAELNVVEL------PPEISVPLQDVKVSRDEK 432
           I  + +  D+  Y C             A L + E        P I+       +     
Sbjct: 68  IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHT 127

Query: 433 ASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
                +   G+    + W K+  ++  S       DG    L I ++  ED G+Y C   
Sbjct: 128 VLMTCK-AIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQGKYECVAE 183

Query: 491 -DTGDKESKAT-LTVEAPAV 508
              G + SKAT L V+   V
Sbjct: 184 NSMGTEHSKATNLYVKVRRV 203

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 38/189 (20%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENI 614
             P  I + + + V+  G        +  P PSIVW +N K +  +  +  +    G   
Sbjct: 5   HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64

Query: 615 ILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
           IL ++   +  D   Y+ VA N +G A +  A +T+                        
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG--------------------- 103

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGT 733
                        +K     PVI    P   +++ G  + +  +    P P   W  N T
Sbjct: 104 -------------DKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQT 149

Query: 734 VIVPSKRVK 742
            +  S    
Sbjct: 150 KVDMSNPRY 158

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  129 bits (326), Expect = 1e-32
 Identities = 49/279 (17%), Positives = 99/279 (35%), Gaps = 34/279 (12%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----------KDRQITSE 284
           +P I++   + +  E     L     GEP P++ W +                  ++  +
Sbjct: 1   QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
             + +L +      D GRY  +  ++ G  + +  L++ +   +FI         E    
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-EYAPKFISNQTIYYSWEGNPI 118

Query: 345 VLEVEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
            +  +V S+  A + W +D   +  K +  +     G    L I   S +D G Y C+  
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

Query: 402 ----DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-------KGDALVKWYK 450
                +     L + ++P         VK+   E +    +++        G  +  +  
Sbjct: 179 NHIGTRFQEYILALADVPS----SPYGVKII--ELSQTTAKVSFNKPDSHGGVPIHHYQV 232

Query: 451 DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
           D KE+A      +   G +  +++    LE    Y  RV
Sbjct: 233 DVKEVASEIWKIVRSHGVQTMVVL--NNLEPNTTYEIRV 269

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  128 bits (324), Expect = 2e-32
 Identities = 36/225 (16%), Positives = 69/225 (30%), Gaps = 48/225 (21%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----------KDRQITSE 162
           +P I++   + +  E     L     GEP P++ W +                  ++  +
Sbjct: 1   QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
             + +L +      D GRY  +  ++ G  + +  L+++                     
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE--------------------- 98

Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR--- 279
                        P  +         EG    +S  V   P   + W +D  ++  +   
Sbjct: 99  -----------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT 147

Query: 280 --QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             +  S      L +   S  D GRY+   TN  GT      L +
Sbjct: 148 NLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  120 bits (303), Expect = 1e-29
 Identities = 45/216 (20%), Positives = 71/216 (32%), Gaps = 22/216 (10%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSD---QSDMHS 69
           P    + K     EN +VTL       P P++ W    +    T+     D   +     
Sbjct: 2   PHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
             S + IK +K  + G Y   A +R G  +  + + +       P  +         EG 
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIYYSWEGN 116

Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTHTLTLIQCSTKDKGRYSVK 184
              +S  V   P   + W +D  ++  +     +  S      L +   S  D GRY+  
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176

Query: 185 VTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVV 220
            TN  GT      L +            PS P  V 
Sbjct: 177 ATNHIGTRFQEYILAL---------ADVPSSPYGVK 203

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 97.6 bits (243), Expect = 9e-22
 Identities = 41/246 (16%), Positives = 71/246 (28%), Gaps = 67/246 (27%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE-------NVTLSID 466
           P I + L++     + + +   +  +G+    + W +      F+E        + +   
Sbjct: 2   PHI-IQLKNETTYENGQVTLVCD-AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 467 GKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
                L I    L D+G Y C      G  +    L +E                     
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA------------------- 100

Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
                                            P FI         E   I +   VK++
Sbjct: 101 ---------------------------------PKFISNQTIYYSWEGNPINISCDVKSN 127

Query: 586 PAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 643
           P  SI W R+   L   ++   +    G  +ILE+       D G Y   ATN +G+   
Sbjct: 128 PPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN-DFGRYNCTATNHIGTRFQ 186

Query: 644 GARVTV 649
              + +
Sbjct: 187 EYILAL 192

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 17/218 (7%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P F       Y+ E + + +   + + P   + W  +   L   +       S      
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK-- 157

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
            I+ I      + G Y   A N  G    +  + +    P  P  ++ + ++S     +A
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL-ADVPSSPYGVK-IIELS---QTTA 212

Query: 132 VLSVQVGGE--PSPKVEW---YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
            +S          P   +    K+      + + S      + L            V   
Sbjct: 213 KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAV 272

Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
           N +G  + +          +      PSPP        
Sbjct: 273 NGKGQGDYSK-----IEIFQTLPVREPSPPSIHGQPSS 305

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 31/206 (15%), Positives = 56/206 (27%), Gaps = 51/206 (24%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-------FDG 611
           P  I+  + +T  E G + L+   +  P P I W R       +   + +          
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
            +  L +K+    +D+G Y   A + +G       +                        
Sbjct: 61  GSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLD----------------------- 96

Query: 672 LDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVN 731
                             +E AP             +G  + I    K+ PP    W  +
Sbjct: 97  ------------------IEYAPKFISNQTI-YYSWEGNPINISCDVKSNPPASIHWRRD 137

Query: 732 GTVIVPSKRVKGKAEFIKKLDDLEVK 757
             V+        K     +   LE+ 
Sbjct: 138 KLVLPAKNTTNLKTYSTGRKMILEIA 163

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  125 bits (314), Expect = 2e-32
 Identities = 45/241 (18%), Positives = 77/241 (31%), Gaps = 49/241 (20%)

Query: 103 PVKVNTGKPE--KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KD 156
              V+TG P   +P  ++    +++    +        G P+P + W K+G+      + 
Sbjct: 4   DTGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 62

Query: 157 RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
             I       +L +      D+G Y+  V NK G++     L+V         E  P  P
Sbjct: 63  GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV--------LERSPHRP 114

Query: 217 PYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG--- 273
                                      + +   G       +V  +  P ++W K     
Sbjct: 115 IL-------------------QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 155

Query: 274 ------------KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
                        ++K     S +    L L   S +D G Y  + TN  G  E A  L+
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215

Query: 322 V 322
           V
Sbjct: 216 V 216

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  117 bits (295), Expect = 6e-30
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 29/230 (12%)

Query: 226 LQVNTGKPE--KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDR 279
             V+TG P   +P  ++    +++    +        G P+P + W K+G+      +  
Sbjct: 5   TGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 63

Query: 280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE----FIKKLDD 335
            I       +L +      D+G Y+  V NK G++     L+V +              +
Sbjct: 64  GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN 123

Query: 336 LEVKERENAVLEVEVTSD-KADVKWFKDGQE------------IKTSKKVTIEKKGTIRK 382
                  +     +V SD +  ++W K  +             +   K    E      +
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183

Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVS 428
           L + N+S  D GEY C     +   E +  L+V   P      L +   +
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG-PRAAEEELVEADEA 232

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  112 bits (282), Expect = 3e-28
 Identities = 42/241 (17%), Positives = 77/241 (31%), Gaps = 34/241 (14%)

Query: 12  PPTFSKKT----KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSD 66
            P +++      K +     + V         P P + W  NG   +    +     +  
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP-SILEPLHDVSI 125
             S    + ++S+   + G YT V +N+ G  +    + V    P +P        + + 
Sbjct: 71  QWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126

Query: 126 TEGESAVLSVQVGGEPSPKVEWYKDG---------------KLIKDRQITSEKNTHTLTL 170
             G       +V  +  P ++W K                  ++K     S +    L L
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT 230
              S +D G Y  + TN  G  E A  L+V           P +    +V   +   V+ 
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWLSV---------HGPRAAEEELVEADEAGSVHH 237

Query: 231 G 231
            
Sbjct: 238 H 238

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 98.9 bits (246), Expect = 2e-23
 Identities = 47/289 (16%), Positives = 80/289 (27%), Gaps = 72/289 (24%)

Query: 406 SAELNVVELPPEISVPL----QDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSE 459
             +  V    P  + P     + + V       F      G+    + W K+G+E     
Sbjct: 2   DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP-AAGNPTPSISWLKNGREFRGEH 60

Query: 460 NV-TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSV 517
            +  + +  ++  L++ S    D G Y+C V    G      TL V   +          
Sbjct: 61  RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS---------- 110

Query: 518 TLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR 577
                                                P +  L       +T      + 
Sbjct: 111 -------------------------------------PHRPILQAGLPANQTAVLGSDVE 133

Query: 578 LMAKVKASPAPSIVWFRNNKPLLSSPKK------------REIFDGENIILELKEADSET 625
              KV +   P I W ++ +   S                       ++ L L    SE 
Sbjct: 134 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SER 192

Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDID---RNHVHH 671
           D G+Y   ATN +G A     ++V   +     +   D      +H HH
Sbjct: 193 DGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVHHHHHH 241

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 92.7 bits (230), Expect = 3e-21
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 33/237 (13%)

Query: 318 ANLNVDQGKAEFIKKLD----DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKV 372
            +  VD G   + +        L V              +    + W K+G+E +   ++
Sbjct: 3   PDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 62

Query: 373 -TIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE----LPPEISVPLQ 423
             I+ +     L++ ++   D G YTC           +  L+V+E     P   +    
Sbjct: 63  GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 122

Query: 424 DVKVSRDEKASFEIELTKGDAL--VKWYK----DGKEIAFSENVTLSIDGKK-------- 469
           +          F  +    DA   ++W K    +G ++       +++            
Sbjct: 123 NQTAVLGSDVEFHCK-VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD 181

Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAV---EFLTKLPSVTLVPH 522
            +L + +    D GEY CR     G  E    L+V  P     E +    + ++  H
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVHHH 238

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET---DEVVFSDQSDMH 68
           P   +       A   S+V    ++ +  +P + W  + E        D   +       
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173

Query: 69  SYVSIV-----TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDV 123
              S+       + ++ +R+ G Y   A N  G A+    + V+  +  +  ++E     
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAG 233

Query: 124 SITEGES 130
           S+     
Sbjct: 234 SVHHHHH 240

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  123 bits (310), Expect = 6e-32
 Identities = 43/241 (17%), Positives = 68/241 (28%), Gaps = 49/241 (20%)

Query: 104 VKVNTGKPEKPSILEPL----HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---- 155
           V  N+     P             ++    +       GG P P + W K+GK  K    
Sbjct: 6   VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 65

Query: 156 DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSP 215
                      +L +      DKG Y+  V N+ G++    +L+V         E     
Sbjct: 66  IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV--------VERSRHR 117

Query: 216 PPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL 275
           P                           + S   G       +V  +  P ++W K  + 
Sbjct: 118 P-------------------ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158

Query: 276 --------------IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
                         +      +  N   L L   +  D G Y  KV+N  G    +A L 
Sbjct: 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

Query: 322 V 322
           V
Sbjct: 219 V 219

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  120 bits (301), Expect = 8e-31
 Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 29/224 (12%)

Query: 220 VSELDTLQVNTGKPEKPSILEPL----HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL 275
           ++E D +  N+     P             ++    +       GG P P + W K+GK 
Sbjct: 1   MAE-DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE 59

Query: 276 IK----DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE--- 328
            K               +L +      DKG Y+  V N+ G++    +L+V +       
Sbjct: 60  FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119

Query: 329 -FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK---- 382
                  +       +     +V SD +  ++W K  ++  +           + K    
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179

Query: 383 -------LLIRNISVHDEGEYTC----SLPDQETSAELNVVELP 415
                  L + N++  D GEY C     +     SA L V+   
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  111 bits (278), Expect = 9e-28
 Identities = 40/228 (17%), Positives = 72/228 (31%), Gaps = 26/228 (11%)

Query: 5   ADILEGIPPTFSKKTKP----VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV- 59
            +      P ++   K           + V         P P + W  NG+  ++   + 
Sbjct: 8   ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG 67

Query: 60  VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP-SILE 118
            +  ++   S    + ++S+   ++G YT V +N  G       + V      +P     
Sbjct: 68  GYKVRNQHWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAG 123

Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL--------------IKDRQITSEKN 164
              + S   G       +V  +  P ++W K  +               +      +  N
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DPYEPKESKE 210
              L L   +  D G Y  KV+N  G    +A L V      P   KE
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 93.0 bits (231), Expect = 2e-21
 Identities = 43/226 (19%), Positives = 67/226 (29%), Gaps = 62/226 (27%)

Query: 446 VKWYKDGKEIAFSENV-TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
           ++W K+GKE      +    +  +   LI+ S    D G Y+C V  + G       L V
Sbjct: 51  MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110

Query: 504 EAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIE 563
                                                             S  +  L   
Sbjct: 111 VER-----------------------------------------------SRHRPILQAG 123

Query: 564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-----------PLLSSPKKREIFDGE 612
                +    G +  + KV +   P I W ++ +           P L   K   I    
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183

Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
             +L L    +E DAG+Y    +N +G A   A +TV + K   P 
Sbjct: 184 AEVLALFNV-TEADAGEYICKVSNYIGQANQSAWLTV-LPKQQAPG 227

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 86.1 bits (213), Expect = 4e-19
 Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKV-TIEKKGTIRKLLIRNISVHD 392
              V              +    ++W K+G+E K   ++   + +     L++ ++   D
Sbjct: 28  LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 87

Query: 393 EGEYTC----SLPDQETSAELNVVEL----PPEISVPLQDVKVSRDEKASFEIELTKGDA 444
           +G YTC           +  L+VVE     P   +    +          F  +    DA
Sbjct: 88  KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK-VYSDA 146

Query: 445 L--VKWYK-----------DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG- 490
              ++W K           DG         +       + L +F+    DAGEY C+V  
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206

Query: 491 DTGDKESKATLTVEAP 506
             G     A LTV   
Sbjct: 207 YIGQANQSAWLTVLPK 222

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 70.7 bits (173), Expect = 8e-14
 Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 43/195 (22%)

Query: 554 SPGQAPLFIERFEEK----TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREI 608
           +  +AP +    + +     V    T++       +P P++ W +N K      +     
Sbjct: 11  NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70

Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNH 668
              ++  L ++     +D G+Y  V  NE GS  H                         
Sbjct: 71  VRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINH------------------------- 104

Query: 669 VHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEW 728
                       +  +DV +     P++    P       G D++   +  +   P  +W
Sbjct: 105 ------------TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152

Query: 729 TVNGTVIVPSKRVKG 743
             +           G
Sbjct: 153 IKHVEKNGSKYGPDG 167

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  123 bits (310), Expect = 3e-31
 Identities = 46/337 (13%), Positives = 96/337 (28%), Gaps = 53/337 (15%)

Query: 12  PPTFSKKTKPVY--AEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMH 68
                ++ + +   +  N        L        + WY +         V     S +H
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKT----PVSTEQASRIH 58

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
            +   +     K  + G Y  V +N     ++ I  K    +P      + +    +   
Sbjct: 59  QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVA 118

Query: 129 ESAVLS------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
               L        +      PK++WYKD K +    I        L ++  + K +G Y+
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYT 178

Query: 183 VKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPL 242
              +      +      +                       + + +   KP +P I+ P 
Sbjct: 179 CHASYTYLGKQYPITRVI-----------------------EFITLEENKPTRPVIVSPA 215

Query: 243 HD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT---------------SEKN 286
           ++ + +  G    L   V G+ S    W  +G +I +                       
Sbjct: 216 NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 275

Query: 287 THTLTLIQCSTKD-KGRYSVKVTNKEGTVESAANLNV 322
              L + +  ++  K  ++    N  G   +   L  
Sbjct: 276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  110 bits (275), Expect = 1e-26
 Identities = 44/314 (14%), Positives = 79/314 (25%), Gaps = 61/314 (19%)

Query: 118 EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQC 173
           E    +  +  E  V    +   E    + WYKD        ++     ++   L  +  
Sbjct: 10  EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69

Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233
             +D G Y   V N    +    +      EP             +              
Sbjct: 70  KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKL-------------- 115

Query: 234 EKPSILEPLHDVSITEGESAVLS------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
                                L        +      PK++WYKD K +    I      
Sbjct: 116 --------------PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK 161

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEFIK------KLDDLEV 338
             L ++  + K +G Y+   +      +      +      + +  +        + +EV
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV 221

Query: 339 KERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK------------LLI 385
                  L   VT        W  +G  I     V  E   ++              L I
Sbjct: 222 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 281

Query: 386 RNISVHD-EGEYTC 398
             I     +  +TC
Sbjct: 282 SEIESRFYKHPFTC 295

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  109 bits (273), Expect = 2e-26
 Identities = 40/307 (13%), Positives = 80/307 (26%), Gaps = 47/307 (15%)

Query: 240 EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQC 295
           E    +  +  E  V    +   E    + WYKD        ++     ++   L  +  
Sbjct: 10  EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTS 352
             +D G Y   V N    +    +    + +       + +   ++    +  L      
Sbjct: 70  KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYME 129

Query: 353 D-------KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQET 405
                      ++W+KD + +          K     L++ N++    G YTC       
Sbjct: 130 FFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYL 186

Query: 406 SAELNV------------VELPPEISVPLQD-VKVSRDEKASFEIELTKGDAL--VKWYK 450
             +  +                P I  P  + ++V    +      +T G       W  
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKW 245

Query: 451 DGKEIAFSENV------------TLSIDGKKQKLIIFSAGLED-AGEYSCRVG-DTGDKE 496
           +G  I   + V                      L I           ++C      G   
Sbjct: 246 NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 305

Query: 497 SKATLTV 503
           +   L  
Sbjct: 306 AYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  105 bits (264), Expect = 4e-25
 Identities = 51/349 (14%), Positives = 87/349 (24%), Gaps = 80/349 (22%)

Query: 335 DLEVKERENAVLEVEVT--SDKADVKWFKDGQE--IKTSKKVTIEKKGTIRKLLIRNISV 390
            L     E  V    +     K  + W+KD  +  + T +   I +      L      V
Sbjct: 14  ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK--LWFVPAKV 71

Query: 391 HDEGEYTC----SLPDQETSAELNVVELPPEISVPLQ---DVKVSRDEKASFEIELTKGD 443
            D G Y C    S            VE  P +    Q     K+             +  
Sbjct: 72  EDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFF 131

Query: 444 AL-------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDK 495
                    ++WYKD K +         +  +   LI+ +   +  G Y+C    T   K
Sbjct: 132 KNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYLGK 188

Query: 496 ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP 555
           +   T  +E   +E                                              
Sbjct: 189 QYPITRVIEFITLEENKPTR---------------------------------------- 208

Query: 556 GQAPLFIERFEEKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-------- 606
              P+ +    E    + G  I+L+  V    +    W  N   +               
Sbjct: 209 ---PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVE 265

Query: 607 ----EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
               +       +L + E +S      +   A N  G      ++   V
Sbjct: 266 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  102 bits (256), Expect = 5e-24
 Identities = 52/325 (16%), Positives = 93/325 (28%), Gaps = 83/325 (25%)

Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
           + WYKD  +   S      I   K+KL    A +ED+G Y C V   +     K +    
Sbjct: 38  ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV 97

Query: 505 --APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI 562
              P + +  +      +P  GD                        CP     +     
Sbjct: 98  ENEPNLCYNAQAIFKQKLPVAGDGGL--------------------VCPYMEFFKN---- 133

Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 622
                               + +  P + W+++ KPLL             I++ +    
Sbjct: 134 --------------------ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV---- 169

Query: 623 SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQST 682
           +E   G+Y   A+       +     ++                                
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEF------------------------------- 198

Query: 683 EVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
            + +E+   T PVI  P    + V  G  +++           A W  NG+VI     V 
Sbjct: 199 -ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVL 257

Query: 743 GKAEFIKKLDDLEVKERENAVLEVE 767
           G+  +  +    + +     VL + 
Sbjct: 258 GEDYYSVENPANKRRSTLITVLNIS 282

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 38/261 (14%), Positives = 73/261 (27%), Gaps = 43/261 (16%)

Query: 557 QAPLFIERFEEK-TVKEKGTIRLMA-KVKASPAP-SIVWFRNNKPLLSSPKKREIFDGEN 613
           +A    ER E+   V     I +    +  +    +I W++++     S ++        
Sbjct: 2   EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
             L    A  E D+G Y  V  N              VE       N+  I +  +    
Sbjct: 62  EKLWFVPAKVE-DSGHYYCVVRNSSYCLRIKISAKF-VENEPNLCYNAQAIFKQKLP--- 116

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL-VKKGEDLKIEVRFKALPPPK------- 725
                  + +  +  P       +    P++   K  + L ++    +    +       
Sbjct: 117 ------VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVA 170

Query: 726 ----------AEWTVNGT---------VIVPSKRVKGKAEFIKKLDD-LEVKERENAVLE 765
                     A +T  G           I   +    +   +   ++ +EV       L 
Sbjct: 171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLI 230

Query: 766 VEVTSD-KADVKWFKNNSLIK 785
             VT        W  N S+I 
Sbjct: 231 CNVTGQLSDIAYWKWNGSVID 251

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            P   S   + +  +  S++ L   +         W +NG  + E D V+  D   + + 
Sbjct: 208 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 267

Query: 71  --------VSIVTIKSIKKR-EEGVYTVVAKNREGEAKMDIPVKV 106
                   ++++ I  I+ R  +  +T  AKN  G     I +  
Sbjct: 268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score =  117 bits (294), Expect = 3e-31
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 309 NKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKT 368
           +   +  ++A L V     +F + L + E  E   AVL  E+ S  A V+W+K  + ++ 
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLRD 60

Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
             + ++ + G   +L IR +   D GEY C    + TSA L V  +P   S
Sbjct: 61  GDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAMLTVRAMPSGPS 111

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score =  115 bits (291), Expect = 9e-31
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 398 CSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAF 457
            S     TSA L V  LP + +  L++ + +    A    EL+   A V+W+K  + +  
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELS-KMAPVEWWKGHETLRD 60

Query: 458 SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
            +  +L  DG + +L I     EDAGEY C  G      + A LTV A     
Sbjct: 61  GDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE---RTSAMLTVRAMPSGP 110

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 76.6 bits (189), Expect = 5e-17
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 21/127 (16%)

Query: 93  NREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK 152
           +     +    + V   +       E L +   TEG +AVL  ++       VEW+K  +
Sbjct: 2   SSGSSGRTSAMLTV---RALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHE 56

Query: 153 LIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESK 209
            ++D     +  +     L +     +D G Y        G   ++A L V         
Sbjct: 57  TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTV--------- 103

Query: 210 ETPPSPP 216
              PS P
Sbjct: 104 RAMPSGP 110

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTL 292
               E L +   TEG +AVL  ++       VEW+K  + ++D     +  +     L +
Sbjct: 20  IKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQI 77

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
                +D G Y        G   ++A L V 
Sbjct: 78  RGLVAEDAGEYLCMC----GKERTSAMLTVR 104

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
              F E    +   E  T  L  + + S    + W++ ++ L    +     DG    L+
Sbjct: 19  PIKFTEGLRNEEATEGATAVL--RCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQ 76

Query: 618 LKEADSETDAGDYKVVATNELGSAT 642
           ++   +E DAG+Y  +   E  SA 
Sbjct: 77  IRGLVAE-DAGEYLCMCGKERTSAM 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
             +P  F++  +   A E +   L   L       + W+   E L++ D           
Sbjct: 16  RALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLRQDGARC 73

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
                + I+ +   + G Y  +       A + +        P  PS
Sbjct: 74  E----LQIRGLVAEDAGEYLCMCGKERTSAMLTV-----RAMPSGPS 111

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           +F + L + E  E   AVL  E+ S  A V+W+K +  ++
Sbjct: 21  KFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLR 59

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  119 bits (301), Expect = 5e-31
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 286
            P I+E   D+ +++GE A L+ +  G P+P +EWYK G+ ++         R +    +
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 287 THTLTLIQCSTK--DKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKEREN 343
              L ++       D+G Y     N  G   S  A+L V   + +F +   D+ V   E 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128

Query: 344 AVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL- 400
           AV+E +      +  + W KDG  +    +    + G    L+I      D G+Y C   
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGT 185

Query: 401 ----PDQETSAELNVVELPPEISVPLQ 423
                 +   AEL V+E  P       
Sbjct: 186 NMVGERESEVAELTVLE-RPSFVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  113 bits (284), Expect = 1e-28
 Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 13/198 (6%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS- 69
            PP   +    +   +    TL  +    P P + WY  GE ++   +   S +  + S 
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 70  --YVSIVTIKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSIT 126
             +   +      + +EGVY  VA+N  GEA   D  ++V      +    +   DV + 
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI---LRDDFRQNPSDVMVA 124

Query: 127 EGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSV 183
            GE AV+  Q   G P P + W KDG  +   D +IT       L +      D G+Y  
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR--GGKLMITYTRKSDAGKYVC 182

Query: 184 KVTNKEGTVESA-ANLNV 200
             TN  G  ES  A L V
Sbjct: 183 VGTNMVGERESEVAELTV 200

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  108 bits (272), Expect = 4e-27
 Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 49/235 (20%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 164
            P I+E   D+ +++GE A L+ +  G P+P +EWYK G+ ++         R +    +
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 165 THTLTLIQCSTK--DKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVS 221
              L ++       D+G Y     N  G   S  A+L V                     
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV--------------------- 107

Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK--D 278
                        +    +   DV +  GE AV+  Q   G P P + W KDG  +   D
Sbjct: 108 ----------AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD 157

Query: 279 RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKK 332
            +IT       L +      D G+Y    TN  G  ES  A L V   +  F+K 
Sbjct: 158 ERITIR--GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV-LERPSFVKA 209

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  105 bits (264), Expect = 4e-26
 Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 20/206 (9%)

Query: 318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS------- 369
            +L  +      ++   DL V + E A L  +        ++W+K G+ ++T        
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60

Query: 370 KKVTIEKKGTIRKLLIRNISVHDEGEYTC----SL-PDQETSAELNVVELPPEISVPLQD 424
           + +         +++    S  DEG Y C     L       A L V  L  +      D
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120

Query: 425 VKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDA 482
           V V+  E A  E +  +G     + W KDG  +   +       G   KL+I      DA
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDA 177

Query: 483 GEYSCRVGDT-GDKESK-ATLTVEAP 506
           G+Y C   +  G++ES+ A LTV   
Sbjct: 178 GKYVCVGTNMVGERESEVAELTVLER 203

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 89.5 bits (222), Expect = 2e-20
 Identities = 46/260 (17%), Positives = 81/260 (31%), Gaps = 73/260 (28%)

Query: 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN---- 460
             L   + PP I     D+ VS+ E A+   +   G     ++WYK G+ +   ++    
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRS 59

Query: 461 -VTLSIDG--KKQKLIIFSAGLEDAGEYSC----RVGDTGDKESKATLTVEAPAVEFLTK 513
              L   G     +++       D G Y C     +G+       A+L V          
Sbjct: 60  HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA--VSHDASLEVAILR------ 111

Query: 514 LPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEK 573
                                                          F +   +  V   
Sbjct: 112 ---------------------------------------------DDFRQNPSDVMVAVG 126

Query: 574 GTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 632
               +  +  +  P P+I W ++  PL    ++  I  G+ +I   +    ++DAG Y  
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR----KSDAGKYVC 182

Query: 633 VATNELGSA-THGARVTVDV 651
           V TN +G   +  A +TV  
Sbjct: 183 VGTNMVGERESEVAELTVLE 202

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 49/192 (25%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-----KREIFDGE 612
            P  +E   +  V +     L  K +  P P+I W++  + + +        +  +  G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 613 NIILELKEAD-SETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVH 670
              L +     S  D G Y  VA N LG A +H A + V +                   
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL------------------ 110

Query: 671 HLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR-FKALPPPKAEWT 729
                                         P +V+V  GE   +E +  +  P P   W 
Sbjct: 111 ----------------------RDDFR-QNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147

Query: 730 VNGTVIVPSKRV 741
            +G+ +      
Sbjct: 148 KDGSPLDDKDER 159

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
            +   F +    V         +E +     PEP + W  +G PL + DE +      + 
Sbjct: 109 ILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM 168

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI-PVKVNTGKPEKPSILEP 119
                  I   +K + G Y  V  N  GE + ++  + V     E+PS ++ 
Sbjct: 169 -------ITYTRKSDAGKYVCVGTNMVGERESEVAELTVL----ERPSFVKA 209

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score =  115 bits (289), Expect = 1e-30
 Identities = 35/97 (36%), Positives = 50/97 (51%)

Query: 323 DQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK 382
             G   F + L DLEV E   A L   ++S  A VKW      ++   K ++ ++G + +
Sbjct: 5   SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE 64

Query: 383 LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
           L++RN+   D G Y+CS  DQ TSA L V  LP   S
Sbjct: 65  LVVRNLRPQDSGRYSCSFGDQTTSATLTVTALPSGPS 101

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
             P      L+D++V     A+    L+   A VKW      +   +  +L  +G   +L
Sbjct: 6   SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLEL 65

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
           ++ +   +D+G YSC  GD     + ATLTV A     
Sbjct: 66  VVRNLRPQDSGRYSCSFGDQ---TTSATLTVTALPSGP 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 81.6 bits (202), Expect = 6e-19
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 164
           +G        E L D+ + EG +A L   +    +P V+W     +++      +  E  
Sbjct: 3   SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
              L +     +D GRYS       G   ++A L V            PS P
Sbjct: 62  MLELVVRNLRPQDSGRYSCSF----GDQTTSATLTV---------TALPSGP 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 286
           +G        E L D+ + EG +A L   +    +P V+W     +++      +  E  
Sbjct: 3   SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
              L +     +D GRYS       G   ++A L V 
Sbjct: 62  MLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 67.0 bits (164), Expect = 9e-14
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           GS G +    F E  ++  V E G   L   + +  AP + W   N  L    K     +
Sbjct: 1   GSSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE 59

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSAT 642
           G  + L ++    + D+G Y     ++  SAT
Sbjct: 60  GAMLELVVRNLRPQ-DSGRYSCSFGDQTTSAT 90

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P  F +  K +   E    TL   L +V  P + W Y    L+  D+     +  M    
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE-- 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             + +++++ ++ G Y+    ++   A + +     T  P  PS
Sbjct: 65  --LVVRNLRPQDSGRYSCSFGDQTTSATLTV-----TALPSGPS 101

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           S    G   F + L DLEV E   A L   ++S  A VKW   N++++
Sbjct: 2   SSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLR 49

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  118 bits (297), Expect = 2e-30
 Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 21/209 (10%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT-- 287
            G+ + P I+E   D+ + + E A L+ +V G+P P +EW+KDG+ +   +  S +    
Sbjct: 4   AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63

Query: 288 -----HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKER 341
                   T+     +D G Y     N+ G   S  A+L +   + +F  +  D  V + 
Sbjct: 64  DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKG 123

Query: 342 ENAVLE-VEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISVHDEG 394
           E A+LE        +  + W KDG  +   K ++      +R      LLI N+   DEG
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183

Query: 395 EYTCSL-----PDQETSAELNVVELPPEI 418
            Y C         + + A+L +V++    
Sbjct: 184 NYKCIAQNLVGTRESSYAKL-IVQVKAAA 211

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  116 bits (293), Expect = 6e-30
 Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 23/218 (10%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P   +    +  ++N   TL  ++   PEP + W+ +GEP+   ++     Q    +  
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
              T++  K+++ G Y  VAKNR G+A      +++   + +         D  + +GE+
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD---FRVEPKDTRVAKGET 125

Query: 131 AVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKN--------THTLTLIQCSTKDKGRY 181
           A+L      G P P + W KDG  + D +  S              L +      D+G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185

Query: 182 SVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPY 218
                N  GT ES+ A L V         +   +   +
Sbjct: 186 KCIAQNLVGTRESSYAKLIV---------QVKAAAHHH 214

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  115 bits (290), Expect = 2e-29
 Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 50/243 (20%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT-- 165
            G+ + P I+E   D+ + + E A L+ +V G+P P +EW+KDG+ +   +  S +    
Sbjct: 4   AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63

Query: 166 -----HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYV 219
                   T+     +D G Y     N+ G   S  A+L +                   
Sbjct: 64  DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI------------------- 104

Query: 220 VSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLS-VQVGGEPSPKVEWYKDGKLIKD 278
                          +        D  + +GE+A+L      G P P + W KDG  + D
Sbjct: 105 ------------AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDD 152

Query: 279 RQITSEKN--------THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEF 329
            +  S              L +      D+G Y     N  GT ES+ A L V Q KA  
Sbjct: 153 LKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV-QVKAAA 211

Query: 330 IKK 332
              
Sbjct: 212 HHH 214

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  108 bits (270), Expect = 1e-26
 Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 19/210 (9%)

Query: 318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT----SKKV 372
           A L         I+   DL VK+ E A L  +V    +  ++WFKDG+ + T    S +V
Sbjct: 1   APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60

Query: 373 TIEKKGTIRKLLIRNISVHDEGEYTC-----SLPDQETSAELNVVELPPEISVPLQDVKV 427
             +         ++     D GEY C             A L +  L  +  V  +D +V
Sbjct: 61  QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRV 120

Query: 428 SRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ-----KLIIFSAGLE 480
           ++ E A  E    KG     + W KDG  +   + ++     + +      L+I +    
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180

Query: 481 DAGEYSCRVG-DTGDKESK-ATLTVEAPAV 508
           D G Y C      G +ES  A L V+  A 
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 72/277 (25%)

Query: 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN---- 460
           A L      P I     D+ V ++E A+   ++  G     ++W+KDG+ ++ +E     
Sbjct: 1   APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHR 59

Query: 461 VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLV 520
           V            +     +D GEY C        +++    V   A             
Sbjct: 60  VQFKDGALFFYRTMQGKKEQDGGEYWCVA------KNRVGQAVSRHAS------------ 101

Query: 521 PHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM- 579
                           +Q+  L                  F    ++  V +  T  L  
Sbjct: 102 ----------------LQIAVL---------------RDDFRVEPKDTRVAKGETALLEC 130

Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE---LKEAD-SETDAGDYKVVAT 635
              K  P P+++W ++  PL               I++   L  ++    D G+YK +A 
Sbjct: 131 GPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190

Query: 636 NELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHH 671
           N +G+  +  A++ V V    +   +      +H HH
Sbjct: 191 NLVGTRESSYAKLIVQV----KAAAH------HHHHH 217

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 73.0 bits (179), Expect = 1e-14
 Identities = 45/195 (23%), Positives = 67/195 (34%), Gaps = 46/195 (23%)

Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF- 609
           PL    Q+P  IE   +  VK+     L  KV+  P P+I WF++ +P+ ++ KK     
Sbjct: 2   PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61

Query: 610 --DGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDR 666
             DG        +   E D G+Y  VA N +G A +  A + +    V R          
Sbjct: 62  FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI---AVLRDDFRV----- 113

Query: 667 NHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE-VRFKALPPPK 725
                                             P +  V KGE   +E    K +P P 
Sbjct: 114 ---------------------------------EPKDTRVAKGETALLECGPPKGIPEPT 140

Query: 726 AEWTVNGTVIVPSKR 740
             W  +G  +   K 
Sbjct: 141 LIWIKDGVPLDDLKA 155

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLE-VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
           +   F  + K     +     LE      +PEP L+W  +G PL +   + F   S +  
Sbjct: 107 LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI 166

Query: 70  YVSIV-TIKSIKKREEGVYTVVAKNREGEAK---MDIPVKVNTGKPEKP 114
                  I +++  +EG Y  +A+N  G  +     + V+V        
Sbjct: 167 VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  117 bits (294), Expect = 2e-30
 Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 46/221 (20%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTL 170
           +P I+     +         L   +       +   W K+G  +   +     +     +
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEYRI 60

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT 230
            +   +D G Y   V +     ++ A + V                              
Sbjct: 61  NKPRAEDSGEYHC-VYHFVSAPKANATIEVK----------------------------- 90

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR--------QIT 282
                P I       +  EG+ A++  +  G P P+  W K    + +          I 
Sbjct: 91  ---AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII 147

Query: 283 SEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
           +++N   L ++      D G Y    TN  G+   +  L V
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  114 bits (288), Expect = 2e-29
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 25/200 (12%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP--DLLWYYNGEPLQETDEVVFSDQSDMHS 69
            P      + +  +    VTL+  L +         W  NG  L  T +         ++
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK---------NA 53

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
                 I   +  + G Y  V  +     K +  ++V       P I       +  EG+
Sbjct: 54  SNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK----AAPDITGHKRSENKNEGQ 108

Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDR--------QITSEKNTHTLTLIQCSTK-DKGR 180
            A++  +  G P P+  W K    + +          I +++N   L ++      D G 
Sbjct: 109 DAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168

Query: 181 YSVKVTNKEGTVESAANLNV 200
           Y    TN  G+   +  L V
Sbjct: 169 YECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  113 bits (283), Expect = 7e-29
 Identities = 38/246 (15%), Positives = 64/246 (26%), Gaps = 67/246 (27%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL----VKWYKDGKEIAFSENVTLSIDGKKQ 470
            P I    + +        + +  LT   +       W K+G E+  +       +    
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGVELTATRK-----NASNM 56

Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
           +  I     ED+GEY C        ++ AT+ V+A                         
Sbjct: 57  EYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAA------------------------ 92

Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
                                       P        +   E     +  K    P P  
Sbjct: 93  ----------------------------PDITGHKRSENKNEGQDAMMYCKSVGYPHPEW 124

Query: 591 VWFRNNKPLLSSPKKRE-----IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
           +W +    +             I       L +       D G+Y+  ATN +GSA+   
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184

Query: 646 RVTVDV 651
            + V V
Sbjct: 185 VLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  109 bits (275), Expect = 8e-28
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 17/190 (8%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTL 292
           +P I+     +         L   +       +   W K+G  +   +     +     +
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEYRI 60

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS 352
            +   +D G Y   V +     ++ A + V +   +           E ++A++  +   
Sbjct: 61  NKPRAEDSGEYHC-VYHFVSAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKSVG 118

Query: 353 D-KADVKWFKDGQEI-----KTSKKVTIEKKGTIRKLLIRNISV-HDEGEYTC----SLP 401
               +  W K    +      +S +  I  K    +L I N+ +  D GEY C    S+ 
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178

Query: 402 DQETSAELNV 411
               S  L V
Sbjct: 179 SASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =   99 bits (249), Expect = 3e-24
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 22/190 (11%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKA---DVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
            +   + +         L+  +TS         W K+G E+  ++K       +  +  I
Sbjct: 6   IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-----ASNMEYRI 60

Query: 386 RNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG 442
                 D GEY C    +   + +A + V    P+I+   +    +  + A    + + G
Sbjct: 61  NKPRAEDSGEYHCVYHFVSAPKANATIEVKA-APDITGHKRSENKNEGQDAMMYCK-SVG 118

Query: 443 DAL--VKWYKDGKEIAFSEN------VTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTG 493
                  W K    +    +        ++ +   +  I+     ED GEY C      G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178

Query: 494 DKESKATLTV 503
                  L V
Sbjct: 179 SASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 51/185 (27%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENII 615
            P  +   E         + L   + +S        W +N   L ++ K     +  N+ 
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NASNME 57

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
             + +  +E D+G+Y  V  + + +    A + V                          
Sbjct: 58  YRINKPRAE-DSGEYHCVY-HFVSAPKANATIEVKA------------------------ 91

Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
                            AP I      E    +G+D  +  +    P P+  W      +
Sbjct: 92  -----------------APDITGHKRSEN-KNEGQDAMMYCKSVGYPHPEWMWRKKENGV 133

Query: 736 VPSKR 740
                
Sbjct: 134 FEEIS 138

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
             P  +   +     E  +  +  + V  P P+ +W      + E           ++  
Sbjct: 91  AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE 150

Query: 71  -VSIVTIKSIKKRE-EGVYTVVAKNREG--EAKMDIPVKV 106
             + + I +++  E  G Y   A N  G       + V+V
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  121 bits (305), Expect = 4e-30
 Identities = 65/422 (15%), Positives = 129/422 (30%), Gaps = 90/422 (21%)

Query: 22  VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL-------------QETDEVVFSDQSDMH 68
           V  ++   V L             W  + +                + ++   S +S   
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                + IK++K  +   Y    ++++ E ++ +   +               D  + +G
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL-LVFGL----TANS-------DTHLLQG 111

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
           +S  L+++     SP V+              + +   TL++ Q   +D G ++  V   
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 164

Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
           +  VE   ++ V  +          +       E + ++ +           PL      
Sbjct: 165 QKKVEFKIDIVVLAF--------QKASSIVYKKEGEQVEFSF----------PLAFTVEK 206

Query: 249 EGESAVLSVQVGGEPSPKV----EWYKDGKLIK-----DRQITSEKNTHTLTLIQCSTK- 298
              S  L  Q     S K     +       +K      +    +K    LTL Q   + 
Sbjct: 207 LTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQY 266

Query: 299 -DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV---TSDK 354
              G  ++ +  K G +    NL V             +   + +   L  EV   TS K
Sbjct: 267 AGSGNLTLALEAKTGKLHQEVNLVV-------------MRATQLQK-NLTCEVWGPTSPK 312

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD-QETSAELNVVE 413
             +    + +E K SK           +     +   + G + C L D  +   E N+  
Sbjct: 313 LMLSLKLENKEAKVSK-----------REKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361

Query: 414 LP 415
           LP
Sbjct: 362 LP 363

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  111 bits (277), Expect = 2e-26
 Identities = 53/423 (12%), Positives = 123/423 (29%), Gaps = 107/423 (25%)

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 162
           V   +G++  L+     + S +  W    ++                       R+   +
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
           +    L +     +D   Y  +V +++  V+                             
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ----------------------------- 94

Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
           L    +               D  + +G+S  L+++     SP V+              
Sbjct: 95  LLVFGL----TANS-------DTHLLQGQSLTLTLESPPGSSPSVQCRSPRG-------K 136

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD--QGKAEFIKKLDDLEVKE 340
           + +   TL++ Q   +D G ++  V   +  VE   ++ V   Q  +  + K +  +V+ 
Sbjct: 137 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEF 196

Query: 341 RENAVLEVEVTSDKADVKWFKDG-------------------QEIKTSKKVTIEKKGTIR 381
                  VE  +   ++ W  +                    + +    K+ + KK  + 
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256

Query: 382 -KLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT 440
             L          G  T +L  +       V  +    +   +++        S ++ L+
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLS 316

Query: 441 KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKAT 500
                     + KE   S+           +         +AG + C + D+G    ++ 
Sbjct: 317 -------LKLENKEAKVSK-----------REKAVWVLNPEAGMWQCLLSDSGQVLLESN 358

Query: 501 LTV 503
           + V
Sbjct: 359 IKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 82.5 bits (203), Expect = 5e-17
 Identities = 54/453 (11%), Positives = 116/453 (25%), Gaps = 143/453 (31%)

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 284
           V   +G++  L+     + S +  W    ++                       R+   +
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
           +    L +     +D   Y  +V +++  V+              +    D  + + ++ 
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL---------LVFGLTANSDTHLLQGQSL 114

Query: 345 VLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----S 399
            L +E        V+      +     K           L +  + + D G +TC    +
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQN 164

Query: 400 LPDQETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAF 457
               E   ++ V+       I    +  +V      +F +E   G   + W  +    + 
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS- 223

Query: 458 SENVTLSIDGKKQ---------------------KLIIFSAGLEDAGEYSCRVGDTGDKE 496
              +T  +  K+                       L         +G             
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL----------- 272

Query: 497 SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG 556
              TL +EA                  G    +V L          NL    TC +  P 
Sbjct: 273 ---TLALEAKT----------------GKLHQEVNLVVMRATQLQKNL----TCEVWGP- 308

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
                                       SP   +     NK    S +++         +
Sbjct: 309 ---------------------------TSPKLMLSLKLENKEAKVSKREK--------AV 333

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +       +AG ++ + ++  G     + + V
Sbjct: 334 WV----LNPEAGMWQCLLSDS-GQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 69.1 bits (168), Expect = 1e-12
 Identities = 40/332 (12%), Positives = 84/332 (25%), Gaps = 105/332 (31%)

Query: 21  PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK 80
             +  +   +TL +       P +          +                  +++  ++
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------KTLSVSQLE 150

Query: 81  KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 140
            ++ G +T      + + +  I + V   +            V   EGE    S  +   
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-------ASSIVYKKEGEQVEFSFPLAFT 203

Query: 141 -----PSPKVEWYKDGKLIKDRQIT---------------------SEKNTHTLTLIQCS 174
                 S ++ W  +        IT                      +K    LTL Q  
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263

Query: 175 TK--DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGK 232
            +    G  ++ +  K G +    NL V                         ++     
Sbjct: 264 PQYAGSGNLTLALEAKTGKLHQEVNLVV-------------------------MRA---- 294

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTL 290
                                 L+ +V G  SPK+      + K          K +   
Sbjct: 295 ----------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEA--------KVSKRE 330

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             +     + G +   +++  G V   +N+ V
Sbjct: 331 KAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score =  112 bits (282), Expect = 1e-29
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
            F + L   E  E   A L+ E+ S  A V+W K  + ++   + ++++ GT  +L I +
Sbjct: 10  RFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHD 68

Query: 388 ISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDV 425
           +SV D GEY+C    + TSA L V  LP   +      
Sbjct: 69  LSVADAGEYSCMCGQERTSATLTVRALPARFTEGSGPS 106

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score =  105 bits (263), Expect = 4e-27
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
             P   +  L+  + S    A+ + EL+K  A V+W K  + +      +L  DG + +L
Sbjct: 6   SGPARFTQDLKTKEASEGATATLQCELSK-VAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVT 518
            I    + DAGEYSC     G + + ATLTV A    F       +
Sbjct: 65  QIHDLSVADAGEYSCMC---GQERTSATLTVRALPARFTEGSGPSS 107

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 286
           +G        + L     +EG +A L  ++       VEW K  + ++D     +  +  
Sbjct: 3   SGSSGPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGT 60

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD 335
              L +   S  D G YS       G   ++A L V    A F +    
Sbjct: 61  RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGP 105

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 81.7 bits (202), Expect = 8e-19
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 164
           +G        + L     +EG +A L  ++       VEW K  + ++D     +  +  
Sbjct: 3   SGSSGPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGT 60

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
              L +   S  D G YS       G   ++A L V     + ++ + PS
Sbjct: 61  RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           GS G +    F +  + K   E  T  L  + + S    + W +  + L    +     D
Sbjct: 1   GSSGSSGPARFTQDLKTKEASEGATATL--QCELSKVAPVEWKKGPETLRDGGRYSLKQD 58

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSAT 642
           G    L++ +     DAG+Y  +   E  SAT
Sbjct: 59  GTRCELQIHDLSVA-DAGEYSCMCGQERTSAT 89

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P  F++  K   A E +  TL+  L       + W    E L++                
Sbjct: 8   PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCE-- 63

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
             + I  +   + G Y+ +       A + +       +       E     S
Sbjct: 64  --LQIHDLSVADAGEYSCMCGQERTSATLTV-------RALPARFTEGSGPSS 107

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
            F + L   E  E   A L+ E+ S  A V+W K    ++
Sbjct: 10  RFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLR 48

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  122 bits (306), Expect = 3e-29
 Identities = 69/583 (11%), Positives = 154/583 (26%), Gaps = 109/583 (18%)

Query: 20  KPVYAEENSEVTLE--VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY---VSI- 73
           + V + E + V++       +V      ++           ++ S+      Y    ++ 
Sbjct: 8   EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67

Query: 74  ---------VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
                    V I  + + + G Y              +   V+    + P +L      +
Sbjct: 68  NFPENGTFVVNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYT 123

Query: 125 ITEGESAVLSVQVGGEPSPKVE-WYKDGKLIKDRQITSEKNTH----------------- 166
           +  G +  ++     E + K +  YK   L     I S    +                 
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183

Query: 167 --TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
             ++ + Q    D G+Y  +  +   + +  A+L V            P P         
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV----------LKPEPELVYEDLRG 233

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK--LIKDRQIT 282
           ++  +               +       A    +     +  V     GK     + +I 
Sbjct: 234 SVTFHC-------------ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280

Query: 283 ----SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD---D 335
                +  + ++ +     +D GRY     +     E +          E          
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTV 340

Query: 336 LEVKERENAVLEVEVTSD-KADVK-WFKDGQEIKTSKKVTIEKKGTIRK----------- 382
           ++     +  +           +K W            + ++ +G ++            
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400

Query: 383 -------LLIRNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVPLQDVKVSRDEK 432
                  +++  ++  D G Y C         T+ E+ ++E  P + VP  +V     E 
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP-GNVTAVLGET 459

Query: 433 ASFEIELTKGD-----ALVKWYKDGKEIAFSEN-------VTLSIDGKKQKLIIFSAGLE 480
                              KW   G +   S++       V    + +   L +      
Sbjct: 460 LKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA 519

Query: 481 DAGEYSCRVGD--TGDKESKATLTVEAPAVEFLTKLPSVTLVP 521
           D G Y C V       + +   + VE         +       
Sbjct: 520 DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADA 562

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 89.7 bits (221), Expect = 1e-18
 Identities = 78/634 (12%), Positives = 146/634 (23%), Gaps = 169/634 (26%)

Query: 113 KPSILEPLHDVSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKDRQITS-------- 161
           K  I  P  +V+  EG S  ++            +  W + G       + S        
Sbjct: 1   KSPIFGP-EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSK 59

Query: 162 -----------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE 210
                      E  T  + + Q S  D GRY   +                         
Sbjct: 60  YAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRG------------------- 100

Query: 211 TPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE-W 269
                         +  V+    + P +L      ++  G +  ++     E + K +  
Sbjct: 101 -------------LSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSL 147

Query: 270 YKDGKLIKDRQITSEKNTH-------------------TLTLIQCSTKDKGRYSVKVTNK 310
           YK   L     I S    +                   ++ + Q    D G+Y  +  + 
Sbjct: 148 YKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDD 207

Query: 311 EGTVESAANLNVDQGKAEFIKKLD--------DLEVKERENAVLEVEVTSDKA-DVKWFK 361
             + +  A+L V + + E + +           L  +    A      +S +  DV    
Sbjct: 208 SNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNT 267

Query: 362 DGQEIKTSK-KVTIEKKGT--IRKLLIRNISVHDEGEYTC-------SLPDQETSAELNV 411
            G+     + ++ +  +       ++I  +   D G Y C               A    
Sbjct: 268 LGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLF 327

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSENVTLSIDGKK 469
           V     I      VK       +      + ++     W            + +  +G  
Sbjct: 328 VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWV 387

Query: 470 QK------------------LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFL 511
           +                   +I+      DAG Y C         +   + +       L
Sbjct: 388 KAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEP-NL 446

Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
               +VT                                                     
Sbjct: 447 KVPGNVT-AVLGETLKVPCHFPC------------------------------------- 468

Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-----IFDGENIILELKEAD-SET 625
                    K  +       W       L S  +         D  + ++ L     +  
Sbjct: 469 ---------KFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA 519

Query: 626 DAGDYK-VVATNELGSATHGARVTVDVEKVGRPP 658
           D G Y   V        T    V V+  K     
Sbjct: 520 DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSR 553

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 85.8 bits (211), Expect = 1e-17
 Identities = 45/376 (11%), Positives = 100/376 (26%), Gaps = 74/376 (19%)

Query: 21  PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK 80
            +  E  +      R  +    D++    G+     +  +             V I  ++
Sbjct: 240 ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI-LLNPQDKDGSFSVVITGLR 298

Query: 81  KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 140
           K + G Y   A +     +            E+ +I      V    G S  +      +
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRK 358

Query: 141 PSPKVEWYKDGKLIKDRQITSEKNTH----------------------TLTLIQCSTKDK 178
            S  ++++   +  ++ +     ++                       T+ L Q +++D 
Sbjct: 359 ESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDA 418

Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
           G Y       +    +   + +   EP                                 
Sbjct: 419 GFYWCLTNG-DTLWRTTVEIKIIEGEPNLKVPGN-------------------------- 451

Query: 239 LEPLHDVSITEGESAVLSVQVG----GEPSPKVEWYKDGKLIKDRQITSE---------- 284
                 V+   GE+  +                +W   G      Q              
Sbjct: 452 ------VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505

Query: 285 KNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN 343
               +LTL   +  D+G Y   V         +A  + V++ KA   +   D+ + + + 
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSR---DVSLAKADA 562

Query: 344 AVLEVEVTSDKADVKW 359
           A  E  + S   +++ 
Sbjct: 563 APDEKVLDSGFREIEN 578

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 65.8 bits (159), Expect = 3e-11
 Identities = 38/260 (14%), Positives = 75/260 (28%), Gaps = 36/260 (13%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY--NGEPLQETDEVVFSDQSDMHS 69
             T  +    V     S V +           + ++    G        +V S+      
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390

Query: 70  Y---VSI----------VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
           Y   +S+          V +  +  R+ G Y  +        +  + +K+  G+P     
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD-TLWRTTVEIKIIEGEP----N 445

Query: 117 LEPLHDVSITEGESAVLSVQVG----GEPSPKVEWYKDGKLIKDRQITSE---------- 162
           L+   +V+   GE+  +                +W   G      Q              
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505

Query: 163 KNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
               +LTL   +  D+G Y   V         +A  + V+  +   S++   +       
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPD 565

Query: 222 ELDTLQVNTGKPEKPSILEP 241
           E   L     + E  +I +P
Sbjct: 566 E-KVLDSGFREIENKAIQDP 584

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  120 bits (301), Expect = 4e-29
 Identities = 61/475 (12%), Positives = 129/475 (27%), Gaps = 72/475 (15%)

Query: 52  PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
           P+    E     +  +    +    +    +E+      +   +G++     + V    P
Sbjct: 28  PMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYW-TP 86

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHTL 168
           E+  +           G++  L  QV G     +  V   +  K +K      E    T 
Sbjct: 87  ERVEL--APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTT 144

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
           T++         +S +              N       ++   P +PP            
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP------------ 192

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE---PSPKVEWYKDGKLIKDRQITSEK 285
                      + +    +       +   + G       +V      + +         
Sbjct: 193 -----------QLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241

Query: 286 NTHTLTLIQCSTKDKGRYSV--KVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN 343
           +      +  + +D+G   +   V     + E+   + +          L   EV E   
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-YSFPAPNVILTKPEVSEGTE 300

Query: 344 AVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS---- 399
             ++ E    +A V              V  +  G   +LL++     +   ++CS    
Sbjct: 301 VTVKCEAHP-RAKVTLN----------GVPAQPLGPRAQLLLKATPEDNGRSFSCSATLE 349

Query: 400 ----LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIE-LTKGD--ALVKWYKDG 452
               L  +  + EL V+   P +         +  E +         G+    +K  KDG
Sbjct: 350 VAGQLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 408

Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
                                  +   +  G Y CR     G+   + T+ V +P
Sbjct: 409 TFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  120 bits (301), Expect = 5e-29
 Identities = 65/553 (11%), Positives = 119/553 (21%), Gaps = 138/553 (24%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
            V +  G S +++     +    +       L K   +    N     L      +  + 
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIET--PLPKKELLLPGNNRKVYELSNVQ--EDSQP 63

Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
                  +G   +   L V                                PE+  +   
Sbjct: 64  MCYSNCPDGQSTAKTFLTVYW-----------------------------TPERVEL--A 92

Query: 242 LHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
                   G++  L  QV G     +  V   +  K +K      E    T T++     
Sbjct: 93  PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH 152

Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKL--------DDLEVKERENAVLEVEV 350
               +S +              N           L            ++      +   +
Sbjct: 153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL 212

Query: 351 TSD----KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPD 402
                  +A V      Q +  +         +       +++  DEG         L +
Sbjct: 213 DGLFPVSEAQVHLALGDQRLNPT---VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN 269

Query: 403 QETSAELNV-VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENV 461
           Q       V +   P  +V L   +VS   + + + E     A V               
Sbjct: 270 QSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCE-AHPRAKVTLNG-VPAQPLGPRA 327

Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSCRV-----GDTGDKESKATLTVEAPAVEFLTKLPS 516
            L +    +         ++   +SC       G    K     L V             
Sbjct: 328 QLLLKATPE---------DNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR-------- 370

Query: 517 VTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTI 576
                                            CP                 T  E    
Sbjct: 371 ----------------------------LDERDCP--------------GNWTWPENSQQ 388

Query: 577 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 636
             M +   +P P +   ++    L   +   +              +    G Y   A +
Sbjct: 389 TPMCQAWGNPLPELKCLKDGTFPLPIGESVTV--------------TRDLEGTYLCRARS 434

Query: 637 ELGSATHGARVTV 649
             G  T    V V
Sbjct: 435 TQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 93.8 bits (232), Expect = 3e-20
 Identities = 58/518 (11%), Positives = 114/518 (22%), Gaps = 134/518 (25%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 303
            V +  G S +++     +    +       L K   +    N     L      +  + 
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIET--PLPKKELLLPGNNRKVYELSNVQ--EDSQP 63

Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS----DKADVKW 359
                  +G   +   L V                   +N  L  +V          V  
Sbjct: 64  MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL 123

Query: 360 FKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC------------SLPDQETSA 407
            +  +E+K         +       +     H    ++C               +     
Sbjct: 124 LRGEKELKRE---PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPY 180

Query: 408 ELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG----DALVKWYKDGKEIAFSENVTL 463
           +L    LP      +    +  D + +    L       +A V      + +  +  VT 
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTY 238

Query: 464 SIDGKKQKLII-FSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVP 521
             D    K  +  +A  E     +C V      +E+  T+T+ +                
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--------------- 283

Query: 522 HLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
                                                P       +  V E   + +  +
Sbjct: 284 -------------------------------------PAPNVILTKPEVSEGTEVTVKCE 306

Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
                  ++                    G    L LK A  E +   +   AT E+   
Sbjct: 307 AHPRAKVTLNGVPAQPL------------GPRAQLLLK-ATPEDNGRSFSCSATLEVAGQ 353

Query: 642 THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPP 701
                 T ++                                      V   P +D    
Sbjct: 354 LIHKNQTRELR-------------------------------------VLYGPRLDERDC 376

Query: 702 PEVL-VKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
           P      +        +    P P+ +   +GT  +P 
Sbjct: 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 414

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 89.9 bits (222), Expect = 4e-19
 Identities = 43/316 (13%), Positives = 79/316 (25%), Gaps = 61/316 (19%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVA---VPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           P T  +   P   E +++ T+   L     V E  +      + L           +  +
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN-------PTVTYGN 240

Query: 69  SYVSIVTIKSIKKREEGVYTVV--AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
              S     S+   +EG   +           +    V +       P+    L    ++
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY----SFPAPNVILTKPEVS 296

Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
           EG    +  +        +       L    Q         L L      +   +S   T
Sbjct: 297 EGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---------LLLKATPEDNGRSFSCSAT 347

Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
            +        N                            L+V    P       P  + +
Sbjct: 348 LEVAGQLIHKNQTR------------------------ELRV-LYGPRLDERDCPG-NWT 381

Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
             E        Q  G P P+++  KDG                   +  +   +G Y  +
Sbjct: 382 WPENSQQTPMCQAWGNPLPELKCLKDGTF----------PLPIGESVTVTRDLEGTYLCR 431

Query: 307 VTNKEGTVESAANLNV 322
             + +G V     +NV
Sbjct: 432 ARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 19/98 (19%)

Query: 12  PPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
            P   ++  P      ENS+ T   +    P P+L    +G       E V   +     
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDL--- 424

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
                         EG Y   A++ +GE   ++ V V 
Sbjct: 425 --------------EGTYLCRARSTQGEVTREVTVNVL 448

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  112 bits (282), Expect = 9e-29
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 46/217 (21%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTL 168
             ++     +++++G+   L+  V G   P ++W KDG ++++       ++ +     L
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
           +L      D GRY  +V +   T  S    L V+                          
Sbjct: 63  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE-------------------------- 96

Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKN 286
                   P       D+++       LS +  G P P  + W++    I          
Sbjct: 97  ------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI------GGPA 144

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNV 322
                L          +S +  N +G   S  A +++
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  111 bits (278), Expect = 3e-28
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 18/171 (10%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTL 290
             ++     +++++G+   L+  V G   P ++W KDG ++++       ++ +     L
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVE 349
           +L      D GRY  +V +   T  S    L V +G   F  +  DL V       L  E
Sbjct: 63  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTV-EGVPFFTVEPKDLAVPPNAPFQLSCE 121

Query: 350 VTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
                    + W++   +I                 ++    V     ++C
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGP---------APSPSVLNVTGVTQSTMFSC 163

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  106 bits (267), Expect = 9e-27
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 15/192 (7%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                     +   +   V L   +  + EPD+ W  +G  +Q  D++          ++
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ--HWI 59

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHDVSITEGES 130
             +++KS+++ + G Y    ++         + + V       P       D+++     
Sbjct: 60  GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE----GVPFFTVEPKDLAVPPNAP 115

Query: 131 AVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
             LS +  G P P  + W++    I               L          +S +  N +
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKI------GGPAPSPSVLNVTGVTQSTMFSCEAHNLK 169

Query: 190 GTVES-AANLNV 200
           G   S  A +++
Sbjct: 170 GLASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 96.8 bits (241), Expect = 3e-23
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI--EKKGTIRKLL 384
           + +     L V + +   L   V    + D++W KDG  ++   ++ I   ++  I  L 
Sbjct: 4   KLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63

Query: 385 IRNISVHDEGEYTC---SLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKASFEIELT 440
           ++++   D G Y C      + E S  + + VE  P  +V  +D+ V  +       E  
Sbjct: 64  LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAV 123

Query: 441 KGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKE 496
            G      + W++   +I                 ++   G+  +  +SC      G   
Sbjct: 124 -GPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMFSCEAHNLKGLAS 173

Query: 497 SK-ATLTVE 504
           S+ AT+ ++
Sbjct: 174 SRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 86.0 bits (213), Expect = 1e-19
 Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 71/245 (28%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQK- 471
             ++      + VS+ +       +  G     ++W KDG  +   + + + +  +    
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 472 -LIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
            L + S    DAG Y C+V D    + S+   LTVE                        
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV---------------------- 98

Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
                                         P F    ++  V      +L  +    P P
Sbjct: 99  ------------------------------PFFTVEPKDLAVPPNAPFQLSCEAVGPPEP 128

Query: 589 -SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647
            +IVW+R    +        + +   +          T +  +   A N  G A+     
Sbjct: 129 VTIVWWRGTTKIGGPAPSPSVLNVTGV----------TQSTMFSCEAHNLKGLASSRT-A 177

Query: 648 TVDVE 652
           TV ++
Sbjct: 178 TVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 48/186 (25%)

Query: 558 APL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 615
           A L  +    + TV +   ++L   V+    P I W ++   + +  +       ++ I 
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 616 -LELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
            L LK     +DAG Y     +   +  +    +T                         
Sbjct: 61  FLSLKSV-ERSDAGRYWCQVEDGGETEISQPVWLT------------------------- 94

Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA-EWTVNG 732
                           VE  P      P ++ V      ++       P P    W    
Sbjct: 95  ----------------VEGVPFFT-VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGT 137

Query: 733 TVIVPS 738
           T I   
Sbjct: 138 TKIGGP 143

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  116 bits (292), Expect = 1e-28
 Identities = 55/336 (16%), Positives = 94/336 (27%), Gaps = 64/336 (19%)

Query: 239 LEPLHDVSITEGESAVL-----------SVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
           L+ +  + + E E A +           +          + WY   +     +  + +  
Sbjct: 11  LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70

Query: 288 --------HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEFIKKLDDL 336
                     L        D G Y+  + N     + A  L V   D      +K     
Sbjct: 71  ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130

Query: 337 EVKERENAVLEVEVTSDKAD------VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISV 390
              E     +                + W+    +I+    V  E       L      +
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM----NLSFLIALI 186

Query: 391 HDEGEYTCSLPDQE--------TSAELNVVE-----LPPEISVPLQDVKVSRDEKASFEI 437
            + G YTC +   E         +  + VV      +PP I  P   V   ++      I
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246

Query: 438 E-------LTKGDALVKWYKDGKEIA-------FSENVTLSIDGKK---QKLIIFSAGLE 480
                   L      V W  DGK+          +E+++ S    +   Q L I     E
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306

Query: 481 D-AGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKL 514
           D    Y C      G+    A +  + PA  +  +L
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVEL 342

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  108 bits (270), Expect = 1e-25
 Identities = 49/356 (13%), Positives = 104/356 (29%), Gaps = 64/356 (17%)

Query: 17  KKTKPVYAEENSEVTLEVRLVAV-----------PEPDLLWYYNGEPLQETDEVVFSDQS 65
              + +   E+    ++  L                  L+WY+  +     + + F    
Sbjct: 12  DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71

Query: 66  D-MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
           + +     ++  +     + G YT + +N    +K+  P++V        S ++      
Sbjct: 72  NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKL 131

Query: 125 ITEGESAVL-----SVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 179
             E     +              P + WY     I++      +    L+ +     + G
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM-NLSFLIALISNNG 190

Query: 180 RYSVKVT----NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEK 235
            Y+  VT     +   +     + V             + PP + S  D +         
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKV-------VGSPKNAVPPVIHSPNDHV--------- 234

Query: 236 PSILEPLHDVSITEGESAVLSVQV----GGEPSPKVEWYKDGKLIKD------------- 278
                         GE  ++   V      +   +V W  DGK   D             
Sbjct: 235 --------VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISH 286

Query: 279 RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNVDQGKAEFIKKL 333
            +   E  T  L++ + +++D  R Y     + +G V  AA +        +  +L
Sbjct: 287 SRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVEL 342

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 90.3 bits (223), Expect = 1e-19
 Identities = 48/361 (13%), Positives = 89/361 (24%), Gaps = 81/361 (22%)

Query: 330 IKKLDDLEVKERENAVLEVEV------------TSDKADVKWFKDGQEIKTSKKVTIEKK 377
           +  +  ++V E E A ++  +             S    + W+   Q+    + +     
Sbjct: 11  LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70

Query: 378 GTI-----RKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPL---QDV 425
                     L  R   ++D G YTC    +    + +  L VV+     + P+      
Sbjct: 71  ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130

Query: 426 KVSRDEKASFEIELTKGDAL------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGL 479
                           G         + WY    +I    NV          L    A +
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE----GMNLSFLIALI 186

Query: 480 EDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQ 538
            + G Y+C V      +    T T+    V          +        ++ E       
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE--- 243

Query: 539 VKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP 598
                  ++  C                           +           + W  + K 
Sbjct: 244 -------LLIPC--------------------------TVYFSFLMDSRNEVWWTIDGKK 270

Query: 599 LLSSPKKREIFDGENI----------ILELKEADSETDAGDYKVVATNELGSATHGARVT 648
                    I +  +           IL +K+  SE     Y   A +  G     A+V 
Sbjct: 271 PDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK 330

Query: 649 V 649
            
Sbjct: 331 Q 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 77.6 bits (190), Expect = 2e-15
 Identities = 58/352 (16%), Positives = 96/352 (27%), Gaps = 90/352 (25%)

Query: 393 EGEYTCSLPDQETSAELNVVELPP-EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKD 451
           E    C     +T  ++ V E  P  I  PL +  +  +   +    LT     + WY  
Sbjct: 1   EPSERCDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLT-----LIWYWT 55

Query: 452 GKEIAFSENVTLS-----IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
            ++    E +        I  +K  L      L D G Y+C +   T   +    L V  
Sbjct: 56  RQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQ 115

Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
               F + +       ++     ++                  TCP              
Sbjct: 116 KDSCFNSPMKLPVHKLYIEYGIQRI------------------TCP-------------- 143

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
                       +     +S  P+I W+     +        I +G N  L    A    
Sbjct: 144 -----------NVDGYFPSSVKPTITWYMGCYKI--QNFNNVIPEGMN--LSFLIALIS- 187

Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD 685
           + G+Y  V T      T     T+ V+ VG P      +          I SP      +
Sbjct: 188 NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPV----------IHSPNDHVVYE 237

Query: 686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKAL--PPPKAEWTVNGTVI 735
            E                    +   +   V F  L     +  WT++G   
Sbjct: 238 KE------------------PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 17/178 (9%), Positives = 39/178 (21%), Gaps = 45/178 (25%)

Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-----LELKEADSETD 626
            +  ++       S   +++W+   +                I      L  +      D
Sbjct: 32  FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN-D 90

Query: 627 AGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDV 686
            G+Y  +  N    +     + V                                    V
Sbjct: 91  TGNYTCMLRNTTYCSKVAFPLEV------------------------------------V 114

Query: 687 EKPVETAPVIDPPPPPEVLVKKGEDL---KIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
           +K       +  P     +    + +    ++  F +   P   W +    I     V
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV 172

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score =  109 bits (273), Expect = 1e-28
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 326 KAEFIKKLDD-LEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
            A F K LD   +V +       VE+   K +VKW+K+GQEI+ S K   E KG  R L 
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66

Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
           I N  + D+ EY  +  D++ S EL V   P 
Sbjct: 67  INNCQMTDDSEYYVTAGDEKCSTELFVRSGPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 415 PPEISVPLQD-VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
               +  L    +V +  +  F +EL      VKWYK+G+EI  S        G ++ L 
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66

Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
           I +  + D  EY       GD++    L V + 
Sbjct: 67  INNCQMTDDSEYYVTA---GDEKCSTELFVRSG 96

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 17/107 (15%)

Query: 112 EKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 167
              +  + L     + +G      V++   P  +V+WYK+G+ I+         +     
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
           L +  C   D   Y V      G  + +  L V        +  P S
Sbjct: 65  LFINNCQMTDDSEYYVTA----GDEKCSTELFV--------RSGPSS 99

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 234 EKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 289
              +  + L     + +G      V++   P  +V+WYK+G+ I+         +     
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           L +  C   D   Y V      G  + +  L V
Sbjct: 65  LFINNCQMTDDSEYYVTA----GDEKCSTELFV 93

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 553 GSPG-QAPLFIERFEEKT-VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           GS G     F +  +    V + G +R + ++ A P   + W++N + +  S K      
Sbjct: 1   GSSGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK 59

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           G   IL +       D  +Y V A    G       + V
Sbjct: 60  GCQRILFINNCQMT-DDSEYYVTA----GDEKCSTELFV 93

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 12  PPTFSKKTKPVY-AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
              F+K   P Y  ++   V   V  +A P+ ++ WY NG+ ++ + + +F  +      
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI- 64

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTG 109
              + I + +  ++  Y V A + +   ++ +    ++G
Sbjct: 65  ---LFINNCQMTDDSEYYVTAGDEKCSTELFVRSGPSSG 100

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 744 KAEFIKKLDD-LEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
            A F K LD   +V +       VE+   K +VKW+KN   I+
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIR 49

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
            +         P   V KG  ++  V   A P  + +W  NG  I PS +  
Sbjct: 5   SSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYI 55

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score =  109 bits (273), Expect = 2e-28
 Identities = 34/98 (34%), Positives = 54/98 (55%)

Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
            G+ E ++ + DL VK  E AV + EV+ +K   KW+K+G E++ SK++TI   G   KL
Sbjct: 6   SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKL 65

Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVP 421
           +I ++   DEG+YT        S    +  L  ++S P
Sbjct: 66  VIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGP 103

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
             E+   + D+ V   E+A F+ E++      KWYK+G E+  S+ +T+S  G+  KL+I
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67

Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLT 512
                ED G+Y+             +  +    ++   
Sbjct: 68  DDVRPEDEGDYTFVP---DGYALSLSAKLNFLEIKVSG 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 164
           +G   +  +L+ + D+++   E AV   +V  E     +WYK+G  ++      I+    
Sbjct: 3   SGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGR 61

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
            H L +     +D+G Y+        +   +A LN    E K S   P S
Sbjct: 62  FHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNF--LEIKVSG--PSS 105

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 286
           +G   +  +L+ + D+++   E AV   +V  E     +WYK+G  ++      I+    
Sbjct: 3   SGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGR 61

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            H L +     +D+G Y+        +   +A LN 
Sbjct: 62  FHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNF 95

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
               ++   + TVK         +V +    +  W++N   +  S +      G    L 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
           + +   E D GDY  V      S +  A++     KV  P 
Sbjct: 67  IDDVRPE-DEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                +    +  +   +   +   V+  +    WY NG  ++ +  +  S     H   
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCE-VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHK-- 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             + I  ++  +EG YT V             +     K   PS
Sbjct: 65  --LVIDDVRPEDEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           S    G+ E ++ + DL VK  E AV + EV+ +K   KW+KN   ++
Sbjct: 2   SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVR 49

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score =  109 bits (273), Expect = 2e-28
 Identities = 27/96 (28%), Positives = 47/96 (48%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
           +      +     E  VL  E+    A+V+W KDG+E+  S  + ++K+ T+R+L++  +
Sbjct: 16  YPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAV 75

Query: 389 SVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQD 424
            + D GEY C + D+  S  + V E P  I      
Sbjct: 76  QLEDSGEYLCEIDDESASFTVTVTEPPVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score =  102 bits (255), Expect = 5e-26
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 406 SAELNVVELPPEISVP--LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTL 463
           S+  +  ++   I  P     V   R E+     EL +  A V+W KDG+E+  S  + L
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLL 61

Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
             +   ++L++ +  LED+GEY C +    D+ +  T+TV  P V  +   PS
Sbjct: 62  QKEDTVRRLVLPAVQLEDSGEYLCEI---DDESASFTVTVTEPPVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEK 163
            T              V+    E  VL+ ++   P  +V W KDG+ +       +  E 
Sbjct: 7   GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED 65

Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
               L L     +D G Y  ++        ++  + V     +     P S
Sbjct: 66  TVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSGPSS 112

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 76.3 bits (188), Expect = 6e-17
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 8/110 (7%)

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEK 285
            T              V+    E  VL+ ++   P  +V W KDG+ +       +  E 
Sbjct: 7   GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED 65

Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD 335
               L L     +D G Y  ++        ++  + V +     I     
Sbjct: 66  TVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
                ++              + L  ++   P   + W ++ + ++ SP      +    
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68

Query: 615 ILELKEADSETDAGDYKVVATNELGSAT 642
            L L       D+G+Y     +E  S T
Sbjct: 69  RLVLPAV-QLEDSGEYLCEIDDESASFT 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
               +      V A     V L    +  P  ++ W  +GE + E+  ++   +  +   
Sbjct: 12  SWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRR- 69

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDI---PVKVNTGKPE 112
              + + +++  + G Y     +      + +   PV++    P 
Sbjct: 70  ---LVLPAVQLEDSGEYLCEIDDESASFTVTVTEPPVRIIYSGPS 111

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 733 TVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           +    S  +     +      +     E  VL  E+    A+V+W K+   + 
Sbjct: 6   SGTDVSSWIV----YPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVV 54

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  115 bits (288), Expect = 4e-28
 Identities = 35/330 (10%), Positives = 88/330 (26%), Gaps = 47/330 (14%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P      T    A      + +     + +  L   YN +      E +   +  ++  V
Sbjct: 29  PSCMFGGTMNDMAALGEPFSAKCP--PIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV 86

Query: 72  ---SIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITE 127
               +             Y      + G+  +  +   +     + PS +   +++   +
Sbjct: 87  KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR----KPPSCIPETYELGTHD 142

Query: 128 GESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
                L   +   +    + WYK+ + +        ++   L +     +D GRY   V 
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202

Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
             +  +++   ++                   V+             +    L     ++
Sbjct: 203 YDDVRIKNDIVVSR-------------CKILTVIP----------SQDHRFKLILDPKIN 239

Query: 247 ITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQIT--------SEKNTHTLTLIQ 294
           +T GE A ++              ++W      I                    TL    
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFEN 299

Query: 295 CSTKDKGR-YSVKVTNKEGTVESAANLNVD 323
            + +  G  Y+ +  N          + ++
Sbjct: 300 VTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  107 bits (269), Expect = 9e-26
 Identities = 56/323 (17%), Positives = 95/323 (29%), Gaps = 40/323 (12%)

Query: 218 YVVSELDTLQVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGE---------PSPKV 267
           +     DTL     K   PS +     +     GE          +             V
Sbjct: 11  FFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVV 70

Query: 268 EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA 327
            W K GK  +      +     +     S     RY   VT K G        +  +   
Sbjct: 71  NWEKIGKTRRPLNRRVKNGDLWIANYT-SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPP 129

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
             I +  +L   ++    L   +   K    + W+K+ QE+        +       L+I
Sbjct: 130 SCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---LII 186

Query: 386 RNISVHDEGEYTCSLPDQETSAELNVV------------ELPPEISVPLQDVKVSRDEKA 433
            N  + D G Y C +   +   + ++V            +      +    + V+  E A
Sbjct: 187 HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPA 246

Query: 434 SFE-----IELTKGDALVKWYKDGKEIAFSEN-----VTLSIDGKKQKLIIFSAGLEDAG 483
           +         L   D L+ W      I   +      +T S    +  L   +   E  G
Sbjct: 247 NITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIG 306

Query: 484 E-YSCRVG-DTGDKESKATLTVE 504
             Y+CR      DK    T+ +E
Sbjct: 307 NTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 89.9 bits (222), Expect = 1e-19
 Identities = 41/311 (13%), Positives = 75/311 (24%), Gaps = 68/311 (21%)

Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGE-YTC----SLPDQETSAELNV 411
           V W K G+  +   +    K G    L I N + +D    Y C       D       + 
Sbjct: 70  VNWEKIGKTRRPLNRRV--KNGD---LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSH 124

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKK 469
           +  PP       ++             +        + WYK+ +E+              
Sbjct: 125 IRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN- 183

Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
             LII +  LED+G Y C V  D    ++   ++              +T++P       
Sbjct: 184 --LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI----------LTVIP------- 224

Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
                                            +    +  V       +     ++   
Sbjct: 225 --------------------------SQDHRFKLILDPKINVTIGEPANITCTAVSTSLL 258

Query: 589 ----SIVWFRNNKPLLSSPKKREIF-----DGENIILELKEADSETDAGDYKVVATNELG 639
                I W   +  ++                    L  +    E     Y     N   
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318

Query: 640 SATHGARVTVD 650
             T    V ++
Sbjct: 319 DKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 48/367 (13%), Positives = 82/367 (22%), Gaps = 113/367 (30%)

Query: 392 DEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG--------- 442
           +  E+   + D    A+ +    P  +     +   +  E  S +    +          
Sbjct: 7   EITEFFNKMRD-TLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYND 65

Query: 443 -DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGE-YSCRV--GDTGDKESK 498
            D +V W K GK         L+   K   L I +    D+   Y C V   +    +  
Sbjct: 66  KDNVVNWEKIGKTRR-----PLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI 120

Query: 499 ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA 558
               +  P                                                    
Sbjct: 121 VRSHIRKP---------------------------------------------------- 128

Query: 559 PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           P  I    E    +K  I L   +  A    +I W++NN+ L+    K        II  
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHN 188

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
                   D+G Y      +     +   V+                             
Sbjct: 189 P----ELEDSGRYDCYVHYDDVRIKNDIVVSR---------------------------- 216

Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA----EWTVNGT 733
                 + V               P++ V  GE   I     +          +W     
Sbjct: 217 ---CKILTVIPS--QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271

Query: 734 VIVPSKR 740
            I+    
Sbjct: 272 WIIGLDF 278

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score =  107 bits (269), Expect = 5e-28
 Identities = 26/95 (27%), Positives = 43/95 (45%)

Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           G   F ++L +L+V+E+  AV   +     A V W K   E++ S K    ++G   +L 
Sbjct: 7   GANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66

Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
           I  +   D   YTC +   ++ A+L V       S
Sbjct: 67  ISALEKADSDTYTCDIGQAQSRAQLLVQGRRSGPS 101

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 98.9 bits (247), Expect = 5e-25
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
               +  L +++V     A F  +     A V W K   E+  S     S +G   +L I
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67

Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
            +    D+  Y+C +G     +S+A L V+      
Sbjct: 68  SALEKADSDTYTCDIGQA---QSRAQLLVQGRRSGP 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 164
           +G        E L ++ + E  +AV + +    P+  V W K    ++     Q + E  
Sbjct: 3   SGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGL 61

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
           T  LT+      D   Y+  +    G  +S A L V      + + + PS
Sbjct: 62  TLRLTISALEKADSDTYTCDI----GQAQSRAQLLV------QGRRSGPS 101

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 82.0 bits (203), Expect = 5e-19
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 286
           +G        E L ++ + E  +AV + +    P+  V W K    ++     Q + E  
Sbjct: 3   SGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGL 61

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           T  LT+      D   Y+  +    G  +S A L V
Sbjct: 62  TLRLTISALEKADSDTYTCDI----GQAQSRAQLLV 93

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 553 GSPG--QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           GS G   A  F E      V+EKGT     K    PA ++ W +    L +S K +   +
Sbjct: 1   GSSGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE 59

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 655
           G  + L +   +   D+  Y        G A   A++ V   + G
Sbjct: 60  GLTLRLTISALEKA-DSDTYTCDI----GQAQSRAQLLVQGRRSG 99

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
              F+++   +  EE        +    P   + W      L+ + +   S +       
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLR-- 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             +TI +++K +   YT      +  A++ +      G+   PS
Sbjct: 65  --LTISALEKADSDTYTCDIGQAQSRAQLLV-----QGRRSGPS 101

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           S    G   F ++L +L+V+E+  AV   +     A V W K    ++
Sbjct: 2   SSGSSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELR 49

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score =  106 bits (266), Expect = 1e-27
 Identities = 24/91 (26%), Positives = 39/91 (42%)

Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
               E  K L  +EV   E A  E+E++      +W   GQ +  S    I + G    L
Sbjct: 3   MALIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62

Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVEL 414
           ++ N  +   GE +    + +++A L V EL
Sbjct: 63  ILHNCQLGMTGEVSFQAANTKSAANLKVKEL 93

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score =  100 bits (250), Expect = 2e-25
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
             E+  PL  V+V   E A FEIEL++ D   +W   G+ +A S +  +  DGKK  LI+
Sbjct: 5   LIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64

Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
            +  L   GE S +  +T   +S A L V+ 
Sbjct: 65  HNCQLGMTGEVSFQAANT---KSAANLKVKE 92

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 85.8 bits (213), Expect = 1e-20
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 165
           G      + +PL+ V +  GE+A   +++  EP    +W   G+ +    D +I  +   
Sbjct: 1   GAMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           H L L  C     G  S +  N     +SAANL V
Sbjct: 60  HILILHNCQLGMTGEVSFQAAN----TKSAANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 85.8 bits (213), Expect = 1e-20
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 287
           G      + +PL+ V +  GE+A   +++  EP    +W   G+ +    D +I  +   
Sbjct: 1   GAMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           H L L  C     G  S +  N     +SAANL V
Sbjct: 60  HILILHNCQLGMTGEVSFQAAN----TKSAANLKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
           G+        +      V    T     ++ + P     W    +PL +SP    I DG+
Sbjct: 1   GAMAL-IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGK 58

Query: 613 NIILELKEADSETDAGDYKVVATNELGSAT 642
             IL L         G+    A N   +A 
Sbjct: 59  KHILILHNCQLG-MTGEVSFQAANTKSAAN 87

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
               K    V          E+  ++ P+    W   G+PL  + +    +    H   
Sbjct: 5  LIEVEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI-- 61

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
            + + + +    G  +  A N +  A 
Sbjct: 62 --LILHNCQLGMTGEVSFQAANTKSAAN 87

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           E  K L  +EV   E A  E+E++      +W      + 
Sbjct: 7   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLA 46

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  109 bits (274), Expect = 1e-27
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 19/192 (9%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKD-----RQITSEKNTH 288
             +        I+ GES     QV G+     + W+  +G+ +         + ++ ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
           TLT+   +  D G Y   VT ++GT   A  N+ +   K  F       E KE E+AV+ 
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-FQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 348 VEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SL 400
            +V S     + W   G+++  K   +  +        L IR I   DEG Y C      
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---LQIRGIKKTDEGTYRCEGRILA 178

Query: 401 PDQETSAELNVV 412
             +    ++ V+
Sbjct: 179 RGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  106 bits (266), Expect = 1e-26
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 44/220 (20%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKD-----RQITSEKNTH 166
             +        I+ GES     QV G+     + W+  +G+ +         + ++ ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDT 225
           TLT+   +  D G Y   VT ++GT   A  N+ +                         
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI------------------------- 97

Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQIT 282
                   +K             EGE AV+   V     P + W   G+ +   KD +  
Sbjct: 98  -------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              N + L +      D+G Y  +         +  ++ V
Sbjct: 151 VLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  102 bits (255), Expect = 5e-25
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 13/195 (6%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYY-NGEPLQETDEVVFSDQSDMHS 69
                                  ++     + D+ W+  NGE L    + +    +D  S
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
             S +TI +    + G+Y  V    +G   +  + VK+     +K             EG
Sbjct: 62  --STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF----QKLMFKNAPTPQEFKEG 115

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
           E AV+   V     P + W   G+ +   KD +     N + L +      D+G Y  + 
Sbjct: 116 EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEG 174

Query: 186 TNKEGTVESAANLNV 200
                   +  ++ V
Sbjct: 175 RILARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 96.0 bits (239), Expect = 6e-23
 Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 61/244 (25%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKG--DALVKWYK-DGKEIAFSEN--VTLSIDGKK 469
             ++ +     ++S  E   F  ++     D  + W+  +G++++ ++     +  D   
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 470 QKLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
             L I++A ++DAG Y C V   D    E+   + +                        
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK--------------------- 100

Query: 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 587
                                           +F      +  KE     ++  V +S  
Sbjct: 101 -------------------------------LMFKNAPTPQEFKEGEDAVIVCDVVSSLP 129

Query: 588 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647
           P+I+W    + ++     R I    N  L+++    +TD G Y+           +   +
Sbjct: 130 PTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDI 187

Query: 648 TVDV 651
            V V
Sbjct: 188 QVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 90.3 bits (224), Expect = 7e-21
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 16/190 (8%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFK-DGQEIKTSKK--VTIEKKGTIRK 382
           +        E+   E+     +V  D    D+ WF  +G+++  +++    +        
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63

Query: 383 LLIRNISVHDEGEYTC-----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
           L I N ++ D G Y C          E +  + + +            +    E A    
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVC 122

Query: 438 ELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GD 494
           +         + W   G+++   ++V   +      L I      D G Y C        
Sbjct: 123 D-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 495 KESKATLTVE 504
           + +   + V 
Sbjct: 181 EINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 46/190 (24%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKR---EIFDGE 612
           +         +  +    +   + +V        I WF  N   LS  ++R      D +
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
           +  L +  A +  DAG YK V T E G+                                
Sbjct: 61  SSTLTIYNA-NIDDAGIYKCVVTAEDGT-------------------------------- 87

Query: 673 DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG 732
                 +    V+V+  +    +    P P    K+GED  I     +  PP   W   G
Sbjct: 88  ------QSEATVNVK--IFQKLMFKNAPTP-QEFKEGEDAVIVCDVVSSLPPTIIWKHKG 138

Query: 733 TVIVPSKRVK 742
             ++  K V+
Sbjct: 139 RDVILKKDVR 148

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  109 bits (274), Expect = 2e-27
 Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 28/215 (13%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQV-GGEPSP-KVEWYKDGKLI---KDRQITSEKNTHT 167
            P   E   +V + EG+  VL        P      W  +   +    D++    +    
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
           L +      DKG YS  V++   T    +                          L  + 
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIP----------------------LIPIP 105

Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
             T KP    I+    DV    G++  L     G P P + W K  + +      S    
Sbjct: 106 ERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG- 164

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             L +     +D+G Y  +  N  G  +  A + V
Sbjct: 165 AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 99.6 bits (248), Expect = 5e-24
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 15/199 (7%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLE--VRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDM 67
           + P   ++   V  +E   + L          +    W  N  P+    D+  F  Q++ 
Sbjct: 7   LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN- 65

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV------NTGKPEKPSILEPLH 121
                 + I +++  ++G Y+    +      +             T KP    I+    
Sbjct: 66  ----GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
           DV    G++  L     G P P + W K  + +      S      L +     +D+G Y
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDEGIY 180

Query: 182 SVKVTNKEGTVESAANLNV 200
             +  N  G  +  A + V
Sbjct: 181 ECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 94.2 bits (234), Expect = 3e-22
 Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 51/240 (21%)

Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKG---DALVKWYKDGKEIAFSENVTLSIDGKKQ 470
           L P       +V+V   +      +       D   +W  +   +  + +    +     
Sbjct: 7   LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66

Query: 471 KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQ 529
            L I +    D G YSC V   +  K   +                              
Sbjct: 67  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP-------------------------- 100

Query: 530 VELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
                           ++P     +       + +F++        + L      +P P 
Sbjct: 101 ----------------LIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144

Query: 590 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           I W +  +P+ S+ +          +L++       D G Y+  A N  G   H AR+ V
Sbjct: 145 IRWRKVLEPMPSTAE----ISTSGAVLKIFNI-QLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 93.4 bits (232), Expect = 8e-22
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQV-GGEPSP-KVEWYKDGKLI---KDRQITSEKNTHT 289
            P   E   +V + EG+  VL        P      W  +   +    D++    +    
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---------DQGKAEFIKKLDDLEVKE 340
           L +      DKG YS  V++   T    +                 A+ + +  D+    
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127

Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
            +N  LE     +   D++W K  + + ++ +++         L I NI + DEG Y C 
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV----LKIFNIQLEDEGIYECE 183

Query: 399 ---SLPDQETSAELNV 411
                   +  A + V
Sbjct: 184 AENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 89.6 bits (222), Expect = 1e-20
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTS---DKADVKWFKDGQEIKTS---KKVTIEKKGTIRK 382
             ++  ++ VKE +  VL  +      D    +W  +   +  +   ++   +  G    
Sbjct: 11  PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN--- 67

Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVV---------ELPPEISVPLQDVKVSR 429
           L I N+   D+G Y+C        +   ++   +           P +I V  +DV    
Sbjct: 68  LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127

Query: 430 DEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC 487
            +  + E     G+ +  ++W K  + +       +S  G    L IF+  LED G Y C
Sbjct: 128 GQNVTLECFAL-GNPVPDIRWRKVLEPM--PSTAEISTSGAV--LKIFNIQLEDEGIYEC 182

Query: 488 RVG-DTGDKESKATLTVEA 505
                 G  + +A + V+A
Sbjct: 183 EAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 35/186 (18%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIIL 616
           P   E   E  VKE   + L+           S  W  N  P+  +  KR      N  L
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
            +      +D G+Y    ++   + +  ++    +                         
Sbjct: 69  YIANV-EASDKGNYSCFVSSPSITKSVFSKFIPLI------------------------- 102

Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
                     E+  +  P        +V    G+++ +E      P P   W      + 
Sbjct: 103 -------PIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP 155

Query: 737 PSKRVK 742
            +  + 
Sbjct: 156 STAEIS 161

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  111 bits (278), Expect = 2e-27
 Identities = 48/286 (16%), Positives = 91/286 (31%), Gaps = 39/286 (13%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLI 293
           K  I      VS+ + E+  L  +V   P     +W+ +G   +        +T +  + 
Sbjct: 1   KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYRIT 53

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD 353
             S  D G Y  +      +      ++        + ++      E E   L      D
Sbjct: 54  SASVNDSGEYRCQRGLSGRSDPIQLEIHRGW----LLLQVSSRVFTEGEPLALRCHAWKD 109

Query: 354 K--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS----LPDQETSA 407
           K   +V ++++G+  K               L I   ++   G Y CS            
Sbjct: 110 KLVYNVLYYRNGKAFKFFHWN--------SNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161

Query: 408 ELNVVELP--PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTL 463
            + V EL   P ++  +    +      +   E +L      ++ Y       +  + TL
Sbjct: 162 SVTVKELFPAPVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSF----YMGSKTL 216

Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCR----VGDTGDKESKATLTVEA 505
                  +  I +A  ED+G Y C      G+   +  +  L V  
Sbjct: 217 RGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  109 bits (274), Expect = 7e-27
 Identities = 41/296 (13%), Positives = 76/296 (25%), Gaps = 64/296 (21%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLI 171
           K  I      VS+ + E+  L  +V   P     +W+ +G   +        +T +  + 
Sbjct: 1   KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYRIT 53

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTG 231
             S  D G Y  +      +      ++                   V            
Sbjct: 54  SASVNDSGEYRCQRGLSGRSDPIQLEIHRGW--------LLLQVSSRVF----------- 94

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 290
                           TEGE   L       +    V +Y++GK  K            L
Sbjct: 95  ----------------TEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-----WNSNL 133

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE-FIKKLDDLEVKERENAVLEVE 349
           T+++ +    G Y      K     +  ++ V +      +       + E     L  E
Sbjct: 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCE 193

Query: 350 VTSDKADV------KWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
                          ++   + ++           T  +  I      D G Y C 
Sbjct: 194 TKLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYWCE 241

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  104 bits (262), Expect = 3e-25
 Identities = 47/311 (15%), Positives = 83/311 (26%), Gaps = 72/311 (23%)

Query: 25  EENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
            +   VTL   ++ +P      W+ NG   Q +                   I S    +
Sbjct: 14  FQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST--------------PSYRITSASVND 59

Query: 84  EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPS 142
            G Y            + + +           +L+    V  TEGE   L       +  
Sbjct: 60  SGEYRCQRGLSGRSDPIQLEIH------RGWLLLQVSSRV-FTEGEPLALRCHAWKDKLV 112

Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP 202
             V +Y++GK  K            LT+++ +    G Y      K     +  ++ V  
Sbjct: 113 YNVLYYRNGKAFKFFH-----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV-- 165

Query: 203 YEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 262
                  +     P    S                         + EG    LS +    
Sbjct: 166 -------KELFPAPVLNASV---------------------TSPLLEGNLVTLSCETKLL 197

Query: 263 PSP-----KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA 317
                      +Y   K ++ R       +    ++    +D G Y  +   ++G V   
Sbjct: 198 LQRPGLQLYFSFYMGSKTLRGRN-----TSSEYQILTARREDSGLYWCEAATEDGNVLKR 252

Query: 318 ---ANLNVDQG 325
                L V  G
Sbjct: 253 SPELELQV-LG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 97.3 bits (242), Expect = 1e-22
 Identities = 52/332 (15%), Positives = 90/332 (27%), Gaps = 78/332 (23%)

Query: 326 KAEFIKKLDDLEVKERENAVL--EVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
           KA    +   + V + E   L  EV      +  +WF +G   +TS              
Sbjct: 1   KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSY 50

Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD 443
            I + SV+D GEY C       S  + +      + + +     +  E  +      K  
Sbjct: 51  RITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDK 110

Query: 444 AL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKAT 500
            +  V +Y++GK   F              L I    +   G Y C   G      +  +
Sbjct: 111 LVYNVLYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162

Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
           +TV                         +    +P +                       
Sbjct: 163 VTV-------------------------KELFPAPVLNAS-------------------- 177

Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 620
                    + E   + L  + K       +    +  + S   +      E  IL  + 
Sbjct: 178 -----VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARR 232

Query: 621 ADSETDAGDYKVVATNELGSATHG-ARVTVDV 651
            DS    G Y   A  E G+       + + V
Sbjct: 233 EDS----GLYWCEAATEDGNVLKRSPELELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 28/198 (14%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
                 +       E   + L           ++L+Y NG+  +                
Sbjct: 82  RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------- 130

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
            S +TI        G Y      +       I V V       P +   +    + EG  
Sbjct: 131 -SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV-KELFPAPVLNASV-TSPLLEGNL 187

Query: 131 AVLSVQVGGEPSP-----KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
             LS +               +Y   K ++ R       +    ++    +D G Y  + 
Sbjct: 188 VTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN-----TSSEYQILTARREDSGLYWCEA 242

Query: 186 TNKEGTVESA---ANLNV 200
             ++G V        L V
Sbjct: 243 ATEDGNVLKRSPELELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 66.1 bits (161), Expect = 4e-12
 Identities = 36/249 (14%), Positives = 69/249 (27%), Gaps = 77/249 (30%)

Query: 416 PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
             I++    V V ++E  +   E+    G +  +W+ +G     S               
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYR 51

Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
           I SA + D+GEY C+ G +G  +    L +                              
Sbjct: 52  ITSASVNDSGEYRCQRGLSGRSDP-IQLEIHRG--------------------------- 83

Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVW 592
                                     L ++    +   E   + L           ++++
Sbjct: 84  -------------------------WLLLQ-VSSRVFTEGEPLALRCHAWKDKLVYNVLY 117

Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
           +RN K                  L + +  + +  G Y      +    + G  VTV  E
Sbjct: 118 YRNGKAFKFFHWNSN--------LTILKT-NISHNGTYHCSGMGKHRYTSAGISVTV-KE 167

Query: 653 KVGRPPINS 661
               P +N+
Sbjct: 168 LFPAPVLNA 176

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score =  105 bits (263), Expect = 3e-27
 Identities = 25/88 (28%), Positives = 38/88 (43%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
            + F KK   +EV     AV E E       V+W + G +I  S K  +  +GT   L +
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67

Query: 386 RNISVHDEGEYTCSLPDQETSAELNVVE 413
           R +   D+G Y       +   +L V+E
Sbjct: 68  REVGPADQGSYAVIAGSSKVKFDLKVIE 95

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
             +     S   + V+V+    A FE E  +    V+W + G +I+ S    L+ +G + 
Sbjct: 4   GKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRH 63

Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
            L +   G  D G Y+   G +   + K  L V 
Sbjct: 64  TLTVREVGPADQGSYAVIAGSS---KVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 164
            GK    +  +    V +  G  AV   +       KV W + G  I       + +E  
Sbjct: 3   PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            HTLT+ +    D+G Y+V      G+ +   +L V
Sbjct: 62  RHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 286
            GK    +  +    V +  G  AV   +       KV W + G  I       + +E  
Sbjct: 3   PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            HTLT+ +    D+G Y+V      G+ +   +L V
Sbjct: 62  RHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 555 PGQAPL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
           PG+ P+  F ++     V         A+        + W R    + +S K     +G 
Sbjct: 3   PGKKPVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGT 61

Query: 613 NIILELKEADSETDAGDYKVVATNELGSAT 642
              L ++E     D G Y V+A +      
Sbjct: 62  RHTLTVREVGPA-DQGSYAVIAGSSKVKFD 90

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
             FSKK + V     S    E          + W   G  +  +++   + +   H+  
Sbjct: 8  VSAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASNKYGLATEGTRHT-- 64

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
            +T++ +   ++G Y V+A + + +  
Sbjct: 65 --LTVREVGPADQGSYAVIAGSSKVKFD 90

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 737 PSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           P    K  + F KK   +EV     AV E E       V+W +  S I 
Sbjct: 1   PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDIS 49

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score =  104 bits (262), Expect = 7e-27
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTI 374
           S ++  V   +   I+ L+D++V+E  +A     ++ ++   V WF D   +  ++   I
Sbjct: 3   SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62

Query: 375 EKK-GTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
           + + G    L +R +++ D G       DQ  SA L V E P   S
Sbjct: 63  DAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAALRVTEKPSVFS 108

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score =  103 bits (259), Expect = 2e-26
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYKDGKEIAFSENVTL 463
           + +   V      I   L+DV V     A+F   ++  +   V W+ D   +  +E   +
Sbjct: 3   SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62

Query: 464 SI-DGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
               G    L +    L+D+G         GD+ + A L V      F    PS
Sbjct: 63  DAQPGGYHVLTLRQLALKDSGTIYFEA---GDQRASAALRVTEKPSVFSRSGPS 113

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 91.7 bits (228), Expect = 3e-22
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 165
           +  +  I+E L DV + EG SA    ++       V W+ D   +               
Sbjct: 10  QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
           H LTL Q + KD G    +     G   ++A L V       S+  P S
Sbjct: 70  HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSS 114

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
           +  +  I+E L DV + EG SA    ++       V W+ D   +               
Sbjct: 10  QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKK 332
           H LTL Q + KD G    +     G   ++A L V +  + F + 
Sbjct: 70  HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRS 110

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENI 614
           G+    IE  E+  V+E  +     ++  +    + WF +  PL ++     +   G   
Sbjct: 11  GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70

Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTV---DVEKVGRPP 658
           +L L++   + D+G     A    G     A + V           P
Sbjct: 71  VLTLRQLALK-DSGTIYFEA----GDQRASAALRVTEKPSVFSRSGP 112

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 5/115 (4%)

Query: 2   SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF 61
           S  + +++G      +  + V  +E S  T   R+       + W+ +  PL   +    
Sbjct: 3   SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62

Query: 62  SDQSD-MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             Q    H     +T++ +  ++ G     A ++   A + +  K +      PS
Sbjct: 63  DAQPGGYHV----LTLRQLALKDSGTIYFEAGDQRASAALRVTEKPSVFSRSGPS 113

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 741 VKGKA-EFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKNNSLIK 785
           V+G+    I+ L+D++V+E  +A     ++ ++   V WF + + + 
Sbjct: 9   VQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH 55

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score =  104 bits (261), Expect = 8e-27
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
             P  I  PL+D  V+  E      EL++    V W KD K I  S+   +  +G    L
Sbjct: 6   SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAML 65

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
           +I  A L+DAGEY+C V  +   +S A+L VE  A   
Sbjct: 66  VIRGASLKDAGEYTCEVEAS---KSTASLHVEEKASGP 100

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score =  103 bits (260), Expect = 9e-27
 Identities = 32/92 (34%), Positives = 49/92 (53%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
             IK L+D  V   E+  L  E++     V W KD + I+ S+K  +  +GT+  L+IR 
Sbjct: 10  AIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69

Query: 388 ISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
            S+ D GEYTC +   +++A L+V E     S
Sbjct: 70  ASLKDAGEYTCEVEASKSTASLHVEEKASGPS 101

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 170
            +I++PL D  +  GE   L  ++    +P V W KD K I+      +  E     L +
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
              S KD G Y+ +V   + T    A+L+V         E   S P 
Sbjct: 68  RGASLKDAGEYTCEVEASKST----ASLHV---------EEKASGPS 101

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 81.6 bits (202), Expect = 7e-19
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 292
            +I++PL D  +  GE   L  ++    +P V W KD K I+      +  E     L +
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
              S KD G Y+ +V   + T    A+L+V+
Sbjct: 68  RGASLKDAGEYTCEVEASKST----ASLHVE 94

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           GS G +     I+  E++ V     + L  ++  +  P + W ++ K +  S K   + +
Sbjct: 1   GSSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE 59

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
           G   +L ++ A  + DAG+Y         +    A + V+ EK   P 
Sbjct: 60  GTMAMLVIRGASLK-DAGEYTCEVEASKST----ASLHVE-EKASGPS 101

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P    K  +  +     +V L   L     P + W  + + ++++ +     +  M    
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM-- 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             + I+    ++ G YT   +  +  A + +       K   PS
Sbjct: 65  --LVIRGASLKDAGEYTCEVEASKSTASLHV-----EEKASGPS 101

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           S    G A  IK L+D  V   E+  L  E++     V W K+   I+
Sbjct: 2   SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIR 49

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  105 bits (263), Expect = 2e-26
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 4/144 (2%)

Query: 76  IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
           +   K       + +  N+       +          KP   + + D+ + EG +A    
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 136 QVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
           +V G P P+V W+KD   +K+    +    E+   +LT+ +    D  +Y+ K  N  G 
Sbjct: 64  KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

Query: 192 VESAANLNVDPYEPKESKETPPSP 215
               A L V+    +   E     
Sbjct: 124 ATCTAELLVETMGKEGEGEGEGEE 147

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 91.5 bits (227), Expect = 1e-21
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
              KP   + + D+ + EG +A    +V G P P+V W+KD   +K+    +    E+  
Sbjct: 38  PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN 343
            +LT+ +    D  +Y+ K  N  G     A L V+    E   + +  E +E E 
Sbjct: 98  CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
            P   P F +   +  V E    R   KV+  P P ++WF+++ P+  S   +  +D E 
Sbjct: 37  KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96

Query: 614 II-LELKEADSETDAGDYKVVATNELGSATHGARVTVDV-EKVGRPPI 659
              L + E   + D   Y   A N LG AT  A + V+   K G    
Sbjct: 97  NCSLTISEVCGD-DDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 78.4 bits (193), Expect = 3e-17
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVD-----QGKAEFIKKLDDLEVKERENAVLEVEV 350
             K  G       N        A L          K  F K + D+EV E   A  + +V
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65

Query: 351 TSD-KADVKWFKDGQEIKTSKKVTIEKKGT-IRKLLIRNISVHDEGEYTC----SLPDQE 404
                 +V WFKD   +K S+   I+        L I  +   D+ +YTC    SL +  
Sbjct: 66  EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125

Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEK 432
            +AEL V  +  E     +  +   +E+
Sbjct: 126 CTAELLVETMGKEGEGEGEGEEDEEEEE 153

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 68.7 bits (168), Expect = 9e-14
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 2   SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF 61
             +A+    + P F+K    +   E S    + ++   P+P+++W+ +  P++E+     
Sbjct: 31  EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 90

Query: 62  S-DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
             D+    S    +TI  +   ++  YT  A N  GEA     + V T   E     E  
Sbjct: 91  DYDEEGNCS----LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGE 146

Query: 121 HDVSITE 127
            D    E
Sbjct: 147 EDEEEEE 153

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 385 IRNISVHDEGEYTCSLPDQETSAELNV-------VELPPEISVPLQDVKVSRDEKASFEI 437
           +           +    ++  + +  +         + P  +  + D++V     A F+ 
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 438 ELTKGDAL--VKWYKDGKEIAFSENVTLSIDGK-KQKLIIFSAGLEDAGEYSCR-VGDTG 493
           ++  G     V W+KD   +  S +  +  D +    L I     +D  +Y+C+ V   G
Sbjct: 64  KVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122

Query: 494 DKESKATLTVEAPAVE 509
           +    A L VE    E
Sbjct: 123 EATCTAELLVETMGKE 138

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  102 bits (257), Expect = 2e-26
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 167
              P I   +    +  G++    + V  +P+ +V+WY +G  ++       T+     T
Sbjct: 6   DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
           L ++ C T D G Y    TN +G     A L+V   +
Sbjct: 66  LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  101 bits (253), Expect = 8e-26
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 289
              P I   +    +  G++    + V  +P+ +V+WY +G  ++       T+     T
Sbjct: 6   DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEF 329
           L ++ C T D G Y    TN +G     A L+V     ++
Sbjct: 66  LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT--GGDY 103

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 89.7 bits (223), Expect = 8e-22
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
           +   AP    R     V      R +  V++ P   + W+ N   L  S K         
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
           + LE+ +  ++ D+G Y+ V TN  G A+  A + V 
Sbjct: 64  LTLEILDCHTD-DSGTYRAVCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
               ++    V   +N    + V S   A+VKW+ +G E++ S K+       +  L I 
Sbjct: 10  RITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEIL 69

Query: 387 NISVHDEGEYTC----SLPDQETSAELNV 411
           +    D G Y         +    A L+V
Sbjct: 70  DCHTDDSGTYRAVCTNYKGEASDYATLDV 98

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
           ++  P I++ ++  +V   +   F + +      A VKWY +G E+  S  +  +     
Sbjct: 5   LDHAPRITLRMRSHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNTSGV 63

Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
             L I     +D+G Y        G+    ATL V   
Sbjct: 64  LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P  + + +             + + + P  ++ WY+NG  LQE+ ++ +++ S + +  
Sbjct: 8  APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT-- 65

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
            + I      + G Y  V  N +GEA
Sbjct: 66 --LEILDCHTDDSGTYRAVCTNYKGEA 90

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
               ++    V   +N    + V S   A+VKW+ N   ++
Sbjct: 10  RITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ 50

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score =  102 bits (256), Expect = 4e-26
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 315 ESAANLNVDQGKAEFIKKLDDL-EVKERENAVLEVEVTSDKADVKWFKDGQEIKTS-KKV 372
              ++++  +    F KKL+   +V +     L VE+    A+VKW K+GQEI+ S  K 
Sbjct: 5   HHHSSMDEKK-STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKY 63

Query: 373 TIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVE 413
             E  G  R L I   S+ D+  Y C +  ++ S EL V E
Sbjct: 64  IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVKE 104

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 412 VELPPEISVPLQD-VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFS-ENVTLSIDGKK 469
            +        L+   +VS+  K    +EL   DA VKW K+G+EI  S         G K
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71

Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
           + L I    L D   Y C V   G ++    L V+
Sbjct: 72  RTLTISQCSLADDAAYQCVV---GGEKCSTELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 110 KPEKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 164
           + +  +  + L     +++G    L+V++      +V+W K+G+ I+         S   
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGA 70

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             TLT+ QCS  D   Y   V  ++ +      L V
Sbjct: 71  KRTLTISQCSLADDAAYQCVVGGEKCS----TELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 232 KPEKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 286
           + +  +  + L     +++G    L+V++      +V+W K+G+ I+         S   
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGA 70

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             TLT+ QCS  D   Y   V  ++ +      L V
Sbjct: 71  KRTLTISQCSLADDAAYQCVVGGEKCS----TELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 558 APLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENII 615
           +  F ++ E    V +   IRL  ++ A     + W +N + +  S  K      G    
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73

Query: 616 LELKEADSETDAGDYKVVATNELGSAT 642
           L + +     D   Y+ V   E  S  
Sbjct: 74  LTISQCSLA-DDAAYQCVVGGEKCSTE 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 3   SLADILEGIPPTFSKKTKPVY-AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE-VV 60
             + + E     F KK +P Y   +  ++ L V  +A  + ++ W  NG+ +Q +    +
Sbjct: 6   HHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYI 64

Query: 61  FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102
           F       +    +TI      ++  Y  V    +   ++ +
Sbjct: 65  FESIGAKRT----LTISQCSLADDAAYQCVVGGEKCSTELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 736 VPSKRVKGKAEFIKKLDDL-EVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
             S   K    F KKL+   +V +     L VE+    A+VKW KN   I+
Sbjct: 7   HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQ 57

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  105 bits (264), Expect = 4e-26
 Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 17/208 (8%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
             T       V   EN+ V L         P + W ++               +     V
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 72  SIV----TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
           + +    T KS+ + + G YT +     G +  ++ VK+    P  PS        S T 
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--PSKPTVNIPSSATI 121

Query: 128 GESAVLSVQV-GGEPSPKVEWYKDGKLI----------KDRQITSEKNTHTLTLIQCSTK 176
           G  AVL+     G P  +  W+KDG ++           +        T  L     S  
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181

Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYE 204
           D G YS +  N  GT  ++  + ++  E
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  105 bits (262), Expect = 8e-26
 Identities = 45/232 (19%), Positives = 69/232 (29%), Gaps = 52/232 (22%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT------- 165
             ++     +V I E     LS    G  SP+VEW  D          + K T       
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 166 ----HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
                 +T    + +D G Y+  V+ + G       + +    P                
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP---------------- 107

Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI---- 276
                         PS        S T G  AVL+     G P  +  W+KDG ++    
Sbjct: 108 --------------PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153

Query: 277 ------KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                  +        T  L     S  D G YS +  N  GT  ++  + +
Sbjct: 154 KSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 95.0 bits (236), Expect = 2e-22
 Identities = 30/195 (15%), Positives = 62/195 (31%), Gaps = 24/195 (12%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK--------LLI 385
           ++ + E     L    +      V+W  D  +         +   +           +  
Sbjct: 13  EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKASFEIELT 440
           ++++  D G YTC       +     ++ + V +PP           +   +A       
Sbjct: 73  KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQ 132

Query: 441 KGD--ALVKWYKDGKEIAFSE-------NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG- 490
            G   +   W+KDG  +  +        N +  ++    +L+       D GEYSC    
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192

Query: 491 DTGDKESKATLTVEA 505
             G   +   + +EA
Sbjct: 193 GYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 79.6 bits (196), Expect = 5e-17
 Identities = 38/257 (14%), Positives = 68/257 (26%), Gaps = 73/257 (28%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEI----AFSENVTLSIDGK 468
              +     +V++  +         + G +   V+W  D  +      ++  +T S + +
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 469 KQK----LIIFSAGLEDAGEYSCRV---GDTGDKESKATLTVEAPAVEFLTKLPSVTLVP 521
                  +   S   ED G Y+C V   G     E K  L V  P               
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--------------- 107

Query: 522 HLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
                                                P         +        L   
Sbjct: 108 -------------------------------------PSKPTVNIPSSATIGNRAVLTCS 130

Query: 582 V-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD------SETDAGDYKVVA 634
               SP     WF++   + ++PK    F   + +L     +      S +D G+Y   A
Sbjct: 131 EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEA 190

Query: 635 TNELGSATHGARVTVDV 651
            N  G+      V ++ 
Sbjct: 191 RNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSD--- 66
           +PP+      P  A   +   L        P  +  W+ +G  +    +   +  +    
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
           ++     +    +   + G Y+  A+N  G       V++
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 21/192 (10%), Positives = 42/192 (21%), Gaps = 50/192 (26%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG------ 611
           +        E  + E   ++L        +P + W  +                      
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 612 --ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV 669
                 +  K   +  D G Y  + + E G++    +V +                    
Sbjct: 64  TFLPTGITFKSV-TREDTGTYTCMVSEEGGNSYGEVKVKLI------------------- 103

Query: 670 HHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE-VRFKALPPPKAEW 728
                               V   P   P          G    +        PP +  W
Sbjct: 104 --------------------VLVPPSK-PTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142

Query: 729 TVNGTVIVPSKR 740
             +G V+  + +
Sbjct: 143 FKDGIVMPTNPK 154

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score =  102 bits (255), Expect = 4e-26
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 11/106 (10%)

Query: 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKK 371
           G+  S+          + +  L D  V   +   L+ E++ +    KW K+G  ++ S +
Sbjct: 1   GSSGSSG--------LKILTPLTDQTVNLGKEICLKCEISEN-IPGKWTKNGLPVQESDR 51

Query: 372 VTIEKKGTIRKLLIRNISVHDEGEYTCSLP--DQETSAELNVVELP 415
           + + +KG I KL+I N    DEG+Y  +    +    A+++V+  P
Sbjct: 52  LKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
             +I  PL D  V+  ++   + E++  +   KW K+G  +  S+ + +   G+  KL+I
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEIS-ENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65

Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
            +A  ED G+Y     D  +    A + V + 
Sbjct: 66  ANALTEDEGDYVFAP-DAYNVTLPAKVHVISG 96

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 170
             IL PL D ++  G+   L  ++        +W K+G  ++     ++  +   H L +
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
               T+D+G Y          V   A ++V
Sbjct: 66  ANALTEDEGDYVFAPDA--YNVTLPAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 292
             IL PL D ++  G+   L  ++        +W K+G  ++     ++  +   H L +
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
               T+D+G Y          V   A ++V
Sbjct: 66  ANALTEDEGDYVFAPDA--YNVTLPAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 553 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 611
           GS G + L  +    ++TV     I L  K + S      W +N  P+  S + + +  G
Sbjct: 1   GSSGSSGLKILTPLTDQTVNLGKEICL--KCEISENIPGKWTKNGLPVQESDRLKVVQKG 58

Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
               L +  A +E D GDY         +    A+V V  
Sbjct: 59  RIHKLVIANALTE-DEGDYVFAPDAYNVTLP--AKVHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                           E+ L+  +         W  NG P+QE+D +    +  +H   
Sbjct: 7  GLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRIHK-- 62

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
            + I +    +EG Y            
Sbjct: 63 --LVIANALTEDEGDYVFAPDAYNVTLP 88

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
            + +  L D  V   +   L+ E++ +    KW KN   ++
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEISEN-IPGKWTKNGLPVQ 47

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  102 bits (255), Expect = 6e-26
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEK 163
           +G    P     L    I EG     + +V G P PK+ W+KDGK I        I  + 
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62

Query: 164 N-THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
           + T +L     +  D G Y++   N +G +     L V         +   S P 
Sbjct: 63  DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV---------QAVNSGPS 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 98.6 bits (246), Expect = 8e-25
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEK 285
           +G    P     L    I EG     + +V G P PK+ W+KDGK I        I  + 
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62

Query: 286 N-THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           + T +L     +  D G Y++   N +G +     L V
Sbjct: 63  DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 88.6 bits (220), Expect = 3e-21
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
               AP F  + +   + E   +    +V  +P P I WF++ K +        I    +
Sbjct: 4   GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63

Query: 614 II--LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 657
               L    +  + D G+Y ++A N  G  +   R+ V     G  
Sbjct: 64  GTCSLHTTASTLD-DDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSD 66
               P F  K K     E   VT   R+   P+P + W+ +G+ +    +   +  D   
Sbjct: 5   SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             S    +   +    ++G YT++A N +G       + V       PS
Sbjct: 65  TCS----LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV-QAVNSGPS 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGT-IRKLL 384
            F  KL   ++ E         V  + K  + WFKDG++I       TI++       L 
Sbjct: 10  FFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 69

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELPPE 417
               ++ D+G YT            +  L V  +   
Sbjct: 70  TTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDGKKQ 470
            P   + L+  K+      +F   +  G+    + W+KDGK+I+   +            
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 471 KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
            L   ++ L+D G Y+       G       L V+A 
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  107 bits (269), Expect = 6e-26
 Identities = 48/321 (14%), Positives = 94/321 (29%), Gaps = 82/321 (25%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPK---VEWYKDGKLIKDRQITSEKNTHTLT 169
            ++    +      G+   L+  V G EP P      W KD +  ++       NT TLT
Sbjct: 3   FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATLT 55

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
           +   ++++ G Y V V + +      + + +                             
Sbjct: 56  VADATSENAGSYKVTVQDTDTMTSVESEVFL----------------------------- 86

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQV---GGEPSPKV-----EWYKDGKLIKDRQI 281
             + E    +       ++      L   V   GG+           W K   +I     
Sbjct: 87  MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI----- 141

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQG-KAEFIKKLDDLEVKE 340
                T  +T+ + +    G Y+VKV  +     ++A+  +           ++   V  
Sbjct: 142 ---DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVAL 198

Query: 341 RENAVLEVEVTSDKADVK-----------WF--KDGQEIKTS---------KKVTIEKKG 378
                L   V+ D                W+  ++GQ   T          +  +I   G
Sbjct: 199 GNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG 258

Query: 379 TIRKLLIRNISVHDEGEYTCS 399
               L   + +  D  ++ C 
Sbjct: 259 H---LFKESATYDDTAKFWCV 276

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  102 bits (255), Expect = 4e-24
 Identities = 48/306 (15%), Positives = 97/306 (31%), Gaps = 63/306 (20%)

Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPK---VEWYKDGKLIKDRQITSEKNTHTLT 291
            ++    +      G+   L+  V G EP P      W KD +  ++       NT TLT
Sbjct: 3   FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATLT 55

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DQGKAEFIKKLDDLEVKERENAVLEVE 349
           +   ++++ G Y V V + +      + + +  +      I +     V  + +  L   
Sbjct: 56  VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115

Query: 350 VTSDKAD---------VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
           V                 W K    I T++ +TI           +  +    G YT  +
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVIDTTQDITI-----------QEFTADKNGVYTVKV 164

Query: 401 PDQ----ETSAELNVVELPPEISVP-LQDVKVSRDEKASFEIELTKGDALVK-------- 447
             +      SA   ++     +    ++   V+   + S    +++              
Sbjct: 165 WGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI 224

Query: 448 ---WY--KDGKEI---------AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
              WY  ++G+              E  +++ DG    L   SA  +D  ++ C      
Sbjct: 225 KYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH---LFKESATYDDTAKFWCVAKLYQ 281

Query: 494 DKESKA 499
             E + 
Sbjct: 282 QIEDET 287

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 90.3 bits (223), Expect = 7e-20
 Identities = 43/335 (12%), Positives = 95/335 (28%), Gaps = 70/335 (20%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLL---WYYNGEPLQETDEVVFSDQSD 66
           +  T S ++           TL   +    P P  L   W  + +P +            
Sbjct: 1   MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------- 51

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
                + +T+        G Y V  ++ +    ++        + E    +       ++
Sbjct: 52  -----ATLTVADATSENAGSYKVTVQDTDTMTSVE-SEVFLMEEAELIVNITEPQHFYVS 105

Query: 127 EGESAVLSVQV---GGEPSPKV-----EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDK 178
                 L   V   GG+           W K   +I          T  +T+ + +    
Sbjct: 106 SQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI--------DTTQDITIQEFTADKN 157

Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
           G Y+VKV  +     ++A+  +                   V E  +  V  G       
Sbjct: 158 GVYTVKVWGESEDSAASASTKIM---------LATMNVDQDVVE--SKTVALG------- 199

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKV--EWY--KDGKL---IKDRQITSEKNTHT-- 289
               +++S+    S  +     G P+  +   WY  ++G+L   +   ++       +  
Sbjct: 200 ----NEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT 255

Query: 290 ----LTLIQCSTKDKGRYSVKVTNKEGTVESAANL 320
               L     +  D  ++       +   +    +
Sbjct: 256 PDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 69.9 bits (170), Expect = 4e-13
 Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 42/227 (18%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKKVTIEKKGTIRKL 383
              + +       +   L   V  D+         W KD Q  +               L
Sbjct: 5   VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE----------NNTATL 54

Query: 384 LIRNISVHDEGEYTCSLPDQ----ETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEI 437
            + + +  + G Y  ++ D        +E+ ++E           Q   VS         
Sbjct: 55  TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114

Query: 438 ELTKGDAL---------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
            +                 W K    I  ++++T+                +  G Y+ +
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQ-----------EFTADKNGVYTVK 163

Query: 489 VGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
           V     D  + A+  +    +     +     V    + +    +S 
Sbjct: 164 VWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSE 210

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 30/258 (11%), Positives = 60/258 (23%), Gaps = 73/258 (28%)

Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDAL-----VKWYKDGKEIAFSENVTLSIDGK 468
           +   +S+          +  +    +   + L       W KD +            +  
Sbjct: 1   MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENN 50

Query: 469 KQKLIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
              L +  A  E+AG Y   V DT      +     +E   +      P    V    D 
Sbjct: 51  TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110

Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
                +                     S G+ P                         + 
Sbjct: 111 ELHATVK-------------------FSGGKTP-----------------------ADNY 128

Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646
                W +    + ++             + ++E  +    G Y V    E   +   A 
Sbjct: 129 ELHYSWSKGEDVIDTTQ-----------DITIQEF-TADKNGVYTVKVWGESEDSAASAS 176

Query: 647 VTVDV--EKVGRPPINSI 662
             + +    V +  + S 
Sbjct: 177 TKIMLATMNVDQDVVESK 194

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  107 bits (268), Expect = 7e-26
 Identities = 49/293 (16%), Positives = 90/293 (30%), Gaps = 34/293 (11%)

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 290
           G+P  PSI     ++ +  G++  L+          V W       +      E   +  
Sbjct: 8   GEPSPPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEM----VENKKNEW 59

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
              +      G Y+   +N      S+  + V +  A+       L  KE  +A++   +
Sbjct: 60  IQEKAEATRTGTYTCSNSNGLT---SSIYVFV-RDPAKLFLVGLPLFGKEDSDALVRCPL 115

Query: 351 T-SDKADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----LPDQ 403
           T    +     + DG+ + T        K  I   +      +      C+         
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLTFVPNPKAGI--TIKNVKRAYHRLCVRCAAQRDGTWLH 173

Query: 404 ETSAELNVVE---LPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFS 458
                L V E     P +SVP     + + +  +    +          W K   +    
Sbjct: 174 SDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI 233

Query: 459 ENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
             V  +   +          L I SA ++D+G + C   +T G      TL V
Sbjct: 234 AQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  101 bits (252), Expect = 1e-23
 Identities = 40/328 (12%), Positives = 82/328 (25%), Gaps = 64/328 (19%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           E  PP+       +  E    ++L           + W +     +  +           
Sbjct: 9   EPSPPSIHPAQSELIVEAGDTLSLTCI----DPDFVRWTFKTYFNEMVE----------- 53

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
           +  +    +  +    G YT    N    +     + V    P K  +      +   E 
Sbjct: 54  NKKNEWIQEKAEATRTGTYTCSNSNGLTSS-----IYVFVRDPAKLFL--VGLPLFGKED 106

Query: 129 ESAVLSVQVGGEPSPKVEWYK-DGKLIKD--RQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
             A++   +      +    + DGK +      + + K   T+  ++     +       
Sbjct: 107 SDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVK-RAYHRLCVRCAA 165

Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
                 + S                              TL+V       P +  P    
Sbjct: 166 QRDGTWLHSDK---------------------------FTLKVREAIKAIPVVSVPETSH 198

Query: 246 SITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTH----------TLTLIQ 294
            + +G++  +   +     S    W K     +        + H          TLT+  
Sbjct: 199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
               D G +     N  G+      L V
Sbjct: 259 ARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 97.9 bits (243), Expect = 1e-22
 Identities = 39/325 (12%), Positives = 83/325 (25%), Gaps = 64/325 (19%)

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 168
           G+P  PSI     ++ +  G++  L+          V W       +      E   +  
Sbjct: 8   GEPSPPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEM----VENKKNEW 59

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
              +      G Y+   +N      S+  + V                            
Sbjct: 60  IQEKAEATRTGTYTCSNSNGLT---SSIYVFV---------------------------- 88

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD--RQITSEK 285
                +   +      +   E   A++   +      +    + DGK +      + + K
Sbjct: 89  ----RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPK 144

Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNVDQGKA---EFIKKLDDLEVKER 341
              T+  ++     +             + S    L V +                +K+ 
Sbjct: 145 AGITIKNVK-RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203

Query: 342 ENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRK-------LLIRNISVHD 392
           +   +   +       +  W K   + +   +V                 L I +  V D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263

Query: 393 EGEYTC----SLPDQETSAELNVVE 413
            G + C    +      +  L VVE
Sbjct: 264 SGVFMCYANNTFGSANVTTTLKVVE 288

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 87.5 bits (216), Expect = 5e-19
 Identities = 47/330 (14%), Positives = 83/330 (25%), Gaps = 70/330 (21%)

Query: 334 DDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDE 393
            +L V+  +   L          V+W       +  +           + +         
Sbjct: 20  SELIVEAGDTLSLTCIDPDF---VRWTFKTYFNEMVE-------NKKNEWIQEKAEATRT 69

Query: 394 GEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYK-D 451
           G YTCS  +  TS+    V  P ++ +    +    D  A     LT          + D
Sbjct: 70  GTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD 129

Query: 452 GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFL 511
           GK +    ++T   + K    I             C     G        T++       
Sbjct: 130 GKSL--PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLK------- 180

Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
                V                                         P+         +K
Sbjct: 181 -----VREAIKA----------------------------------IPVVSVPETSHLLK 201

Query: 572 EKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-------ILELKEADS 623
           +  T  ++  +K      + +W + N       + +                L +  A  
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA-R 260

Query: 624 ETDAGDYKVVATNELGSATHGARVTVDVEK 653
             D+G +   A N  GSA     + V VEK
Sbjct: 261 VDDSGVFMCYANNTFGSANVTTTLKV-VEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 42/329 (12%), Positives = 72/329 (21%), Gaps = 104/329 (31%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
           PP I     ++ V   +  S           V+W                ++ KK + I 
Sbjct: 12  PPSIHPAQSELIVEAGDTLSLTCI---DPDFVRWTFKT-------YFNEMVENKKNEWIQ 61

Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
             A     G Y+C    +    S   + V  PA  FL  LP                   
Sbjct: 62  EKAEATRTGTYTCSN--SNGLTSSIYVFVRDPAKLFLVGLPL------------------ 101

Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
                                               KE     +   +            
Sbjct: 102 ----------------------------------FGKEDSDALVRCPLTDPQVSQYSLIE 127

Query: 595 NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 654
            +   L  P            + +K           +  A  + G+  H  + T+ V + 
Sbjct: 128 CDGKSL--PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD-GTWLHSDKFTLKVREA 184

Query: 655 GRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKI 714
            +                                     PV+  P    + +KKG+   +
Sbjct: 185 IKAI-----------------------------------PVVSVPETSHL-LKKGDTFTV 208

Query: 715 EVRFKALPPP-KAEWTVNGTVIVPSKRVK 742
               K +     + W           +VK
Sbjct: 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVK 237

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  100 bits (252), Expect = 9e-26
 Identities = 27/93 (29%), Positives = 42/93 (45%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 167
           +G    PS    L D ++ EG+  VL   V G P P++ W  +G+ I+  + T E     
Sbjct: 6   SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE 65

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           L +     +D G Y+    N  G V  +A + V
Sbjct: 66  LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  100 bits (252), Expect = 9e-26
 Identities = 27/93 (29%), Positives = 42/93 (45%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
           +G    PS    L D ++ EG+  VL   V G P P++ W  +G+ I+  + T E     
Sbjct: 6   SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE 65

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           L +     +D G Y+    N  G V  +A + V
Sbjct: 66  LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
            AP F    ++  V E     L   V+ +P P I W  N +P+  +   R   +     L
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAEL 66

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +++A  E D G Y  +A N LG  +  A VTV
Sbjct: 67  HIQDALPE-DHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI 374
           S+ +  ++     F   L D  V E ++ VL+  V       + W  +GQ I+ ++    
Sbjct: 2   SSGSSGMEV-APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE 60

Query: 375 EKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
                   L I++    D G YTC    +L     SA + V
Sbjct: 61  AGVAE---LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVT 462
           +S    + E+ P  S  L+D  V   +    +  +  G     + W  +G+ I ++ +  
Sbjct: 2   SSGSSGM-EVAPSFSSVLKDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARS-- 57

Query: 463 LSIDGKKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTV 503
            + +    +L I  A  ED G Y+C      G     A +TV
Sbjct: 58  -TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 3   SLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFS 62
           S       + P+FS   K     E  +  L+  +   P P + W  NG+P+Q       +
Sbjct: 2   SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEA 61

Query: 63  DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
             +++H       I+     + G YT +A+N  G+      V V+
Sbjct: 62  GVAELH-------IQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
           S  ++    F   L D  V E ++ VL+  V       + W  N   I+
Sbjct: 5   SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ 53

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  100 bits (251), Expect = 1e-25
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
             E P I E +   ++ +G  A   V+V G+P P+ EWYK+G  I+          E N 
Sbjct: 2   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGK 326
             L +   + +D     VK  N  G   S A L V Q K
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV-QAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  100 bits (250), Expect = 2e-25
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 165
             E P I E +   ++ +G  A   V+V G+P P+ EWYK+G  I+          E N 
Sbjct: 2   SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             L +   + +D     VK  N  G   S A L V
Sbjct: 62  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 90.8 bits (226), Expect = 4e-22
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 615
           +AP   ER + +TV +        +V   P P   W++N   +  S +    +  +N+  
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           L +++   E D+    V A N  G  +  A + V
Sbjct: 64  LVIRDVTGE-DSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI-EKKGTIRKLLI 385
           +  +++    V +  +A   V V      + +W+K+G +I+ S ++     +  + +L+I
Sbjct: 7   KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 66

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNV 411
           R+++  D             +  + A L V
Sbjct: 67  RDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSY 70
           P   ++ +     + S+    VR+V  P+P+  WY NG  ++ +D +  +  + ++   
Sbjct: 5  APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE- 63

Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA 98
             + I+ +   +     V A N  GE 
Sbjct: 64 ---LVIRDVTGEDSASIMVKAINIAGET 88

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
            P+I   +Q   V +   A F + +  G      +WYK+G +I  S+ +     +    +
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 472 LIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
           L+I     ED+     + +   G+  S A L V+A
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
           +  +++    V +  +A   V V      + +W+KN   I+
Sbjct: 7   KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE 47

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score =  100 bits (250), Expect = 2e-25
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 413 ELPPEISVP--LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
             P  I  P     +  +  E+     EL++ D    WYKDG+++  SE + + +DG+K 
Sbjct: 6   SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKH 65

Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAV 508
           +LI+  A ++D+GE+ CR        +   +TV+ P+ 
Sbjct: 66  RLILPEAKVQDSGEFECRT---EGVSAFFGVTVQDPSG 100

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 97.5 bits (243), Expect = 2e-24
 Identities = 20/89 (22%), Positives = 37/89 (41%)

Query: 331 KKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISV 390
           +    L     E  VL  E++       W+KDGQ+++ S+ + ++  G   +L++    V
Sbjct: 15  QDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74

Query: 391 HDEGEYTCSLPDQETSAELNVVELPPEIS 419
            D GE+ C          + V +     S
Sbjct: 75  QDSGEFECRTEGVSAFFGVTVQDPSGPSS 103

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 163
            +  P      +    ++ T  E  VL+ ++         WYKDG+ +++     +  + 
Sbjct: 4   GSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDG 62

Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
             H L L +   +D G +  +       V +   + V            PS P 
Sbjct: 63  RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTV----------QDPSGPS 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
            +  P      +    ++ T  E  VL+ ++         WYKDG+ +++     +  + 
Sbjct: 4   GSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDG 62

Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             H L L +   +D G +  +       V +   + V
Sbjct: 63  RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTV 95

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 554 SPGQAPLFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           S    P+ I   ++K   T      + L  ++ +       W+++ + +  S       D
Sbjct: 3   SGSSGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMD 61

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSAT 642
           G    L L EA  + D+G+++           
Sbjct: 62  GRKHRLILPEAKVQ-DSGEFECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 14  TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
              +    +    +  V L    ++  +    WY +G+ ++E++ +V       H     
Sbjct: 12  LSPQDKVSLTFTTSERVVLTCE-LSRVDFPATWYKDGQKVEESELLVVKMDGRKHR---- 66

Query: 74  VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
           + +   K ++ G +    +       + +        P  PS
Sbjct: 67  LILPEAKVQDSGEFECRTEGVSAFFGVTVQD------PSGPS 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 749 KKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           +    L     E  VL  E++       W+K+   ++
Sbjct: 15  QDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVE 51

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score =  100 bits (250), Expect = 2e-25
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI--AFSENVTLSIDGKKQKL 472
              ++  L+D      E+   E E+++ DA VKW+K+G+EI         + ++GKK  L
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPA 507
           II  A   DA EYS         +S A L+V+  +
Sbjct: 67  IIEGATKADAAEYSVMTTGG---QSSAKLSVDLKS 98

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKT--S 369
           G+  S+             K+L+D      E   LE EV+ D A+VKWFK+G+EI     
Sbjct: 1   GSSGSSG--------IMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK 52

Query: 370 KKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
            +  I  +G    L+I   +  D  EY+      ++SA+L+V     
Sbjct: 53  SRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDLKSG 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSE 162
           +       + + L D +   GE   L  +V       V+W+K+G+ I        +I  E
Sbjct: 2   SSGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE 60

Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
              H L +   +  D   YSV  T  + +    A L+V      + K  P S
Sbjct: 61  GKKHILIIEGATKADAAEYSVMTTGGQSS----AKLSV------DLKSGPSS 102

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSE 284
           +       + + L D +   GE   L  +V       V+W+K+G+ I        +I  E
Sbjct: 2   SSGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE 60

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
              H L +   +  D   YSV  T  + +    A L+VD
Sbjct: 61  GKKHILIIEGATKADAAEYSVMTTGGQSS----AKLSVD 95

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 553 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-- 609
           GS G + +   ++ E+ T      + L  +V +    ++ WF+N + ++  PK R     
Sbjct: 1   GSSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV 59

Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           +G+  IL ++ A    DA +Y V+ T    S    A+++VD+
Sbjct: 60  EGKKHILIIEGATKA-DAAEYSVMTTGGQSS----AKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ--ETDEVVFSDQSDMHS 69
               +K+ +   A     V LE   V+  + ++ W+ NGE +            +   H 
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
               + I+   K +   Y+V+    +  AK+ + +K 
Sbjct: 66  ----LIIEGATKADAAEYSVMTTGGQSSAKLSVDLKS 98

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
               K+L+D      E   LE EV+ D A+VKWFKN   I 
Sbjct: 8   IMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEII 48

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  103 bits (258), Expect = 2e-25
 Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 17/200 (8%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVF-----SDQS 65
              F      +        TL  +L      P++ W  +G+ L+  D          D+ 
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 66  DMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHDVS 124
           D    VS + I S++  + G Y  +              V +       P  LE   D +
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE----GLPYFLEEPEDRT 117

Query: 125 ITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
           +       LS Q  G P P  + W +D   +     T+  +    +L          +S 
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPL----ATAPGHGPQRSLHVPGLNKTSSFSC 173

Query: 184 KVTNKEGTVESA-ANLNVDP 202
           +  N +G   S  A + V P
Sbjct: 174 EAHNAKGVTTSRTATITVLP 193

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  100 bits (250), Expect = 2e-24
 Identities = 40/227 (17%), Positives = 71/227 (31%), Gaps = 52/227 (22%)

Query: 112 EKPSILEPLHDVSITEGESAVL--SVQVGGEPSPKVEWYKDGKLIK------------DR 157
           E+   +    +++   G +  L   +QV GEP P+V W +DG++++            + 
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGED 59

Query: 158 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
           +         L +      D G+Y   V     T  S                       
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPG-------------------- 99

Query: 218 YVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLI 276
                   + +       P  LE   D ++       LS Q  G P P  + W +D   +
Sbjct: 100 -------YVGLE----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148

Query: 277 KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
                T+  +    +L          +S +  N +G   S  A + V
Sbjct: 149 ----ATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 85.3 bits (211), Expect = 3e-19
 Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 28/198 (14%)

Query: 329 FIKKLDDLEVKERENAVLE--VEVTSDKADVKWFKDGQEIKTSKKVTIEKKG-------- 378
           F+    ++         L   ++V  +  +V W +DGQ ++ +     +           
Sbjct: 5   FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64

Query: 379 -TIRKLLIRNISVHDEGEYTC---SLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKA 433
             + +L I ++ + D G+Y C          S    V +E  P      +D  V+ +   
Sbjct: 65  IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124

Query: 434 SFEIELTKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
           +   +  +G      + W +D   +A       +  G   +  +   GL     +SC   
Sbjct: 125 NLSCQ-AQGPPEPVDLLWLQDAVPLA-------TAPGHGPQRSLHVPGLNKTSSFSCEAH 176

Query: 491 -DTGDKESK-ATLTVEAP 506
              G   S+ AT+TV   
Sbjct: 177 NAKGVTTSRTATITVLPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 81.9 bits (202), Expect = 6e-18
 Identities = 39/250 (15%), Positives = 70/250 (28%), Gaps = 75/250 (30%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQK- 471
                    ++  +R    +   +L        V W +DG+ +  +++    +   + + 
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 472 --------LIIFSAGLEDAGEYSCRVGDT-GDKES-KATLTVEAPAVEFLTKLPSVTLVP 521
                   L I S  L D G+Y C V        S    + +E                 
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL--------------- 106

Query: 522 HLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
                                                P F+E  E++TV       L  +
Sbjct: 107 -------------------------------------PYFLEEPEDRTVAANTPFNLSCQ 129

Query: 582 VKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640
            +  P P  ++W ++  PL ++P       G    L +           +   A N  G 
Sbjct: 130 AQGPPEPVDLLWLQDAVPLATAPG-----HGPQRSLHV---PGLNKTSSFSCEAHNAKGV 181

Query: 641 AT-HGARVTV 649
            T   A +TV
Sbjct: 182 TTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           +   F+      T     T  L  +++     P + W R+ + L  +   +         
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 616 LELKEADS--------ETDAGDYKVVATNELGSA-THGARVTVDV 651
            +     S         +D G Y+ +      +  +    V ++ 
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 12/99 (12%)

Query: 1   ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEV 59
            S    +     P F ++ +      N+   L  +    PEP DLLW  +  PL      
Sbjct: 95  VSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG- 153

Query: 60  VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
                   H     + +  +   +   ++  A N +G  
Sbjct: 154 --------HGPQRSLHVPGL--NKTSSFSCEAHNAKGVT 182

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 99.8 bits (249), Expect = 3e-25
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRK 382
           G     K+L  +EV E E+   E  ++ + A     W   G+ + +S +    ++G    
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66

Query: 383 LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
           L++R  +  D GE   S+    + A L V E     S
Sbjct: 67  LVVREAAPSDAGEVVFSVRGLTSKASLIVRERSGPSS 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 97.8 bits (244), Expect = 1e-24
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
              I+  L+ ++V   E  SFE  L+   A     W   GK +  S     +  G+K  L
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
           ++  A   DAGE    V       SKA+L V   
Sbjct: 68  VVREAAPSDAGEVVFSVRGL---TSKASLIVRER 98

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 17/113 (15%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEK 163
           +G      I + L  + + EGES      +     S    W   GK +      Q T + 
Sbjct: 3   SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62

Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
             + L + + +  D G     V      + S A+L V              P 
Sbjct: 63  RKYILVVREAAPSDAGEVVFSV----RGLTSKASLIV---------RERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEK 285
           +G      I + L  + + EGES      +     S    W   GK +      Q T + 
Sbjct: 3   SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62

Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             + L + + +  D G     V      + S A+L V
Sbjct: 63  RKYILVVREAAPSDAGEVVFSV----RGLTSKASLIV 95

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIF 609
           GS G +      +R +   V E  +      +   S +   +W    K + SS + +   
Sbjct: 1   GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR 60

Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSAT 642
            G   IL ++EA    DAG+           A+
Sbjct: 61  QGRKYILVVREAAPS-DAGEVVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 10/89 (11%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
              +K+ K +   E    + E  L         +W   G+ +  +     + Q   +  
Sbjct: 8  HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI- 66

Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAK 99
             + ++     + G      +    +A 
Sbjct: 67 ---LVVREAAPSDAGEVVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKNNSLIK 785
           S    G     K+L  +EV E E+   E  ++ + A     W      + 
Sbjct: 2   SSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG 51

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 99.3 bits (248), Expect = 3e-25
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTL 168
            KP I+  L D +++    A  +V+  GEP P   W KDGK I      +++ +K    L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            + +  T D G Y+  V N  G+V S+  L +
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 99.3 bits (248), Expect = 3e-25
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTL 290
            KP I+  L D +++    A  +V+  GEP P   W KDGK I      +++ +K    L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            + +  T D G Y+  V N  G+V S+  L +
Sbjct: 65  EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
             P+ +   ++ TV      +   K    P P+ +W ++ K +    K +   D     L
Sbjct: 5   SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           E+ + D+  D+G Y     N  GS +   ++T+
Sbjct: 65  EIHKTDTS-DSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
             +  L D  V     A   V+ T + +    W KDG+ I    K  + +      L I 
Sbjct: 8   VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIH 67

Query: 387 NISVHDEGEYTC----SLPDQETSAELNV 411
                D G YTC    S     +S +L +
Sbjct: 68  KTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
           +   P I   LQD  VS D  A F ++ T G+      W KDGK I       LS D   
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61

Query: 470 QKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
             L I      D+G Y+C      G   S   LT++A
Sbjct: 62  FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P      +      +S     V+    P P  +W  +G+ + +  +   S+        
Sbjct: 6  KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF-- 63

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
            + I      + G+YT   KN  G  
Sbjct: 64 --LEIHKTDTSDSGLYTCTVKNSAGSV 88

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 689 PVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
           P+ + PVI         V      K  V+    P P A WT +G  I    + K
Sbjct: 2   PISSKPVIVTGLQD-TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYK 54

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 99.3 bits (248), Expect = 5e-25
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 164
           +     P I++   D  +  GES  L  +V G       W K  K I++    ++ + +N
Sbjct: 2   SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
              LT++    +  G Y++ V NK G+ ++  NL V        K  PP+  P
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV------VDKPDPPAGTP 108

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 286
           +     P I++   D  +  GES  L  +V G       W K  K I++    ++ + +N
Sbjct: 2   SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              LT++    +  G Y++ V NK G+ ++  NL V
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 82.8 bits (205), Expect = 3e-19
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 3/106 (2%)

Query: 553 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 611
           GS G   P  I+  E++ V+   ++ L  KV  +   +  W +  K +  S   +     
Sbjct: 1   GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 60

Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 657
               L +  A  E   G Y ++  N+LGS      +TV V+K   P
Sbjct: 61  NGSKLTILAARQE-HCGCYTLLVENKLGSRQAQVNLTV-VDKPDPP 104

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P   +  +         V L  ++         W    + +QE++ +   +  +     
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK-- 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             +TI + ++   G YT++ +N+ G  +  + + V   KP+ P+
Sbjct: 65  --LTILAARQEHCGCYTLLVENKLGSRQAQVNLTV-VDKPDPPA 105

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
           + I+  +D +V+  E+  L  +VT  +     W K  ++I+ S+ + +E      KL I 
Sbjct: 9   QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTIL 68

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELP 415
                  G YT      L  ++    L VV+ P
Sbjct: 69  AARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
            P+I    +D KV   E      ++T G       W K  K+I  SE++ +       KL
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65

Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
            I +A  E  G Y+  V    G ++++  LTV   
Sbjct: 66  TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
            + P I   P     V+ GE +++  +     P    W      I  S+ +K
Sbjct: 5   SSGPQIIQFPED-QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMK 55

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 98.5 bits (246), Expect = 6e-25
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 286
           G    P+    L D S+ EG+  ++S++V GEP P V W ++ + ++         +E  
Sbjct: 1   GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGK 326
              L ++     D G Y+ K  N+ G  +  A L V +G+
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV-RGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 164
           G    P+    L D S+ EG+  ++S++V GEP P V W ++ + ++         +E  
Sbjct: 1   GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              L ++     D G Y+ K  N+ G  +  A L V
Sbjct: 61  LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 87.7 bits (218), Expect = 4e-21
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 616
            P F     +++V+E   + +  +V+  P P + W RN +P+    ++     +G    L
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +  A+   DAG Y   A NE G+    AR+ V
Sbjct: 65  RILAAERG-DAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 323 DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGTI 380
            +    F   L D  V+E ++ ++ + V  + K  V W ++ Q ++   ++   E +G +
Sbjct: 2   SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61

Query: 381 RKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
            +L I      D G YTC        ++  A L V
Sbjct: 62  CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
           PP   V L D  V   +     I +  G+   +V W ++ + +   +       +G   +
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 472 LIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
           L I +A   DAG Y+C+ V + G ++ +A L V  
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
          PPTF          E  +V + +R+   P+P + W  N +P++        +       +
Sbjct: 5  PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG---GL 61

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
            + I + ++ + G YT  A N  G  
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGAR 88

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
            F   L D  V+E ++ ++ + V  + K  V W +N   ++
Sbjct: 7   TFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR 47

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 98.6 bits (246), Expect = 6e-25
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTI 380
           G    +  L+D +V   +   + VEV+ + A V W K+G E+        +   +K G  
Sbjct: 7   GPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 381 RKLLIRNISVHDEGEYTCSLPDQETSAELNVVE 413
             L+  ++   D G Y       +  AEL V E
Sbjct: 67  HILIFSDVVQEDRGRYQVITNGGQCEAELIVEE 99

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 95.5 bits (238), Expect = 7e-24
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSEN----VTLSIDGK 468
             P  I  PL+D +V   ++    +E+++  A V W K+G E+   ++         DGK
Sbjct: 6   SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 469 KQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
           +  LI      ED G Y          + +A L VE  
Sbjct: 66  RHILIFSDVVQEDRGRYQVIT---NGGQCEAELIVEEK 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 14/106 (13%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------QIT 160
           +G      I+ PL D  +  G+   ++V+V  E   +V W K+G  +          +  
Sbjct: 3   SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61

Query: 161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
            +   H L       +D+GRY V     +      A L V+  E +
Sbjct: 62  KDGKRHILIFSDVVQEDRGRYQVITNGGQCE----AELIVE--EKQ 101

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 75.8 bits (187), Expect = 6e-17
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------QIT 282
           +G      I+ PL D  +  G+   ++V+V  E   +V W K+G  +          +  
Sbjct: 3   SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
            +   H L       +D+GRY V     +      A L V+
Sbjct: 62  KDGKRHILIFSDVVQEDRGRYQVITNGGQCE----AELIVE 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKR 606
           GS G +   L +   E++ V     + +  +V +     ++W +N   L        + R
Sbjct: 1   GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR 59

Query: 607 EIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642
              DG+  IL   +   E D G Y+V+       A 
Sbjct: 60  FKKDGKRHILIFSDVVQE-DRGRYQVITNGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
          P       +         V + V  V+     ++W  NG  L   D      +       
Sbjct: 8  PVLIVTPLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
           I+    + + + G Y V+    + EA+
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           S    G    +  L+D +V   +   + VEV+ + A V W KN   + 
Sbjct: 2   SSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELT 49

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 98.6 bits (246), Expect = 8e-25
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 327 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
           A+      +++ +   +A L  EV   + +V W+KDG+++ +S KV +E  G  R+L+++
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQ 71

Query: 387 NISVHDEGEYTCSLPDQETSAELNV 411
                + GEY+C    Q+ S  L V
Sbjct: 72  QAGQAEAGEYSCEAGGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 97.5 bits (243), Expect = 1e-24
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 402 DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENV 461
              +S ++   +  P      ++V+      A+   E+ +    V WYKDGK+++ S  V
Sbjct: 2   SSGSSGKVVFAKEQP----AHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKV 57

Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
            +   G  ++L++  AG  +AGEYSC  G     +    L V  
Sbjct: 58  RVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ---QLSFRLQVAG 98

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 77.1 bits (190), Expect = 2e-17
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 286
           +GK           +V    G SA LS +V      +V WYKDGK +      ++ +   
Sbjct: 6   SGKVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGC 64

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA 327
           T  L + Q    + G YS +     G  + +  L V  G+ 
Sbjct: 65  TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV-AGQC 100

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 164
           +GK           +V    G SA LS +V      +V WYKDGK +      ++ +   
Sbjct: 6   SGKVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGC 64

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           T  L + Q    + G YS +     G  + +  L V
Sbjct: 65  TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           +        + V AE  +  TL    VA  + ++ WY +G+ L  + +V           
Sbjct: 10  VFAKEQPAHREVQAEAGASATLSCE-VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR- 67

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102
              + ++   + E G Y+  A  ++   ++ +
Sbjct: 68  ---LVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 58.6 bits (142), Expect = 8e-11
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
                   E   +   +  L  +V A     + W+++ K L SS K R    G    L +
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 619 KEADSETDAGDYKVVATNELGSAT 642
           ++A  + +AG+Y   A  +  S  
Sbjct: 71  QQA-GQAEAGEYSCEAGGQQLSFR 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           A+      +++ +   +A L  EV   + +V W+K+   + 
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLS 52

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLT 291
              IL     +++ EGESA  S    GEP P V W + G+++      Q+T+ K   T  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
           +      D+G YSV V N EG  E+   L + +
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 97.0 bits (242), Expect = 3e-24
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLT 169
              IL     +++ EGESA  S    GEP P V W + G+++      Q+T+ K   T  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           +      D+G YSV V N EG  E+   L +
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 84.3 bits (209), Expect = 8e-20
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
               A   + +    TV E  + R        P P++ W R  + L +S + +       
Sbjct: 10  KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
              E+    +  D G+Y VV  N  G       +T+
Sbjct: 70  STFEISSVQAS-DEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 403 QETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSEN 460
                  +   L   I    + + V   E A F  +   G+ +  V W + G+ ++ S  
Sbjct: 2   HHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSAR 60

Query: 461 VTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
             ++    K    I S    D G YS  V    G +E++ TLT++
Sbjct: 61  HQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
             + K   + V E E+A    +   +    V W + GQ + TS +  +          I 
Sbjct: 16  RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 75

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVE 413
           ++   DEG Y+     S   QE    L + +
Sbjct: 76  SVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
           +      K + +   E             P P + W   G+ L  +     +      +
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71

Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
                I S++  +EG Y+VV +N EG+ 
Sbjct: 72 ----FEISSVQASDEGNYSVVVENSEGKQ 96

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  102 bits (255), Expect = 4e-24
 Identities = 40/308 (12%), Positives = 89/308 (28%), Gaps = 50/308 (16%)

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSP-----KVEWYKDGKLIK--------------- 277
           +++    V    G+S  L   +           ++ W + G+                  
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 278 ------DRQITSEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDQGKAEFI 330
                   ++ +E    +L +     +D+G Y+    T  +G+      L V   K +  
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-LAKPQNT 121

Query: 331 KKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTI---RKLLI 385
            ++  +++      +     T  +  A + W  D   +  + +V     GT+      ++
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181

Query: 386 RNISVHDEGEYTCS------LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
              S  D    TC          Q  +  L V   P        +       +A+   + 
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD- 240

Query: 440 TKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDK 495
            + +       W      +               +L+I            C V    G +
Sbjct: 241 ARSNPEPTGYNWSTTMGPL--PPFAVAQ----GAQLLIRPVDKPINTTLICNVTNALGAR 294

Query: 496 ESKATLTV 503
           +++ T+ V
Sbjct: 295 QAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  100 bits (251), Expect = 1e-23
 Identities = 47/338 (13%), Positives = 91/338 (26%), Gaps = 80/338 (23%)

Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSP-----KVEWYKDGKLIK--------------- 155
           +++    V    G+S  L   +           ++ W + G+                  
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 156 ------DRQITSEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDPYEPKES 208
                   ++ +E    +L +     +D+G Y+    T  +G+      L V        
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-------- 114

Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKV 267
                                     KP     +  V +T     +      GG P  ++
Sbjct: 115 ------------------------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQI 150

Query: 268 EWYKDGKLIKDRQITSEKNTHT------LTLIQCSTKDKGRYSVKVTNK--EGTVESAAN 319
            W+ D   + +        + T        L+  S  D    + KV ++  E       N
Sbjct: 151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210

Query: 320 LNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKK 377
           L V       I   D+     +  A L  +  S+       W      +       + + 
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF---AVAQG 267

Query: 378 GTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
                LLIR +         C    +L  ++    + V
Sbjct: 268 AQ---LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 98.2 bits (244), Expect = 1e-22
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 7/191 (3%)

Query: 12  PPTFSKKTKPVYAEENSEVTLE-VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            P  + + + V            V     P   + W+ +   +  T +V     S   + 
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVP-GFLSGTVTV 175

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
            S+  +    + +    T   ++   E    + V +    P + SI     +        
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI-SGYDNNWYLGQNE 234

Query: 131 AVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
           A L+      P P    W      +    +        L +              VTN  
Sbjct: 235 ATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ---GAQLLIRPVDKPINTTLICNVTNAL 291

Query: 190 GTVESAANLNV 200
           G  ++   + V
Sbjct: 292 GARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 95.2 bits (236), Expect = 1e-21
 Identities = 48/330 (14%), Positives = 84/330 (25%), Gaps = 66/330 (20%)

Query: 22  VYAEENSEVTLEVRLVAVPEPD-----LLWYYNGEPLQ---------------ETDEVVF 61
           V       VTL   L            L W  +GE                  +  E V 
Sbjct: 10  VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69

Query: 62  SDQSDMHSYVSIVTIKSIKKREEGVYT-VVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
           +         S+  +  ++  +EG YT +     +G   +DI ++V      KP     +
Sbjct: 70  ARLGAELRNASL-RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL----AKPQNTAEV 124

Query: 121 HDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHT------LTLIQC 173
             V +T     +      GG P  ++ W+ D   + +        + T        L+  
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184

Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233
           S  D    + KV ++         +                           L V     
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTV--------------------------NLTVYY--- 215

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTL 292
                +    +        A L+      P P    W      +    +        L +
Sbjct: 216 PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ---GAQLLI 272

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                         VTN  G  ++   + V
Sbjct: 273 RPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 93.6 bits (232), Expect = 4e-21
 Identities = 48/358 (13%), Positives = 95/358 (26%), Gaps = 95/358 (26%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKAD------VKWFKDGQEIKTS-------KKVTIE 375
            ++    +     ++  L   +     +      + W + G+    +          +  
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 376 KKGTIRK-----------LLIRNISVHDEGEYTCSL---PDQETSAELNV-VELPPEISV 420
           K+                L +  + V DEG YTC     P    S ++ + V   P+ + 
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122

Query: 421 PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ---KLIIF 475
            +Q V+++ +         T G   A + W+ D   +  +  V   + G        I+ 
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182

Query: 476 SAGLEDAGEYSCRV---GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
            +   D    +C+V        +     LTV  P                          
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP-------------------------- 216

Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIV 591
                                      + I  ++      +    L    +++P P    
Sbjct: 217 -------------------------PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYN 251

Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           W     PL   P        + +I  +     +          TN LG+      V V
Sbjct: 252 WSTTMGPL---PPFAVAQGAQLLIRPV----DKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 35/333 (10%), Positives = 70/333 (21%), Gaps = 115/333 (34%)

Query: 444 ALVKWYKDGKEIA-----------FSENVTLSIDGKKQK-------LIIFSAGLEDAGEY 485
           + + W + G+  +           +SE+  L     +         L +F   +ED G Y
Sbjct: 35  SQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY 94

Query: 486 SCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLN 543
           +C       G +     L V A                                      
Sbjct: 95  TCLFVTFPQGSRSVDIWLRVLAK------------------------------------- 117

Query: 544 LFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSS 602
                          P      ++  +  +             P   I W  +   + ++
Sbjct: 118 ---------------PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162

Query: 603 PKKREIFDGENIILEL--KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
            +      G   +  L      S+ D  +      +E         V + V       I 
Sbjct: 163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI- 221

Query: 661 SIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA 720
                                                             +  +    ++
Sbjct: 222 --------------------------------------SGYDNNWYLGQNEATLTCDARS 243

Query: 721 LPPPKA-EWTVNGTVIVPSKRVKGKAEFIKKLD 752
            P P    W+     + P    +G    I+ +D
Sbjct: 244 NPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVD 276

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 96.2 bits (240), Expect = 4e-24
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 164
           G    P  ++   ++SI EG    +  +V G P+P V WY +G+ ++     + I SEK 
Sbjct: 1   GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
            H+L        D G Y+    N+ G       L+V   E
Sbjct: 61  LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 286
           G    P  ++   ++SI EG    +  +V G P+P V WY +G+ ++     + I SEK 
Sbjct: 1   GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            H+L        D G Y+    N+ G       L+V
Sbjct: 61  LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
               P FI+  E  ++ E    R+  KV   PAP + W+ N + + S    + I   + +
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61

Query: 615 I-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
             L  +     +DAG Y  VA N  G AT   ++ V  ++
Sbjct: 62  HSLIFEVV-RASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSY 70
          PP F +  + +  +E     ++ ++  +P PD+ WY NG  +Q  D   +   +  +HS 
Sbjct: 5  PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS- 63

Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA 98
             +  + ++  + G Y  VAKNR GEA
Sbjct: 64 ---LIFEVVRASDAGAYACVAKNRAGEA 88

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE-KKGTIRKLLI 385
            FI+  +++ + E     ++ +V+     DV W+ +G+ +++     +   +  +  L+ 
Sbjct: 7   RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIF 66

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVE 413
             +   D G Y C       +   + +L+V+ 
Sbjct: 67  EVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
           PP      +++ +        + +++ G     V WY +G+ +   +   + + +     
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 472 LIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
           LI       DAG Y+C      G+      L V A
Sbjct: 64  LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
            FI+  +++ + E     ++ +V+     DV W+ N   ++
Sbjct: 7   RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ 47

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  100 bits (249), Expect = 4e-24
 Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 22/211 (10%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
            +       V   EN  + L         P + W +                +     V+
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 73  IV----TIKSIKKREEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
                 T  S+ +++ G YT +     G+   ++ I + V       PS        S+T
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL----VPPSKPTISVPSSVT 117

Query: 127 EGESAVLSVQVG-GEPSPKVEWYKDGKLI-----------KDRQITSEKNTHTLTLIQCS 174
            G  AVL+     G P  +  W+KDG  +            +   T +  +  L     +
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177

Query: 175 TKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
             D G Y  +  N  GT   +   ++D  E 
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 208

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 99.7 bits (248), Expect = 7e-24
 Identities = 46/234 (19%), Positives = 75/234 (32%), Gaps = 53/234 (22%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-----------DGKLIKDRQITS 161
           K S+     DV + E ES  L+    G  SP+VEW             + ++        
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
             ++  +T    + KD G Y+  V+ + G      ++                       
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI----------------------- 97

Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLI---- 276
               L V       PS        S+T G  AVL+     G P  +  W+KDG  +    
Sbjct: 98  ---HLTVL----VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150

Query: 277 -------KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
                   +   T +  +  L     +  D G Y  +  N  GT   +   ++D
Sbjct: 151 AKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 90.0 bits (223), Expect = 1e-20
 Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 25/208 (12%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK-- 382
           K        D++V E E+  L    +      V+W               +         
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 383 ------LLIRNISVHDEGEYTC----SLPDQETSAELNV-VELPPEISVPLQDVKVSRDE 431
                 +   +++  D GEYTC              +++ V +PP          V+   
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120

Query: 432 KASFEIELTKGD--ALVKWYKDGKEIAFSE--------NVTLSIDGKKQKLIIFSAGLED 481
           +A        G   +   W+KDG  +  ++        N + +ID K   LI       D
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 180

Query: 482 AGEYSCRVG-DTGDKESKATLTVEAPAV 508
           +GEY C+     G         ++A  +
Sbjct: 181 SGEYYCQAQNGYGTAMRSEAAHMDAVEL 208

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 70.4 bits (172), Expect = 7e-14
 Identities = 40/258 (15%), Positives = 62/258 (24%), Gaps = 76/258 (29%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQK-- 471
             +     DV+V  +E        + G +   V+W                I        
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 472 ------LIIFSAGLEDAGEYSCRV---GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
                 +   S   +D GEY+C V   G     E    LTV  P                
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP---------------- 104

Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
                                               P         +V       L    
Sbjct: 105 ------------------------------------PSKPTISVPSSVTIGNRAVLTCSE 128

Query: 583 -KASPAPSIVWFRNNKPLLSSPKK--------REIFDGENIILELKEADSETDAGDYKVV 633
              SP     WF++   +L++  K            D ++  L      +  D+G+Y   
Sbjct: 129 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFDSGEYYCQ 187

Query: 634 ATNELGSATHGARVTVDV 651
           A N  G+A       +D 
Sbjct: 188 AQNGYGTAMRSEAAHMDA 205

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 52.7 bits (126), Expect = 7e-08
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 5/102 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSD--- 66
           +PP+    + P      +   L        P  +  W+ +G  +   D        +   
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162

Query: 67  -MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
            +      +    +   + G Y   A+N  G A       ++
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 24/195 (12%), Positives = 44/195 (22%), Gaps = 54/195 (27%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN----------NKPLLSSPKKREI 608
                   +  V E  +I+L        +P + W             N  + +    R  
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNH 668
           F      +      +  D G+Y  + + E G       + +                   
Sbjct: 62  FSSSG--ITFSSV-TRKDNGEYTCMVSEEGGQNYGEVSIHLT------------------ 100

Query: 669 VHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE-VRFKALPPPKAE 727
                                V   P   P       V  G    +        PP +  
Sbjct: 101 ---------------------VLVPPSK-PTISVPSSVTIGNRAVLTCSEHDGSPPSEYS 138

Query: 728 WTVNGTVIVPSKRVK 742
           W  +G  ++ +   K
Sbjct: 139 WFKDGISMLTADAKK 153

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 95.9 bits (239), Expect = 7e-24
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 165
              +P  L+   D+++ EG+   +  +V G P+P + W  DGK ++     + +  E   
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
           H+L +   +++D G Y+   TN+ G    +  L V       +KE+ PS
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV------AAKESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
              +P  L+   D+++ EG+   +  +V G P+P + W  DGK ++     + +  E   
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           H+L +   +++D G Y+   TN+ G    +  L V 
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
           GS G  P F++   + TV+E    R+  KV   P P + W  + KP+      + +    
Sbjct: 4   GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63

Query: 613 NII-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
            +  L ++   S  DAG Y  +ATN  G  +    + V  +
Sbjct: 64  GVHSLIIEPVTSR-DAGIYTCIATNRAGQNSFSLELVVAAK 103

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 76.3 bits (188), Expect = 6e-17
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 9   EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDM 67
            G  P F +    +  +E     ++ ++  +P PDL W  +G+P++      +   ++ +
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
           HS    + I+ +  R+ G+YT +A NR G+    + + V   K   PS
Sbjct: 66  HS----LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA-AKESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE-KKGTIRKLLI 385
            F++   DL V+E +   ++ +V+     D+ W  DG+ ++      +  ++  +  L+I
Sbjct: 11  HFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLII 70

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
             ++  D G YTC           S EL V       S
Sbjct: 71  EPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
            P       D+ V   +    + +++ G     + W  DGK +       + + +     
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67

Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
           LII      DAG Y+C      G       L V A 
Sbjct: 68  LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  101 bits (253), Expect = 1e-23
 Identities = 50/350 (14%), Positives = 92/350 (26%), Gaps = 73/350 (20%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKLIKDRQIT--------- 160
             +++    +    G   VL              +V W K     K              
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 161 ------------SEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDPYEPKE 207
                             T+ L +   +D+G Y  +  T   G  ES  NL V       
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV------- 127

Query: 208 SKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPK 266
                 + P   +                     L      + +  V +     G+P   
Sbjct: 128 -----MAKPTNWIEGTQA---------------VLRAKKGQDDKVLVATCTSANGKPPSV 167

Query: 267 VEWYKDGK-LIKDRQITSEKNTHT----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
           V W    K   + ++I +   T T      L+      +   +  V       + +  LN
Sbjct: 168 VSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227

Query: 322 VDQGKAEF-IKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKG 378
           V Q + E  I+  D     +R +  L  +  ++    +  W      +    +       
Sbjct: 228 V-QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ---NR 283

Query: 379 TIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQD 424
           T+       I+    G Y C     +  +    E+N+ E    +      
Sbjct: 284 TL--FFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE-AAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 95.2 bits (236), Expect = 2e-21
 Identities = 52/371 (14%), Positives = 101/371 (27%), Gaps = 95/371 (25%)

Query: 317 AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKK 371
                + +  ++ ++  D +      + VL     +         V W K     K +  
Sbjct: 5   TGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVA 64

Query: 372 VTIEKKGTIRK------------------LLIRNISVHDEGEYTCSL-----PDQETSAE 408
           +     G                      + +  + + DEG Y C        ++E+   
Sbjct: 65  IYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLN 124

Query: 409 LNVVELPPEISVPLQDVKVSRDEKASFEIELT------KGDALVKWYKDGKEIAFSENVT 462
           L V+  P       Q V  ++  +    +  T      K  ++V W    K  A  + + 
Sbjct: 125 LTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR 184

Query: 463 LSIDGKKQ--KLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
                     +  +  +        +C V       +   TL V+          P VT+
Sbjct: 185 NPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE--------PEVTI 236

Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
                                                        F+     ++  ++L 
Sbjct: 237 EG-------------------------------------------FDGNWYLQRMDVKLT 253

Query: 580 AKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638
            K  A+P  +   W   N  L          + +N  L  K   + + AG Y   ATN +
Sbjct: 254 CKADANPPATEYHWTTLNGSLPKG------VEAQNRTLFFKGPINYSLAGTYICEATNPI 307

Query: 639 GSATHGARVTV 649
           G+ +    V +
Sbjct: 308 GTRSGQVEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 92.9 bits (230), Expect = 1e-20
 Identities = 45/339 (13%), Positives = 89/339 (26%), Gaps = 62/339 (18%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD----LLWYYNGEPLQET--------DEV 59
           P    +    +Y    ++V L               + W  +    ++            
Sbjct: 14  PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73

Query: 60  VFSDQSDMHSYVSI------VTIKSIKKREEGVYT-VVAKNREGEAKMDIPVKVNTGKPE 112
           V +   +   ++        + +  ++  +EGVY    A    G  +  + + V   KP 
Sbjct: 74  VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-KPT 132

Query: 113 KPSILEP--LHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGK-LIKDRQITSEKNTHT- 167
                    L      + +  V +     G+P   V W    K   + ++I +   T T 
Sbjct: 133 NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV 192

Query: 168 ---LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
                L+      +   +  V       + +  LNV  YEP+                  
Sbjct: 193 ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV-QYEPE------------------ 233

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITS 283
                         +E        +     L+ +    P   +  W      +       
Sbjct: 234 ------------VTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ 281

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             N         +    G Y  + TN  GT      +N+
Sbjct: 282 --NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 90.2 bits (223), Expect = 1e-19
 Identities = 39/315 (12%), Positives = 73/315 (23%), Gaps = 48/315 (15%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKLIKDRQIT--------- 282
             +++    +    G   VL              +V W K     K              
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 283 ------------SEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNV----DQG 325
                             T+ L +   +D+G Y  +  T   G  ES  NL V       
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKG--TIR 381
                  L   + ++ +  V      + K  + V W    +     +++         I 
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194

Query: 382 KLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
           +  +       +    C     +   + S  LNV   P             +        
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254

Query: 438 ELTKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTG 493
           +    +       W      +   + V                    AG Y C      G
Sbjct: 255 K-ADANPPATEYHWTTLNGSL--PKGVEAQNR---TLFFKGPINYSLAGTYICEATNPIG 308

Query: 494 DKESKATLTVEAPAV 508
            +  +  + +   A 
Sbjct: 309 TRSGQVEVNITEAAA 323

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 57.1 bits (137), Expect = 8e-09
 Identities = 39/370 (10%), Positives = 75/370 (20%), Gaps = 114/370 (30%)

Query: 406 SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD-----ALVKWYKDGKEI----- 455
           +    +   P ++      +                         V W K          
Sbjct: 5   TGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVA 64

Query: 456 AFSENVTLSIDGKKQK-------------LIIFSAGLEDAGEYSCRV--GDTGDKESKAT 500
            ++ ++ +S+    ++             + +    LED G Y C      TG++ES+  
Sbjct: 65  IYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLN 124

Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
           LTV A    ++       L    G     +                  TC          
Sbjct: 125 LTVMAKPTNWIE-GTQAVLRAKKGQDDKVLVA----------------TC---------- 157

Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK- 619
                                    P   + W    K      + R       +I   + 
Sbjct: 158 -------------------TSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRL 198

Query: 620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPR 679
               E        +    +        + V                              
Sbjct: 199 VPSREAHQQSLACIVNYHMDRFKESLTLNVQY---------------------------- 230

Query: 680 QSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA-EWTVNGTVIVPS 738
                         P +           +  D+K+  +  A PP     WT     +   
Sbjct: 231 -------------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG 277

Query: 739 KRVKGKAEFI 748
              + +  F 
Sbjct: 278 VEAQNRTLFF 287

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 41.7 bits (97), Expect = 7e-04
 Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 15/113 (13%)

Query: 12  PPTFS-KKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHS 69
            P  + +     +  +  +V L  +  A P   +  W      L +  E           
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA---------Q 281

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHD 122
             ++     I     G Y   A N  G     + V +     E  ++    H 
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT----EAAALEHHHHH 330

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 96.3 bits (239), Expect = 8e-23
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 28/199 (14%)

Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT------------------ 287
            + E  + +L V           WYK      D++I                        
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 288 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAV 345
             +L     + KD G Y++ +T++      A    +V Q   +   ++ +  VKE ++  
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129

Query: 346 LEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL----- 400
           L        A+++W  + Q ++ ++++T+ +      L I  I   D GEY C +     
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVS 187

Query: 401 PDQETSAELNVVELPPEIS 419
             +  S +L+++   P   
Sbjct: 188 VRRSNSIKLDIIF-DPHHH 205

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 85.5 bits (211), Expect = 4e-19
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 32/197 (16%)

Query: 337 EVKERENAVLEVEVTS-DKADVKWFKDGQEIKT-------------------SKKVTIEK 376
           +V E  N +L V           W+K                          S +  I  
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 377 KGTIRKLLIRNISVHDEGEYTCSLPD-----QETSAELNVVELPPEISVPLQDVKVSRDE 431
            G+   LL + I++ D G YT  + D      + +   +V +   +  + + +  V   +
Sbjct: 70  NGS---LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD 126

Query: 432 KASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491
             +         A ++W  + + +  +E +TLS +     L I     EDAGEY C + +
Sbjct: 127 SVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISN 184

Query: 492 T-GDKESK-ATLTVEAP 506
               + S    L +   
Sbjct: 185 PVSVRRSNSIKLDIIFD 201

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 81.6 bits (201), Expect = 1e-17
 Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 19/195 (9%)

Query: 21  PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS------DMHSYVSIV 74
           P    E++ V L V  + +      WY       + +   F   S        +S   I+
Sbjct: 8   PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67

Query: 75  ------TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                   + I  ++ GVYT+   +                   +P +   + + ++ E 
Sbjct: 68  YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFL--QVTNTTVKEL 125

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
           +S  L+          ++W  + + ++  +R   S+ N   L +     +D G Y  +++
Sbjct: 126 DSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN-SILRIDPIKREDAGEYQCEIS 183

Query: 187 NKEGTVESA-ANLNV 200
           N      S    L++
Sbjct: 184 NPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 79.3 bits (195), Expect = 6e-17
 Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 54/221 (24%)

Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT------------------ 165
            + E  + +L V           WYK      D++I                        
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 166 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
             +L     + KD G Y++ +T++      A           +                 
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT----------- 118

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT 282
                              + ++ E +S  L+          ++W  + + ++  +R   
Sbjct: 119 -------------------NTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTL 158

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
           S+ N   L +     +D G Y  +++N      S    L++
Sbjct: 159 SQNN-SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 36/272 (13%), Positives = 69/272 (25%), Gaps = 82/272 (30%)

Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQK---- 471
           E+++     +V+ D      +           WYK        E      +         
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 472 ------------LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
                       L+     ++D G Y+  + D   + ++AT+                  
Sbjct: 61  YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQ------------ 108

Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
                                                       +    TVKE  ++ L 
Sbjct: 109 -------------------------------------PVTQPFLQVTNTTVKELDSVTLT 131

Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639
                    +I W  N++ L  +   R      N IL +     E DAG+Y+   +N + 
Sbjct: 132 CLSN-DIGANIQWLFNSQSLQLTE--RMTLSQNNSILRIDPIKRE-DAGEYQCEISNPVS 187

Query: 640 SAT-HGARVTVDVEKVGRPPINSIDIDRNHVH 670
               +  ++ +        P        +H H
Sbjct: 188 VRRSNSIKLDIIF-----DP------HHHHHH 208

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 98.2 bits (244), Expect = 1e-22
 Identities = 37/309 (11%), Positives = 78/309 (25%), Gaps = 56/309 (18%)

Query: 25  EENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE 84
             +S   L           ++W    +   +              + S++T+ ++   + 
Sbjct: 13  NVSSTFVLTCS----GSAPVVWERMSQEPPQEMAKAQDGT-----FSSVLTLTNLTGLDT 63

Query: 85  GVYTVVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHD--VSITEGESAVLSVQVGGEP 141
           G Y     +  G    +   + +    P    +     +  + +TE     +  +V   P
Sbjct: 64  GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-P 122

Query: 142 SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
              V  ++    +        +   +         +   Y  K T  +  V+S A     
Sbjct: 123 QLVVTLHEKKGDVALPVPYDHQRGFSGIF------EDRSYICKTTIGDREVDSDAYYVY- 175

Query: 202 PYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG 261
                  +    S    V +                         + +GE+  L   V G
Sbjct: 176 -------RLQVSSINVSVNAV---------------------QTVVRQGENITLMCIVIG 207

Query: 262 EPSPKVEWYKDGKLIKDRQITSEKNTH--------TLTLIQCSTKDKGRYSVKVTNKEGT 313
                 EW    K                       L +     +D G Y+  VT     
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267

Query: 314 VESAANLNV 322
            +    +N+
Sbjct: 268 HQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 90.1 bits (223), Expect = 6e-20
 Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 36/288 (12%)

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--TLTLIQC 295
           +  P  ++ +    + VL+          V W +  +        ++  T    LTL   
Sbjct: 3   VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNL 58

Query: 296 STKDKGRYSVKVTNKEGTVESAA---NLNVDQGKAEFIKKLDD---LEVKERENAVLEVE 349
           +  D G Y     +  G          + V      F+    +   + + E     +   
Sbjct: 59  TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR 118

Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--SLPDQETSA 407
           VT  +  V   +   ++        ++  +            ++  Y C  ++ D+E  +
Sbjct: 119 VTDPQLVVTLHEKKGDVALPVPYDHQRGFSGI---------FEDRSYICKTTIGDREVDS 169

Query: 408 E----LNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENV 461
           +      +      +SV      V + E  +       G+     +W    KE       
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCI-VIGNEVVNFEWTYPRKESGRLVEP 228

Query: 462 TLSIDGKKQK-----LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
                          L I SA LED+G Y+C V ++  D + +  + +
Sbjct: 229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 85.1 bits (210), Expect = 2e-18
 Identities = 51/354 (14%), Positives = 101/354 (28%), Gaps = 89/354 (25%)

Query: 334 DDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDE 393
            +L +      VL    +   A V W +  QE    +    +       L + N++  D 
Sbjct: 8   PELVLNVSSTFVLTCSGS---APVVWERMSQEPP-QEMAKAQDGTFSSVLTLTNLTGLDT 63

Query: 394 GEYTCSL-----PDQETSAELNV-VELPPEISVPL----QDVKVSRDEKASFEIELTKGD 443
           GEY C+       + +    L + V  P    +P       + ++   + +    +T   
Sbjct: 64  GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQ 123

Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLT 502
            +V  ++   ++A                    +G+ +   Y C+      + +S A   
Sbjct: 124 LVVTLHEKKGDVALPVPYDHQR---------GFSGIFEDRSYICKTTIGDREVDSDAYYV 174

Query: 503 VEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI 562
                                     ++++SS ++ V                       
Sbjct: 175 Y-------------------------RLQVSSINVSVNA--------------------- 188

Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-----ILE 617
               +  V++   I LM  V  +   +  W    K      +    F  +       IL 
Sbjct: 189 ---VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILH 245

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
           +  A+ E D+G Y    T  +        + + V  V             H HH
Sbjct: 246 IPSAELE-DSGTYTCNVTESVNDHQDEKAINITV--VESGHH--------HHHH 288

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 75.9 bits (186), Expect = 3e-15
 Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 23/198 (11%)

Query: 16  SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVT 75
             +   ++  E +E+T+  R V  P+  +  +     +                      
Sbjct: 99  DAEELFIFLTEITEITIPCR-VTDPQLVVTLHEKKGDVA-------------LPVPYDHQ 144

Query: 76  IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
                  E+  Y       + E   D               +       + +GE+  L  
Sbjct: 145 RGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNA-VQTVVRQGENITLMC 203

Query: 136 QVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--------TLTLIQCSTKDKGRYSVKVTN 187
            V G      EW    K                       L +     +D G Y+  VT 
Sbjct: 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTE 263

Query: 188 KEGTVESAANLNVDPYEP 205
                +    +N+   E 
Sbjct: 264 SVNDHQDEKAINITVVES 281

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 36/321 (11%), Positives = 72/321 (22%), Gaps = 108/321 (33%)

Query: 417 EISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIF 475
            ++ P  ++ ++          LT  G A V W +  +E    E            L + 
Sbjct: 2   VVTPPGPELVLNVSS----TFVLTCSGSAPVVWERMSQEPP-QEMAKAQDGTFSSVLTLT 56

Query: 476 SAGLEDAGEYSCRV----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
           +    D GEY C      G   D+  +  + V  P V FL        +           
Sbjct: 57  NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFI----------- 105

Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
                                                 + E   I +  +V   P   + 
Sbjct: 106 -------------------------------------FLTEITEITIPCRV-TDPQLVVT 127

Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
                  +         +D +     +       +   Y    T         A     +
Sbjct: 128 LHEKKGDVALP----VPYDHQRGFSGI------FEDRSYICKTTIGDREVDSDAYYVYRL 177

Query: 652 EKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGED 711
           +        ++ ++                                     + +V++GE+
Sbjct: 178 Q----VSSINVSVN-----------------------------------AVQTVVRQGEN 198

Query: 712 LKIEVRFKALPPPKAEWTVNG 732
           + +            EWT   
Sbjct: 199 ITLMCIVIGNEVVNFEWTYPR 219

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 7   ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
            L+      S         +   +TL   ++     +  W Y  +      E V     D
Sbjct: 176 RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLD 235

Query: 67  MHSYV-SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
           M  ++ SI+ I S +  + G YT        + + +  + +
Sbjct: 236 MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLT 169
           KP IL     + I  G +  L V   G P P   W              + ++ +T ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                  D G Y +KV N+ G  E+   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLT 291
           KP IL     + I  G +  L V   G P P   W              + ++ +T ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                  D G Y +KV N+ G  E+   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
            P  +    +  +K   T  L      +P P+  W   +     +P+           + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
              A    D+G+YK+   NELG       V V
Sbjct: 62  FPSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 72.4 bits (178), Expect = 8e-16
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           + P     ++ +  +      LEV  +  P+P   W           E++   +S   S 
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS- 59

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
              +   S K+ + G Y +  KN  GE +    V V
Sbjct: 60  ---IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQK 471
           L P+I    + +K+      + E++   G       W       A +  + +        
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59

Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
           +   SA   D+G Y  +V  + G+ E+   + V+
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           K + +     +++K      LEV+          W         + ++ ++ K +   + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNV 411
             +    D G Y       L + E   E+ V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
            P I       + +K G    +EV F   P P A WTV  +    +  + 
Sbjct: 2   KPKILTASRK-IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL 50

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTL 170
             P+I   L + + + GES  +S    G P P++ W+KD + +  D  I  +     LT+
Sbjct: 9   VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE 210
            +   +D+G Y+ +  +  G  +  A   ++  + K + E
Sbjct: 69  RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 108

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 88.2 bits (219), Expect = 4e-21
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTL 292
             P+I   L + + + GES  +S    G P P++ W+KD + +  D  I  +     LT+
Sbjct: 9   VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEF 329
            +   +D+G Y+ +  +  G  +  A   + +G  E 
Sbjct: 69  RRVRKEDEGLYTCQACSVLGCAKVEAFFII-EGAQEK 104

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           AP      E +T     +I +      +P P I+WF++N+ L+       +    N  L 
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           ++    E D G Y   A + LG A   A   ++ 
Sbjct: 68  IRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIEG 100

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 70.4 bits (173), Expect = 7e-15
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 7   ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
           +LE + PT +   +         + +       P P ++W+ + E L E   +V  D   
Sbjct: 5   VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--- 61

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
                  +TI+ ++K +EG+YT  A +  G AK++    +  G  EK ++
Sbjct: 62  ---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE-GAQEKTNL 107

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 408 ELNVVEL-PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLS 464
           +L V+E   P I+  L++   S  E        + G+    + W+KD + +     + L 
Sbjct: 2   QLTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK 60

Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
                + L I     ED G Y+C+     G  + +A   +E  
Sbjct: 61  DGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
                L++      E+  +    + +    + WFKD + +     + ++     R L IR
Sbjct: 12  TITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIR 69

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISV 420
            +   DEG YTC     L   +  A   +     + ++
Sbjct: 70  RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 98.3 bits (244), Expect = 2e-22
 Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 19/224 (8%)

Query: 206 KESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP 265
           +E     P        +     +       P++   + + S+  G+  +L  QV G    
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE 188

Query: 266 KVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNVD 323
           +  W   + +       +    +  LTL   ++  ++   +    N  G  E +  +NV 
Sbjct: 189 QAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV- 247

Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK 382
                F   +      E  +  +   V       ++W  +G  +  +  +  E       
Sbjct: 248 ----SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 303

Query: 383 -------LLIRNISVHDEGEYTC----SLPDQETSAELNVVELP 415
                  L +   +  + G YT            S     ++ P
Sbjct: 304 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 92.5 bits (229), Expect = 2e-20
 Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 23/198 (11%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
           PT   +      +   +V L  ++         W         T       +S     + 
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-----VMKSGGLPSLG 213

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAV 132
           +              T  A+N  G A++ + V V        S    +   +  E     
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV--------SFPASVQLHTAVEMHHWC 265

Query: 133 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH----------TLTLIQCSTKDKGRYS 182
           +   V G+P+P + W  +G ++ +      +              L L Q +  + G Y+
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325

Query: 183 VKVTNKEGTVESAANLNV 200
           +   N  G   ++     
Sbjct: 326 LLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 91.3 bits (226), Expect = 6e-20
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 48/223 (21%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTL 170
             P++   + + S+  G+  +L  QV G    +  W   + +       +    +  LTL
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216

Query: 171 IQCSTK-DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
              ++  ++   +    N  G  E +  +NV                             
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV----------------------------- 247

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH- 288
                  S    +   +  E     +   V G+P+P + W  +G ++ +      +    
Sbjct: 248 -------SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP 300

Query: 289 ---------TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                     L L Q +  + G Y++   N  G   ++     
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 9e-14
 Identities = 23/195 (11%), Positives = 46/195 (23%), Gaps = 24/195 (12%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI-KTSKKVTIEKKGTIRKLLI 385
               ++ +  V   ++ +L  +V         W     E   T  K        +   L 
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL--TLA 217

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
              S  +    TC     +   E S ++NV           Q               +  
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-----QLHTAVEMHHWCIPFSVD- 271

Query: 442 GD--ALVKWYKDGKEIAFSENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRV-GD 491
           G     ++W  +G  +  +  +                 L +      + G Y+      
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331

Query: 492 TGDKESKATLTVEAP 506
            G   +         
Sbjct: 332 FGQASASIMAAFMDN 346

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 31/244 (12%), Positives = 56/244 (22%), Gaps = 69/244 (28%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEI-AFSENVTLSIDGKKQKL 472
           P + V + +  V   +      +  +G  L    W     E  A                
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQ-VEGRGLEQAGWILTELEQSATVMKSGGLPSLGL--T 215

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
           +       +    +C   +                               +G A   V++
Sbjct: 216 LANVTSDLNRKNVTCWAEN------------------------------DVGRAEVSVQV 245

Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
                                       F    +  T  E     +   V   PAPS+ W
Sbjct: 246 -------------------------NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280

Query: 593 FRNNKPLLSSPKKRE-------IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
             N   L  +                 +  L L +  +  + G+Y ++A N  G A+   
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLAANPFGQASASI 339

Query: 646 RVTV 649
               
Sbjct: 340 MAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.9 bits (147), Expect = 5e-10
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
             P    +    +V     + L  +V+        W        ++  K       ++ L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL--PSLGL 214

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
            L    S+ +  +    A N++G A     V V+V      P +        +HH 
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAE--VSVQVNV----SFPASVQLHTAVEMHHW 264

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 7/107 (6%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           +  +F    +   A E     +   +   P P L W +NG  L ET  +         + 
Sbjct: 245 VNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 304

Query: 71  V---SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP 114
                 + +        G YT++A N  G+A   I         + P
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM----DNP 347

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 90.5 bits (225), Expect = 7e-22
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT- 287
               P  +       + EG+S  L  Q+   P PK+ W ++ ++++   DR    + NT 
Sbjct: 12  HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71

Query: 288 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIK 331
             TL +   + KD G Y+V   N+ G       L+V   +     
Sbjct: 72  RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV-TARPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 90.1 bits (224), Expect = 9e-22
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT- 165
               P  +       + EG+S  L  Q+   P PK+ W ++ ++++   DR    + NT 
Sbjct: 12  HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71

Query: 166 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
             TL +   + KD G Y+V   N+ G       L+V           P    P
Sbjct: 72  RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV--------TARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 82.8 bits (205), Expect = 3e-19
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 612
             +AP+FI + + K V E  +++L  ++ A P P + W RNN+ +  +  +  ++  +  
Sbjct: 12  HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71

Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
            + L +K+ + + DAG Y V A NE G  T   R+ V  
Sbjct: 72  RVTLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS--KKVTIEKKGTIRKLL 384
            FI K    +V E ++  LE ++++     + W ++ + ++ +  +    +       LL
Sbjct: 17  MFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLL 76

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP 421
           I++++  D G YT            +  L+V    P  ++P
Sbjct: 77  IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA-RPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDMHS 69
            P F  K +     E   V LE ++ A+P P L W  N E +Q   +   ++ D +   +
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
               + IK + K++ G YTV A N  G    +  + V      +P+   P
Sbjct: 75  ----LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT----ARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSEN--VTLSIDG 467
            +  P      Q  KV   +    E +++       + W ++ + + F+ +       + 
Sbjct: 12  HKRAPMFIYKPQSKKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70

Query: 468 KKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAP 506
            +  L+I     +DAG Y+   V + G       L V A 
Sbjct: 71  GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 86.6 bits (215), Expect = 8e-21
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK---DRQITSEKNTHTLTLI 293
           +   +      EG       ++       +V WY   + ++     +IT E     L + 
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE 328
             +  D G Y  KV N  G   S A L V +G  E
Sbjct: 64  DITKLDDGTYRCKVVNDYGEDSSYAELFV-KGVRE 97

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 86.2 bits (214), Expect = 1e-20
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK---DRQITSEKNTHTLTLI 171
           +   +      EG       ++       +V WY   + ++     +IT E     L + 
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             +  D G Y  KV N  G   S A L V
Sbjct: 64  DITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIIL 616
             +   +      +E G ++ + K++     + + W+   + L +S K    ++    IL
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +K+     D G Y+    N+ G  +  A + V
Sbjct: 61  YVKDITKL-DDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 327 AEFIKKLDDLEVKERENAVLEVEVT--SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           A    ++     +E  +     ++        V W+   ++++ S+K  I  +  +  L 
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNV 411
           +++I+  D+G Y C       +  + AEL V
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 418 ISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIF 475
           +S  +            +  ++   D    V WY   +++  SE   ++ +     L + 
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63

Query: 476 SAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
                D G Y C+V  D G+  S A L V+  
Sbjct: 64  DITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 15  FSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
            S +      EE   V    ++    +   + WY+    L+ +++   + +  +      
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI---- 59

Query: 74  VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
           + +K I K ++G Y     N  GE      + V
Sbjct: 60  LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 88.2 bits (218), Expect = 5e-20
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 30/209 (14%)

Query: 20  KPVYAEENSEVTLEVRLVAVPEP----DLLWYYNGEPLQETDEVVFS------------- 62
           + +   +     L  +    PE     D+ W  +    Q  D+V+               
Sbjct: 8   QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67

Query: 63  -------DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
                    +D+ S  + + + +++  + G Y    K   G A     + V      KPS
Sbjct: 68  LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL----VKPS 123

Query: 116 ILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDG-KLIKDRQITSEKNTHTLTLIQC 173
                 D S   G    L  +   G    + EW K            +E  +  +++   
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA 183

Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDP 202
           S++  G YS  V N+ G+ +    L+V P
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 84.4 bits (208), Expect = 1e-18
 Identities = 39/241 (16%), Positives = 63/241 (26%), Gaps = 65/241 (26%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQITS--------- 161
           SI  P   +   +GE+A L  +    P  +    +EW       +               
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 162 ------------------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPY 203
                             +    ++ +      D G Y  KV    G       L V   
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL-- 119

Query: 204 EPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGE 262
                                          KPS      D S   G    L  +   G 
Sbjct: 120 ------------------------------VKPSGTRCFVDGSEEIGNDFKLKCEPKEGS 149

Query: 263 PSPKVEWYKDG-KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
              + EW K            +E  +  +++   S++  G YS  V N+ G+ +    L+
Sbjct: 150 LPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209

Query: 322 V 322
           V
Sbjct: 210 V 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 79.7 bits (196), Expect = 5e-17
 Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 40/214 (18%)

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQITS--------- 283
           SI  P   +   +GE+A L  +    P  +    +EW       +               
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 284 ------------------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQG 325
                             +    ++ +      D G Y  KV    G       L V   
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV-LV 120

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
           K    +   D   +   +  L+ E          +W K             E    +  +
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--I 178

Query: 384 LIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
            ++N S    G Y+C     +   +    L+VV 
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 76.3 bits (187), Expect = 6e-16
 Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 39/210 (18%)

Query: 334 DDLEVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKKVTIEKKGTIRK------ 382
             +E  + E A L  + T    D     ++W     + +   +V I   G          
Sbjct: 8   QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67

Query: 383 ------------------LLIRNISVHDEGEYTCSLPD----QETSAELNVVELPPEISV 420
                             + + N+ + D G Y C +            L V+   P  + 
Sbjct: 68  LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTR 126

Query: 421 PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAG 478
              D           + E  +G      +W K              +      + + +A 
Sbjct: 127 CFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS--PVISVKNAS 184

Query: 479 LEDAGEYSCRVG-DTGDKESKATLTVEAPA 507
            E +G YSC V    G  +    L V  P+
Sbjct: 185 SEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 39/264 (14%), Positives = 71/264 (26%), Gaps = 86/264 (32%)

Query: 417 EISVPLQDVKVSRDEKASFEIELT-----KGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
            I+ P Q ++ ++ E A    + T     +G   ++W     +    + V +   G K  
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 472 ------------------------LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAP 506
                                   + + +  L D G Y C+V    G    K  LTV   
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121

Query: 507 AVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE 566
                   PS T                                                
Sbjct: 122 --------PSGTRCF--------------------------------------------V 129

Query: 567 EKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
           + + +     +L  + K  S      W + +           + +  + ++ +K A S  
Sbjct: 130 DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT--PWLAEMTSPVISVKNA-SSE 186

Query: 626 DAGDYKVVATNELGSATHGARVTV 649
            +G Y     N +GS     R+ V
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            P+ ++       E  ++  L+             W    +        +    S     
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS----- 175

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             ++++K+      G Y+   +NR G  +  + + V
Sbjct: 176 -PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 85.3 bits (211), Expect = 2e-19
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 52/216 (24%)

Query: 111 PEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTL 168
           P K  + LEP   +++ + +S  L+ Q    P    ++W+ +G LI         +T   
Sbjct: 2   PPKAVLKLEPP-WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-------THTQPS 53

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
              + +  D G Y+ +      ++    +L V                            
Sbjct: 54  YRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE------------------------- 86

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNT 287
                    +L+  H     EGE+ +L       +P  KV ++++GK  K          
Sbjct: 87  -------WLVLQTPHLE-FQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-----LD 133

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNV 322
            T ++ Q +    G Y            S    + V
Sbjct: 134 PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 24/171 (14%)

Query: 233 PEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTL 290
           P K  + LEP   +++ + +S  L+ Q    P    ++W+ +G LI         +T   
Sbjct: 2   PPKAVLKLEPP-WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-------THTQPS 53

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
              + +  D G Y+ +      ++    +L V       + +   LE +E E  +L    
Sbjct: 54  YRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEW--LVLQTPHLEFQEGETIMLRCHS 109

Query: 351 TSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
             DK    V +F++G+  K S               I   +    G+Y C+
Sbjct: 110 WKDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCT 152

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 28/177 (15%)

Query: 335 DLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
            + V + ++  L  +         ++WF +G  I T            +       + +D
Sbjct: 13  WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNND 62

Query: 393 EGEYTCSLPDQETSAE--LNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKW 448
            GEYTC       S    L V+     +  P  + +    E         K   L  V +
Sbjct: 63  SGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEG--ETIMLRCHSWKDKPLVKVTF 120

Query: 449 YKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKA-TLTV 503
           +++GK   FS               I  A    +G+Y C          SK  T+TV
Sbjct: 121 FQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 77.6 bits (191), Expect = 1e-16
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 31/194 (15%)

Query: 12  PPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMH 68
           PP    K +P  +   +   VTL  +    PE D + W++NG  +               
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------- 50

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                         + G YT           + + V           +L+  H     EG
Sbjct: 51  ---QPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFE------WLVLQTPHLE-FQEG 100

Query: 129 ESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
           E+ +L       +P  KV ++++GK  K           T ++ Q +    G Y      
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-----LDPTFSIPQANHSHSGDYHCTGNI 155

Query: 188 KEGTVESAA-NLNV 200
                 S    + V
Sbjct: 156 GYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 37/239 (15%), Positives = 65/239 (27%), Gaps = 77/239 (32%)

Query: 416 PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
             + +    + V +++  +   +   +     ++W+ +G            I    Q   
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGN----------LIPTHTQPSY 54

Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
            F A   D+GEY+C+ G T   +    LTV             V   PHL          
Sbjct: 55  RFKANNNDSGEYTCQTGQTSLSDP-VHLTVLFE--------WLVLQTPHL---------- 95

Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVW 592
                                                +E  TI L        P   + +
Sbjct: 96  -----------------------------------EFQEGETIMLRCHSWKDKPLVKVTF 120

Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           F+N K    S               + +A + + +GDY           +    VT+ V
Sbjct: 121 FQNGKSQKFSHLDPT--------FSIPQA-NHSHSGDYHCTGNIGYTLFSS-KPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 25/174 (14%), Positives = 42/174 (24%), Gaps = 58/174 (33%)

Query: 567 EKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
              V ++ ++ L  +   SP   SI WF N   + +  +    F             +  
Sbjct: 13  WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-----------NNN 61

Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD 685
           D+G+Y         S      V +                                    
Sbjct: 62  DSGEYTCQTGQTSLSDP----VHLT----------------------------------- 82

Query: 686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP-KAEWTVNGTVIVPS 738
               V    ++   P  E     GE + +        P  K  +  NG     S
Sbjct: 83  ----VLFEWLVLQTPHLEFQE--GETIMLRCHSWKDKPLVKVTFFQNGKSQKFS 130

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 83.1 bits (205), Expect = 2e-19
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTS----------KKVTI 374
           G A  +  L+D++V + E+AV  +++ S      WF +G+E+K++           +  I
Sbjct: 7   GTARLVAGLEDVQVYDGEDAVFSLDL-STIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 375 EKKGTIRKLLIRNISVHDEG-EYTCSLPDQETSAELNVVELPP 416
           E+KG   +L++  +   D G     S P  + SA L + E   
Sbjct: 66  EQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTIQESSG 108

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 76.2 bits (187), Expect = 6e-17
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSE----------NVTLS 464
              +   L+DV+V   E A F ++L+       W+ +G+E+  +E             + 
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLST-IIQGTWFLNGEELKSNEPEGQVEPGALRYRIE 66

Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
             G + +LI+ +   +D+G            +  A LT++  
Sbjct: 67  QKGLQHRLILHAVKHQDSGALVGFS--CPGVQDSAALTIQES 106

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 60.0 bits (145), Expect = 3e-11
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 19/107 (17%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------------QI 159
              ++  L DV + +GE AV S+ +      +  W+ +G+ +K               +I
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLSTI--IQGTWFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV-DPYEP 205
             +   H L L     +D G     V      V+ +A L + +   P
Sbjct: 66  EQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTIQESSGP 109

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 59.2 bits (143), Expect = 5e-11
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------------QI 281
              ++  L DV + +GE AV S+ +      +  W+ +G+ +K               +I
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLSTI--IQGTWFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             +   H L L     +D G     V      V+ +A L +
Sbjct: 66  EQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTI 103

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
           S    G A  +  L+D++V + E+AV  +++ S      WF N   +K
Sbjct: 2   SSGSSGTARLVAGLEDVQVYDGEDAVFSLDL-STIIQGTWFLNGEELK 48

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 84.2 bits (208), Expect = 5e-19
 Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 50/215 (23%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLT 169
           P+KP +        I +GE+  L+            +W+ +G L +       +   +L 
Sbjct: 2   PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-------ETNSSLN 54

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
           ++    +D G Y  +      +      L V                  VV         
Sbjct: 55  IVNAKFEDSGEYKCQHQQVNES--EPVYLEVFSDWLL------LQASAEVV--------- 97

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
                              EG+   L           KV +YKDG+ +K          H
Sbjct: 98  ------------------MEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENH 134

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
            +++   + +D G Y       +   ES   N+ V
Sbjct: 135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 80.7 bits (199), Expect = 9e-18
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 24/178 (13%)

Query: 335 DLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
              + + EN  L     +       KWF +G   + +             L I N    D
Sbjct: 13  WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFED 62

Query: 393 EGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYK 450
            GEY C       S  + +      + +      V   +         +   +  V +YK
Sbjct: 63  SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK 122

Query: 451 DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESK-ATLTVEAP 506
           DG+ + +          +   + I +A +ED+G Y C       D ES+   +TV   
Sbjct: 123 DGEALKYW--------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA 172

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 29/191 (15%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P  S         +   VTL        E     W++NG   +ET+              
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------------- 50

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
           S + I + K  + G Y    +          PV +         +L+      + EG+  
Sbjct: 51  SSLNIVNAKFEDSGEYKCQHQQVNESE----PVYLEV--FSDWLLLQA-SAEVVMEGQPL 103

Query: 132 VLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
            L           KV +YKDG+ +K          H +++   + +D G Y       + 
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQL 158

Query: 191 TVESA-ANLNV 200
             ES   N+ V
Sbjct: 159 DYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 77/238 (32%)

Query: 416 PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
           P++S+     ++ + E  +           +  KW+ +G             +     L 
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS----------EETNSSLN 54

Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
           I +A  ED+GEY C+            + +E  +   L +  +                 
Sbjct: 55  IVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQASA----------------- 94

Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVW 592
                                             + V E   + L      +     +++
Sbjct: 95  ----------------------------------EVVMEGQPLFLRCHGWRNWDVYKVIY 120

Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 649
           +++ + L            EN  + +  A +  D+G Y                 +TV
Sbjct: 121 YKDGEALKYW--------YENHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNITV 169

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 85.1 bits (210), Expect = 2e-18
 Identities = 44/315 (13%), Positives = 85/315 (26%), Gaps = 57/315 (18%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAV---PEPDLLWYYNGEPLQETDEVVFSDQSDM 67
           +P T  +   P   E +++ T+   L  +    E  +      + L  T     +  +D 
Sbjct: 2   LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTYGNDS 57

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
            S  + V++ + +       T          +    V + +     P+    L    ++E
Sbjct: 58  FSAKASVSV-TAEDEGTQRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKPEVSE 112

Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
           G    +  +        +       L    Q         L L      +   +S   T 
Sbjct: 113 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---------LLLKATPEDNGRSFSCSATL 163

Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
           +        N                            L+V  G P       P  + + 
Sbjct: 164 EVAGQLIHKNQTR------------------------ELRVLYG-PRLDERDCP-GNWTW 197

Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
            E        Q  G P P+++  KDG                   +  +   +G Y  + 
Sbjct: 198 PENSQQTPMCQAWGNPLPELKCLKDGTFP----------LPIGESVTVTRDLEGTYLCRA 247

Query: 308 TNKEGTVESAANLNV 322
            + +G V     +NV
Sbjct: 248 RSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 79.7 bits (196), Expect = 1e-16
 Identities = 40/292 (13%), Positives = 81/292 (27%), Gaps = 48/292 (16%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHT 289
              P ++ P     +       +   + G       +V      + +    +T   ++ +
Sbjct: 4   ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFS 59

Query: 290 LTLIQCSTK---DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVL 346
                  T       R +  V     + E+   + +          L   EV E     +
Sbjct: 60  AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-YSFPAPNVILTKPEVSEGTEVTV 118

Query: 347 EVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS------- 399
           + E        K   +G   +          G   +LL++     +   ++CS       
Sbjct: 119 KCEA---HPRAKVTLNGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAG 167

Query: 400 -LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIE-LTKGD--ALVKWYKDGKEI 455
            L  +  + EL V+   P +         +  E +         G+    +K  KDG   
Sbjct: 168 QLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226

Query: 456 AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
                               +   +  G Y CR     G+   + T+ V +P
Sbjct: 227 LPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 42/304 (13%), Positives = 73/304 (24%), Gaps = 86/304 (28%)

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR-NISVHDEGEYTC--SLPDQETSAELNV 411
           A V      Q +  +  VT        K  +            TC   L +Q       V
Sbjct: 36  AQVHLALGDQRLNPT--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 93

Query: 412 -VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
            +   P  +V L   +VS   + + +    +     K   +G        V     G + 
Sbjct: 94  TIYSFPAPNVILTKPEVSEGTEVTVK---CEAHPRAKVTLNG--------VPAQPLGPRA 142

Query: 471 KLIIFSAGLEDAGEYSCRV-----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
           +L++ +   ++   +SC       G    K     L V           P +      G+
Sbjct: 143 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG--------PRLDERDCPGN 194

Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
            T                                            E      M +   +
Sbjct: 195 WT------------------------------------------WPENSQQTPMCQAWGN 212

Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
           P P +   ++    L   +   +              +    G Y   A +  G  T   
Sbjct: 213 PLPELKCLKDGTFPLPIGESVTV--------------TRDLEGTYLCRARSTQGEVTREV 258

Query: 646 RVTV 649
            V V
Sbjct: 259 TVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 71.6 bits (175), Expect = 6e-14
 Identities = 36/317 (11%), Positives = 76/317 (23%), Gaps = 74/317 (23%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHT 167
              P ++ P     +       +   + G       +V      + +    +T   ++ +
Sbjct: 4   ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFS 59

Query: 168 LTLIQCSTK---DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
                  T       R +  V     + E+   + +  +           P P V+    
Sbjct: 60  AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF-----------PAPNVI---- 104

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE 284
                            L    ++EG    +  +        +       L    Q    
Sbjct: 105 -----------------LTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---- 143

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN----LNVDQG-KAEFIKKLDDLEVK 339
                L L      +   +S   T +        N    L V  G + +      +    
Sbjct: 144 -----LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWP 198

Query: 340 ERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
           E        +   +   ++K  KDG                +       ++   EG Y C
Sbjct: 199 ENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPIGESVTVTRDLEGTYLC 245

Query: 399 ----SLPDQETSAELNV 411
               +  +      +NV
Sbjct: 246 RARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 19/98 (19%)

Query: 12  PPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
            P   ++  P      ENS+ T   +    P P+L    +G       E           
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 231

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
                   ++ +  EG Y   A++ +GE   ++ V V 
Sbjct: 232 ------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 39/329 (11%), Positives = 78/329 (23%), Gaps = 110/329 (33%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
           PP++  P + ++V         ++      +A V      + +  +  VT   D    K 
Sbjct: 6   PPQLVSP-RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGNDSFSAKA 62

Query: 473 II-FSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
            +  +A  E     +C V      +E+  T+T+ +                         
Sbjct: 63  SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF------------------------ 98

Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
                                       P       +  V E   + +  K +A P   +
Sbjct: 99  ----------------------------PAPNVILTKPEVSEGTEVTV--KCEAHPRAKV 128

Query: 591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
                    L    +  +           +A  E +   +   AT E+         T +
Sbjct: 129 TLNGVPAQPLGPRAQLLL-----------KATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177

Query: 651 VEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPE-VLVKKG 709
           +                                      V   P +D    P      + 
Sbjct: 178 LR-------------------------------------VLYGPRLDERDCPGNWTWPEN 200

Query: 710 EDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
                  +    P P+ +   +GT  +P 
Sbjct: 201 SQQTPMCQAWGNPLPELKCLKDGTFPLPI 229

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 82.6 bits (204), Expect = 5e-18
 Identities = 31/157 (19%), Positives = 48/157 (30%), Gaps = 27/157 (17%)

Query: 85  GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK 144
             Y   +                      P +  P   V   EG    ++ +V   PS  
Sbjct: 1   ATYAAASSALVPRGSHMYA----------PKLQGP-VAVYTWEGNQVNITCEVFAYPSAT 49

Query: 145 VEWYKDGKLIKDR-----QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 199
           + W++DG+L+        +I +  +   L +   S  D G Y+    N+ G       L 
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109

Query: 200 VDPYEPKESKETPPSPPPYVVSEL--DTLQVNTGKPE 234
                        PS P     E    T QV   +PE
Sbjct: 110 Q---------ADTPSSPSIDQVEPYSSTAQVQFDEPE 137

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTHTL 290
           P +  P   V   EG    ++ +V   PS  + W++DG+L+        +I +  +   L
Sbjct: 20  PKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYL 78

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA--VLEV 348
            +   S  D G Y+    N+ G                       L   +  ++  + +V
Sbjct: 79  EVTPDSENDFGNYNCTAVNRIGQESLEFI----------------LVQADTPSSPSIDQV 122

Query: 349 EVTSDKADVKW 359
           E  S  A V++
Sbjct: 123 EPYSSTAQVQF 133

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 26/204 (12%)

Query: 1   ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
            + +        P        VY  E ++V +   + A P   + W+ +G+ L  ++   
Sbjct: 8   SALVPRGSHMYAPKLQGPVA-VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 66

Query: 61  FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
               +      S + +    + + G Y   A NR G+  ++  +      P  PSI +  
Sbjct: 67  IKIYNT--PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ-ADTPSSPSIDQ-- 121

Query: 121 HDVSITEGESAVLSVQVGGE--PSP----KVEWYKDGKLIKDR-----QITSEKNTHTLT 169
             V      +A +           P    K EW   G+ +        +  S +   T+ 
Sbjct: 122 --VEPY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIV 178

Query: 170 LIQCSTKDKGRYSVKVT--NKEGT 191
            ++  T     Y+V++   N +G 
Sbjct: 179 GLKPET----TYAVRLAALNGKGL 198

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENI- 614
                ++        E   + +  +V A P+ +I WFR+ + L SS     +I++  +  
Sbjct: 17  MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76

Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVH 670
            LE+       D G+Y   A N +G  +    +    +    P I+ ++   +   
Sbjct: 77  YLEVTPDSEN-DFGNYNCTAVNRIGQESLEFILVQ-ADTPSSPSIDQVEPYSSTAQ 130

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 18/193 (9%)

Query: 312 GTVESAANLNVDQGKAEF---IKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIK 367
            T  +A++  V +G   +   ++    +   E     +  EV +   A + WF+DGQ + 
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP 60

Query: 368 TSK--KVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP 421
           +S    + I    +   L +   S +D G Y C     +  +     L   + P   S+ 
Sbjct: 61  SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 120

Query: 422 LQDVKVSRDEKASFEIELTKGDA-----LVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
             +   S   +  F+     G         +W   G+E+  S+         +  + I  
Sbjct: 121 QVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTI-- 177

Query: 477 AGLEDAGEYSCRV 489
            GL+    Y+ R+
Sbjct: 178 VGLKPETTYAVRL 190

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 2/77 (2%)

Query: 681 STEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
           S+ +        AP +  P    V   +G  + I     A P     W  +G ++  S  
Sbjct: 7   SSALVPRGSHMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY 64

Query: 741 VKGKAEFIKKLDDLEVK 757
              K         LEV 
Sbjct: 65  SNIKIYNTPSASYLEVT 81

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 81.6 bits (201), Expect = 6e-18
 Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 34/198 (17%)

Query: 19  TKPVY---AEENSEVTLEVRLVAVPEPDL--LWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
              V+    +  S++ L   L           W   G  L+E                  
Sbjct: 2   AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----------QK 50

Query: 74  VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVL 133
              K     + G Y+ V    E     +I +         P +        I EGE+A+L
Sbjct: 51  TEFKVDSDDQWGEYSCVFLP-EPMGTANIQLHG------PPRVKAVKSSEHINEGETAML 103

Query: 134 SVQVGGEPSP-KVEWYKDGKLIKDR---------QITSEKNTHTLTLIQCSTK-DKGRYS 182
             +    P      WYK                  ++S +    L +   + + D G+Y 
Sbjct: 104 VCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163

Query: 183 VKVTNKEGTVESAANLNV 200
              T+ +G+ ++   L V
Sbjct: 164 CNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 52/217 (23%)

Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
            +       G   +L+  +    +      W K G ++K+                 S  
Sbjct: 4   TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE----DALPGQKTEFKVDSDD 59

Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
             G YS     +       AN+ +                                   P
Sbjct: 60  QWGEYSCVFLPEPMGT---ANIQLHG--------------------------------PP 84

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDR---------QITSEKN 286
            +        I EGE+A+L  +    P      WYK                  ++S + 
Sbjct: 85  RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144

Query: 287 THTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
              L +   + + D G+Y    T+ +G+ ++   L V
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 80.1 bits (197), Expect = 2e-17
 Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 23/186 (12%)

Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
            +       G   +L+  +    +      W K G ++K+                 S  
Sbjct: 4   TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE----DALPGQKTEFKVDSDD 59

Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD--KAD 356
             G YS     +       AN+ +  G            + E E A+L  +  S     D
Sbjct: 60  QWGEYSCVFLPEPMGT---ANIQL-HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTD 115

Query: 357 VKWFKDGQEI------KTSKKVTIEKKGTIRKLLIRNISV-HDEGEYTC----SLPDQET 405
             W+K            +  +  +       +L I N+++  D G+Y C    S    + 
Sbjct: 116 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175

Query: 406 SAELNV 411
              L V
Sbjct: 176 IITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 73.5 bits (180), Expect = 3e-15
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 24/177 (13%)

Query: 342 ENAVLEVEVTSD---KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
              +L   +          +W K G  +K             +K   +  S    GEY+C
Sbjct: 14  SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDDQWGEYSC 66

Query: 399 S-LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD---ALVKWYKDGKE 454
             LP+   +A + +   PP +        ++  E A    + ++         WYK    
Sbjct: 67  VFLPEPMGTANIQLHG-PPRVKAVKSSEHINEGETAMLVCK-SESVPPVTDWAWYKITDS 124

Query: 455 IAFSENVTLSI------DGKKQKLIIFSAGLE-DAGEYSCRVG-DTGDKESKATLTV 503
              +                + +L I +  +E D G+Y C      G  ++  TL V
Sbjct: 125 EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 29/211 (13%), Positives = 49/211 (23%), Gaps = 68/211 (32%)

Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
            +W K G  +              QK        +  GEYSC      +    A + +  
Sbjct: 32  HRWLKGGVVLKEDALPG-------QKTEFKVDSDDQWGEYSCVF--LPEPMGTANIQLHG 82

Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
           P                                                    P      
Sbjct: 83  P----------------------------------------------------PRVKAVK 90

Query: 566 EEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLL------SSPKKREIFDGENIILEL 618
             + + E  T  L+ K ++ P      W++            S  +           L +
Sbjct: 91  SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHI 150

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
           +  + E D G Y+   T+  GS      + V
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           PP         +  E     L  +  +VP   D  WY   +   +        +  + S 
Sbjct: 83  PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142

Query: 71  --VSIVTIKSIKKRE-EGVYTVVAKNREGEAKMDIPVKV 106
              S + I+++      G Y     + +G  +  I ++V
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 18/97 (18%)

Query: 569 TVKEKG-TIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
           TV++ G  I L   +  S        W +    L                 E K  DS+ 
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFK-VDSDD 59

Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSI 662
             G+Y  V   E           + +   G P + ++
Sbjct: 60  QWGEYSCVFLPE-----PMGTANIQLH--GPPRVKAV 89

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
           E+  ++      ++  G +  L+ +V  +PSP++ W KDG  +          +  L L 
Sbjct: 9   EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------PLPPSPVLILP 62

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
           +   +D+G YS   T+     + +  +++   EP
Sbjct: 63  EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
           E+  ++      ++  G +  L+ +V  +PSP++ W KDG  +          +  L L 
Sbjct: 9   EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------PLPPSPVLILP 62

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           +   +D+G YS   T+     + +  +++
Sbjct: 63  EIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
            S  +    +   E   V   GT+ L  +V A P+P I W ++  PL   P         
Sbjct: 5   SSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP--------- 55

Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           + +L L E     D G Y  VAT+          V++ +
Sbjct: 56  SPVLILPEI-GPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
           + + + +   V       L  EV +     + W KDG  +       +        L++ 
Sbjct: 12  QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------PLPPSPV---LILP 62

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPP 416
            I   D+G Y+C    S    + S  +++  + P
Sbjct: 63  EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGK 468
                 ++ V  +   V+     +   E         + W KDG  +    +  L +   
Sbjct: 6   SGLEEVQLVVEPEGGAVAPGGTVTLTCE-VPAQPSPQIHWMKDGVPLPLPPSPVLILP-- 62

Query: 469 KQKLIIFSAGLEDAGEYSCRV--GDTGDKESK-ATLTVEAP 506
                    G +D G YSC       G +ES+  ++++  P
Sbjct: 63  -------EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                 + +         VTL   + A P P + W  +G PL      V           
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL---------- 59

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
               +  I  +++G Y+ VA +     +    V ++  +P
Sbjct: 60  ---ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 81.9 bits (201), Expect = 7e-18
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 17/194 (8%)

Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
           E  S +L+       +  + W+KDGK+I        ++     L   +   +G Y  K +
Sbjct: 17  EDGSVLLT---CDAEAKNITWFKDGKMIG----FLTEDKKKWNLGSNAKDPRGMYQCKGS 69

Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
             +              + K+              +      + G  E   I +  + VS
Sbjct: 70  QNKSKPLQVYYRMGSADDAKKDAAKKDDAK----KDDAKKDGSDGNEEMGGITQTPYKVS 125

Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCS-TKDKGRY 303
           I  G + +L+      P  ++ W  + K I   +       +   L+L + S  +  G Y
Sbjct: 126 I-SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYY 182

Query: 304 SVKVTNKEGTVESA 317
                  +    + 
Sbjct: 183 VCYPRGSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 69.9 bits (170), Expect = 9e-14
 Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 34/198 (17%)

Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
           + W+KDGK I F           K+K  + S   +  G Y C+      K  +    + +
Sbjct: 32  ITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGS 84

Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
            A +                                           GS G   +     
Sbjct: 85  -ADDAKKDAAKKDDAKK------------------------DDAKKDGSDGNEEMGGITQ 119

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
               V   GT  ++      P   I+W  N+K +      + I   E+ +   + ++ E 
Sbjct: 120 TPYKVSISGT-TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE- 177

Query: 626 DAGDYKVVATNELGSATH 643
            +G Y            +
Sbjct: 178 QSGYYVCYPRGSKPEDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 63.4 bits (153), Expect = 2e-11
 Identities = 27/213 (12%), Positives = 63/213 (29%), Gaps = 40/213 (18%)

Query: 322 VDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIR 381
           +   K   + K+ D +  E  + +L  +   +  ++ WFKDG+ I    +         +
Sbjct: 1   MQSIKGNHLVKVYDYQ--EDGSVLLTCDA--EAKNITWFKDGKMIGFLTEDK-------K 49

Query: 382 KLLIRNISVHDEGEYTC---------------SLPDQETSAELNVVELPPEISVPLQDVK 426
           K  + + +    G Y C                    +   +    +   +         
Sbjct: 50  KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSD 109

Query: 427 VSRDEKASFEIELT---KGDAL-----------VKWYKDGKEIAFSENVTLSIDGKKQKL 472
            + +     +        G  +           + W  + K I   E+       +    
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 169

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
           +   + LE +G Y C    +  +++   L + A
Sbjct: 170 LKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 63.0 bits (152), Expect = 2e-11
 Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 44/199 (22%)

Query: 24  AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
            +E+  V L          ++ W+ +G+ +                      + S  K  
Sbjct: 15  YQEDGSVLLTC---DAEAKNITWFKDGKMIGFLT-----------EDKKKWNLGSNAKDP 60

Query: 84  EGVYTVVAKNREGEA------------------------KMDIPVKVNTGKPEKPSILEP 119
            G+Y       + +                         K D     + G  E   I + 
Sbjct: 61  RGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120

Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCS-TK 176
            + VSI  G + +L+      P  ++ W  + K I   +       +   L+L + S  +
Sbjct: 121 PYKVSI-SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE 177

Query: 177 DKGRYSVKVTNKEGTVESA 195
             G Y       +    + 
Sbjct: 178 QSGYYVCYPRGSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 18/178 (10%), Positives = 44/178 (24%), Gaps = 25/178 (14%)

Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
           + A +I WF++ K +    + ++ ++  +   +          G Y+   +         
Sbjct: 27  AEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD--------PRGMYQCKGSQNKSKPLQV 78

Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
                  +   +                       +  +   +       +      P  
Sbjct: 79  YYRMGSADDAKKDAAKK---------------DDAKKDDAKKDGSDGNEEMGGITQTPYK 123

Query: 705 LVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENA 762
           +   G  + +       P  +  W  N   I   +  K        L   E  E E +
Sbjct: 124 VSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQS 179

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 82.1 bits (202), Expect = 8e-18
 Identities = 29/210 (13%), Positives = 72/210 (34%), Gaps = 26/210 (12%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY---NGEPLQETDEVVFSDQSDMH 68
             +       +   +N  V +     ++   ++           + + + + +  +    
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCL-GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF- 66

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                 TI S      G+    AK  +   +  + + V  G      +L P H + ++ G
Sbjct: 67  ------TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 120

Query: 129 ESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSE-----------KNTHTLTLIQCST 175
           E  VL+     E +  ++  W       + +++ +            K   TLT+   + 
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180

Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
            D+G Y+   ++   T +++  + V  +E 
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRV--HED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 45/227 (19%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK---DGKLIKDRQITSEKNTHTL 168
              S    +  ++  + ++ V+        +  V       + + + D    S  +    
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
           T+        G    +    + + +S   + V                 Y V        
Sbjct: 67  TIPSYMISYAGMVFCEAKINDESYQSIMYIVV-----------VVGYRIYDV-------- 107

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSE-- 284
                    +L P H + ++ GE  VL+     E +  ++  W       + +++ +   
Sbjct: 108 ---------VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 158

Query: 285 ---------KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                    K   TLT+   +  D+G Y+   ++   T +++  + V
Sbjct: 159 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 61.7 bits (149), Expect = 8e-11
 Identities = 23/194 (11%), Positives = 55/194 (28%), Gaps = 25/194 (12%)

Query: 335 DLEVKERENAVLEVEVTSDKADVKW---FKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
            +   + +  V+    +    +V     + + + +    +++ + K   +   I +  + 
Sbjct: 18  YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK---KGFTIPSYMIS 74

Query: 392 DEGEYTC----SLPDQETSAELNVVELPPEISV---PLQDVKVSRDEKASFEIELT---K 441
             G   C    +    ++   + VV       V   P   +++S  EK            
Sbjct: 75  YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134

Query: 442 GDALVKWYKDGKEIAFSENVTLSIDGKKQK--------LIIFSAGLEDAGEYSCRVGDT- 492
                 W     +    + V   +  +           L I      D G Y+C      
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194

Query: 493 GDKESKATLTVEAP 506
             K++   + V   
Sbjct: 195 MTKKNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 29/244 (11%), Positives = 62/244 (25%), Gaps = 56/244 (22%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
                  +  +  ++++        +  +  V       E  F  +        K+   I
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 68

Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
            S  +  AG   C    +    +S   + V         ++  V L P            
Sbjct: 69  PSYMISYAGMVFCEAKINDESYQSIMYIVVVVG-----YRIYDVVLSP------------ 111

Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWF 593
           S  I++                             +V EK  +   A+ + +      W 
Sbjct: 112 SHGIEL-----------------------------SVGEKLVLNCTARTELNVGIDFNWE 142

Query: 594 RNNKPLLSSPKKREIFDGENI--------ILELKEADSETDAGDYKVVATNELGSATHGA 645
             +               ++          L +    + +D G Y   A++ L +  +  
Sbjct: 143 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRSDQGLYTCAASSGLMTKKNST 201

Query: 646 RVTV 649
            V V
Sbjct: 202 FVRV 205

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 80.7 bits (199), Expect = 8e-18
 Identities = 37/219 (16%), Positives = 64/219 (29%), Gaps = 52/219 (23%)

Query: 108 TGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNT 165
           T    K  + LEP    S+ E +S  L  Q    P     +W+ +  LI           
Sbjct: 2   TEDLPKAVVFLEP-QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-------SSQA 53

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
            +  +   +  D G Y  +                                   +S+   
Sbjct: 54  SSYFIDAATVNDSGEYRCQTNL------------------------------STLSDPVQ 83

Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSE 284
           L+V+ G      +L+    V   E +   L           KV + ++GK  K       
Sbjct: 84  LEVHIG----WLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH---- 134

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
            +     + + + KD G Y  +       V S   N+ +
Sbjct: 135 -HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 78.0 bits (192), Expect = 7e-17
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 26/172 (15%)

Query: 338 VKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGE 395
           V E+++  L+ +      D   +WF +   I +                I   +V+D GE
Sbjct: 19  VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSGE 68

Query: 396 YTCSLPDQETS--AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKD 451
           Y C       S   +L V      +  P    K    +         K  AL  V + ++
Sbjct: 69  YRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEE--DPIHLRCHSWKNTALHKVTYLQN 126

Query: 452 GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
           GK+  +                I  A L+D+G Y CR        S  T+ +
Sbjct: 127 GKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 29/174 (16%)

Query: 30  VTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88
           VTL+ +    PE +   W++N   +                  S   I +    + G Y 
Sbjct: 25  VTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYR 70

Query: 89  VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEW 147
                         PV++         +L+    V   E +   L           KV +
Sbjct: 71  CQTNLSTLSD----PVQLEVHIG--WLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTY 123

Query: 148 YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 200
            ++GK  K        +     + + + KD G Y  +       V S   N+ +
Sbjct: 124 LQNGKDRKYFH-----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 28/245 (11%), Positives = 61/245 (24%), Gaps = 78/245 (31%)

Query: 411 VVELP-PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDG 467
             +LP   + +  Q   V   +  +   +   +  D   +W+ +   I+           
Sbjct: 2   TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS----------S 51

Query: 468 KKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
           +     I +A + D+GEY C+   +   +    L V             +   P      
Sbjct: 52  QASSYFIDAATVNDSGEYRCQTNLSTLSDP-VQLEVHIG--------WLLLQAPR----- 97

Query: 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P 586
                                                      KE+  I L      +  
Sbjct: 98  ----------------------------------------WVFKEEDPIHLRCHSWKNTA 117

Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646
              + + +N K         +          + +A +  D+G Y         + +    
Sbjct: 118 LHKVTYLQNGKDRKYFHHNSD--------FHIPKA-TLKDSGSYFCRGLVGSKNVS-SET 167

Query: 647 VTVDV 651
           V + +
Sbjct: 168 VNITI 172

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 553 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           GS G    P+  +    +TV   GT  L      SP P+I+W ++   + +   + +   
Sbjct: 1   GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL- 59

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
            EN +L+++ A    D G Y  +A+   G AT  A + V  
Sbjct: 60  -ENGVLQIRYA-KLGDTGRYTCIASTPSGEATWSAYIEVQE 98

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNT 165
           +G    P I +   + ++    + VLS    G P P + W KDG L+   D +I   +N 
Sbjct: 3   SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN- 61

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSP 215
             L +      D GRY+   +   G    +A + V  +        P  P
Sbjct: 62  GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDP 111

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNT 287
           +G    P I +   + ++    + VLS    G P P + W KDG L+   D +I   +N 
Sbjct: 3   SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN- 61

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             L +      D GRY+   +   G    +A + V
Sbjct: 62  GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP   +         +    L       P P +LW  +G  +   D  +   ++ +    
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---- 63

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
             + I+  K  + G YT +A    GEA     ++V   +   P       D ++   
Sbjct: 64  --LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ--EFGVPVQPPRPTDPNLIPS 116

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLI 385
              +   +  V      VL    T      + W KDG  + T   ++   + G    L I
Sbjct: 10  VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---LQI 66

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVS 428
           R   + D G YTC       +   SA + V E       P +    +
Sbjct: 67  RYAKLGDTGRYTCIASTPSGEATWSAYIEVQE-FGVPVQPPRPTDPN 112

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN-VTLSIDGKKQK 471
           PP I     +  V+ D           G     + W KDG  ++  ++ +    +G    
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCV-ATGSPVPTILWRKDGVLVSTQDSRIKQLENGV--- 63

Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPS-VTLVP 521
           L I  A L D G Y+C     +G+    A + V+   V      P+   L+P
Sbjct: 64  LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIP 115

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
           K  I        +  G + VL     G P P  +W+K+   +      + +      +  
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPY 56

Query: 173 CSTKDKGRYSVKVTNKEGTVES-AANLNVDP 202
              + +G Y   V N   + +S    + +D 
Sbjct: 57  VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 75.5 bits (186), Expect = 6e-17
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
           K  I        +  G + VL     G P P  +W+K+   +      + +      +  
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPY 56

Query: 295 CSTKDKGRYSVKVTNKEGTVES-AANLNVD 323
              + +G Y   V N   + +S    + +D
Sbjct: 57  VDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           G           + +    T+ L      SP P   WF+N  PL    KK         +
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------L 51

Query: 616 LELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 651
             +   D E   G Y     N+  S  +    + +D 
Sbjct: 52  YMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 13/89 (14%)

Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
          G       +         S + L+   V  P P   W+ N  PL    +           
Sbjct: 1  GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----------- 49

Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
             +  +  +    +G Y     N     
Sbjct: 50 --KLYMVPYVDLEHQGTYWCHVYNDRDSQ 76

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 13/99 (13%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
             +I V     K+        +     G  +   +W+K+   +         +       
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHETKKLYMVP------ 55

Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEF 510
                 LE  G Y C V  D   ++SK    +       
Sbjct: 56  ---YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 14/96 (14%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
           +   +    ++      VL+           +WFK+   +    K         +  ++ 
Sbjct: 5   QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVP 55

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEI 418
            + +  +G Y C        Q++     +++    +
Sbjct: 56  YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 80.5 bits (198), Expect = 2e-17
 Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 29/182 (15%)

Query: 245 VSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKD--------------------RQI 281
           V+   GE   L+    +V   P  +V W+K G   +                       I
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKER 341
               NT  L +   +    G Y  ++   E  V    +L+V           +  +  + 
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV-VKPLTLSVHSERSQFPDF 119

Query: 342 ENAVLEVEVTSD-KADVKW-FKDG---QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY 396
               +   V +     V+W   +G        +  V  EK G++   +  ++        
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179

Query: 397 TC 398
           TC
Sbjct: 180 TC 181

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 27/224 (12%), Positives = 51/224 (22%), Gaps = 62/224 (27%)

Query: 123 VSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKD--------------------RQI 159
           V+   GE   L+    +V   P  +V W+K G   +                       I
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYV 219
               NT  L +   +    G Y  ++   E  V    +L+V                   
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK----------------- 103

Query: 220 VSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGKLIKD 278
                            ++          +     ++  V   P P V+W   +G     
Sbjct: 104 ---------------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP 148

Query: 279 R------QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
                      + +      +          +    N +     
Sbjct: 149 TAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 70.1 bits (171), Expect = 7e-14
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 27/196 (13%)

Query: 22  VYAEENSEVTLEVRLVAV---PEPDLLWYYNGEPLQET-----------DEVVFSDQSDM 67
           V A     VTL      V   PE ++ W+  G   ++             E  F    D+
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 68  H--SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSI 125
           H  +    + + +     +G Y    K  E E      + V     +  ++         
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV----KPLTLSVHSERSQF 116

Query: 126 TEGESAVLSVQVGGEPSPKVEW-YKDGKLIKDR------QITSEKNTHTLTLIQCSTKDK 178
            +     ++  V   P P V+W   +G                + +      +       
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176

Query: 179 GRYSVKVTNKEGTVES 194
              +    N +     
Sbjct: 177 LPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 29/230 (12%), Positives = 52/230 (22%), Gaps = 76/230 (33%)

Query: 446 VKWYKDGKEIA-----------------FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
           V W+K G                     F     +        L++ +A +   G Y CR
Sbjct: 26  VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR 85

Query: 489 V-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIV 547
           +     +   +  L+V  P                                         
Sbjct: 86  MKLGETEVTKQEHLSVVKP----------------------------------------- 104

Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN----KPLLSSP 603
                             E     +   + +   V A P P + W         P  ++ 
Sbjct: 105 -----------LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANG 153

Query: 604 KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
              +  DG   +        +        V  N+   A HG  V+  + +
Sbjct: 154 GVMKEKDGSLSVAVDLSL-PKPWHLPVTCVGKNDKEEA-HGVYVSGYLSQ 201

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 64.7 bits (157), Expect = 5e-12
 Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 33/177 (18%)

Query: 342 ENAVLEVEVT----SDKADVKWFKDGQEIKTSKKVTIE-----------------KKGTI 380
           E   L           + +V WFK G   +      +                  +    
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 381 RKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFE 436
             L++   ++  +G Y C       +      L+VV+ P  +SV  +  +       +  
Sbjct: 67  FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVT 125

Query: 437 IELTKGD--ALVKW-YKDGKEIA---FSENVTLSIDGKKQKLIIFSAGLEDAGEYSC 487
                      V+W   +G E A    +  V    DG     +  S         +C
Sbjct: 126 CT-VNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPLQETDEVVFSDQSDMHS 69
           P T S  ++     + S +T+   + A P P + W      EP           + D   
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKD--G 161

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
            +S+    S+ K      T V KN + EA 
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 21/176 (11%), Positives = 36/176 (20%), Gaps = 61/176 (34%)

Query: 581 KVKASPAPSIVWFRNNKP-------------LLSSPKKREIF----DGENIILELKEADS 623
           +V   P   + WF+                 +      R  F          L +  A +
Sbjct: 17  RVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA-N 75

Query: 624 ETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTE 683
            +  G+Y           T    ++V       P   S+                     
Sbjct: 76  ISHDGNYLCRMKLGETEVTKQEHLSVVK-----PLTLSV--------------------- 109

Query: 684 VDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTV-NGTVIVPS 738
                                       L +     A P P  +W +  G    P+
Sbjct: 110 ----------------HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT 149

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 80.0 bits (197), Expect = 2e-17
 Identities = 29/197 (14%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 22  VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF-------------SDQSDMH 68
           V  ++   V L             W  + +     ++  F             S +S   
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                + IK++K  +   Y    ++++ E ++                L    D  + +G
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL------------LVFGLTANSDTHLLQG 112

Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
           +S  L+++     SP V+              + +   TL++ Q   +D G ++  V   
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 165

Query: 189 EGTVESAANLNVDPYEP 205
           +  VE   ++ V  ++ 
Sbjct: 166 QKKVEFKIDIVVLAFQK 182

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 75.4 bits (185), Expect = 8e-16
 Identities = 24/197 (12%), Positives = 57/197 (28%), Gaps = 44/197 (22%)

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 284
           V   +G++  L+     + S +  W    ++                       R+   +
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
           +    L +     +D   Y  +V +++  V         Q     +    D  + + ++ 
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEV---------QLLVFGLTANSDTHLLQGQSL 115

Query: 345 VLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----S 399
            L +E        V+      +     K           L +  + + D G +TC    +
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQN 165

Query: 400 LPDQETSAELNVVELPP 416
               E   ++ V+    
Sbjct: 166 QKKVEFKIDIVVLAFQK 182

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 28/220 (12%), Positives = 64/220 (29%), Gaps = 67/220 (30%)

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 162
           V   +G++  L+     + S +  W    ++                       R+   +
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
           +    L +     +D   Y  +V +++  V+                             
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ----------------------------- 95

Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
           L    +               D  + +G+S  L+++     SP V+              
Sbjct: 96  LLVFGL----TANS-------DTHLLQGQSLTLTLESPPGSSPSVQCRSPRG-------K 137

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           + +   TL++ Q   +D G ++  V   +  VE   ++ V
Sbjct: 138 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 58.1 bits (140), Expect = 7e-10
 Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 35/188 (18%)

Query: 338 VKERENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIR--------------- 381
            K+ +   L    +  K+    W    Q      + +   KG  +               
Sbjct: 7   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66

Query: 382 --KLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
              L+I+N+ + D   Y C + DQ+   +L V  L         D  + + +  +  +E 
Sbjct: 67  NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN-----SDTHLLQGQSLTLTLES 121

Query: 440 TKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKES 497
             G +  V+      +                 L +    L+D+G ++C V  +    E 
Sbjct: 122 PPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQNQKKVEF 171

Query: 498 KATLTVEA 505
           K  + V A
Sbjct: 172 KIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 11/81 (13%)

Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
            + +  ++ L  +     +PS+         +               L + +     D+G
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQL-ELQDSG 156

Query: 629 DYKVVATNELGSATHGARVTV 649
            +                + V
Sbjct: 157 TWTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 7/86 (8%), Positives = 26/86 (30%), Gaps = 14/86 (16%)

Query: 21  PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK 80
             +  +   +TL +       P +          +  +               +++  ++
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT--------------LSVSQLE 151

Query: 81  KREEGVYTVVAKNREGEAKMDIPVKV 106
            ++ G +T      + + +  I + V
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIVV 177

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 79.8 bits (196), Expect = 3e-17
 Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 21/200 (10%)

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
             P        G+S  L+    G  SP   W        + ++T+E  T TLT+   S  
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT----SDK 354
           ++  Y    T +   +E    + +     +  +      ++  +   ++  V      D+
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEI-YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123

Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIR----KLLIRNISVHDEGEYTC-----------S 399
            ++   K    +K+ + +    + ++     ++    +         C            
Sbjct: 124 LEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183

Query: 400 LPDQETSAELNVVELPPEIS 419
              ++   EL V    P+ +
Sbjct: 184 PTVRQAVKELQVYI-SPKNT 202

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 42/210 (20%)

Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
             P        G+S  L+    G  SP   W        + ++T+E  T TLT+   S  
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
           ++  Y    T +   +E    + +  Y   +  E   S P                    
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEI--YSFPKDPEIHLSGP-------------------- 102

Query: 237 SILEPLHDVSITEGESAVLSVQV-GGEPSPK--VEWYKDGKLIKDRQI-------TSEKN 286
                     +  G+   +   V    P  +  ++  K   L+K ++        + E  
Sbjct: 103 ----------LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETK 152

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
           +  +T              +       ++S
Sbjct: 153 SLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 182

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 59.0 bits (142), Expect = 5e-10
 Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 23/185 (12%)

Query: 21  PVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-PLQETDEVVFSDQSDMHSYVSIVTIKSI 79
              A+    V+L         P   W    + PL        +         S +T+  +
Sbjct: 10  RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT--------STLTMNPV 61

Query: 80  KKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-G 138
               E  Y   A     + +  I V++       P   E      +  G+   +   V  
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEI----YSFPKDPEIHLSGPLEAGKPITVKCSVAD 117

Query: 139 GEPSPK--VEWYKDGKLIKDRQI-------TSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
             P  +  ++  K   L+K ++        + E  +  +T              +     
Sbjct: 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 177

Query: 190 GTVES 194
             ++S
Sbjct: 178 DEMDS 182

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 52.5 bits (125), Expect = 8e-08
 Identities = 24/194 (12%), Positives = 54/194 (27%), Gaps = 25/194 (12%)

Query: 334 DDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
                +  ++  L    T        W      I +     +  +GT   L +  +S  +
Sbjct: 9   SRYLAQIGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGN 65

Query: 393 EGEYTCSL----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT----KGDA 444
           E  Y C+        E   ++ +   P +  +      +   +  + +  +         
Sbjct: 66  EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIH-LSGPLEAGKPITVKCSVADVYPFDRL 124

Query: 445 LVKWYKDGKEIAFSENVTLSIDGK---KQKLIIFSAGLEDAG-EYSCRV--------GDT 492
            +   K    +   E +  +       K   + F+  +ED G    CR            
Sbjct: 125 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184

Query: 493 GDKESKATLTVEAP 506
             +++   L V   
Sbjct: 185 TVRQAVKELQVYIS 198

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 25/178 (14%), Positives = 47/178 (26%), Gaps = 27/178 (15%)

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
                +   ++ L        +P   W       L+    +   +G    L +    S  
Sbjct: 9   SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNPV-SFG 64

Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD 685
           +   Y   AT E      G +V                     ++          S  ++
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVE--------------------IYSFPKDPEIHLSGPLE 104

Query: 686 VEKPVE---TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
             KP+    +   + P    E+ + KG+ L     F      K+  T +  V      
Sbjct: 105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 162

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 75.9 bits (187), Expect = 6e-17
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNT 165
           +G    P IL+   + ++    +A+L  +  G+P P + W K+G     +D + T ++  
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ- 61

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            TL +      D G Y+   T+  G    +A L+V
Sbjct: 62  GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 75.9 bits (187), Expect = 6e-17
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNT 287
           +G    P IL+   + ++    +A+L  +  G+P P + W K+G     +D + T ++  
Sbjct: 3   SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ- 61

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            TL +      D G Y+   T+  G    +A L+V
Sbjct: 62  GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 553 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
           GS G    P+ ++    +T+   GT  L  K    P P I W +          +  I  
Sbjct: 1   GSSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ- 59

Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            E   L++K     +D G Y  VAT+  G  +  A + V
Sbjct: 60  -EQGTLQIKNL-RISDTGTYTCVATSSSGETSWSAVLDV 96

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT-SKKVTIEKKGTIRKLLI 385
             ++   +  +     A+L+ + T D    + W K+G        + TI+++GT   L I
Sbjct: 10  IILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT---LQI 66

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVE 413
           +N+ + D G YTC    S  +   SA L+V E
Sbjct: 67  KNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP   +         +    L+ +    P P + W   G      D      +       
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT---- 63

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             + IK+++  + G YT VA +  GE      + V
Sbjct: 64  --LQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN-VTLSIDGKKQK 471
           PP I     +  ++ D  A  + +   GD   ++ W K+G      +   T+   G    
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCK-ATGDPLPVISWLKEGFTFPGRDPRATIQEQGT--- 63

Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPA 507
           L I +  + D G Y+C     +G+    A L V    
Sbjct: 64  LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 76.3 bits (188), Expect = 7e-17
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 97  EAKMDIPVKVNTGKPEKPSILEPLH---DVSITEGESAVLSVQVGGEPSPKVEWYKDGKL 153
              +  PV +     E P I  P H         GE   L V   G+P P+V W K G  
Sbjct: 6   SGTLAQPVTI-REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64

Query: 154 IKDR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           +      + +        + Q +  D G Y + V  +     +   + V
Sbjct: 65  LDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 76.3 bits (188), Expect = 8e-17
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 221 SELDTLQVNTGKPEKPSILEPLH---DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK 277
             L          E P I  P H         GE   L V   G+P P+V W K G  + 
Sbjct: 7   GTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD 66

Query: 278 DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                + +        + Q +  D G Y + V  +     +   + V
Sbjct: 67  TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
             K    + L+   +  P P +VW +   PL +S       D  + +  +++A    D+G
Sbjct: 35  IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF-DTVFFVRQAARS-DSG 92

Query: 629 DYKVVATNELGSATHGARVTVDVEKVG 655
           +Y++    E    T   R+ V VEK G
Sbjct: 93  EYELSVQIENMKDTATIRIRV-VEKAG 118

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 12  PPTF---SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           PP         +    +   ++ L V     P P ++W   G PL  +   V +   D  
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFD-- 78

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
              ++  ++   + + G Y +  +    +    I ++V   K 
Sbjct: 79  ---TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV-VEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 9/116 (7%)

Query: 308 TNKEGTVESAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTSD-KADVKWFKDG 363
           +   GT+     +       +             K  E   L V      +  V W K G
Sbjct: 3   SGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGG 62

Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP----DQETSAELNVVELP 415
             + TS+ V +          +R  +  D GEY  S+         +  + VVE  
Sbjct: 63  APLDTSR-VHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 402 DQETSAELNVVELPPEISVPL---QDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIA 456
                  +  +  PP+I +P    Q       E+ +  +    G     V W K G  + 
Sbjct: 8   TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLD 66

Query: 457 FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
            +  V +          +  A   D+GEY   V  +     +   + V   
Sbjct: 67  -TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPE--VLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
           S     +    + +   P I  P       + K GE L + V F+  P P+  WT  G  
Sbjct: 5   SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64

Query: 735 IVPSKRVK 742
           +  + RV 
Sbjct: 65  L-DTSRVH 71

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 80.0 bits (196), Expect = 9e-17
 Identities = 24/246 (9%), Positives = 68/246 (27%), Gaps = 38/246 (15%)

Query: 114 PSILEPLHDVSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKDRQITS-----EKNT 165
            ++     +V +  G +  L            P + W K     +  ++       +   
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP-----YEPKESKETPPSPPPYVV 220
                     +  G +  + +       +    +V P     Y  + ++ +  +    + 
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF-GLD 121

Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ 280
           ++   L+V    P     +     V + EG    ++       +  V WY      ++ +
Sbjct: 122 AKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYE 181

Query: 281 ITSEK------------------------NTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
             + +                            L +      D GR   ++   +G +++
Sbjct: 182 TGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241

Query: 317 AANLNV 322
             +  +
Sbjct: 242 DRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 70.3 bits (171), Expect = 2e-13
 Identities = 25/245 (10%), Positives = 54/245 (22%), Gaps = 57/245 (23%)

Query: 13  PTFSKKTKPVYAEENSEVTLE---VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
            T       V       V L            P + W     P + T     +       
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 70  YVSIV-------------------------TIKSIKKREEGVYTVVAKN-----REGEAK 99
              +                           +  +  ++ G Y             G   
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

Query: 100 MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI 159
             + +KV    P     +     V + EG    ++       +  V WY      ++ + 
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182

Query: 160 TSEK------------------------NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA 195
            + +                            L +      D GR   ++   +G +++ 
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242

Query: 196 ANLNV 200
            +  +
Sbjct: 243 RSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 68.4 bits (166), Expect = 6e-13
 Identities = 30/248 (12%), Positives = 62/248 (25%), Gaps = 69/248 (27%)

Query: 236 PSILEPLHDVSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKDRQITS--------- 283
            ++     +V +  G +  L            P + W K     +  ++           
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 284 -----------------------EKNTHTLTLIQCSTKDKGRYSVKVTNKE-----GTVE 315
                                       TL L     +D GRY  +V         G   
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

Query: 316 SAANLNVDQGKAE---FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK 371
            +  L V          +   + ++V E  +  +    T    A+V W+      +  + 
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182

Query: 372 VTIEKKGTIRK---------------------LLIRNISVHDEGEYTC----SLPDQETS 406
            T +      +                     L+IR   + D G   C       + +  
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242

Query: 407 AELNVVEL 414
               ++++
Sbjct: 243 RSSTILKV 250

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 31/237 (13%), Positives = 56/237 (23%), Gaps = 68/237 (28%)

Query: 335 DLEVKERENAVLEVEVTSDKAD----VKWFKDGQEIKTSKKVTIEKKG------------ 378
           ++EV       L              + W K     +++K                    
Sbjct: 11  EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70

Query: 379 -----------------TIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL------- 414
                                L + ++   D G Y C +       E  +          
Sbjct: 71  YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130

Query: 415 -----PPEISVPLQDVKVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTLSIDGK 468
                        + V+V      +     T   +A V WY         E  T      
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLAN 190

Query: 469 KQK---------------------LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
           K +                     L+I +A + DAG   C +    G+ ++  + T+
Sbjct: 191 KNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 33/287 (11%), Positives = 57/287 (19%), Gaps = 99/287 (34%)

Query: 418 ISVPLQDVKVSRDEKASF--EIELTKGD--ALVKWYKDGKEIAFSENVTLS--------- 464
           +     +V+V            +L       ++ W K       ++    +         
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 465 --------------------IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
                                +     L +     +D G Y C+V     +         
Sbjct: 65  FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT-------- 116

Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
               EF     SV L                                 G      + +  
Sbjct: 117 ----EFGLDAKSVVLKVT------------------------------GHTPSNNVHVST 142

Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--------------------- 603
            E   V E   I +          ++ W+       +                       
Sbjct: 143 AEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSE 202

Query: 604 -KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
              R  F G    L ++ A   TDAG          G        T+
Sbjct: 203 IAGRASFSGAR-NLVIRAA-KITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 44.9 bits (105), Expect = 4e-05
 Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 17/112 (15%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                   + V  +E +++T+          ++ WY      +  +   +   ++ + + 
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195

Query: 72  SIV-----------------TIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
                                I++ K  + G         +GE   D    +
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 111 PEKPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSE 162
              P             ++    +       GG P P + W K+GK  K           
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
               +L +      DKG Y+  V N+ G++    +L+V
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 233 PEKPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSE 284
              P             ++    +       GG P P + W K+GK  K           
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
               +L +      DKG Y+  V N+ G++    +L+V
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 70.2 bits (172), Expect = 7e-15
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 557 QAPLFIERF----EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDG 611
           +AP +            V    T++       +P P++ W +N K      +        
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           ++  L ++      D G+Y  V  NE GS  H   + V
Sbjct: 63  QHWSLIMESVVPS-DKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 12  PPTFSKKTKP----VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
            P ++   K           + V         P P + W  NG+  ++   +      + 
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN- 62

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
                 + ++S+   ++G YT V +N  G       + V
Sbjct: 63  --QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 328 EFIKKL----DDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEK-KGTIR 381
            +            V              +    ++W K+G+E K   ++   K +    
Sbjct: 6   YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW 65

Query: 382 KLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
            L++ ++   D+G YTC           +  L+VV
Sbjct: 66  SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 446 VKWYKDGKEIAFSENV-TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
           ++W K+GKE      +    +  +   LI+ S    D G Y+C V  + G       L V
Sbjct: 40  MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 29/201 (14%)

Query: 230 TGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNT 287
           T    K  + LEP     + E +S  L  Q    P     +W+ +  LI           
Sbjct: 2   TEDLPKAVVFLEP-QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLI-------SSQA 53

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
            +  +   +  D G Y  +      T+     L V  G    + +      KE +   L 
Sbjct: 54  SSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWL--LLQAPRWVFKEEDPIHLR 109

Query: 348 VEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----L 400
                +     V + ++G+  K                 I   ++ D G Y C       
Sbjct: 110 CHSWKNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSK 161

Query: 401 PDQETSAELNVVELPPEISVP 421
                + ++ + +     ++ 
Sbjct: 162 NVSSETVQITITQGLAVSTIS 182

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 76.5 bits (188), Expect = 6e-16
 Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 29/189 (15%)

Query: 337 EVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEG 394
            V E+++  L+ +      D   +WF +   I +                I   +V D G
Sbjct: 18  RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSG 67

Query: 395 EYTCSLPDQETS--AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYK 450
           EY C       S   +L V      +  P    K    +         K  AL  V + +
Sbjct: 68  EYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEE--DPIHLRCHSWKNTALHKVTYLQ 125

Query: 451 DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTV-EAPA 507
           +GK   +                I  A L+D+G Y CR   G          +T+ +  A
Sbjct: 126 NGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177

Query: 508 VEFLTKLPS 516
           V  ++    
Sbjct: 178 VSTISSFFP 186

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 34/219 (15%), Positives = 57/219 (26%), Gaps = 52/219 (23%)

Query: 108 TGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNT 165
           T    K  + LEP     + E +S  L  Q    P     +W+ +  LI           
Sbjct: 2   TEDLPKAVVFLEP-QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLI-------SSQA 53

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
            +  +   +  D G Y  +      T+     L V               P +V      
Sbjct: 54  SSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVH-IGWL-----LLQAPRWVF----- 100

Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSE 284
                                  E +   L           KV + ++GK  K       
Sbjct: 101 ----------------------KEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH---- 134

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNV 322
            +     + + + KD G Y  +       V S    + +
Sbjct: 135 -HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 31/198 (15%)

Query: 25  EENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
            E   VTL+ +    PE     W++N   +                  S   I +    +
Sbjct: 20  LEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDD 65

Query: 84  EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPS 142
            G Y    +       + + V           +L+    V   E +   L          
Sbjct: 66  SGEYRCQTQLSTLSDPVQLEVH------IGWLLLQAPRWV-FKEEDPIHLRCHSWKNTAL 118

Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNVD 201
            KV + ++GK  K        +     + + + KD G Y  +       V S    + + 
Sbjct: 119 HKVTYLQNGKGRKYFH-----HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI- 172

Query: 202 PYEPKESKETPPSPPPYV 219
             +           PP  
Sbjct: 173 -TQGLAVSTISSFFPPGY 189

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 32/255 (12%), Positives = 69/255 (27%), Gaps = 79/255 (30%)

Query: 413 ELP-PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKK 469
           +LP   + +  Q  +V   +  +   +   +  D   +W+ +   I+           + 
Sbjct: 4   DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS----------SQA 53

Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQ 529
               I +A ++D+GEY C+   +   +    L V             +   P        
Sbjct: 54  SSYFIDAATVDDSGEYRCQTQLSTLSDP-VQLEVHIG--------WLLLQAP-------- 96

Query: 530 VELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
                                                    KE+  I L      + A  
Sbjct: 97  -------------------------------------RWVFKEEDPIHLRCHSWKNTALH 119

Query: 590 -IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
            + + +N K               N    + +A +  D+G Y         + +    V 
Sbjct: 120 KVTYLQNGKGRKYF--------HHNSDFYIPKA-TLKDSGSYFCRGLVGSKNVS-SETVQ 169

Query: 649 VDV-EKVGRPPINSI 662
           + + + +    I+S 
Sbjct: 170 ITITQGLAVSTISSF 184

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTH 166
              +P  +   +   + EG+SA    +V     P V W+KD + +K           N +
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 538

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            LT+ +    DKG Y+V+  N  GT E    LNV
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTH 288
              +P  +   +   + EG+SA    +V     P V W+KD + +K           N +
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 538

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            LT+ +    DKG Y+V+  N  GT E    LNV
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 607
                      P FI +     V E  +     +V AS  P + W ++++ L  S K  +
Sbjct: 472 RDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK 531

Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            ++G +  L +     + D G+Y V A N  G+      + V
Sbjct: 532 RYNGNDYGLTINRVKGD-DKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 274 KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKL 333
           +  K R     K       +    +     S++    +      A  +  + +  FI K 
Sbjct: 430 RYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKP 489

Query: 334 DDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
              EV E ++A     V  S    V W KD +E+K S K      G    L I  +   D
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 549

Query: 393 EGEYTC----SLPDQETSAELNV 411
           +GEYT     S   +E    LNV
Sbjct: 550 KGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 22/191 (11%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL--- 384
           +FI+KL   +   R       +         W   G       ++   +   IR  +   
Sbjct: 389 DFIRKLLLADPNTRMTIH---QALEHP----WLTPGNAPGRDSQIPSSRYTKIRDSIKTK 441

Query: 385 ----------IRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKAS 434
                     +  IS +               A  +  E  P   V     +V   + A+
Sbjct: 442 YDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSAN 501

Query: 435 FEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DT 492
           F   +      +V W+KD +E+  S       +G    L I     +D GEY+ R     
Sbjct: 502 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561

Query: 493 GDKESKATLTV 503
           G KE    L V
Sbjct: 562 GTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P F  K       E        R++A   P + W+ +   L+++ + +     + +   
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-- 539

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             +TI  +K  ++G YTV AKN  G  +  + + V
Sbjct: 540 --LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-- 614
                I   E  T      I     VK +P P++ WF N   L  S          N   
Sbjct: 2   HFAPTITFLESPTSDHHWCIPF--TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 615 ---ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
               L+L    +  + GDY ++A NE G              +G P I+
Sbjct: 60  YHGCLQLDNP-THMNNGDYTLIAKNEYGKDEKQISAHF----MGWPGID 103

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 67.5 bits (165), Expect = 6e-14
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS-Y 70
            PT +    P     +    +   +   P+P L W+YNG  L E+  +        H+ Y
Sbjct: 4   APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
              + + +      G YT++AKN  G+ +  I           P I
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM----GWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKNT 165
           P+I       S T      +   V G P P ++W+ +G ++ +              +  
Sbjct: 5   PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             L L   +  + G Y++   N+ G  E   + + 
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKNT 287
           P+I       S T      +   V G P P ++W+ +G ++ +              +  
Sbjct: 5   PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             L L   +  + G Y++   N+ G  E   + + 
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 337 EVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISV 390
                 +  +   V  + K  ++WF +G  +  SK +  +   T        L + N + 
Sbjct: 12  SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71

Query: 391 HDEGEYTC----SLPDQETSAELNVVELPP 416
            + G+YT          E     + +  P 
Sbjct: 72  MNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
           V   P I+        + D        +  G+    ++W+ +G  +  S+ +   I    
Sbjct: 1   VHFAPTITFLE---SPTSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 470 Q-----KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
                  L + +    + G+Y+     + G  E + +      
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 32/215 (14%), Positives = 60/215 (27%), Gaps = 57/215 (26%)

Query: 122 DVSITEGESAVLSVQ--VGGEPSPKVEWYKDGKLIKDRQITSEKNTH------------T 167
           +     G+   L +      +    ++W K     K  Q   EK T             T
Sbjct: 8   ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
           L +    T D+  Y V + + +G        ++   E                       
Sbjct: 68  LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER---------------------- 105

Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
                  KP I             +  L+ +V     P++  Y+DGK +        K +
Sbjct: 106 -----VSKPKI--------SWTCINTTLTCEVMNGTDPELNLYQDGKHL--------KLS 144

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             +   + +T    ++     NK     S   ++ 
Sbjct: 145 QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 24/190 (12%)

Query: 19  TKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIV-- 74
               +     ++ L++    +     D+ W    +  +        +         +   
Sbjct: 6   ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN 65

Query: 75  ---TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN-TGKPEKPSILEPLHDVSITEGES 130
               IK +K  ++ +Y V   + +G+  ++    +    +  KP I             +
Sbjct: 66  GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKI--------SWTCIN 117

Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
             L+ +V     P++  Y+DGK +        K +  +   + +T    ++     NK  
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHL--------KLSQRVITHKWTTSLSAKFKCTAGNKVS 169

Query: 191 TVESAANLNV 200
              S   ++ 
Sbjct: 170 KESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 38/180 (21%)

Query: 345 VLEVEVTSDKADVKWFKDGQEIKTS----KKVTIEKKGTIR-----KLLIRNISVHDEGE 395
           +   +++ D  D+KW K   + K +    +K T ++K T +      L I+++   D+  
Sbjct: 21  IPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDI 80

Query: 396 YTCSLPDQ------ETSAELNVVELP--PEISVPLQDVKVSRDEKASFEIELTKG-DALV 446
           Y  S+ D       E   +L + E    P+IS    +         +   E+  G D  +
Sbjct: 81  YKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINT--------TLTCEVMNGTDPEL 132

Query: 447 KWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
             Y+DGK +  S           Q++I        + ++ C  G+   KES +   V  P
Sbjct: 133 NLYQDGKHLKLS-----------QRVITHKWTTSLSAKFKCTAGNKVSKES-SVEPVSCP 180

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 33/224 (14%), Positives = 61/224 (27%), Gaps = 76/224 (33%)

Query: 430 DEKASFEIELTKGDALVKWYKDGKE-IAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
           D+    + E T     +  ++  KE     +   L  +G    L I     +D   Y   
Sbjct: 28  DDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT---LKIKHLKTDDQDIYKVS 84

Query: 489 VGDTGDK---ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLF 545
           + DT  K   E    L +                         Q  +S P I    +N  
Sbjct: 85  IYDTKGKNVLEKIFDLKI-------------------------QERVSKPKISWTCINTT 119

Query: 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 605
           +  TC                              +V     P +  +++ K L  S + 
Sbjct: 120 L--TC------------------------------EVMNGTDPELNLYQDGKHLKLSQR- 146

Query: 606 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
                   I  +     + + +  +K  A N++   +    V+ 
Sbjct: 147 -------VITHKW----TTSLSAKFKCTAGNKVSKESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 19/95 (20%)

Query: 19  TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKS 78
           +KP  +      TL   ++   +P+L  Y +G+ L+ +                 V    
Sbjct: 107 SKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR---------------VITHK 151

Query: 79  IKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEK 113
                   +   A N+  +     PV      PEK
Sbjct: 152 WTTSLSAKFKCTAGNKVSKESSVEPVSC----PEK 182

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP      +P    E     +E  +   P P L W +NG+PL+E+  +      +     
Sbjct: 8   PPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
             +          G YT++AKN  G A   I       +P     + P   +++T
Sbjct: 65  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF-LKEPFPVDEVSPTPPITVT 118

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 68.3 bits (167), Expect = 4e-14
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-------DRQITSEKNTH 166
           P ++               +   V G P P + W  +G+ ++       +     E +  
Sbjct: 9   PRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
            L   + +  + G Y++   N  GT     N +    EP    E  P+PP
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL-KEPFPVDEVSPTPP 114

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 615
             P  +   EE  ++ +  I     V+ +P P++ W  N +PL  S      +  E  I 
Sbjct: 6   YYPPRVVSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63

Query: 616 ---LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
              L   +  +  + G+Y ++A N LG+A          
Sbjct: 64  EGCLLFNKP-THYNNGNYTLIAKNPLGTANQTINGHFLK 101

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-------DRQITSEKNTH 288
           P ++               +   V G P P + W  +G+ ++       +     E +  
Sbjct: 9   PRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            L   + +  + G Y++   N  GT     N + 
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 336 LEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR----KLLIRNISV 390
            E + R    +E  V  +    + W  +GQ ++ SK + +E           LL    + 
Sbjct: 15  EEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH 74

Query: 391 HDEGEYTC----SLPDQETSAELNVVELPPEIS 419
           ++ G YT      L     +   + ++ P  + 
Sbjct: 75  YNNGNYTLIAKNPLGTANQTINGHFLKEPFPVD 107

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 11/112 (9%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
           V  PP +    +        +   E  +  G+    + W  +G+ +  S+ + +    + 
Sbjct: 5   VYYPPRVVSLEEPELR---LEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60

Query: 470 Q----KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPS 516
           +     L+       + G Y+       G                     P+
Sbjct: 61  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPT 112

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 71.9 bits (176), Expect = 3e-15
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDG------------KLIKDRQ 158
              +E     ++  GE      +V  E     P ++W+K              +L +  +
Sbjct: 8   ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67

Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
             S   T  + +I+      G Y  +VT K+     + +L V   E   +     S P
Sbjct: 68  RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH--ESTGTTPNIDSGP 123

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 553 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREI 608
           GS G    LFIE+ +  TVK    I  +AKVKA      P+I WF+     L+S   + +
Sbjct: 1   GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60

Query: 609 ---------FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
                           +++ +A  +  AG+Y+   T +    +    + V       P I
Sbjct: 61  QLKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119

Query: 660 NS 661
           +S
Sbjct: 120 DS 121

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 68.9 bits (168), Expect = 4e-14
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDG------------KLIKDRQ 280
              +E     ++  GE      +V  E     P ++W+K              +L +  +
Sbjct: 8   ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67

Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
             S   T  + +I+      G Y  +VT K+     + +L V +
Sbjct: 68  RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 17/106 (16%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD----KADVKWFKD---------GQEIKTSKKVTIE 375
           FI+K     VK  E+     +V ++    K  +KWFK          G+ ++  +     
Sbjct: 10  FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69

Query: 376 KKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPE 417
            +    ++ I     +  G Y C           S +L V E    
Sbjct: 70  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPLQETDE---VVFSDQS 65
              F +K +    +   ++T   ++ A     +P + W+        +     +   +  
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 66  DMHS--YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
           + HS  Y   + I   K    G Y      ++        ++V+      P+I
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 14/100 (14%)

Query: 421 PLQDVKVSRDEKASFEIELTKGDAL----VKWYKD---------GKEIAFSENVTLSIDG 467
             Q   V   E  +F  ++   D L    +KW+K          GK +   E        
Sbjct: 13  KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72

Query: 468 KKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
              ++ I  A    AG Y C V            L V   
Sbjct: 73  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 173
            S    +    +  G+   L  ++  +    + W +DG  + +   T       + +   
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE-EVEVQDS 61

Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
              D G Y+   ++  G+  +  ++NV         +  PS P 
Sbjct: 62  VPADSGLYACVTSSPSGSDTTYFSVNV--------SDALPSGPS 97

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 295
            S    +    +  G+   L  ++  +    + W +DG  + +   T       + +   
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE-EVEVQDS 61

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNV 322
              D G Y+   ++  G+  +  ++NV
Sbjct: 62  VPADSGLYACVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           G +       E   V     ++L  +++     SI W R+   L  S   R    GE   
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN--RTRITGEE-- 55

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
           +E++++    D+G Y  V ++  GS T    V V  + +   P +
Sbjct: 56  VEVQDSVPA-DSGLYACVTSSPSGSDTTYFSVNV-SDALPSGPSS 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
               +++   V   +   L   +  D   + W +DG ++  S +  I       ++ +++
Sbjct: 5   SSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRITG----EEVEVQD 60

Query: 388 ISVHDEGEYTC----SLPDQETSAELNVVELPP 416
               D G Y C          T   +NV +  P
Sbjct: 61  SVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
                V ++   V   +       L      + W +DG ++A S    ++     +++ +
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRIT----GEEVEV 58

Query: 475 FSAGLEDAGEYSCRVG-DTGDKESKATLTV-EAPA 507
             +   D+G Y+C     +G   +  ++ V +A  
Sbjct: 59  QDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
           G   +   + +         + L  RL       + W  +G  L E++    + +     
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE---- 55

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
               V ++     + G+Y  V  +  G       V V+   P  PS
Sbjct: 56  ----VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 72.6 bits (177), Expect = 8e-15
 Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 24/192 (12%)

Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS-TKDKGRY 181
           VSI+ G S  L+  +  +    ++W K+G+ +        K+   L L   S  +D G Y
Sbjct: 10  VSIS-GTSVELTCPL--DSDENLKWEKNGQELPQ------KHDKHLVLQDFSEVEDSGYY 60

Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
                             V   +  +             ++ D  Q N  K         
Sbjct: 61  VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKN-------L 113

Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 301
           +         S +L+  +       ++W KDG +I           +T  L   +   +G
Sbjct: 114 VQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIIS----PLNATKNTWNLGNNAKDPRG 166

Query: 302 RYSVKVTNKEGT 313
            Y  +   +   
Sbjct: 167 TYQCQGAKETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 41/186 (22%)

Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS-TKDKGRY 303
           VSI+ G S  L+  +  +    ++W K+G+ +        K+   L L   S  +D G Y
Sbjct: 10  VSIS-GTSVELTCPL--DSDENLKWEKNGQELPQ------KHDKHLVLQDFSEVEDSGYY 60

Query: 304 SVKVTNKEGT--------VESAANLNVDQGKAEFIKKLD---------------DLEVKE 340
                             V SA +   D  K +  KK D                ++   
Sbjct: 61  VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSR 120

Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
            + +VL +        +KW KDG  I                  + N +    G Y C  
Sbjct: 121 GDGSVL-LTCGLTDKTIKWLKDGSIISPLNATK-------NTWNLGNNAKDPRGTYQCQG 172

Query: 401 PDQETS 406
             + ++
Sbjct: 173 AKETSN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 52.2 bits (124), Expect = 8e-08
 Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 47/179 (26%)

Query: 352 SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNIS-VHDEGEYTCSLPDQETSAEL- 409
               ++KW K+GQE+              + L++++ S V D G Y C  P    +  L 
Sbjct: 24  DSDENLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCYTPASNKNTYLY 74

Query: 410 ---NVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVK------------------- 447
               V           +     +D+      +  K   LV+                   
Sbjct: 75  LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDK 134

Query: 448 ---WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
              W KDG  I+        ++  K    + +   +  G Y C+    G KE+   L V
Sbjct: 135 TIKWLKDGSIIS-------PLNATKNTWNLGNNAKDPRGTYQCQ----GAKETSNPLQV 182

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 26/203 (12%), Positives = 55/203 (27%), Gaps = 45/203 (22%)

Query: 441 KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKAT 500
             D  +KW K+G+E+    +  L +    +        +ED+G Y C             
Sbjct: 24  DSDENLKWEKNGQELPQKHDKHLVLQDFSE--------VEDSGYYVCYT---PASNKNTY 72

Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
           L ++A           V           + + +  D   K  +             Q   
Sbjct: 73  LYLKA----------RVGSADDAKKDAAKKDDAKKDDAKKDGS-------------QTNK 109

Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 620
                +    +  G++ L          +I W ++   +      +  ++  N   +   
Sbjct: 110 AKNLVQVDGSRGDGSVLLTCG---LTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD--- 163

Query: 621 ADSETDAGDYKVVATNELGSATH 643
                  G Y+     E  +   
Sbjct: 164 -----PRGTYQCQGAKETSNPLQ 181

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 18/173 (10%), Positives = 43/173 (24%), Gaps = 35/173 (20%)

Query: 584 ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 643
                ++ W +N +          +    +  L L++     D+G Y         +   
Sbjct: 23  LDSDENLKWEKNGQE---------LPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYL 73

Query: 644 GARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPE 703
             +  V                        + D  ++      +   + A          
Sbjct: 74  YLKARV-----------------------GSADDAKKDAAKKDDAKKDDAKKDGSQTNKA 110

Query: 704 VLVKKGEDLKIE--VRFK-ALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDD 753
             + + +  + +  V     L     +W  +G++I P    K          D
Sbjct: 111 KNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD 163

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 24/191 (12%)

Query: 17  KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQE----TDEVVFSDQSDMHSY 70
           + +  V+      + L +    + +   ++ W      + E        + S   ++ + 
Sbjct: 1   RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP-EKPSILEPLHDVSITEGE 129
             +  IK++ + + G Y V   +  G   ++  + +   +   KP I          E  
Sbjct: 61  GDL-KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMI--------YWECS 111

Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
           +A L+ +V      +++ Y+  + +        ++    T+    T  +  +  K  N+ 
Sbjct: 112 NATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKAVNRV 163

Query: 190 GTVESAANLNV 200
                   +N 
Sbjct: 164 SQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 67.3 bits (164), Expect = 4e-13
 Identities = 29/214 (13%), Positives = 60/214 (28%), Gaps = 55/214 (25%)

Query: 121 HDVSITEGESAVLSVQV--GGEPSPKVEWYKDGKLIKDRQITSEKNTH----------TL 168
             V    G    L++      +   +V W +   L+ + +   +               L
Sbjct: 4   GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL 63

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
            +   +  D G Y+V V +  GT      L++   E                        
Sbjct: 64  KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM----------------------- 100

Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
                 KP I          E  +A L+ +V      +++ Y+  + +        ++  
Sbjct: 101 ----VSKPMI--------YWECSNATLTCEVLEGTDVELKLYQGKEHL--------RSLR 140

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             T+    T  +  +  K  N+         +N 
Sbjct: 141 QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 26/173 (15%)

Query: 345 VLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK-------LLIRNISVHDEGEYT 397
           +   ++T D  +V+W +    +   K+       +          L I+N++  D G Y 
Sbjct: 18  IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYN 77

Query: 398 CSLPDQETSAELNV---VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGK 453
            ++     +  LN    + +   +S P+   + S    A+   E+ +G  + +K Y+  +
Sbjct: 78  VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSN---ATLTCEVLEGTDVELKLYQGKE 134

Query: 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
            +      T+S                    + C+  +   +ES     V  P
Sbjct: 135 HLRSLRQKTMSYQWT-----------NLRAPFKCKAVNRVSQES-EMEVVNCP 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 25/212 (11%), Positives = 49/212 (23%), Gaps = 75/212 (35%)

Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRVGDT-GDKES 497
           V+W +    +A  +                   L I +   +D+G Y+  V  T G +  
Sbjct: 30  VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89

Query: 498 KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQ 557
              L +                            +S P I  +  N  +  TC       
Sbjct: 90  NKALDL-----------------------RILEMVSKPMIYWECSNATL--TC------- 117

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
                                  +V       +  ++  + L S              + 
Sbjct: 118 -----------------------EVLEGTDVELKLYQGKEHLRSL---------RQKTMS 145

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +  +       +K  A N +   +    V  
Sbjct: 146 YQWTN---LRAPFKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIF-------DGENIILELKEADSETDAGDYKVVAT 635
                  + W R +  +    +K + F          N  L++K    + D+G Y V   
Sbjct: 23  MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNVTVY 81

Query: 636 NELGSATHGARVTV-DVEKVGRPPIN 660
           +  G+      + +  +E V +P I 
Sbjct: 82  STNGTRILNKALDLRILEMVSKPMIY 107

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 21/221 (9%), Positives = 49/221 (22%), Gaps = 46/221 (20%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN---------- 164
           ++  P    ++  G S  L          ++E  +      +   + +            
Sbjct: 4   TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63

Query: 165 --THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
                  +     +D G+Y   V            + V                      
Sbjct: 64  LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKAS--------YMRIDT----- 110

Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLIKDRQI 281
                                 + +       L+ Q  G P  +V W             
Sbjct: 111 --------------------RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIR 150

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           T E      ++++   +    +S    N      ++A ++ 
Sbjct: 151 TPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 69.3 bits (169), Expect = 3e-14
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 21/124 (16%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ------------ 280
                 ++         G S  L  +  G P P+++W+ +G+   D              
Sbjct: 19  SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 281 ----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDL 336
                  +    T+++     +D G Y  + +N            V     ++++    +
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV-----KWVRAQAVV 133

Query: 337 EVKE 340
            V E
Sbjct: 134 LVLE 137

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 69.3 bits (169), Expect = 3e-14
 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 16/112 (14%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ------------ 158
                 ++         G S  L  +  G P P+++W+ +G+   D              
Sbjct: 19  SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 159 ----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
                  +    T+++     +D G Y  + +N            V     +
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 17/118 (14%)

Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK---------- 605
                F++    +     G++ L  +   SP P I W+   +       +          
Sbjct: 19  SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 606 ---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
                        + +     E D G Y+  A+N+           V   K  R    
Sbjct: 79  HIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHLTRAPRV---KWVRAQAV 132

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 56.6 bits (136), Expect = 8e-10
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 10  GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
                F +            V L    V  P P++ W++ G+   +    ++        
Sbjct: 19  SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 70  YV---------SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPE 112
           ++         S ++I ++ + + G Y   A N      +    +V   + +
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 24/138 (17%)

Query: 301 GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKW 359
           G       +  G V            A F++     +     +  L  E       +++W
Sbjct: 2   GSSHHHHHHSSGLVPRG------SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55

Query: 360 FKDGQEIKTSKKVTIEKKGTIRK-------------LLIRNISVHDEGEYTC----SLPD 402
           + +GQ          +     R              + I  +   D G Y C        
Sbjct: 56  WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115

Query: 403 QETSAELNVVELPPEISV 420
              +    V  +  +  V
Sbjct: 116 NHLTRAPRVKWVRAQAVV 133

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 13/108 (12%), Positives = 24/108 (22%), Gaps = 17/108 (15%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKK 469
                         +           E   G  +  ++W+ +G+      +         
Sbjct: 18  GSHMAGFVQAPLSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 470 QK-------------LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
           +              + I +   ED G Y CR   D           V
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 65.4 bits (159), Expect = 3e-13
 Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 15/104 (14%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGKLIKDR------------Q 280
              +    D  +T G S   S +V G      P V+W+K   +                 
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64

Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
             S+     L +        G Y  +V+ K+    S  NL V +
Sbjct: 65  RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 64.6 bits (157), Expect = 6e-13
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGKLIKDR------------Q 158
              +    D  +T G S   S +V G      P V+W+K   +                 
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64

Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
             S+     L +        G Y  +V+ K+    S  NL V 
Sbjct: 65  RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREIFDGENI 614
             LF+ R ++  V   G+I   A+V  +     P + WF+     LSS   + +   ++ 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 615 ---------ILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
                     L + +A      G Y+   + +         +TV 
Sbjct: 64  DRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 53.5 bits (128), Expect = 6e-09
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 17/102 (16%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD----KADVKWFKD---------GQEIKTSKKVTIE 375
           F+ +  D EV    +      V          VKWFK          GQ ++        
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 376 KKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
            K  + +L I +      G Y C          ++  L V E
Sbjct: 67  SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDAL----VKWYKD---------GKEIAFSE 459
           +      +  QD +V+     +F   +     L    VKW+K          G+ +   +
Sbjct: 2   DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61

Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
           +   +      +L I  A     G Y C V        S   LTV
Sbjct: 62  SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 8/98 (8%)

Query: 9  EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGE---PLQETDEVVFS 62
          +     F  + +         +T   R+        P + W+         +    +   
Sbjct: 1  DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 63 DQSDMHS--YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
          D  D  S  Y+  + I   +    G Y      ++   
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD 98

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 111 PEKPSILEP------LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN 164
           P  P   +P      +  + +  G+   L  ++       + W +DG  + +   T    
Sbjct: 1   PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG 59

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              + +      D G Y+   ++  G+  +  ++NV
Sbjct: 60  -EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 233 PEKPSILEP------LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN 286
           P  P   +P      +  + +  G+   L  ++       + W +DG  + +   T    
Sbjct: 1   PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG 59

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              + +      D G Y+   ++  G+  +  ++NV
Sbjct: 60  -EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 607
           PT P     Q        E   V     ++L  +++     SI W R+   L+ S + R 
Sbjct: 1   PTLP--EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI 57

Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
             +     +E++++    D+G Y  V ++  GS T    V V
Sbjct: 58  TGE----EVEVRDSIPA-DSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
           P  + V ++ + V   +       L      + W +DG ++  S    ++     +++ +
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRIT----GEEVEV 64

Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTV 503
             +   D+G Y+C     +G   +  ++ V
Sbjct: 65  RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
              +++ L V   +   L   +  D   + W +DG ++  S +  I       ++ +R+ 
Sbjct: 12  VPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRITG----EEVEVRDS 67

Query: 389 SVHDEGEYTC----SLPDQETSAELNV 411
              D G Y C          T   +NV
Sbjct: 68  IPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P     + + +       + L  R +      + W  +G  L E++    +         
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCR-LRDDVQSINWLRDGVQLVESNRTRITG-------- 59

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             V ++     + G+Y  V  +  G       V V
Sbjct: 60  EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
            P +  P   P     +LV  G+ L++  R +        W  +G  +V S R +
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTR 56

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 19/121 (15%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-----DGE 612
            P  +E   +  V +     L  K +  P P+I W++  + + +              G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 613 NIILELKEA-DSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVH 670
              L +     S  D G Y  VA N LG A +H A + V                 +H H
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA-----AA-------HHHHH 116

Query: 671 H 671
           H
Sbjct: 117 H 117

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 286
            P I+E   D+ +++GE A L+ +  G P+P +EWYK G+ ++         R +    +
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 287 THTLTLI--QCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKK 332
              L ++  + S  D+G Y     N  G   S  A+L V    A     
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-AAAAHHHHH 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 164
            P I+E   D+ +++GE A L+ +  G P+P +EWYK G+ ++         R +    +
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 165 THTLTLI--QCSTKDKGRYSVKVTNKEGTVESA-ANLNV 200
              L ++  + S  D+G Y     N  G   S  A+L V
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFS-----E 459
             L   + PP I     D+ VS+ E A+   +  +G     ++WYK G+ +         
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCK-AEGRPTPTIEWYKGGERVETDKDDPRS 59

Query: 460 NVTLSIDGKKQKLIIFSAGL--EDAGEYSC----RVGDTGDKESKATLTVEAPA 507
           +  L   G    L I        D G Y C     +G+       A+L V A A
Sbjct: 60  HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH--DASLEVAAAA 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 9  EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
          E  PP   +    +   +    TL  +    P P + WY  GE ++   +   S +  + 
Sbjct: 6  EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 69 S---YVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
          S   +   +      + +EGVY  VA+N  GEA 
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEK 376
            +L  +      ++   DL V + E A L  +        ++W+K G+ ++T K      
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60

Query: 377 K-----GT--IRKLLIRNISVHDEGEYTC 398
           +     G+    +++    S  DEG Y C
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVC 89

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 69.1 bits (168), Expect = 5e-13
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 60/255 (23%)

Query: 12  PPTFSKKTKPVYAEENSEVTLE---VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD-- 66
            P  +  +  +       V +     R        + W ++ +    ++ V+F   +   
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64

Query: 67  ---------------MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
                           H+  S+  ++ ++K +EG+YT   + +     M  PV++    P
Sbjct: 65  PTGRFQNRSHLVGDTFHNDGSL-LLQDVQKADEGIYTCEIRLKNESMVMKKPVEL-WVLP 122

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKDRQIT-------- 160
           E+P       D+ +  G++  +   +         KV W        + +          
Sbjct: 123 EEP------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176

Query: 161 -------------------SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
                                +N  ++ L      D+G Y+  +   +        L+V 
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236

Query: 202 PYEPKESKETPPSPP 216
             E + +    P+PP
Sbjct: 237 QDEFQRT--ISPTPP 249

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 33/247 (13%), Positives = 72/247 (29%), Gaps = 39/247 (15%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQI----------- 159
           P +      + +  GES ++   V     +   +V+W          +            
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 160 ------------TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKE 207
                        +  N  +L L      D+G Y+ ++  K  ++     + +       
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------- 118

Query: 208 SKETPPSPPPYVVSELDTLQ----VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP 263
               P  P    V   DT Q    + + + ++ + +  +        E  VLS       
Sbjct: 119 -WVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177

Query: 264 SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
                  +    +      S +N  ++ L      D+G Y+  +   +        L+V 
Sbjct: 178 GKFQSLGRFRNRVDLTGDIS-RNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236

Query: 324 QGKAEFI 330
           Q + +  
Sbjct: 237 QDEFQRT 243

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 36/241 (14%), Positives = 63/241 (26%), Gaps = 53/241 (21%)

Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTS----DKADVKWFKDGQEIKTSKKVTIEKKGT 379
           QG          L V   E+ ++   V          V W     +   S+ V       
Sbjct: 3   QGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNL 62

Query: 380 IRK--------------------LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
                                  LL++++   DEG YTC +  +  S  +        + 
Sbjct: 63  SVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP 122

Query: 420 VPLQDVKVSRDEKA----SFEIELTKGDALVKWYKDGKEIA------------------- 456
              +D++V   +      S +    K    V W                           
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182

Query: 457 ---FSENVTLSIDGKKQK--LIIFSAGLEDAGEYSCRVGDTGDKESK-ATLTVEAPAVEF 510
              F   V L+ D  +    + + +    D G Y+C +     +  K   L V     + 
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242

Query: 511 L 511
            
Sbjct: 243 T 243

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 38/296 (12%), Positives = 77/296 (26%), Gaps = 72/296 (24%)

Query: 415 PPEISVPLQDVKVSRDEKA----SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
            P ++V    ++V   E        +    K    V W     +   SE V         
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64

Query: 471 K--------------------LIIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPAVE 509
                                L++      D G Y+C +    +    K  + +      
Sbjct: 65  PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--- 121

Query: 510 FLTKLPSVTLVPHLGDATFQVELSS----PDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
              + P    V        +  + S       +V W+                       
Sbjct: 122 --PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM---------------------FS 158

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
                +E+  +   + +++    S+  FRN   L     +       +  ++L+    E+
Sbjct: 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRN------DGSIKLQTV-KES 211

Query: 626 DAGDYKVVATNELGSATHGARVTVDVE--KVGRPPINSIDI--------DRNHVHH 671
           D G Y          +     + V  +  +    P    D         +++H HH
Sbjct: 212 DQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGILNGNQHHHHH 267

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 7/109 (6%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKR------EIF 609
             P  I   + +        ++   ++++P P  I W      L S    R         
Sbjct: 12  NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71

Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
           +G    L +           Y   A N  GS T   R+     ++  P 
Sbjct: 72  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDE--VVFSDQSDM 67
            PP  S  T+  +A    +  ++  + + P PD + W +    L+            S  
Sbjct: 13  GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71

Query: 68  HSYVSIVTIKSIKKR-EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
              +S +TI +I +   + +Y   A N  G     I +K    +   PS
Sbjct: 72  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 16/118 (13%)

Query: 96  GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLI 154
           G +     + VN      P I+          GE   +   +   P P ++ W     ++
Sbjct: 1   GSSGSSGTLTVNG-----PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55

Query: 155 KD---------RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNVDP 202
           +             T E    TLT+      D    Y+    N  G+      L    
Sbjct: 56  ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 16/109 (14%)

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKD----- 278
           TL VN      P I+          GE   +   +   P P ++ W     +++      
Sbjct: 8   TLTVNG-----PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62

Query: 279 ----RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNV 322
                  T E    TLT+      D    Y+    N  G+      L  
Sbjct: 63  YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA--DVKWFKDGQEI--K 367
           G+  S+  L V       I           E   ++  + S      + W      +   
Sbjct: 1   GSSGSSGTLTV--NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58

Query: 368 TSKKVTIEKK----GTIRKLLIRNISVHDEG-EYTCSLPDQ--ETSAELNVVELPPEISV 420
           TS + T+E      G I  L I NI   D    Y C+  +     +  + + E   E+S 
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 118

Query: 421 P 421
           P
Sbjct: 119 P 119

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 14/118 (11%)

Query: 402 DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD---ALVKWYKDGKEIA-- 456
              +S  L V   PP IS   Q       EK   +    +       + W      +   
Sbjct: 2   SSGSSGTLTVNG-PPIISST-QTQHALHGEKGQIKCF-IRSTPPPDRIAWSWKENVLESG 58

Query: 457 ----FSENVTLSIDGKKQKLIIFSAGLED-AGEYSCRVG-DTGDKESKATLTVEAPAV 508
               ++     + +G    L I +    D    Y+C      G       L  +   +
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 45/293 (15%), Positives = 79/293 (26%), Gaps = 27/293 (9%)

Query: 217 PYVVSEL-DTLQ-VNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 273
            +  S   D  +  + G  +KP +   P   V    G    L              YK+ 
Sbjct: 4   HHHGSGSDDDDKGSHMGGQDKPFLSAWPSAVV--PRGGHVTLRCH-YRHRFNNFMLYKED 60

Query: 274 KLIKDRQITSEKNTHTLTLIQCSTKDKGRY----SVKVTNKEGTVESAA-NLNVDQG-KA 327
           ++             +  +   +T   G Y    S   +    +  S    + V    + 
Sbjct: 61  RI-HIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRK 119

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKV-TIEKKGTIRKLLIR 386
             +       VK  E  +L+             K+G     S+ V  I    +     I 
Sbjct: 120 PSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIG 179

Query: 387 NISVHDEGEYTCS----LPDQETSA-----ELNVVELPPEISVPLQ-DVKVSRDEKASFE 436
            + +   G Y C         + SA     ++ V     + S+  Q   KV   E  +  
Sbjct: 180 PMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLS 239

Query: 437 IELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAG-LEDAGEYSCR 488
                   +    ++G            ++   Q    F  G     G Y C 
Sbjct: 240 CSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQAD--FPLGPATHGGTYRCF 290

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-------NIILELKEADSETDAGDYKVV 633
            V   PAPS+ W  N   L  +      F          +  L L +  +  + G+Y ++
Sbjct: 23  SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLL 81

Query: 634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV 669
           A N  G A+               P + I    +  
Sbjct: 82  AANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTS 117

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV---VFSDQSDMH 68
            P   +    V   E     +   +   P P L W +NG  L ET  +        ++  
Sbjct: 3   MPASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
                + +        G YT++A N  G+A   I        P + +  +P+ D + T G
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF-MDNPFEFNPEDPIPDTNSTSG 118

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 61.5 bits (149), Expect = 2e-11
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 14/126 (11%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----------DRQITSEK 163
           P+ ++    V         +   V G+P+P + W  +G ++           +       
Sbjct: 4   PASVQLHTAVE---MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL 223
               L L Q +  + G Y++   N  G   ++         P E     P P     S  
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF-MDNPFEFNPEDPIPDTNSTSGD 119

Query: 224 DTLQVN 229
              + +
Sbjct: 120 PVEKKD 125

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 56.9 bits (137), Expect = 6e-10
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----------DRQITSEK 285
           P+ ++    V         +   V G+P+P + W  +G ++           +       
Sbjct: 4   PASVQLHTAVE---MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
               L L Q +  + G Y++   N  G   ++     
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 12/95 (12%)

Query: 337 EVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK-------LLIRNI 388
              E  +  +   V       ++W  +G  +  +  +  E              L +   
Sbjct: 11  TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 70

Query: 389 SVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
           +  + G YT            S     ++ P E +
Sbjct: 71  THVNNGNYTLLAANPFGQASASIMAAFMDNPFEFN 105

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 8/90 (8%)

Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRVG-DTGDKES 497
           ++W  +G  +  +  +                 L +      + G Y+       G   +
Sbjct: 32  LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91

Query: 498 KATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
                      EF  + P        GD  
Sbjct: 92  SIMAAFMDNPFEFNPEDPIPDTNSTSGDPV 121

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 551 PLGSPGQAPLFIERF-EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREI 608
           PL +P +  +        ++V+    +  +   K+ SPA ++VW R +   L  P +   
Sbjct: 2   PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSRAMD 59

Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           F+G   IL ++      DAG Y    +N        A + V V
Sbjct: 60  FNG---ILTIRNVQPS-DAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 111 PEKP--SILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYK-DGKLIKDRQITSEKNTH 166
           P KP    +E     S+  G             P+  + W +     +  R +       
Sbjct: 6   PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN---G 62

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            LT+      D G Y    +N     +  A L+V
Sbjct: 63  ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 233 PEKP--SILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYK-DGKLIKDRQITSEKNTH 288
           P KP    +E     S+  G             P+  + W +     +  R +       
Sbjct: 6   PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN---G 62

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            LT+      D G Y    +N     +  A L+V
Sbjct: 63  ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 407 AELNVVELPPEISV-PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTL 463
           A L     P  ++V   +   V      +F            + W +             
Sbjct: 1   APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK-LPSRAMD 59

Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVE 504
             +G    L I +    DAG Y C   +     +  ATL V+
Sbjct: 60  F-NGI---LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 330 IKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
           +++     V+   +        S      + W +       S+   ++  G    L IRN
Sbjct: 14  VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFNGI---LTIRN 68

Query: 388 ISVHDEGEYTC----SLPDQETSAELNV 411
           +   D G Y C         + +A L+V
Sbjct: 69  VQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 19  TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIV---- 74
           ++ +Y      VT  V     P  ++LW    + + E +   F   S   + V +     
Sbjct: 2   SQQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 75  --TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAV 132
             TI ++   +E  Y + + N     K  + V        KP I          E  +A 
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLE---MVSKPMI--------YWECSNAT 109

Query: 133 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 192
           L+ +V      +++ Y+  + +        ++    T+    T  +  +  K  N+    
Sbjct: 110 LTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKAVNRVSQE 161

Query: 193 ESAANLNV 200
                +N 
Sbjct: 162 SEMEVVNC 169

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 63/215 (29%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------KDRQITSEKNTHT 167
            +      +    V     P  +V W K    +              K+R +  +  + +
Sbjct: 4   QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNR-VYLDTVSGS 61

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
           LT+   ++ D+  Y ++  N   T++    L V   E                       
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITDTMK--FFLYV--LEM---------------------- 95

Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
                  KP I          E  +A L+ +V      +++ Y+  + +        ++ 
Sbjct: 96  -----VSKPMI--------YWECSNATLTCEVLEGTDVELKLYQGKEHL--------RSL 134

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              T+    T  +  +  K  N+         +N 
Sbjct: 135 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 38/171 (22%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------KDRQITSEKNTHT 289
            +      +    V     P  +V W K    +              K+R +  +  + +
Sbjct: 4   QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNR-VYLDTVSGS 61

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEV-KERENAVLEV 348
           LT+   ++ D+  Y ++  N   T++    L V       ++ +    +  E  NA L  
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITDTMK--FFLYV-------LEMVSKPMIYWECSNATLTC 112

Query: 349 EVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
           EV      ++K ++  + +++ ++ T+  + T           +    + C
Sbjct: 113 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKC 152

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 34/163 (20%)

Query: 342 ENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIR----------KLLIRNISVH 391
            N    V       +V W K   ++   +        + +           L I N++  
Sbjct: 11  GNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS 70

Query: 392 DEGEYTCSLPDQETSAE--LNVVELP--PEISVPLQDVKVSRDEKASFEIELTKGDAL-V 446
           DE EY    P+   + +  L V+E+   P I     +  ++         E+ +G  + +
Sbjct: 71  DEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLT--------CEVLEGTDVEL 122

Query: 447 KWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
           K Y+  + +      T+S                    + C+ 
Sbjct: 123 KLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKCKA 154

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 31/237 (13%), Positives = 53/237 (22%), Gaps = 80/237 (33%)

Query: 423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ----------KL 472
           Q +        +F +        V W K   ++A  EN         +           L
Sbjct: 3   QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
            I++    D  EY     +      K  L V                            +
Sbjct: 63  TIYNLTSSDEDEYEMESPNI-TDTMKFFLYVLEM-------------------------V 96

Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
           S P I  +  N  +  TC                              +V       +  
Sbjct: 97  SKPMIYWECSNATL--TC------------------------------EVLEGTDVELKL 124

Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           ++  + L S  +K   +   N                +K  A N +   +    V  
Sbjct: 125 YQGKEHLRSLRQKTMSYQWTN------------LRAPFKCKAVNRVSQESEMEVVNC 169

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 57.4 bits (138), Expect = 3e-10
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQI-----------T 160
           P I       S   G     +          +   W  D + ++D ++            
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVD 201
             + T  L L       +G Y   ++N  G+  S  A L ++
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 57.4 bits (138), Expect = 3e-10
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQI-----------T 282
           P I       S   G     +          +   W  D + ++D ++            
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVD 323
             + T  L L       +G Y   ++N  G+  S  A L ++
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKREIFDGEN 613
           P    + E ++      +       +S     +  W  +N+ L  +           G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 614 I-----ILELKEADSETDAGDYKVVATNELGSAT-HGARVTVD 650
           +     IL L+     T  G Y+ V +N  GS+    A +T++
Sbjct: 71  LMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDL--LWYYNGEPLQETDEVVFS----DQSD 66
           P  + + +   A   S+V+      +  +  +   W  + E LQ+ +   ++       +
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
           +  Y +I+ +++++   EG Y  V  N  G +
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 58.8 bits (142), Expect = 5e-10
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 32/176 (18%)

Query: 245 VSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI------------------KDRQITSEK 285
           V+   GES  L ++   GE    + W  +   +                  K  +  +  
Sbjct: 8   VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT 67

Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL-NVDQGKAEFIKKLDDLEVKERENA 344
            +++L L     +D G Y  +++ K     S+  L  + Q +   +     L        
Sbjct: 68  QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCEL 127

Query: 345 VLEVEVTSDKADV--KWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
            L   V     +V  +W   G  + +   +T+            +  +  E +YTC
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTV----------SWDPRISSEQDYTC 173

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 46/178 (25%)

Query: 342 ENAVLEVEVTSDKA--DVKWFKDGQEIKT------------------SKKVTIEKKGTIR 381
           E+  L +E  + +    + W  +   +                     K++   +  +  
Sbjct: 14  ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS-- 71

Query: 382 KLLIRNISVHDEGEYTCSL----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
            L + N+ + D G Y   +      + +S  L ++     I V               E+
Sbjct: 72  -LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC---EL 127

Query: 438 ELT------KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
            LT        +   +W   G  ++   N+T+S D +          +    +Y+C  
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPR----------ISSEQDYTCIA 175

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 25/208 (12%), Positives = 52/208 (25%), Gaps = 59/208 (28%)

Query: 123 VSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI------------------KDRQITSEK 163
           V+   GES  L ++   GE    + W  +   +                  K  +  +  
Sbjct: 8   VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT 67

Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL 223
            +++L L     +D G Y  +++ K     S+  L +                       
Sbjct: 68  QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ-------------------- 107

Query: 224 DTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQIT 282
                         +      +         L+  V   + +    W   G  +      
Sbjct: 108 ---------LRNIQVT-NHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL------ 151

Query: 283 SEKNTHTLTLI-QCSTKDKGRYSVKVTN 309
              +   LT+        +  Y+    N
Sbjct: 152 --SSQPNLTVSWDPRISSEQDYTCIAEN 177

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 20/186 (10%), Positives = 46/186 (24%), Gaps = 24/186 (12%)

Query: 16  SKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQE------TDEVVFSDQSDMH 68
           S     V       VTL +   A  + + + W +N   L            +        
Sbjct: 2   SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQG 61

Query: 69  SYVSIV-----TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDV 123
             ++        + ++K  + G Y      +         ++    +     +      +
Sbjct: 62  KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR-ILRQLRNIQVT-NHSQL 119

Query: 124 SITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI-QCSTKDKGRY 181
                    L+  V   + +    W   G  +         +   LT+        +  Y
Sbjct: 120 FQNMTCELHLTCSVEDADDNVSFRWEALGNTL--------SSQPNLTVSWDPRISSEQDY 171

Query: 182 SVKVTN 187
           +    N
Sbjct: 172 TCIAEN 177

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 34/245 (13%), Positives = 64/245 (26%), Gaps = 80/245 (32%)

Query: 418 ISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAF-----SENVTLSIDGKKQ 470
           +S+    V     E  +  +E   G+ +  + W  +   +AF     +++  + +   KQ
Sbjct: 1   MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60

Query: 471 K----------LIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
                      L + +  +ED G Y  ++   T  K S  TL                  
Sbjct: 61  GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR----------------- 103

Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
                      +L +  +                                      + L 
Sbjct: 104 --------ILRQLRNIQVTNHSQL-------------------------FQNMTCELHLT 130

Query: 580 AKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638
             V+ A    S  W      L S P            L +      +   DY  +A N +
Sbjct: 131 CSVEDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAV 179

Query: 639 GSATH 643
            + + 
Sbjct: 180 SNLSF 184

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.7 bits (136), Expect = 6e-10
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKN---------- 164
           L P H + ++ GE  VL+     E +  ++  W       + +++ +             
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 165 -THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              TLT+   +  D+G Y+   ++   T +++  + V
Sbjct: 72  FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.7 bits (136), Expect = 6e-10
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKN---------- 286
           L P H + ++ GE  VL+     E +  ++  W       + +++ +             
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 287 -THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              TLT+   +  D+G Y+   ++   T +++  + V
Sbjct: 72  FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP--DLLWYYNGEPLQETDEVVFSDQSDMH 68
           I       +  +      ++ L            D  W Y     Q    V    ++   
Sbjct: 7   IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66

Query: 69  SYV----SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
           S +    S +TI  + + ++G+YT  A +     K    V+V+    EKP +
Sbjct: 67  SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFV 114

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 334 DDLEVKERENAVLEVEVTSD---KADVKWFKDGQEIKTSKKVTIEKKGTIRK-------- 382
             +E+   E  VL     ++     D  W     + +  K V  + K             
Sbjct: 16  HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75

Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISV 420
           L I  ++  D+G YTC     L  ++ S  + V E  P ++ 
Sbjct: 76  LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-KPFVAF 116

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 65/210 (30%)

Query: 118 EPLHDVSITEGESAVLSVQV------------GGEPSPKVEWYKDGKLI------KDRQI 159
           + + +V+   G +  L++                     +E++ +GK        KDR +
Sbjct: 4   QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR-V 62

Query: 160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYV 219
             +K    L +   S +D+G Y +++ ++         + V  YE               
Sbjct: 63  DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEV--YEM-------------- 105

Query: 220 VSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR 279
                          KP I          E  +A L+ +V      +++ Y+  + +   
Sbjct: 106 -------------VSKPMI--------YWECSNATLTCEVLEGTDVELKLYQGKEHL--- 141

Query: 280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTN 309
                ++    T+    T  +  +  K  N
Sbjct: 142 -----RSLRQKTMSYQWTNLRAPFKCKAVN 166

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 40/179 (22%)

Query: 240 EPLHDVSITEGESAVLSVQV------------GGEPSPKVEWYKDGKLI------KDRQI 281
           + + +V+   G +  L++                     +E++ +GK        KDR +
Sbjct: 4   QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR-V 62

Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVK-E 340
             +K    L +   S +D+G Y +++ ++         + V        + +    +  E
Sbjct: 63  DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEV-------YEMVSKPMIYWE 114

Query: 341 RENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
             NA L  EV      ++K ++  + +++ ++ T+  + T           +    + C
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKC 162

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 34/182 (18%)

Query: 19  TKPVYAEENSEVTLEVRLVAVPEPD------------LLWYYNGEPLQETDEVVFSDQSD 66
              V A   S VTL +    +                L ++ NG+         F D+ D
Sbjct: 6   VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESV--FKDRVD 63

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
           +      + I ++ K + G Y +   + E E +  I ++V           E +    I 
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEV----------YEMVSKPMIY 112

Query: 127 -EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
            E  +A L+ +V      +++ Y+  + +        ++    T+    T  +  +  K 
Sbjct: 113 WECSNATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKA 164

Query: 186 TN 187
            N
Sbjct: 165 VN 166

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 22/176 (12%), Positives = 44/176 (25%), Gaps = 46/176 (26%)

Query: 338 VKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRK------------- 382
                N  L +          + W          K +     G                 
Sbjct: 11  AITGSNVTLTILKHPLASYQRLTWLHT----TNQKILEYFPNGKKTVFESVFKDRVDLDK 66

Query: 383 ----LLIRNISVHDEGEYTCSL---PDQETSAELNVVELP--PEISVPLQDVKVSRDEKA 433
               L I N+S  D G+Y   +    + +    + V E+   P I     +  ++ +   
Sbjct: 67  TNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLE 126

Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
             ++EL         Y+  + +      T+S                    + C+ 
Sbjct: 127 GTDVELK-------LYQGKEHLRSLRQKTMSY-----------QWTNLRAPFKCKA 164

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 77/245 (31%)

Query: 413 ELPPEISVPL-QDVKVSRDEKASFEIEL-----TKGDALVKWYKDGKEIAFSENVT--LS 464
           +  P ++     +V ++  +      +      T    +++++ +GK+  F       + 
Sbjct: 4   QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63

Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
           +D     L I++   ED G+Y  R+    + + K T+ V                     
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEM------------------ 105

Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
                  +S P I  +  N  +  TC                              +V  
Sbjct: 106 -------VSKPMIYWECSNATL--TC------------------------------EVLE 126

Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
                +  ++  + L S              +  +          +K  A N +   +  
Sbjct: 127 GTDVELKLYQGKEHLRS---------LRQKTMSYQ---WTNLRAPFKCKAVNRVSQESEM 174

Query: 645 ARVTV 649
             V  
Sbjct: 175 EVVNC 179

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 58.5 bits (141), Expect = 9e-10
 Identities = 36/260 (13%), Positives = 63/260 (24%), Gaps = 77/260 (29%)

Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI------AFSENVTLSIDG 467
            P E  + L  + V               D  +  +  G+E       ++ +   L  D 
Sbjct: 25  FPVEKQLDLAALIVYW----------EMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ 74

Query: 468 KKQ---KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
                  L I    L+DAG Y C +   G    + T+ V AP                  
Sbjct: 75  LSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAP------------------ 116

Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
                                                I +             L  + + 
Sbjct: 117 ----------------------------------YNKINQRILVVDPVTSEHELTCQAEG 142

Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAGDYKVVATNELGS 640
            P   ++W  ++  +LS          E    N+   L+   + T    +          
Sbjct: 143 YPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR--INTTTNEIFYCTFRRLDPE 200

Query: 641 ATHGARVTVDVEKVGRPPIN 660
             H A + +    +  PP  
Sbjct: 201 ENHTAELVIPELPLAHPPNE 220

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 38/224 (16%)

Query: 19  TKPVYAEENSEVTLEVRLVAVPEPDL--------------LWYYNGEPLQETDEVVFS-- 62
                 E  S +T+E +     + DL              + + +GE   +     +   
Sbjct: 8   KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR 67

Query: 63  ---DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
               +  +    + + I  +K ++ GVY  +  +  G     I VKVN    +       
Sbjct: 68  ARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKIN----Q 122

Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNT-----HTLTLIQC 173
              V         L+ Q  G P  +V W   D +++  +  T+         +  + ++ 
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182

Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
           +T     +       +      A L +         E P + PP
Sbjct: 183 NTTTNEIFYCTFRRLDPEENHTAELVI--------PELPLAHPP 218

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 27/240 (11%), Positives = 59/240 (24%), Gaps = 65/240 (27%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSP-----KVEW---------YKDGKLIKDRQIT 160
           ++  P     +  G +  +  +   E         V W         +  G+     Q +
Sbjct: 3   TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62

Query: 161 SEKN------------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKES 208
           S +                L +     +D G Y   ++   G       + V+    K +
Sbjct: 63  SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKIN 121

Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE 268
                                               V         L+ Q  G P  +V 
Sbjct: 122 --------------------------------QRILVVDPVTSEHELTCQAEGYPKAEVI 149

Query: 269 WYK-DGKLIKDRQITSEKNT-----HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           W   D +++  +  T+         +  + ++ +T     +       +      A L +
Sbjct: 150 WTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 17/136 (12%)

Query: 383 LLIRNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
           L I ++ + D G Y C             + V   P         V          E EL
Sbjct: 82  LQITDVKLQDAGVYRCMISYGGADYKRITVKVNA-PYNKINQRILVVDPVTS----EHEL 136

Query: 440 T---KG--DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA---GLEDAGEYSCRVG- 490
           T   +G   A V W     ++   +  T +   +++   + S           + C    
Sbjct: 137 TCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRR 196

Query: 491 DTGDKESKATLTVEAP 506
              ++   A L +   
Sbjct: 197 LDPEENHTAELVIPEL 212

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLI----KDRQITSEKNTH 166
             P I+EP  D+++TEG +A L  +        V W   +G ++       +I    +  
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
           TL     + +D G Y+  V+N  G   ++A LNV      
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH 437

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLI----KDRQITSEKNTH 288
             P I+EP  D+++TEG +A L  +        V W   +G ++       +I    +  
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
           TL     + +D G Y+  V+N  G   ++A LNV  
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 335 DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTIRKLLIRNISV 390
           DL V E   A L+   ++    V W      + T      ++ +   GT   L   N++V
Sbjct: 350 DLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT---LNFTNVTV 406

Query: 391 HDEGEYTC----SLPDQETSAELNVVELPP 416
            D G YTC    S+ +   SA LNV     
Sbjct: 407 QDTGMYTCMVSNSVGNTTASATLNVTGTHH 436

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE- 607
           TC       AP+ +E   +  V E     L  +  ++   S+ W   N  +++    +  
Sbjct: 338 TCY------APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVR 390

Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
           I    +  L      +  D G Y  + +N +G+ T  A + V 
Sbjct: 391 IAVLSDGTLNFTNV-TVQDTGMYTCMVSNSVGNTTASATLNVT 432

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 381 RKLLIRNISVHDEGEYTCSLPDQ---ETSAELNVVEL---PPEISVPLQDVKVSRDEKAS 434
              +      +      C+ P         EL+        P I  P  D+ V+    A 
Sbjct: 301 SWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAE 360

Query: 435 FEIELTKGDALVKWYKDGKEI----AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
            +   +     V W      +    A+   + +  DG    L   +  ++D G Y+C V 
Sbjct: 361 LKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT---LNFTNVTVQDTGMYTCMVS 417

Query: 491 DT-GDKESKATLTV 503
           ++ G+  + ATL V
Sbjct: 418 NSVGNTTASATLNV 431

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS----SPK 604
            C       AP  ++   +  + E     L  K +  P  S+ W   N  +LS     P+
Sbjct: 349 QCS------APFIMDAPRDLNISEGRMAEL--KCRTPPMSSVKWLLPNGTVLSHASRHPR 400

Query: 605 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
              + DG    L        +D G Y  + TN  G++   A + V  
Sbjct: 401 ISVLNDG---TLNFSHV-LLSDTGVYTCMVTNVAGNSNASAYLNVST 443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLI----KDRQITSEKNTH 166
             P I++   D++I+EG  A L  +    P   V+W    G ++    +  +I+   +  
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG- 407

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPY 218
           TL        D G Y+  VTN  G   ++A LNV                 +
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTA-------GTHHHHHH 452

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLI----KDRQITSEKNTH 288
             P I++   D++I+EG  A L  +    P   V+W    G ++    +  +I+   +  
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG- 407

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           TL        D G Y+  VTN  G   ++A LNV 
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 335 DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTIRKLLIRNISV 390
           DL + E   A L+       + VKW      + +      ++++   GT   L   ++ +
Sbjct: 361 DLNISEGRMAELKCRTPP-MSSVKWLLPNGTVLSHASRHPRISVLNDGT---LNFSHVLL 416

Query: 391 HDEGEYTC----SLPDQETSAELNVVELPP 416
            D G YTC       +   SA LNV     
Sbjct: 417 SDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 15/134 (11%)

Query: 381 RKLLIRNISVHDEGEYTCSLPDQ---ETSAELNVVEL---PPEISVPLQDVKVSRDEKAS 434
              L   I  +      C  P         E++        P I    +D+ +S    A 
Sbjct: 312 AWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAE 371

Query: 435 FEIELTKGDALVKWYKDGKEIA----FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
            +       + VKW      +         +++  DG    L      L D G Y+C V 
Sbjct: 372 LKCRTPP-MSSVKWLLPNGTVLSHASRHPRISVLNDGT---LNFSHVLLSDTGVYTCMVT 427

Query: 491 DT-GDKESKATLTV 503
           +  G+  + A L V
Sbjct: 428 NVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 9/106 (8%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSY 70
            P      + +   E     L+ R    P   + W   NG  L        S    +   
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHA-----SRHPRISVL 404

Query: 71  VS-IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
               +    +   + GVYT +  N  G +     + V+T       
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHH 450

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 557 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           +     +R  ++  V E  T++ + +    P P+I+W    K L+S+     +    +  
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
           LE++ A    D G Y  +A N  G+ +  A + V
Sbjct: 443 LEVRYA-QVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 9e-07
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 101 DIPVKVNTGK--PEKPSILE-PLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLIKD 156
           D P  +        +  I +     V + EG +     +  G+P P + W      L+  
Sbjct: 370 DFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA 429

Query: 157 RQ---ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           +    +T   +  TL +     +D G Y     N  G     A+L+V
Sbjct: 430 KSNGRLTVFPDG-TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLIKDRQ---ITSEKNTH 288
                       V + EG +     +  G+P P + W      L+  +    +T   +  
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG- 441

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           TL +     +D G Y     N  G     A+L+V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEI---KTSKKVTIEKKGTIRKLLIRNISV 390
            + V E            D    + W    + +   K++ ++T+   GT   L +R   V
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT---LEVRYAQV 450

Query: 391 HDEGEYTC 398
            D G Y C
Sbjct: 451 QDNGTYLC 458

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                +K + V+ +E   V    R    P P +LW           + + S +S+    V
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSP-------RKHLVSAKSNGRLTV 437

Query: 72  S---IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
                + ++  + ++ G Y  +A N  G   M   + V +
Sbjct: 438 FPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 36/285 (12%), Positives = 79/285 (27%), Gaps = 31/285 (10%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 303
            V +  G S +++     +    +           ++       +       + ++  + 
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIETP----LPKKELLLPGNNRKVYELSNVQEDSQP 63

Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS----DKADVKW 359
                  +G   +   L V                   +N  L  +V          V  
Sbjct: 64  MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL 123

Query: 360 FKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC------------SLPDQETSA 407
            +  +E+K    V    + T   L+ R+   H    ++C               +     
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRD---HHGANFSCRTELDLRPQGLELFENTSAPY 180

Query: 408 ELNVVELPPEISVPLQDVKVSRDEKASFEIELT----KGDALVKWYKDGKEIAFSENVTL 463
           +L    LP      +    +  D + +    L       +A V      + +  +  VT 
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTY 238

Query: 464 SIDGKKQKLII-FSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
             D    K  +  +A  E     +C V      +E+  T+T+ + 
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 36/247 (14%), Positives = 69/247 (27%), Gaps = 32/247 (12%)

Query: 82  REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGE 140
           +E+      +   +G++     + V    PE+  +           G++  L  QV GG 
Sbjct: 58  QEDSQPMCYSNCPDGQSTAKTFLTVYW-TPERVELAPL--PSWQPVGKNLTLRCQVEGGA 114

Query: 141 PSPK--VEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL 198
           P     V   +  K +K      E    T T++         +S +              
Sbjct: 115 PRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174

Query: 199 NVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQ 258
           N       ++   P +PP  V                P +LE              +   
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVS---------------PRVLE--------VDTQGTVVCS 211

Query: 259 VGGE-PSPKVEWY-KDGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVE 315
           + G  P  + + +   G    +  +T   ++ +       T  D+G   +      G   
Sbjct: 212 LDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS 271

Query: 316 SAANLNV 322
                 V
Sbjct: 272 QETLQTV 278

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 9/107 (8%)

Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCST 175
                    G++  +      +   KV      + +         S +N   L   +   
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310

Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKET-----PPSPPP 217
           +D G Y+     +      +  L V  +      +T      P   P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHP 357

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
                    T+ +    K      +    +N+ +LS      +    N  L  K+     
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKV-QVE 311

Query: 626 DAGDYKVVATNELGSATHGARVTV 649
           D G Y   A  E  + T    + V
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKV 335

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 4/85 (4%)

Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCST 297
                    G++  +      +   KV      + +         S +N   L   +   
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310

Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
           +D G Y+     +      +  L V
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKV 335

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 5/92 (5%)

Query: 24  AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
           A     +T+           +    + E +             +      +  K ++  +
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQ-----GSNGSVSVRNGDLFFKKVQVED 312

Query: 84  EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
            GVYT  A        + + +KV         
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTLHGHH 344

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 332 KLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIRNI 388
           K    E    +   +  +        V      +++  + S      + G    L  + +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD---LFFKKV 308

Query: 389 SVHDEGEYTC----SLPDQETSAELNVVELPPE 417
            V D G YTC       ++  S EL V      
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYNFTLH 341

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 34/294 (11%), Positives = 86/294 (29%), Gaps = 53/294 (18%)

Query: 40  PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
             P     YN +          S+ +   +    ++I +I   + G Y    K R+G   
Sbjct: 42  AGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYY-CVKFRKGSPD 100

Query: 100 MDIP----VKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLI 154
            +       +++        ++      +  +   +      G  P    ++W+K+G  +
Sbjct: 101 TEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL 160

Query: 155 KDRQIT----SEKNTHT----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
            D Q       E  +++      ++        +   +V +          L  DP    
Sbjct: 161 SDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHV--------TLQGDPLRGT 212

Query: 207 ESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSP 265
            +       PP +                           +       ++ QV    P  
Sbjct: 213 ANLSETIRVPPTLEVTQQ---------------------PVRAENQVNVTCQVRKFYPQR 251

Query: 266 -KVEWYKDGKLIKDRQITS---EKN-----THTLTLIQCSTKDKGRYSVKVTNK 310
            ++ W ++G + +    ++    K+        L +   + +D  + + +V + 
Sbjct: 252 LQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 13/116 (11%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQI---TS 161
            S+      +++ EG++  L        +  ++W                K+ +      
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
             N  ++T+   + +D+G Y       +        + V      E    P    P
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPSHWRP 116

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 14/108 (12%)

Query: 327 AEFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIR---- 381
                  + + V+E +   L+   +    + ++W           +  + K    +    
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 382 -----KLLIRNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVP 421
                 + + N+++ DEG Y C   S        ++ V+    +    
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLA-TMKGEFC 108

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQI---TS 283
            S+      +++ EG++  L        +  ++W                K+ +      
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             N  ++T+   + +D+G Y       +        + V
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQ---- 470
             ++   + + V   +  + +   + + ++ ++W        F     +  + K Q    
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 471 -----KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
                 + + +  L+D G Y C          +  + V A       + PS
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPS 112

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKD------------GKLIKDRQ 158
              L+    VS+  G+ AV+  +V G+     P ++W+K                 +   
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72

Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP 202
             S   T  L + +    D+G Y ++V  K+       N++V+ 
Sbjct: 73  SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKD------------GKLIKDRQ 280
              L+    VS+  G+ AV+  +V G+     P ++W+K                 +   
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72

Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
             S   T  L + +    D+G Y ++V  K+       N++V+
Sbjct: 73  SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFR-NNKPLLSSPKKR 606
             G+     +F+++ +  +V+      ++AKV        P+I WF+     L S    R
Sbjct: 5   SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64

Query: 607 ----EIFDGENII----LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
               E  +  + +    L + +     D G Y++    +    + G  + V+  +
Sbjct: 65  FSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL----VKWYK---------D 451
           +S      E           V V   + A    ++   +      +KW+K          
Sbjct: 2   SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61

Query: 452 GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAP 506
           G   +F E+   + +    +L I    L D G Y   V            + VEAP
Sbjct: 62  GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 17/115 (14%)

Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD----KADVKWFK---------D 362
           S+ +   ++    F+KK D + V+  ++AV+  +V       K  +KWFK          
Sbjct: 2   SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61

Query: 363 GQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ----ETSAELNVVE 413
           G      +           +L I  + + D G Y   +  +         ++V  
Sbjct: 62  GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 59/214 (27%)

Query: 122 DVSITEGESAVLSVQVGGEPSPK-VEWYKDGKLIKDRQITSEK----------------- 163
            V +  G+S +L     G      +EW+   +     ++ S +                 
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68

Query: 164 ------NTHTLTLIQCSTKDKGRYS-VKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
                 +   L L +    D+  Y  V      GT E+ A LNV                
Sbjct: 69  PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV---------------- 112

Query: 217 PYVVSELDTLQVNTGKPEKPSILEPLHDVSI-TEGESAVLS-VQVGGEPSPKVEWYKDGK 274
                          KPE   +      +S+  +    + +     G P+PK+ WY++G+
Sbjct: 113 -------------FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ 159

Query: 275 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 308
            ++     + +   T   ++ ++   G  S+  T
Sbjct: 160 RLEVPVEMNPEGYMTSRTVREAS---GLLSLTST 190

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 21  PVYAEENSEVTLEVRLVAVPEPDLL-WYYNGEPLQETDEVVFSDQSDMHSYVSIV----- 74
            V       V L+       +  +L W+                Q               
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68

Query: 75  -----------TIKSIKKREEGVYT-VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHD 122
                       +   +  +E  Y  VV     G A+    + V   KPE   +      
Sbjct: 69  PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF-AKPEATEVSPNKGT 127

Query: 123 VSI-TEGESAVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 180
           +S+  +    + +     G P+PK+ WY++G+ ++     + +   T   ++ ++   G 
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREAS---GL 184

Query: 181 YSVKVT 186
            S+  T
Sbjct: 185 LSLTST 190

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 35/222 (15%), Positives = 68/222 (30%), Gaps = 52/222 (23%)

Query: 334 DDLEVKERENAVL--EVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK--------- 382
             +EV   ++ +L      T D   ++WF   +     +  + E +G+  +         
Sbjct: 8   PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67

Query: 383 -----------LLIRNISVHDEGEYTC-----SLPDQETSAELNVVELP--PEISVPLQD 424
                      L++    V DE +Y C     +    E +A LNV   P   E+S     
Sbjct: 68  SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127

Query: 425 VKVSRDEKASFEIELTKG---DALVKWYKDGKEIAFSENVTLSIDGKKQK---------- 471
           + V  D         ++       + WY++G+ +     +        +           
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187

Query: 472 ---LIIFSAGLEDAGEYSCRV------GDTGDKESKA-TLTV 503
              L +     +    + C        G  G  +S    LT+
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 43/199 (21%)

Query: 244 DVSITEGESAVLSVQVGGEPSPK-VEWYKDGKLIKDRQITSEK----------------- 285
            V +  G+S +L     G      +EW+   +     ++ S +                 
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68

Query: 286 ------NTHTLTLIQCSTKDKGRYS-VKVTNKEGTVESAANLNVDQ--GKAEFIKKLDDL 336
                 +   L L +    D+  Y  V      GT E+ A LNV       E       L
Sbjct: 69  PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128

Query: 337 EVKERENAVLEVEVTSD---KADVKWFKDGQEIKTSKKVTIEKKGTIRK----------- 382
            V E     +    + +      + W+++GQ ++   ++  E   T R            
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188

Query: 383 --LLIRNISVHDEGEYTCS 399
             L +R      +  + C+
Sbjct: 189 STLYLRLRKDDRDASFHCA 207

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 29/154 (18%)

Query: 417 EISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK--- 471
            +SVP   V+V R +          T    +++W+   +  A     +  + G + +   
Sbjct: 3   RLSVP-PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61

Query: 472 -----------------LIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAP--AVEF 510
                            L++  A + D  +Y C V  G  G  E+ A L V A   A E 
Sbjct: 62  HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121

Query: 511 LTKLPSVTLVPHLGDATF--QVELSSPDIQVKWL 542
                +++++               +P  ++ W 
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWY 155

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 40/294 (13%)

Query: 237 SILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQITSEKN-------- 286
            IL+   D       +  L   V G  P   ++ W +DG+++     T+           
Sbjct: 11  KILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST 70

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAA---NLNVDQGKAEFIKKLDDLEVKEREN 343
              LTL Q        Y+ +VT +  T E +      +  +G + ++ +    ++  R++
Sbjct: 71  QSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKS 130

Query: 344 AVLEVEVTS-----DKADVKWFKDGQEIKTSKKVTIEKK-----GTIRKLLIRNISVHDE 393
             +   V           + W +   +         EK+          L +      + 
Sbjct: 131 PTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEG 190

Query: 394 GEYTCSLPDQETSAELNVVELPPEISVPLQDVKV---SRDEKASFEIELT-------KGD 443
             Y C +        L              +V          +  +  L          D
Sbjct: 191 ETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPED 250

Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQ-------KLIIFSAGLEDAGEYSCRVG 490
             V+W  +  ++  + + T      K        +L +  A  E   E+ CR  
Sbjct: 251 ISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAV 304

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 40/284 (14%), Positives = 81/284 (28%), Gaps = 50/284 (17%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQITSEKN-------- 164
            IL+   D       +  L   V G  P   ++ W +DG+++     T+           
Sbjct: 11  KILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST 70

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
              LTL Q        Y+ +VT +  T E +     D      S                
Sbjct: 71  QSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSR----------- 119

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE 284
                      PS  +     S T   + ++      + + ++ W +      +     E
Sbjct: 120 -----------PSPFDLFIRKSPTI--TCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKE 166

Query: 285 K--------NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE----FIKK 332
           +         T TL +      +   Y  +VT+         +     G       +   
Sbjct: 167 EKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFA 226

Query: 333 LDDLEVKERENAVLEVEVTS---DKADVKWFKDGQEIKTSKKVT 373
             +     R+   L   + +   +   V+W  +  ++  ++  T
Sbjct: 227 TPE-WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHST 269

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 30/186 (16%), Positives = 54/186 (29%), Gaps = 22/186 (11%)

Query: 39  VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY-TVVAKNREGE 97
           V    ++W  N   + +    +      ++   S VT   I      +   ++   +  +
Sbjct: 37  VNANYIVWKTNHFTIPKEQYTI------INRTASSVTFTDIASLNIQLTCNILTFGQLEQ 90

Query: 98  AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKL 153
               I +      PEKP  L       + EG+        G E        ++       
Sbjct: 91  NVYGITIIS-GLPPEKPKNLS----CIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHK 145

Query: 154 IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPP 213
             D +   +  T                 V+  N  G V S   +N DP       +  P
Sbjct: 146 FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH-INFDPVY-----KVKP 199

Query: 214 SPPPYV 219
           +PP  +
Sbjct: 200 NPPHNL 205

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 22/206 (10%), Positives = 43/206 (20%), Gaps = 42/206 (20%)

Query: 122 DVSITEGESAVLS-------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 174
              +    +           +      +  + W  +   I   Q T    T +       
Sbjct: 12  SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDI 71

Query: 175 TKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPE 234
                + +  +       ++   + +            P                   PE
Sbjct: 72  ASLNIQLTCNILTFGQLEQNVYGITI--------ISGLP-------------------PE 104

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKLIKDRQITSEKNTHTL 290
           KP  L       + EG+        G E        ++         D +   +  T   
Sbjct: 105 KPKNLS----CIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCT 160

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVES 316
                         V+  N  G V S
Sbjct: 161 VDYSTVYFVNIEVWVEAENALGKVTS 186

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 60/230 (26%)

Query: 120 LHDVSITEGESAVLS----VQVGGEPSPKVEWYKDGKLI--------------KDRQITS 161
           +  V+    E A LS    V V      ++ W K+ K++              K+R I  
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 162 EKNTHTLTLIQCSTKDKGRYS-VKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVV 220
             N  ++ ++     D+G Y  V +  ++   +      V                    
Sbjct: 61  ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV-------------------- 100

Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDR 279
               TL V       PSI     D  I       +     GG P P + W ++G+ +   
Sbjct: 101 ----TLSVKA-DFPTPSI----SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAI 151

Query: 280 QITSEKN--------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
             T  ++        +  L     +      +   +      V    N N
Sbjct: 152 NTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNWN 198

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 43/188 (22%)

Query: 337 EVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKK------------VTIEKKGT 379
             + +E A L         +     + W K+ + + T                  +    
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 380 IRKLLIRNISVHDEGEYTCSL---------PDQETSAELNVVELPPEISVPLQDVKVSRD 430
           +  ++I  +   DEG Y C +          +      L+V    P  S+   ++  S  
Sbjct: 65  LS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN- 122

Query: 431 EKASFEIELT---KG---DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA---GLED 481
                   +     G   +  + W ++G+E+  + N T+S D + +   + S     +  
Sbjct: 123 -----IRRIICSTSGGFPEPHLSWLENGEELN-AINTTVSQDPETELYAVSSKLDFNMTT 176

Query: 482 AGEYSCRV 489
              + C +
Sbjct: 177 NHSFMCLI 184

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 20/172 (11%)

Query: 40  PEPDLLWYYNGEPLQE---TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96
            +  +L   +G+        +  +F   ++    +SI  I +++  +EG Y  V    E 
Sbjct: 35  EKKMVLTMMSGDMNIWPEYKNRTIFDITNN----LSI-VILALRPSDEGTYECVVLKYEK 89

Query: 97  EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK 155
           +A     +   T   +       + D  I       +     GG P P + W ++G+ + 
Sbjct: 90  DAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELN 149

Query: 156 DRQITSEKN--------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 199
               T  ++        +  L     +      +   +      V    N N
Sbjct: 150 AINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNWN 198

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 424 DVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLE 480
              VS +E A   I   K   +V     G    + E        I      ++I +    
Sbjct: 17  GHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS-IVILALRPS 75

Query: 481 DAGEYSCRV----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS-- 534
           D G Y C V     D   +E  A +T+   +V+     PS++          ++  S+  
Sbjct: 76  DEGTYECVVLKYEKDAFKREHLAEVTL---SVKADFPTPSISDFEIPTSNIRRIICSTSG 132

Query: 535 --PDIQVKWLN 543
             P+  + WL 
Sbjct: 133 GFPEPHLSWLE 143

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 52.9 bits (126), Expect = 4e-07
 Identities = 27/205 (13%), Positives = 64/205 (31%), Gaps = 24/205 (11%)

Query: 30  VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
           + + V++   P  + +W  +G+             +   +   +          + ++ V
Sbjct: 94  LNVYVKVNNGPLGNPIWNISGD------------PTRTWNRAELAISTFWPNFYQVIFEV 141

Query: 90  VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK 149
           +    +G   +D    +       P  L    +V +  G+ A       G        + 
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWL 200

Query: 150 DGKLIKD------RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPY 203
            G  ++D      +  +S +   +  ++  + +D G+Y   +  + G   S     V   
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260

Query: 204 EPKESKETPPSPPPYVVSELDTLQV 228
            P      P +PP         L +
Sbjct: 261 PP-----VPIAPPQLASVGATYLWI 280

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 26/224 (11%), Positives = 56/224 (25%), Gaps = 40/224 (17%)

Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
           S +      + V+V   P     W   G         +         I     +  +   
Sbjct: 87  SNSPPGLLNVYVKVNNGPLGNPIWNISGD-------PTRTWNRAELAISTFWPNFYQVIF 139

Query: 184 KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH 243
           +V         A                           +D ++V      +      + 
Sbjct: 140 EVITSGHQGYLA---------------------------IDEVKVLGHPCTRTPHFLRIQ 172

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD------RQITSEKNTHTLTLIQCST 297
           +V +  G+ A       G        +  G  ++D      +  +S +   +  ++  + 
Sbjct: 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232

Query: 298 KDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKER 341
           +D G+Y   +  + G   S     V +     I       V   
Sbjct: 233 RDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT 276

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 3/117 (2%)

Query: 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-K 604
           I     LG P        R +   V                      +     +  +P K
Sbjct: 152 IDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK 211

Query: 605 KREIFDGENIILELKEAD-SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
           + ++      I      + ++ DAG Y+ +   E G         V V++   P   
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV-VKEPPVPIAP 267

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 27/219 (12%), Positives = 71/219 (32%), Gaps = 32/219 (14%)

Query: 19  TKPVYAEENSEVTLE--------VRLVAV------PEPDLLWYYNGEPLQETDEVVFSD- 63
           + P+ A    +  L            + +          +  Y +G+ +++     +   
Sbjct: 11  SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGR 70

Query: 64  ----QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
               +  + +  + + I ++   + G Y    ++ +   K  + +KV     +       
Sbjct: 71  TSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSD------L 124

Query: 120 LHDVSITEGESAVLSVQ-VGGEPSPKVEWYKD-GKLIKDRQITSEKNTHTLTLIQCS--- 174
             DV   +     L  +  G  P P+++W  + G+ I   +     +   L  +  S   
Sbjct: 125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM 184

Query: 175 -TKDKGRYSVKVTNKEGTVESAANLNV-DPYEPKESKET 211
                   S  + +    +E  A++++ DP+        
Sbjct: 185 RGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSAQHHH 223

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 342 ENAVLEVEVTSDKA----DVKWFK-----------DGQEIKTSKKVTIEKKGTIRK---- 382
           E+A L   +    +    ++KW             DG+E++  +      + +I +    
Sbjct: 20  EDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGIT 79

Query: 383 -----LLIRNISVHDEGEYTCSLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKASFE 436
                L I N++  D G+Y C   D +   +  V +++    S    DVK  +D     E
Sbjct: 80  AGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLE 139

Query: 437 IELTKG--DALVKWYKDGKEI--AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-D 491
              T       ++W  +  E        V     G                  SC +   
Sbjct: 140 CRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSS 199

Query: 492 TGDKESKATLTVEAP 506
               E  A++++  P
Sbjct: 200 LLGLEKTASISIADP 214

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 37/211 (17%)

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPK---VEW-----------YKDGKLIKDRQIT 282
           S+L P   +    GE A L   +    S +   ++W           Y DGK ++DRQ  
Sbjct: 6   SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65

Query: 283 SEKN------------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFI 330
             +                L +   +  D G+Y     + +   ++   L   +  A   
Sbjct: 66  PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL---KVAALGS 122

Query: 331 KKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIR 386
               D++  +     LE   T    +  ++W  +  E        V  +  G        
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASV 182

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVE 413
            +        +C    SL   E +A +++ +
Sbjct: 183 IMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 66/240 (27%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPK---VEW-----------YKDGKLIKDRQIT 160
           S+L P   +    GE A L   +    S +   ++W           Y DGK ++DRQ  
Sbjct: 6   SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65

Query: 161 SEKN------------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKES 208
             +                L +   +  D G+Y     + +   ++   L V        
Sbjct: 66  PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSD-- 123

Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-VGGEPSPKV 267
                                              DV   +     L  +  G  P P++
Sbjct: 124 --------------------------------LHVDVKGYKDGGIHLECRSTGWYPQPQI 151

Query: 268 EWYKD-GKLIKDRQITSEKNTHTLTLIQCS----TKDKGRYSVKVTNKEGTVESAANLNV 322
           +W  + G+ I   +     +   L  +  S           S  + +    +E  A++++
Sbjct: 152 QWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 6/106 (5%)

Query: 113 KPSILEPLHDVSITEGESAVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
            P+       ++   G+S  L+   V  E +  V W                    L L 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVD--PYEPKESKETPPSP 215
                D G YS     + G      +L VD  P EP+ S       
Sbjct: 66  SVQLHDSGNYSC---YRAGRPAGTVHLLVDVPPEEPQLSCFRKSPL 108

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 235 KPSILEPLHDVSITEGESAVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
            P+       ++   G+S  L+   V  E +  V W                    L L 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
                D G YS     + G      +L VD
Sbjct: 66  SVQLHDSGNYSC---YRAGRPAGTVHLLVD 92

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
            P   V    +     +  +      + +  A V W           +    +  +   L
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR---L 62

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
           ++ S  L D+G YSC     G       L V+ P
Sbjct: 63  LLRSVQLHDSGNYSCYRA--GRPAGTVHLLVDVP 94

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 334 DDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
             L     ++  L        D A V W        +         G  R+LL+R++ +H
Sbjct: 14  GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP---SRWAGMGRRLLLRSVQLH 70

Query: 392 DEGEYTCSLPDQ-ETSAELNVVELPPEISV 420
           D G Y+C    +   +  L V   P E  +
Sbjct: 71  DSGNYSCYRAGRPAGTVHLLVDVPPEEPQL 100

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 35/211 (16%)

Query: 20  KPVYAEENSEVTL-------EVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQ-------- 64
           K V  +E   V +            + P   + W+ +GE     + V  ++         
Sbjct: 8   KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67

Query: 65  -------SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPS 115
                   D+      ++I   +  + G Y    +       +     + +      +  
Sbjct: 68  QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127

Query: 116 ILEPLHDVSITEGESAVLSVQV----GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
            +  L  +    G    LS  +       P     W  +     D + T    +  LTL 
Sbjct: 128 DIHFLEPL--ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR---SSELTLT 182

Query: 172 QCSTKDKGRYSVKVTNKEG--TVESAANLNV 200
                     + ++  +    T E    LNV
Sbjct: 183 PRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 30/218 (13%)

Query: 122 DVSITEGESAVLS-------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 174
            V++ EG   ++              P   V W++DG++    ++ +  N       +  
Sbjct: 9   SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR----RVK 64

Query: 175 TKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE----TPPSPPPYVVSELDTLQVNT 230
            + +GR+ +    ++       +L++     +++                 + + L +  
Sbjct: 65  PETQGRFRLLGDVQKKN----CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEV 120

Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQV----GGEPSPKVEWYKDGKLIKDRQITSEKN 286
               +   +  L  +    G    LS  +       P     W  +     D + T    
Sbjct: 121 TALIEKPDIHFLEPL--ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--- 175

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEG--TVESAANLNV 322
           +  LTL           + ++  +    T E    LNV
Sbjct: 176 SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 410 NVVELPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGK 468
           + V+         Q+V V     A     +    +  ++W    ++  + ++     D +
Sbjct: 1   SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60

Query: 469 KQ---------KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
            +          + +    L D G+Y+C +     K SKA LTV   
Sbjct: 61  IELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGV 107

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 334 DDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIR---------KL 383
            ++ V E   A+L   V  +D   ++W    Q+          +   I           +
Sbjct: 14  QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI 73

Query: 384 LIRNISVHDEGEYTCSL---PDQETSAELNVVELP 415
            + ++S+ DEG+YTCSL   P + + A L V+ +P
Sbjct: 74  SVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQIT---SEKNTHTLT 169
           +V++ EG +A+L+ +V    +  ++W    +           +D +I    +  +  +++
Sbjct: 15  NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           +   S  D+G+Y+  +        S A L V
Sbjct: 75  VSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQIT---SEKNTHTLT 291
           +V++ EG +A+L+ +V    +  ++W    +           +D +I    +  +  +++
Sbjct: 15  NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           +   S  D+G+Y+  +        S A L V
Sbjct: 75  VSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 10/139 (7%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ-ETSA-----ELNVV 412
             K+G       +  +E      +  I +++ H  G Y C        S      EL V 
Sbjct: 37  LVKEGSPEPWDTQNPLEP-KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVT 95

Query: 413 ELPPEISVPLQ-DVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQ 470
               + ++       V+  E  + +             ++G     ++ +  L+  G+ Q
Sbjct: 96  GFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ 155

Query: 471 -KLIIFSAGLEDAGEYSCR 488
               +            C 
Sbjct: 156 ALFPVGPVTPSHRWMLRCY 174

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 24/107 (22%)

Query: 330 IKKLDDLEVKERENAVLEVEVTSDKAD---VKWFKDGQEIKT-------------SKKVT 373
           I+   ++  ++  + +L+  ++S  A    V W +  Q +                 +V 
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 374 IEKKGTIRKLLIRNISVHDEGEYTCSL---PD--QETSAELNVVELP 415
                 +    +++++V+D GEY C     PD        L V+E  
Sbjct: 67  PGPGLGLT---LQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 106/685 (15%), Positives = 204/685 (29%), Gaps = 237/685 (34%)

Query: 150 DGKLIKD--RQITSEKN-----------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAA 196
           D K ++D  + I S++            + TL L       K    V+       VE   
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKF-----VEEVL 87

Query: 197 NLN----VDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP---SILEPLHDVSITE 249
            +N    + P +  E ++       Y+  + D L  N  +       S L+P   +    
Sbjct: 88  RINYKFLMSPIK-TEQRQPSMMTRMYI-EQRDRLY-NDNQVFAKYNVSRLQPYLKL---- 140

Query: 250 GESAVLSVQVGGEPSPKVEWYKD---GK--LI------KDRQITSEKNTHTLTLIQCSTK 298
              A+L ++    P+  V        GK  +          Q   +     L L  C++ 
Sbjct: 141 -RQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 299 D------KGRYSVKVTNKEGTVESAAN--LNVDQGKAEFIKKLDDLEVKERENA--VLEV 348
           +      +        N     + ++N  L +   +AE +++L  L+ K  EN   VL  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LRRL--LKSKPYENCLLVLL- 251

Query: 349 EVTSDKADVKWFKDGQEIKTSKK-VTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSA 407
            V  +      F +       K  +T   K     L     +      ++ +L   E  +
Sbjct: 252 NV-QNAKAWNAF-NLS----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 408 ------ELNVVELPPEISV--PLQDVKVS------RDEKASFEIELTKGDALVKWYKDGK 453
                 +    +LP E+    P    ++S      RD  A+++           W     
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATWD----------NWKHVNC 352

Query: 454 EIAFSENVTLSIDG------KK--QKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
           +   +  +  S++       +K   +L +F                              
Sbjct: 353 D-KLTTIIESSLNVLEPAEYRKMFDRLSVFP---PS------------------------ 384

Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
                   +P++ L                   + W ++                 I+  
Sbjct: 385 ------AHIPTILL------------------SLIWFDV-----------------IKSD 403

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
               V +     L          S+V  +  K    S     I     I LELK      
Sbjct: 404 VMVVVNK-----LHKY-------SLV-EKQPKESTIS-----IPS---IYLELKVKLENE 442

Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDR---NHV-HHLDNIDSPRQS 681
            A    +V    +         T D + +  P +     D+   +H+ HHL NI+ P + 
Sbjct: 443 YALHRSIVDHYNI-------PKTFDSDDLIPPYL-----DQYFYSHIGHHLKNIEHPERM 490

Query: 682 TEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK-IEVRFKALPPPKAEWTVNGTVIVPSKR 740
           T                     V +    D + +E + +        W  +G+++   ++
Sbjct: 491 TLF-----------------RMVFL----DFRFLEQKIRHDSTA---WNASGSILNTLQQ 526

Query: 741 VKGKAEFIKKLDDLEVKERENAVLE 765
           +K    +I   +D + +   NA+L+
Sbjct: 527 LKFYKPYICD-NDPKYERLVNAILD 550

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 10/173 (5%)

Query: 12  PPTFSKKTKPVYAEENSEVTL--EVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
            P  S K+ PV   + S V +  +    A     L+   N    +    + F +++D   
Sbjct: 9   MPFISAKSSPVIPLDGS-VKIQCQAIREA-YLTQLMIIKNSTYREIGRRLKFWNETD--- 63

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
                 I  +   + G Y    +      +    +++          L     + +  GE
Sbjct: 64  --PEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGE 121

Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
           +  L+      P  +    K+G+L    Q  S ++    +L        G Y 
Sbjct: 122 NISLTCSSAHIPFDRFSLAKEGEL-SLPQHQSGEHPANFSLGPVDLNVSGIYR 173

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 29/203 (14%), Positives = 52/203 (25%), Gaps = 35/203 (17%)

Query: 106 VNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK-DRQITSE 162
              G    P I  +      I    S  +  Q   E    ++   K+    +  R++   
Sbjct: 2   AQEGDFPMPFISAKS--SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFW 59

Query: 163 -KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
            +      +        GRY  +                             S       
Sbjct: 60  NETDPEFVIDHMDANKAGRYQCQYRIGHYRFR-------------------YS------- 93

Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI 281
             DTL++          L     + +  GE+  L+      P  +    K+G+L    Q 
Sbjct: 94  --DTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGEL-SLPQH 150

Query: 282 TSEKNTHTLTLIQCSTKDKGRYS 304
            S ++    +L        G Y 
Sbjct: 151 QSGEHPANFSLGPVDLNVSGIYR 173

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 16/140 (11%), Positives = 39/140 (27%), Gaps = 17/140 (12%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--------SLPDQETSAELN 410
             K+    +  +++    +      +I ++  +  G Y C                  + 
Sbjct: 43  IIKNSTYREIGRRLKFWNETDPE-FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVT 101

Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKK 469
            +   P +S   + + +   E  S                K+G+      ++     G+ 
Sbjct: 102 GLYGKPFLSAD-RGLVLMPGENISLTCSSAHIPFDRFSLAKEGE-----LSLPQHQSGEH 155

Query: 470 Q-KLIIFSAGLEDAGEYSCR 488
                +    L  +G Y C 
Sbjct: 156 PANFSLGPVDLNVSGIYRCY 175

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 11/139 (7%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ----ETSAELNVV-- 412
             K+       ++  +E      +  I +++    G Y C         + S  L +V  
Sbjct: 37  LDKEESPAPWDRQNPLEP-KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMT 95

Query: 413 --ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
                P +S  L    V+  +  +   +           K+          +     + Q
Sbjct: 96  GAYSKPTLSA-LPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQ 154

Query: 471 -KLIIFSAGLEDAGEYSCR 488
            +  +        G Y C 
Sbjct: 155 AEFPMSPVTSVHGGTYRCF 173

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 13/141 (9%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS--LPDQETSAELNVVEL-- 414
            +++ +      +   ++     +  I +I+    G Y C         S   + +EL  
Sbjct: 37  LYREKKTAPWITR-IPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVV 95

Query: 415 -----PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSE-NVTLSIDGK 468
                 P +S       V+     + + +           K+G++      N      G 
Sbjct: 96  TGAYIKPTLSA-QPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGS 154

Query: 469 KQ-KLIIFSAGLEDAGEYSCR 488
            +    +          Y C 
Sbjct: 155 SRAIFSVGPVSPSRRWWYRCY 175

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 14/138 (10%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-LPDQETSA-----ELNVV 412
              +G  +    +    ++    K  I +++    G+Y+C     +  S      +L V 
Sbjct: 36  LHFEG-SLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 94

Query: 413 ELPPEISVPLQ-DVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ- 470
           E+    ++ +    +V   EK +F   L    ++    K+G+             GK Q 
Sbjct: 95  EMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQ-----RGYGKVQA 149

Query: 471 KLIIFSAGLEDAGEYSCR 488
           +  +        G Y C 
Sbjct: 150 EFPLGPVTTAHRGTYRCF 167

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 3/58 (5%)

Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
                L   + S  A   W       ++ +            L I N++    G Y C
Sbjct: 515 NSRYYLSCPMESRHATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFC 569

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 16/143 (11%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIR-KLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
             ++G    T + +     G  +    I  ++    G Y C    +    + SA  + ++
Sbjct: 40  LHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLD 99

Query: 414 L-------PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
           +        P +S       V   E  +          +    ++G+           ++
Sbjct: 100 IVIIGLYEKPSLSAQ-PGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVN 158

Query: 467 GKKQKLIIFSAG-LEDAGEYSCR 488
           G  Q    F  G     G Y C 
Sbjct: 159 GTFQAD--FPLGPATHGGTYRCF 179

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 13/115 (11%)

Query: 382 KLLIRNISVHDEGEYTCS-LPDQETSAELNVVEL-------PPEISVPLQDVKVSRDEKA 433
            L I  +     G Y CS       S   + +EL        P +S       VS     
Sbjct: 53  VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSA-QPGPAVSSGGDV 111

Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
           + + +   G      YK+G    +           +    I +     +G Y C 
Sbjct: 112 TLQCQTRYGFDQFALYKEGDPAPYKN----PERWYRASFPIITVTAAHSGTYRCY 162

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 383 LLIRNISVHDEGEYTCSL---PDQETSAELNVVELPP 416
           + I N+++ DEGEYTCS+   P +   + + V+ +P 
Sbjct: 105 ISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQ 141

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 405 TSAELNVVELPPEISVPL-QDV----KVSRDEKASF-EIELTKGDA--LVKWYKDGKEIA 456
            S +  V+     I   +  +     ++S  + A+  E+   +     +V  Y++GK+  
Sbjct: 3   GSGQFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQD 62

Query: 457 ------FSENVTLSIDGKKQ---KLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAP 506
                 +     L  +   +    L I +    D G Y+C   D +  +E+   L VE P
Sbjct: 63  AEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVEL 414
              +G  +    +    ++    K  I +++    G+Y+C         E S  L++V  
Sbjct: 39  LHFEGS-LFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 97

Query: 415 ----PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
                P +SV     +V   EK +F   L    ++    K+G+             GK Q
Sbjct: 98  EMYDTPTLSV-HPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQ-----RGYGKVQ 151

Query: 471 -KLIIFSAGLEDAGEYSCR 488
            +  +        G Y C 
Sbjct: 152 AEFPLGPVTTAHRGTYRCF 170

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 42.8 bits (99), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
              A L+    S+ A V W      +K             + LLI N+S  D G Y C
Sbjct: 548 GGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLM--GRKNLLIFNLSEGDSGVYQC 603

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 22/93 (23%)

Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK-------------------LII 474
           S+ +  +     + W K     +   N  L  D +                      LII
Sbjct: 17  SYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLII 76

Query: 475 FSAGLEDAGEYSCRV---GDTGDKESKATLTVE 504
            +  L+D G Y CR+   G   DK+ +  L ++
Sbjct: 77  KNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ... Length = 211

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 214 SPPPYVVSELDTLQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYK 271
                +      L V       PS+ L P     +   ++ ++ +     P    V W  
Sbjct: 90  GNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKA 149

Query: 272 DGKLIKDRQITS----EKNTH-----TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
           D   +K    T+    + N        L+L     K    YS +VT++  TVE
Sbjct: 150 DSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 202

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 449 YKDGKEIAFSENVTLSIDGKKQK----LIIFSAGLEDAGEYSCRV---GDTGDKESKATL 501
           + +G  + + ++   ++ G   +    L I ++   D+G Y CRV   G   D++   +L
Sbjct: 48  WTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSL 107

Query: 502 TVEAPAV 508
            V+   V
Sbjct: 108 QVKPELV 114

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 16/143 (11%)

Query: 359 WFKDGQEIKTSKKVTIEKKGTIR-KLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
             ++G+   T   +     G  +    I  +     G Y C    +    + SA  + ++
Sbjct: 39  LHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLD 98

Query: 414 L-------PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
           +        P +S       V   E  +          +    ++G+      +    ++
Sbjct: 99  IVITGLYEKPSLSAQ-PGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVN 157

Query: 467 GKKQKLIIFSAG-LEDAGEYSCR 488
           G  Q    F  G     G Y C 
Sbjct: 158 GTFQAD--FPLGPATHGGTYRCF 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	785
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.98
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.98
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.96
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.94
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.93
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.93
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.93
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.92
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.92
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.92
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.92
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.92
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.92
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.91
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.91
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.91
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.91
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.9
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.9
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.9
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.9
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.9
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.9
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.9
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.9
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.89
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.89
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.89
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.89
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.88
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.88
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.87
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.87
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.87
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.87
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.87
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.87
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.87
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.86
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.86
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.86
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.86
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.86
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.86
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.86
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.86
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.86
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.85
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.85
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.85
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.85
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.85
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.85
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.85
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.85
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.84
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.84
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.84
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.84
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.84
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.84
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.84
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.84
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.84
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.84
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.83
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.83
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.83
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.82
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.82
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.82
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.82
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.82
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.82
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.82
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.82
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.82
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.82
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.81
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.81
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.81
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.81
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.81
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.81
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.81
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.81
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.81
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.81
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.81
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.81
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.8
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.8
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.8
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.8
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.8
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.8
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.8
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.8
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.8
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.8
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.79
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.79
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.79
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.79
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.79
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.79
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.79
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.79
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.79
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.79
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.78
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.78
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.78
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.78
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.78
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.78
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.78
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.78
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.78
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.78
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.78
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.78
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.78
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.78
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.77
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.77
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.77
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.77
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.77
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.77
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.77
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.77
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.77
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.77
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.77
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.77
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.77
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.77
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.77
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.77
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.77
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.76
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.76
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.76
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.76
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.76
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.76
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.76
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.76
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.76
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.76
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.76
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.76
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.76
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.76
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.76
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.76
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.75
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.75
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.75
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.75
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.75
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.75
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.75
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.74
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.74
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.74
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.74
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.74
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.74
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.74
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.74
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.74
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.74
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.74
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.74
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.74
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.74
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.73
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.73
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.73
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.73
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.73
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.73
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.73
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.72
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.72
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.72
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.72
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.72
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.72
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.72
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.72
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.72
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.72
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.72
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.72
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.71
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.71
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.71
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.71
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.71
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.71
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.71
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.71
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.71
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.71
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.71
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.71
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.7
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.7
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.7
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.7
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.7
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.7
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.7
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.7
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.69
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.69
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.69
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.69
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.69
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.69
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.69
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.69
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.68
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.68
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.68
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.68
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.67
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.67
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.67
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.67
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.66
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.66
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.66
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.65
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.65
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.65
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.64
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.64
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.64
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.64
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.64
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.64
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.64
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.64
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.64
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.63
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.63
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.63
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.63
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.63
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.63
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.62
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.62
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.62
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.62
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.62
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.61
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.61
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.61
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.6
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.6
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.6
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.6
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.6
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.6
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.6
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.6
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.59
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.59
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.59
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.59
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.58
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.58
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.57
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.57
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.57
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.57
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.56
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.56
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.56
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.56
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.56
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.56
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.56
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.56
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.55
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.55
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.55
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.55
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.55
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.54
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.54
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.54
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.54
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.54
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.54
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.54
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.54
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.54
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.53
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.53
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.53
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.52
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.52
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.52
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.52
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.52
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.51
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.51
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.51
1he7_A	126	High affinity nerve growth factor receptor; transf	99.51
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.51
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.51
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.51
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.51
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.5
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.5
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.5
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.5
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.5
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.5
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.5
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.49
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.49
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.49
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.49
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.49
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.49
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.49
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.48
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.48
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.48
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.48
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.47
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.47
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.46
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.46
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.46
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.46
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.46
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.46
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.46
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.45
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.45
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.45
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.45
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.45
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.44
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.44
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.44
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.43
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.43
1he7_A	126	High affinity nerve growth factor receptor; transf	99.43
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.43
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.42
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.41
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.41
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.41
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.4
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.4
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.4
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.4
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.4
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.4
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.39
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.39
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.39
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.39
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.39
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.38

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=9.9e-74  Score=639.87  Aligned_cols=552  Identities=26%  Similarity=0.438  Sum_probs=472.1

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|..++..+.+.+|++++|.|.+.|.|.+.|.|+|++..+....++.+...++    ..+|.|.+++.+|+|.|+|
T Consensus         3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C   78 (570)
T 3b43_A            3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNN----VASLVINKVDHSDVGEYTC   78 (570)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTT----EEEEEESSCCGGGCEEEEE
T ss_pred             CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECC----EEEEEEccCChhhCEEEEE
Confidence            469999999999999999999999999999999999999999998777776654433    2569999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce---EEEeCCEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTH  166 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~~~~~  166 (785)
                      .|.|..|.......+.|.. ...+|.+...+.......|+.+.|.|.+.|.|++.|+|+|||..+....   ........
T Consensus        79 ~a~N~~g~~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~  157 (570)
T 3b43_A           79 KAENSVGAVASSAVLVIKE-RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA  157 (570)
T ss_dssp             EEEETTEEEEEEEEEEECC-CCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEE
T ss_pred             EEEeCCceEEEEEEEEECC-CCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEE
Confidence            9999999887777777653 3356778777788888999999999999999999999999999987542   23345567


Q ss_pred             EEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcce
Q psy2775         167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS  246 (785)
Q Consensus       167 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  246 (785)
                      +|.|.++..+|+|.|+|.|.|..|....++.|.|....                             .+|.+...+....
T Consensus       158 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~-----------------------------~pp~~~~~p~~~~  208 (570)
T 3b43_A          158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE-----------------------------VPPFFDLKPVSVD  208 (570)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----------------------------CCCEEEECCCCBC
T ss_pred             EEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCC-----------------------------CCCccccCCceeE
Confidence            89999999999999999999999998888888886432                             4466766677778


Q ss_pred             eCCCCeEEEEEEEccCCCCeEEEEECCEEcc---cceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEEe
Q psy2775         247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  323 (785)
Q Consensus       247 ~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~  323 (785)
                      +.+|+.+.|.|.+.|.|++.++|+++|..+.   ...+........|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       209 v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  288 (570)
T 3b43_A          209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ  288 (570)
T ss_dssp             CBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             ecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEee
Confidence            8899999999999999999999999999886   2344555667899999999999999999999999998888999988


Q ss_pred             ccccceeeec-cceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEe
Q psy2775         324 QGKAEFIKKL-DDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP  401 (785)
Q Consensus       324 ~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  401 (785)
                      .+ |.+.... ....+.+|+.+.|.|.+.+ |.+.++|+++|..+..+.++.+...+....|.|.++..+|+|.|+|.|.
T Consensus       289 ~~-p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~  367 (570)
T 3b43_A          289 EP-PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH  367 (570)
T ss_dssp             CC-CEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             cC-CcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEE
Confidence            64 4444333 3456789999999999988 7889999999999988887777666666779999999999999999999


Q ss_pred             ccceEE----EEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEcc
Q psy2775         402 DQETSA----ELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS  476 (785)
Q Consensus       402 n~~~~~----~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~  476 (785)
                      |..+..    .+.| ..||.+...+....+.+|+.+.|.|.+.+ |.|.+.|+|++..+..+.++.+..++....|.|.+
T Consensus       368 N~~g~~~~~~~l~V-~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~  446 (570)
T 3b43_A          368 NAAGSASSSTSLKV-KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN  446 (570)
T ss_dssp             BTTBCCEEEEEECE-ECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECS
T ss_pred             eCCCEEEEEEEEEe-cCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECC
Confidence            976533    3334 35777777778888899999999999998 78899999999999888888888888888999999


Q ss_pred             CCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         477 AGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      +..+|+|.|+|.|.|. |.....+.|.|..+                                                 
T Consensus       447 v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~-------------------------------------------------  477 (570)
T 3b43_A          447 VDSADIGEYQCKASNDVGSDTCVGSITLKAP-------------------------------------------------  477 (570)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEECCC-------------------------------------------------
T ss_pred             CChhhCEEEEEEEEECCCeEEEEEEEEeccC-------------------------------------------------
Confidence            9999999999999998 88888888888765                                                 


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEec-CCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL-SSPKKREIFDGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~-~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                         |.|...+.+..+.+|++++|.|.+.|.|+|.|.|+|++..+. .+.+..+...+...+|.|.++.. +|+|.|+|.|
T Consensus       478 ---P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a  553 (570)
T 3b43_A          478 ---PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP-ANAGKYTCQI  553 (570)
T ss_dssp             ---CEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCT-TCCEEEEEEE
T ss_pred             ---CcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCH-HHCEEEEEEE
Confidence               666767778889999999999999999999999999986654 44555555667788999999999 9999999999


Q ss_pred             EcCCcceEEEEEEEEE
Q psy2775         635 TNELGSATHGARVTVD  650 (785)
Q Consensus       635 ~n~~g~~~~~~~l~V~  650 (785)
                      .|..|.+..++.|.|.
T Consensus       554 ~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          554 KNEAGTQECFATLSVL  569 (570)
T ss_dssp             ECSSCEEEEEEEECCB
T ss_pred             EECCcEEEEEEEEEEe
Confidence            9999999999999874

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=7.4e-70  Score=608.56  Aligned_cols=542  Identities=24%  Similarity=0.422  Sum_probs=451.1

Q ss_pred             CCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEEEeCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       111 ~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                      ..||.|..++..+.+.+|+.+.|.|.+.|.|.+.|+|+|||..+...   .+.......+|.|.++..+|+|.|+|.|.|
T Consensus         3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (570)
T 3b43_A            3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN   82 (570)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence            36889999999999999999999999999999999999999988643   233445678999999999999999999999


Q ss_pred             CCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeE
Q psy2775         188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKV  267 (785)
Q Consensus       188 ~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v  267 (785)
                      ..|.......+.|....                             .+|.+...+......+|+.+.|.|.+.|.|++.+
T Consensus        83 ~~g~~~~~~~l~v~~~~-----------------------------~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v  133 (570)
T 3b43_A           83 SVGAVASSAVLVIKERK-----------------------------LPPSFARKLKDVHETLGFPVAFECRINGSEPLQV  133 (570)
T ss_dssp             TTEEEEEEEEEEECCCC-----------------------------CCCEESSCCCCEEEETTSCEEEEEEEESSSSCEE
T ss_pred             CCceEEEEEEEEECCCC-----------------------------CCCcccccCCCeEecCCCeEEEEEEEccCCCCEE
Confidence            99988888888776432                             3466666667777889999999999999999999


Q ss_pred             EEEECCEEccc---ceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEEec--cccceeeeccceeEeeCc
Q psy2775         268 EWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ--GKAEFIKKLDDLEVKERE  342 (785)
Q Consensus       268 ~W~~~~~~l~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~  342 (785)
                      +|+++|..+..   ..........+|.|.++..+|+|.|+|.|.|..|....++.|.|..  .++.+...+....+.+|+
T Consensus       134 ~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~  213 (570)
T 3b43_A          134 SWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGE  213 (570)
T ss_dssp             EEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBS
T ss_pred             EEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCC
Confidence            99999998872   2233455678999999999999999999999999888888888764  355565566677788999


Q ss_pred             cEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccceEEEEEE---EecCCcc
Q psy2775         343 NAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV---VELPPEI  418 (785)
Q Consensus       343 ~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~v---~~~~~~~  418 (785)
                      .+.|.|.+.+ |++.++|+++|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..+.....+   +..+|.+
T Consensus       214 ~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  293 (570)
T 3b43_A          214 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF  293 (570)
T ss_dssp             CEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEE
T ss_pred             eEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcc
Confidence            9999999988 67899999999999887777766666666799999999999999999999776554332   2335555


Q ss_pred             cccC-CCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-Ccc
Q psy2775         419 SVPL-QDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDK  495 (785)
Q Consensus       419 ~~~~-~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~  495 (785)
                      ...+ ....+.+|+.+.|.|.+.+ |.+.+.|+|++..+..+.++.+...+....|.|.+++.+|+|.|+|.|.|. |..
T Consensus       294 ~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  373 (570)
T 3b43_A          294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA  373 (570)
T ss_dssp             EECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCC
T ss_pred             cccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEE
Confidence            4433 3345789999999999998 788999999999998888888877777889999999999999999999998 888


Q ss_pred             eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCe
Q psy2775         496 ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGT  575 (785)
Q Consensus       496 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~  575 (785)
                      ..++.|.|..+                                                    |.|...+.+..+.+|+.
T Consensus       374 ~~~~~l~V~~~----------------------------------------------------P~~~~~~~~~~~~~G~~  401 (570)
T 3b43_A          374 SSSTSLKVKEP----------------------------------------------------PVFRKKPHPVETLKGAD  401 (570)
T ss_dssp             EEEEEECEECC----------------------------------------------------CEECSCCCCEEECTTCC
T ss_pred             EEEEEEEecCC----------------------------------------------------CeeecCCCceeecCCCE
Confidence            88899999876                                                    44444445667889999


Q ss_pred             EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccC
Q psy2775         576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG  655 (785)
Q Consensus       576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  655 (785)
                      ++|.|.+.|.|.|.|+|+|+|.++..+.++.+..++...+|.|.++.. +|+|.|+|.|.|..|....++.|.|.     
T Consensus       402 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v~-----  475 (570)
T 3b43_A          402 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS-ADIGEYQCKASNDVGSDTCVGSITLK-----  475 (570)
T ss_dssp             EEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEECSSCEEEEEEEEEEC-----
T ss_pred             EEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh-hhCEEEEEEEEECCCeEEEEEEEEec-----
Confidence            999999999999999999999999888888888888888999999999 99999999999999999988888876     


Q ss_pred             CCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCCceEEeECCEEe
Q psy2775         656 RPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI  735 (785)
Q Consensus       656 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~~~~~  735 (785)
                                                          .+|.+.. ......+..|+.+.|.|.+.|.|+|.|+|+|+|..+
T Consensus       476 ------------------------------------~~P~~~~-~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~  518 (570)
T 3b43_A          476 ------------------------------------APPRFVK-KLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI  518 (570)
T ss_dssp             ------------------------------------CCCEEEE-CCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEEC
T ss_pred             ------------------------------------cCCcccc-cCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEe
Confidence                                                4565543 334556889999999999999999999999998665


Q ss_pred             e-eccccccch-hhhcccccceeeeeeceEEEEEEecccceeE
Q psy2775         736 V-PSKRVKGKA-EFIKKLDDLEVKERENAVLEVEVTSDKADVK  776 (785)
Q Consensus       736 ~-~~~~~~~~~-~~~~~l~~~~v~~~~~~~~~c~~~~~~~~~~  776 (785)
                      . .+.++.+.. .-...|.+..+...|+|.|+|.+.+..+..+
T Consensus       519 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  561 (570)
T 3b43_A          519 VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE  561 (570)
T ss_dssp             CCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEE
T ss_pred             ccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEE
Confidence            4 444544432 2234788889999999999999998655443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=2.1e-67  Score=599.85  Aligned_cols=597  Identities=18%  Similarity=0.295  Sum_probs=450.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEE-Eeec-----------CCcc-ceEEEEEEcccCC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV-FSDQ-----------SDMH-SYVSIVTIKSIKK   81 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-~~~~-----------~~~~-~~~~~L~i~~~~~   81 (785)
                      |+.+|.++.+.+|++++|.|...+.+.+.|.|++++. ......+. +..+           +... ....+|+|.+++.
T Consensus         2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~-~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v~~   80 (642)
T 1e07_A            2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGER-VDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQ   80 (642)
T ss_pred             ceEeccCCcccccccEEEEEccCCCCceEEEEECCcc-cCCcceEEEEEccccccccCccccCceeeccCCcEEECCCCc
Confidence            5677889999999999999997666677899998543 22111111 0000           0000 0113699999999


Q ss_pred             CCCeEEEEEEEcCC-eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc-eE
Q psy2775          82 REEGVYTVVAKNRE-GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QI  159 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~-~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-~~  159 (785)
                      +|+|.|+|.+.+.. +.....+.|.|.. .+.+|.+... ....+..|+.+.|.|.+.+ |.+.++|++||..+... ..
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~  157 (642)
T 1e07_A           81 NDTGFYTLHVIKSDLVNEEATGQFRVYP-ELPKPSISSN-NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRL  157 (642)
T ss_pred             ccCcEEEEEEEcCCCeEEEEEEEEEecc-cCCCCcEEcc-CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCce
Confidence            99999999999864 4445566677753 2335555543 3456788999999999988 88999999999988754 23


Q ss_pred             EEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeE-EEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCee
Q psy2775         160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV-ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI  238 (785)
Q Consensus       160 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  238 (785)
                      ........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+                             ..|.+
T Consensus       158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p-----------------------------~~~~~  208 (642)
T 1e07_A          158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGP-----------------------------DAPTI  208 (642)
T ss_pred             EEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCC-----------------------------CCcEE
Confidence            333345689999999999999999999988754 345777776432                             11222


Q ss_pred             eecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEE-
Q psy2775         239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-  317 (785)
Q Consensus       239 ~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~-  317 (785)
                        .+....+.+|+.+.|.|.+.|+|.+.+.|+++|..+.        ....|.|.++..+|+|.|+|.|.|..|....+ 
T Consensus       209 --~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~  278 (642)
T 1e07_A          209 --SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ--------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTT  278 (642)
T ss_pred             --ecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcc--------cCCceEEecccccCCeEEEEEEEeCCCceEEee
Confidence              2345567899999999999999999999999998874        23479999999999999999999998866544 


Q ss_pred             -EEEEEeccccceeee-ccceeEeeCccEEEEEEEcCCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceE
Q psy2775         318 -ANLNVDQGKAEFIKK-LDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGE  395 (785)
Q Consensus       318 -~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~  395 (785)
                       +.|.|...++..... .....+..|+.+.|.|.+.+.++.++|+++|..+....++.+...+.  .|.|.++..+|+|.
T Consensus       279 ~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~  356 (642)
T 1e07_A          279 VTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGP  356 (642)
T ss_pred             eEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCC--EEEEeccCcccCee
Confidence             556666543332222 23344556788999999998778999999999988777776655443  49999999999999


Q ss_pred             EEEEEeccceE-----EEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcE
Q psy2775         396 YTCSLPDQETS-----AELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKK  469 (785)
Q Consensus       396 Y~C~a~n~~~~-----~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~  469 (785)
                      |+|.|.|..+.     ..+.|...|+.+...+....+.+|+.++|.|.+.+ |.+.+.|+++|..+...           
T Consensus       357 Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~-----------  425 (642)
T 1e07_A          357 YECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-----------  425 (642)
T ss_pred             EEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC-----------
Confidence            99999986543     45566665655555666778889999999999988 78899999999887532           


Q ss_pred             EEEEEccCCCCCcEEEEEEEeec-CcceeEEEEE--EEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccc
Q psy2775         470 QKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLT--VEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI  546 (785)
Q Consensus       470 ~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  546 (785)
                      ..|.|.++..+|+|.|+|.|.|. |....+..+.  |..++.                                      
T Consensus       426 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~--------------------------------------  467 (642)
T 1e07_A          426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP--------------------------------------  467 (642)
T ss_pred             ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCC--------------------------------------
Confidence            36999999999999999999997 6666554444  443210                                      


Q ss_pred             ccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       547 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                                 +|.+.. .....+.+|++++|.|.+.+ |.+.+.|+|+|..+..+.++.+..  +..+|.|.++.. +|
T Consensus       468 -----------~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~--~~~~L~i~~v~~-~d  531 (642)
T 1e07_A          468 -----------KPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSN--GNRTLTLFNVTR-ND  531 (642)
T ss_pred             -----------CceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcC--CCcEEEEeecCh-hc
Confidence                       122222 23557889999999999995 888999999999998776654433  345799999999 99


Q ss_pred             ceeEEEEEEcCCcceEE-EEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEE
Q psy2775         627 AGDYKVVATNELGSATH-GARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL  705 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~  705 (785)
                      +|.|+|.|.|..|...+ .+.|.|.                                         .+|......+....
T Consensus       532 ~G~Y~C~a~n~~g~~~s~~~~l~V~-----------------------------------------~~p~~~~~~~~~~~  570 (642)
T 1e07_A          532 ARAYVCGIQNSVSANRSDPVTLDVL-----------------------------------------YGPDTPIISPPDSS  570 (642)
T ss_pred             CceEEEEeEcCCCCccCCCEEEEEE-----------------------------------------eCCCcceecCCcee
Confidence            99999999999997654 5777776                                         22221112334567


Q ss_pred             eecCCeEEEEEEEecCCCCceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEEEEEeccc
Q psy2775         706 VKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       706 ~~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~~~  772 (785)
                      +..|+.++|.|.+.|.|+|.|+|++||..+..+          ..|.+..+...|+|.|+|.+.+..
T Consensus       571 v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~----------~~L~i~~~~~~d~G~Y~C~a~N~~  627 (642)
T 1e07_A          571 YLSGANLNLSCHSASNPSPQYSWRINGIPQQHT----------QVLFIAKITPNNNGTYACFVSNLA  627 (642)
T ss_pred             EEcCCcEEEEEEeccCCCCeEEEEECCEECccC----------ceEEECcccccCCeEEEEEEEecc
Confidence            889999999999999999999999999998754          257788889999999999998743

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=7.2e-68  Score=621.02  Aligned_cols=661  Identities=18%  Similarity=0.260  Sum_probs=496.5

Q ss_pred             CCCCeeeecCCc-eEecCCCeEEEEEEEEecCCCeeEEEE-CCEEccCCCCEEEeecCCccceEEEEEEcccCCCC----
Q psy2775          10 GIPPTFSKKTKP-VYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE----   83 (785)
Q Consensus        10 ~~~p~~~~~~~~-~~v~~G~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D----   83 (785)
                      ..+|.|..+|.. +.+.+|++++|.|.+.|.|.+.|.|++ +|..+....+......+      .+|.|.+++.+|    
T Consensus        36 ~~~P~~~~~p~~~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~~~~~~~~~~~------g~l~i~~~~~~~~~~~  109 (816)
T 3dmk_A           36 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD------GKLVFPPFRAEDYRQE  109 (816)
T ss_dssp             CEEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECST------TEEEECCCCGGGCCHH
T ss_pred             cCCCcEEeCCCCeEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccCCCceEEEeeC------CcEEEcCCChHHcccc
Confidence            346999988876 679999999999999999999999999 78777644332222222      249999998887    


Q ss_pred             --CeEEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccC-C--CeEEEeECCEEcc--
Q psy2775          84 --EGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP-S--PKVEWYKDGKLIK--  155 (785)
Q Consensus        84 --~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-~--~~v~W~~~g~~~~--  155 (785)
                        +|.|+|.|.|..|.. +..+.|.+.    ..+.+...+....+.+|+.+.|.|.+.+.+ .  +.+.|++++..+.  
T Consensus       110 ~d~G~Y~C~a~n~~G~~~S~~~~v~~~----~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~  185 (816)
T 3dmk_A          110 VHAQVYACLARNQFGSIISRDVHVRAV----VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP  185 (816)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEEEEEEE----CCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECB
T ss_pred             ccceEEEEEEecCcceEEccceEEEEE----EccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEecc
Confidence              999999999999976 555666654    234445555677899999999999986543 2  6899999876542  


Q ss_pred             ----cceEEEeCCEEEEEEcccCCCCc-EEEEEEEEcCCee-EEE---EEEEEeecCCCCCCCCCCCCCCCcccccccee
Q psy2775         156 ----DRQITSEKNTHTLTLIQCSTKDK-GRYSVKVTNKEGT-VES---AANLNVDPYEPKESKETPPSPPPYVVSELDTL  226 (785)
Q Consensus       156 ----~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~-~~~---~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (785)
                          ...... ....+|.|.+++.+|+ |.|+|.|.|..+. ...   ...+.|....                      
T Consensus       186 ~~~~~~r~~~-~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~----------------------  242 (816)
T 3dmk_A          186 GAEYDGKYLV-LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPI----------------------  242 (816)
T ss_dssp             SSCBTTTEEE-CTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCC----------------------
T ss_pred             ccCCCceEEE-ecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCC----------------------
Confidence                112222 2233799999999998 9999999975532 221   1345554211                      


Q ss_pred             eecCCCCCCCeeeecC--CcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc-------cceEEEeCCEEEEEEccCCC
Q psy2775         227 QVNTGKPEKPSILEPL--HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-------DRQITSEKNTHTLTLIQCST  297 (785)
Q Consensus       227 ~~~~~~~~~p~~~~~~--~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~-------~~~~~~~~~~~~l~i~~~~~  297 (785)
                           ...+|.+....  ....+..|+.+.|.|.+.|.|.+.+.|+|++....       .......  ..+|.|.++..
T Consensus       243 -----~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~  315 (816)
T 3dmk_A          243 -----SSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVV  315 (816)
T ss_dssp             -----SCCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEE--TTEEEECSCCG
T ss_pred             -----CCCCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceEec--cceEEECCCCH
Confidence                 00234443321  34577899999999999999999999999543221       1112222  23899999999


Q ss_pred             CCCeEEEEEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEE
Q psy2775         298 KDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEK  376 (785)
Q Consensus       298 ~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~  376 (785)
                      +|+|.|+|.|.|..|.....+.|.|.. ++.+...+....+.+|+.+.|.|.+.+ |.+.++|+++|..+.....     
T Consensus       316 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~-~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~-----  389 (816)
T 3dmk_A          316 EDSGKYLCVVNNSVGGESVETVLTVTA-PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES-----  389 (816)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEECE-EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS-----
T ss_pred             hHCEEEEEEEEcCCCceEEEEEEEEcC-CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCC-----
Confidence            999999999999999888888888875 444555566778899999999999987 7889999999998865421     


Q ss_pred             cCcEEEEEEcCCCCCCceEEEEEEeccceEEEE----EEE--ecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEE
Q psy2775         377 KGTIRKLLIRNISVHDEGEYTCSLPDQETSAEL----NVV--ELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWY  449 (785)
Q Consensus       377 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~----~v~--~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~  449 (785)
                           .|.|.++..+|+|.|+|.|.|..+....    .+.  ..||.+...+....+.+|+.+.|.|.+.+ +.+.+.|+
T Consensus       390 -----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~  464 (816)
T 3dmk_A          390 -----VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE  464 (816)
T ss_dssp             -----EEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEE
T ss_pred             -----EEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEE
Confidence                 3999999999999999999997665432    232  35677777777788999999999999998 78899999


Q ss_pred             ECCEEcccCCCEEEEE-----eCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEecc
Q psy2775         450 KDGKEIAFSENVTLSI-----DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHL  523 (785)
Q Consensus       450 ~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~  523 (785)
                      ++|..+....++....     ....+.|.|.++..+|+|.|+|.|.|. |....++.|.|..+|.  +...+. ..+..+
T Consensus       465 ~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~--~~~~~~-~~v~~G  541 (816)
T 3dmk_A          465 LDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY--IRQMEK-KAIVAG  541 (816)
T ss_dssp             ETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCE--ECCCCC-EEEETT
T ss_pred             ECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCe--eEccCC-eEEecC
Confidence            9999998777665532     123567999999999999999999998 8888899999988763  333333 455688


Q ss_pred             CceeEEEEecC-CceeeEEeecccc----------------------------cccCCCCCCC-------------CCeE
Q psy2775         524 GDATFQVELSS-PDIQVKWLNLFIV----------------------------PTCPLGSPGQ-------------APLF  561 (785)
Q Consensus       524 ~~~~~~~~~~~-~~~~~~W~~~~~~----------------------------~~~~~~~~~~-------------~p~~  561 (785)
                      ..+.|.|.+.+ |...+.|++++..                            |.|.+.....             +|.+
T Consensus       542 ~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~  621 (816)
T 3dmk_A          542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI  621 (816)
T ss_dssp             CCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCC
T ss_pred             CeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCcc
Confidence            99999999874 6678999988754                            4454432211             1222


Q ss_pred             ee-eeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         562 IE-RFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       562 ~~-~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .. ......+.+|+.++|.|.+.+.|+| .|+|+++|..+..+.+..... .+...+|.|.++.. +|+|.|+|.|.|..
T Consensus       622 ~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~  700 (816)
T 3dmk_A          622 IPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEA-SHAGNFTCHARNLA  700 (816)
T ss_dssp             BCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCG-GGCEEEEEEEECSS
T ss_pred             ccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCCh-hhCEEEEEEEEeCC
Confidence            11 1234568899999999999877665 999999999986655544433 34567899999999 99999999999999


Q ss_pred             cceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEE
Q psy2775         639 GSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRF  718 (785)
Q Consensus       639 g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~  718 (785)
                      |....++.|.|.                                         .+|.+.. .+....+..|+.++|.|.+
T Consensus       701 g~~~~~~~l~V~-----------------------------------------~~P~~~~-~~~~~~v~~G~~v~l~C~~  738 (816)
T 3dmk_A          701 GHQQFTTPLNVY-----------------------------------------VPPRWIL-EPTDKAFAQGSDAKVECKA  738 (816)
T ss_dssp             CEEEEEEEECEE-----------------------------------------EEEEEEE-CCCCEEEETTCCEEEECEE
T ss_pred             ccEEEEEEEEEE-----------------------------------------eCCceee-ecccceecCCCcEEEEEEE
Confidence            999988888887                                         4455543 3345678899999999999


Q ss_pred             ecCCCCceEEeECCEEeeec-------cccccchhhhcccccceeeeeeceEEEEEEec
Q psy2775         719 KALPPPKAEWTVNGTVIVPS-------KRVKGKAEFIKKLDDLEVKERENAVLEVEVTS  770 (785)
Q Consensus       719 ~g~P~p~i~W~~~~~~~~~~-------~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~  770 (785)
                      .|.|.|.|+|++++..+...       .+...   -...|.+..+...|+|.|+|.+.+
T Consensus       739 ~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N  794 (816)
T 3dmk_A          739 DGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV---EEGTLHVDNIQKTNEGYYLCEAIN  794 (816)
T ss_dssp             EEESCCEEECCEECSSSTTCCBCCCCBTTEEE---ETTEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecCCCCeEEEEecCCCCCccccccccCCCEEe---cCCEEEECcCChhhCeEEEEEEEe
Confidence            99999999999988654322       11111   112688889999999999999997

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=5.4e-61  Score=547.06  Aligned_cols=513  Identities=18%  Similarity=0.314  Sum_probs=403.2

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      +|.|... ....+.+|++++|.|.+.+ |.+.+.|++++..+....++.+...+      ..|+|.+++.+|+|.|+|.|
T Consensus       112 ~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a  183 (642)
T 1e07_A          112 KPSISSN-NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGN------RTLTLFNVTRNDTASYKCET  183 (642)
T ss_pred             CCcEEcc-CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEcCCC------CEEEEeCCCcccCeeEEEEE
Confidence            5566543 3567889999999999988 88999999999999877776654433      35999999999999999999


Q ss_pred             EcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEE
Q psy2775          92 KNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL  170 (785)
Q Consensus        92 ~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i  170 (785)
                      .|..+.. +..+.|.|..   .|+.+...+....+.+|+.+.|.|.+.|.|.+.++|++||..+..        ...|.|
T Consensus       184 ~n~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~--------~~~L~i  252 (642)
T 1e07_A          184 QNPVSARRSDSVILNVLY---GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS--------TQELFI  252 (642)
T ss_pred             ecCCCCcccceEEEEEEe---CCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEccc--------CCceEE
Confidence            9987753 3456677763   122223334566788999999999999999999999999988742        346999


Q ss_pred             cccCCCCcEEEEEEEEcCCeeEEEE--EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeC
Q psy2775         171 IQCSTKDKGRYSVKVTNKEGTVESA--ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT  248 (785)
Q Consensus       171 ~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  248 (785)
                      .+++.+|+|.|+|.|.|..|....+  +.|.|...+                             .+|.+.. .....+.
T Consensus       253 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~-----------------------------~~p~i~~-~~~~~~~  302 (642)
T 1e07_A          253 PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP-----------------------------PKPFITS-NNSNPVE  302 (642)
T ss_pred             ecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccC-----------------------------CCCEEEc-CCceeEe
Confidence            9999999999999999998865544  455554321                             2233332 2334455


Q ss_pred             CCCeEEEEEEEccCCCCeEEEEECCEEccc-ceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceE-EEEEEEEeccc
Q psy2775         249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKD-RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANLNVDQGK  326 (785)
Q Consensus       249 ~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~v~~~~  326 (785)
                      .|+.+.|.|.+.+.| +.+.|+++|..+.. ...........|.|.++..+|+|.|+|.|.|..|... ..+.|.|...|
T Consensus       303 ~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p  381 (642)
T 1e07_A          303 DEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP  381 (642)
T ss_pred             cCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCC
Confidence            688899999998876 69999999988762 2333333456899999999999999999999988643 45788888766


Q ss_pred             cceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccce
Q psy2775         327 AEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQET  405 (785)
Q Consensus       327 ~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~  405 (785)
                      ..+...+....+.+|+.+.|.|.+.+ |.+.++|+++|..+...           ..|.|.++..+|+|.|+|.|.|..+
T Consensus       382 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g  450 (642)
T 1e07_A          382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-----------QELFISNITEKNSGLYTCQANNSAS  450 (642)
T ss_pred             CCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC-----------ceEEEccCChhhCeEEEEEEEcCCC
Confidence            65555566778899999999999987 78899999999887542           2399999999999999999998654


Q ss_pred             E------EEEEEEec--CCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccC
Q psy2775         406 S------AELNVVEL--PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA  477 (785)
Q Consensus       406 ~------~~~~v~~~--~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  477 (785)
                      .      ..+.+...  +|.+. ......+.+|+.++|.|.+.++.+.+.|+++|..+....++.+..++  ..|+|.++
T Consensus       451 ~~~~s~~~~v~v~~~~~~p~i~-~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v  527 (642)
T 1e07_A          451 GHSRTTVKTITVSAELPKPSIS-SNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNV  527 (642)
T ss_pred             CCcccceEEEEEeccCCCceEe-cCCceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCCCcEEEcCCC--cEEEEeec
Confidence            2      22333332  33333 33456678999999999999888899999999999887777765544  58999999


Q ss_pred             CCCCcEEEEEEEeec-Ccce-eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         478 GLEDAGEYSCRVGDT-GDKE-SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      ..+|+|.|+|.|.|. |... ..+.|.|..+|.                                               
T Consensus       528 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~-----------------------------------------------  560 (642)
T 1e07_A          528 TRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD-----------------------------------------------  560 (642)
T ss_pred             ChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC-----------------------------------------------
Confidence            999999999999998 6543 368888886542                                               


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                          .+...+.+..+.+|+.++|.|.+.|+|.|.|+|+|+|..+..+           ..|.|.++.. +|+|.|+|.|.
T Consensus       561 ----~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~-----------~~L~i~~~~~-~d~G~Y~C~a~  624 (642)
T 1e07_A          561 ----TPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVLFIAKITP-NNNGTYACFVS  624 (642)
T ss_pred             ----cceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC-----------ceEEECcccc-cCCeEEEEEEE
Confidence                2222234567899999999999999999999999999987532           3699999999 99999999999


Q ss_pred             cCCcceEEEEEEEEEe
Q psy2775         636 NELGSATHGARVTVDV  651 (785)
Q Consensus       636 n~~g~~~~~~~l~V~~  651 (785)
                      |..|....++.|.|.+
T Consensus       625 N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          625 NLATGRNNSIVKSITV  640 (642)
T ss_pred             ecccCcceeEEEEEEE
Confidence            9999999999999875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=2.8e-60  Score=556.69  Aligned_cols=532  Identities=23%  Similarity=0.356  Sum_probs=424.3

Q ss_pred             CCCeeeecC--CceEecCCCeEEEEEEEEecCCCeeEEEECCEEc------cCCCCEEEeecCCccceEEEEEEcccCCC
Q psy2775          11 IPPTFSKKT--KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL------QETDEVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        11 ~~p~~~~~~--~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      .+|.|...+  ....+.+|++++|.|.+.|.|.+.+.|+|++...      ....+...        ...+|.|.+++.+
T Consensus       245 ~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~  316 (816)
T 3dmk_A          245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ--------VSGTLIIKDAVVE  316 (816)
T ss_dssp             CCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEEE--------ETTEEEECSCCGG
T ss_pred             CCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceEe--------ccceEEECCCCHh
Confidence            367775433  5688999999999999999999999999954322      12222211        1135999999999


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEe
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE  162 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~  162 (785)
                      |+|.|+|.|.|..|.......|.|.    .+|.+...+....+.+|+.+.|.|.+.|.|.+.++|++||..+...     
T Consensus       317 D~G~Y~C~a~n~~g~~~~~~~l~V~----~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-----  387 (816)
T 3dmk_A          317 DSGKYLCVVNNSVGGESVETVLTVT----APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-----  387 (816)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEC----EEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-----
T ss_pred             HCEEEEEEEEcCCCceEEEEEEEEc----CCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-----
Confidence            9999999999999988888888886    3556666667788999999999999999999999999999988543     


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecC
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPL  242 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  242 (785)
                        ...|.|.+++.+|+|.|+|.|.|..|....+..+.|....                             .+|.+...+
T Consensus       388 --~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~-----------------------------~~p~i~~~~  436 (816)
T 3dmk_A          388 --ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF-----------------------------DPPVIRQAF  436 (816)
T ss_dssp             --SSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSS-----------------------------CCCEEEEEC
T ss_pred             --CCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcccc-----------------------------CCCceEecC
Confidence              3479999999999999999999999988888888775432                             457777777


Q ss_pred             CcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccc-eEEE-------eCCEEEEEEccCCCCCCeEEEEEEEeCCCce
Q psy2775         243 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QITS-------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV  314 (785)
Q Consensus       243 ~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  314 (785)
                      ....+.+|+.+.|.|.+.|+|.+.+.|+++|..+... ....       ......|.|.++..+|+|.|+|.|.|..|..
T Consensus       437 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  516 (816)
T 3dmk_A          437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA  516 (816)
T ss_dssp             CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE
T ss_pred             cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE
Confidence            7788999999999999999999999999999988621 1111       1224579999999999999999999999998


Q ss_pred             EEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCC-CCC
Q psy2775         315 ESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNIS-VHD  392 (785)
Q Consensus       315 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~d  392 (785)
                      ..++.|.|...|  +........+..|+.+.|.|.+.+ |.+.+.|++++..+....+.....++.   |.|.++. .+|
T Consensus       517 ~~~~~l~V~~~p--~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~---l~i~~v~~~~d  591 (816)
T 3dmk_A          517 EHSAKLNVYGLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT---LIIENVERNSD  591 (816)
T ss_dssp             EEEEEEEECSSC--EECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSE---EEESSCCHHHH
T ss_pred             EEEEEEEEecCC--eeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCe---EEEEecCcccc
Confidence            888999998644  334445667889999999999987 667999999999998777766655554   9999998 689


Q ss_pred             ceEEEEEEeccce-----EEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-C-CceEEEEECCEEcccCCCEEEEE
Q psy2775         393 EGEYTCSLPDQET-----SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-G-DALVKWYKDGKEIAFSENVTLSI  465 (785)
Q Consensus       393 ~G~Y~C~a~n~~~-----~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~-~~~i~W~~~~~~~~~~~~~~~~~  465 (785)
                      +|.|+|.|.|..+     ...+.+...|...........+.+|+.++|.|.+.+ + ++.+.|+++|..+..........
T Consensus       592 ~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~  671 (816)
T 3dmk_A          592 QATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR  671 (816)
T ss_dssp             CEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEE
T ss_pred             CEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEE
Confidence            9999999998654     223334444444334445666889999999999976 3 34899999999987665555543


Q ss_pred             -eCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEee
Q psy2775         466 -DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLN  543 (785)
Q Consensus       466 -~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  543 (785)
                       .+..+.|+|.++..+|+|.|+|.|.|. |....++.|.|..+                                     
T Consensus       672 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~-------------------------------------  714 (816)
T 3dmk_A          672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-------------------------------------  714 (816)
T ss_dssp             ETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEE-------------------------------------
T ss_pred             cCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeC-------------------------------------
Confidence             345788999999999999999999998 88888888988865                                     


Q ss_pred             cccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCC-----eeEEeeCCeEEEEE
Q psy2775         544 LFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-----KREIFDGENIILEL  618 (785)
Q Consensus       544 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~-----~~~~~~~~~~~L~i  618 (785)
                                     |.|...+.+..+.+|++++|.|.+.|+|.|.|+|+|++..+.....     ......  ..+|.|
T Consensus       715 ---------------P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~--~~~L~i  777 (816)
T 3dmk_A          715 ---------------PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE--EGTLHV  777 (816)
T ss_dssp             ---------------EEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEE--TTEEEE
T ss_pred             ---------------CceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEec--CCEEEE
Confidence                           5555555677889999999999999999999999998765432111     011122  236999


Q ss_pred             ccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         619 KEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .++.. +|+|.|+|.|.|..|++..++.+..+
T Consensus       778 ~~v~~-~d~G~Y~C~a~N~~G~~~~~v~~~~~  808 (816)
T 3dmk_A          778 DNIQK-TNEGYYLCEAINGIGSGLSAVIMISV  808 (816)
T ss_dssp             CSCCG-GGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             CcCCh-hhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence            99999 99999999999999999998877765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=2.1e-61  Score=563.91  Aligned_cols=620  Identities=18%  Similarity=0.243  Sum_probs=122.3

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..+|.|...+..+.+.+|++|+|.|.+.+    .+.|++.+.......+..+....+ ..+.++|+|.+++.+|+|.|+|
T Consensus        29 ~~~p~l~~~~~~~~v~~G~~vtL~C~~~~----~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~C  103 (772)
T 3v2a_R           29 LDLPRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQSGSEQRVEVTECSD-GLFCKTLTIPKVIGNDTGAYKC  103 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCEECCCCCeEEEcCCCCEEEEEeccC----CeeeeCCCCCCccCCceeEEEcCC-CcEEEEEEECCCcHhhCEeEEE
Confidence            35677777778899999999999999753    589988776544333433332111 1234679999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCcee---cCCCceEeccC--CcEEEEEEEeccCCCeEEEeEC--CEEccc-ceEEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSIL---EPLHDVSITEG--ESAVLSVQVGGEPSPKVEWYKD--GKLIKD-RQITS  161 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~---~~~~~~~~~~G--~~v~l~C~~~g~p~~~v~W~~~--g~~~~~-~~~~~  161 (785)
                      .+.+.  .....+.|.|.  .+..|.+.   ..+..+.+.+|  +.++|.|.+.+ |.+.+.|+++  |..+.. .....
T Consensus       104 ~~~~~--~~~~~~~v~v~--~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~  178 (772)
T 3v2a_R          104 FYRET--DLASVIYVYVQ--DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRIS  178 (772)
T ss_dssp             --------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCE
T ss_pred             EEcCC--CEEEEEEEEEC--CCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceee
Confidence            99832  22333344443  22334332   22345678889  89999999976 7789999997  655433 22111


Q ss_pred             eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCee-e
Q psy2775         162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI-L  239 (785)
Q Consensus       162 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~  239 (785)
                      ......|.|.+++.+|+|.|+|.+.+........ ..+.+...                              .+|.+ +
T Consensus       179 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~------------------------------~~~~v~~  228 (772)
T 3v2a_R          179 WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY------------------------------RIYDVVL  228 (772)
T ss_dssp             EETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECC------------------------------CEEEEEE
T ss_pred             cCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecC------------------------------ccceeee
Confidence            2233469999999999999999999875543332 33333321                              11222 3


Q ss_pred             ecCCcceeCCCCeEEEEEEEcc--CCCCeEEEEECCEEcccceE-----------EEeCCEEEEEEccCCCCCCeEEEEE
Q psy2775         240 EPLHDVSITEGESAVLSVQVGG--EPSPKVEWYKDGKLIKDRQI-----------TSEKNTHTLTLIQCSTKDKGRYSVK  306 (785)
Q Consensus       240 ~~~~~~~~~~G~~~~l~C~~~g--~p~~~v~W~~~~~~l~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~  306 (785)
                      .+.....+.+|+.++|.|.+.+  .|.+.+.|++++..+.....           ........|.|.+++.+|+|.|+|.
T Consensus       229 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  308 (772)
T 3v2a_R          229 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA  308 (772)
T ss_dssp             ECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEE
T ss_pred             CCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEE
Confidence            3333467889999999999987  45678999999887552111           1122356899999999999999999


Q ss_pred             EEeCCCceEEEEEEEEeccccceeee--ccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEE
Q psy2775         307 VTNKEGTVESAANLNVDQGKAEFIKK--LDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKL  383 (785)
Q Consensus       307 ~~n~~g~~~~~~~l~v~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l  383 (785)
                      +.|..+.....+.|.|...|......  .....+.+|+.++|.|.+.+ |.+.+.|+++|..+.......     ....|
T Consensus       309 ~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~-----~~~~L  383 (772)
T 3v2a_R          309 ASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVL  383 (772)
T ss_dssp             EECSSCEEEEEEEEEEECCCC-----------------------------------------------------------
T ss_pred             EEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc-----cceeE
Confidence            99998888888889988744332221  23567889999999999988 678999999999887543322     12349


Q ss_pred             EEcCCCCCCceEEEEEEeccceEE------EEEEEecCCcccccC---CCeEEecCCcEEEEEEEeC-CCce-EEEEECC
Q psy2775         384 LIRNISVHDEGEYTCSLPDQETSA------ELNVVELPPEISVPL---QDVKVSRDEKASFEIELTK-GDAL-VKWYKDG  452 (785)
Q Consensus       384 ~i~~~~~~d~G~Y~C~a~n~~~~~------~~~v~~~~~~~~~~~---~~~~v~~g~~~~l~C~~~~-~~~~-i~W~~~~  452 (785)
                      .|.++..+|+|.|+|.|.|..+..      .+.|. .+|.+....   ....+.+|+.++|.|.+.+ +.|. +.|++++
T Consensus       384 ~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~-~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~  462 (772)
T 3v2a_R          384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQL  462 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEecCChhcCceEEEEEEECCcCeEEEEEEEEEEe-cCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcC
Confidence            999999999999999999875532      22333 344443221   1123778999999999988 6665 9999974


Q ss_pred             EE--------------------------------cccC-CCEEEEEe--CcEEEEEEccCCCCCcEEEEEEEeec-Ccce
Q psy2775         453 KE--------------------------------IAFS-ENVTLSID--GKKQKLIIFSAGLEDAGEYSCRVGDT-GDKE  496 (785)
Q Consensus       453 ~~--------------------------------~~~~-~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~  496 (785)
                      ..                                +... .+..+..+  ...+.|.|.++  +|+|.|+|.|.|. |...
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~  540 (772)
T 3v2a_R          463 EEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGE  540 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccc
Confidence            32                                1100 01111111  12356777776  7899999999998 8778


Q ss_pred             eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeE
Q psy2775         497 SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTI  576 (785)
Q Consensus       497 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v  576 (785)
                      ..+.|.|..++                                                    .+...+ ...+.+|+.+
T Consensus       541 ~~~~l~V~~~p----------------------------------------------------~i~~~p-~~~~~~G~~v  567 (772)
T 3v2a_R          541 RVISFHVTRGP----------------------------------------------------EITLQP-DMQPTEQESV  567 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEEEEECCc----------------------------------------------------eeeccC-CcccccCCce
Confidence            88888887642                                                    111111 2347789999


Q ss_pred             EEEEEEecCCCCceEEEeCCEEecCCCCeeEE--------------------eeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         577 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--------------------FDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       577 ~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~--------------------~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|.+.|.|.|.|.|+|+|..+.........                    ..+...+|.|.++.. +|+|.|+|.|.|
T Consensus       568 ~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n  646 (772)
T 3v2a_R          568 SLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL-QDQGDYVCLAQD  646 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCc-cCCcEEEEEEEe
Confidence            99999999999999999998776443221111                    112245699999999 999999999999


Q ss_pred             CCcceEEE--EEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEE
Q psy2775         637 ELGSATHG--ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKI  714 (785)
Q Consensus       637 ~~g~~~~~--~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l  714 (785)
                      ..|....+  ..|.|.                                       +..+|.+.. ......+..|++++|
T Consensus       647 ~~~~~~~s~~~~l~v~---------------------------------------~~~~P~~~~-~~~~~~v~~g~~~~l  686 (772)
T 3v2a_R          647 RKTKKRHCVVRQLTVL---------------------------------------ERVAPTITG-NLENQTTSIGESIEV  686 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEEEeeccc---------------------------------------ccCCCEeec-CCCceEEeCCCCEEE
Confidence            76654433  344443                                       225677654 344567889999999


Q ss_pred             EEEEecCCCCceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEEEEEeccc
Q psy2775         715 EVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       715 ~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~~~  772 (785)
                      .|.+.|.|.|.|+|+|||..+..+.++.+... ...|.+..+...|+|.|+|.+.+..
T Consensus       687 ~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~  743 (772)
T 3v2a_R          687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDG-NRNLTIRRVRKEDEGLYTCQACSVL  743 (772)
T ss_dssp             ----------------------------------------------------------
T ss_pred             EEEeCccCCCeEEEEECCeECcCCCCeEEcCC-CcEEEECcCCHHHCEEEEEEEEeCC
Confidence            99999999999999999999988876655432 2479999999999999999998743

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=8.2e-56  Score=516.73  Aligned_cols=533  Identities=20%  Similarity=0.281  Sum_probs=124.0

Q ss_pred             ecCCceEecCC--CeEEEEEEEEecCCCeeEEEEC--CEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          17 KKTKPVYAEEN--SEVTLEVRLVAVPEPDLLWYYN--GEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        17 ~~~~~~~v~~G--~~v~l~C~~~g~p~~~i~W~~~--~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      ..+..+.+.+|  ++++|.|.+.+ |.+.+.|+++  +..+.... ..... ..      ..|.|.+++.+|+|.|+|.+
T Consensus       131 ~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~-~~------~~l~i~~~~~~d~G~Y~C~~  202 (772)
T 3v2a_R          131 DQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD-SK------KGFTIPSYMISYAGMVFCEA  202 (772)
T ss_dssp             -CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEEE-TT------TEEEEEGGGTTTCSEEEEEE
T ss_pred             ccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeecC-CC------CCeEecCCChhhCeEEEEEE
Confidence            34567889999  99999999976 7789999997  65544332 22222 11      23999999999999999999


Q ss_pred             EcCCeeEEEE-eeEEEeCCCCCCCceec-CCCceEeccCCcEEEEEEEec--cCCCeEEEeECCEEcccceEE-------
Q psy2775          92 KNREGEAKMD-IPVKVNTGKPEKPSILE-PLHDVSITEGESAVLSVQVGG--EPSPKVEWYKDGKLIKDRQIT-------  160 (785)
Q Consensus        92 ~~~~~~~~~~-~~v~v~~~~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g--~p~~~v~W~~~g~~~~~~~~~-------  160 (785)
                      .+........ ..+.+..  ..+|.+.. +.....+.+|+.+.|.|.+.+  .+.+.+.|++++..+......       
T Consensus       203 ~~~~~~~~s~~~~~~v~~--~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  280 (772)
T 3v2a_R          203 KINDESYQSIMYIVVVVG--YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ  280 (772)
T ss_dssp             EETTEEEECCEEEEEEEC--CCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC---
T ss_pred             EECCceEEEEEEEEEEec--CccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccccc
Confidence            9865543332 2333321  22333333 444578999999999999987  445689999998876543211       


Q ss_pred             ----EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCC
Q psy2775         161 ----SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP  236 (785)
Q Consensus       161 ----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  236 (785)
                          ......+|.|.+++.+|+|.|+|.|.|..+..+..+.|.|...+                                
T Consensus       281 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p--------------------------------  328 (772)
T 3v2a_R          281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP--------------------------------  328 (772)
T ss_dssp             --CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCC--------------------------------
T ss_pred             ccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCC--------------------------------
Confidence                12235689999999999999999999999988888888887432                                


Q ss_pred             eeee---cCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCc
Q psy2775         237 SILE---PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT  313 (785)
Q Consensus       237 ~~~~---~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  313 (785)
                      .+..   ......+.+|+.+.|.|.+.++|.+.+.|+++|..+.......  ....|.|.++..+|+|.|+|.|.|..|.
T Consensus       329 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  406 (772)
T 3v2a_R          329 FVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK--AGHVLTIMEVSERDTGNYTVILTNPISK  406 (772)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             eeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc--cceeEEEecCChhcCceEEEEEEECCcC
Confidence            1111   1234567899999999999999999999999998876422111  3468999999999999999999999886


Q ss_pred             eEE--EEEEEEeccccceeee--ccceeEeeCccEEEEEEEcC-CCCe-EEEEECCEE----------------------
Q psy2775         314 VES--AANLNVDQGKAEFIKK--LDDLEVKERENAVLEVEVTS-DKAD-VKWFKDGQE----------------------  365 (785)
Q Consensus       314 ~~~--~~~l~v~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~-~~~~-v~W~~~~~~----------------------  365 (785)
                      ...  .+.|.|..+|......  .....+.+|+.++|.|.+.+ |.+. ++|++++..                      
T Consensus       407 ~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (772)
T 3v2a_R          407 EKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWR  486 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCcccccc
Confidence            543  4566666433322111  11124789999999999987 5665 999986432                      


Q ss_pred             ----------cCCCC-cEEEEE--cCcEEEEEEcCCCCCCceEEEEEEeccceEEE----EEEEecCCcccccCCCeEEe
Q psy2775         366 ----------IKTSK-KVTIEK--KGTIRKLLIRNISVHDEGEYTCSLPDQETSAE----LNVVELPPEISVPLQDVKVS  428 (785)
Q Consensus       366 ----------l~~~~-~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~----~~v~~~~~~~~~~~~~~~v~  428 (785)
                                +.... +.....  ......|.|.++  +|+|.|+|.|.|..+...    +.|.. +|.+...+. ..+.
T Consensus       487 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~-~p~i~~~p~-~~~~  562 (772)
T 3v2a_R          487 SVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR-GPEITLQPD-MQPT  562 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC-CceeeccCC-cccc
Confidence                      11101 111111  112245777776  689999999998766443    33333 444444433 3477


Q ss_pred             cCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEE--------------------EEeCcEEEEEEccCCCCCcEEEEE
Q psy2775         429 RDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTL--------------------SIDGKKQKLIIFSAGLEDAGEYSC  487 (785)
Q Consensus       429 ~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~--------------------~~~~~~~~L~i~~~~~~d~G~Y~C  487 (785)
                      +|+.+.|.|.+.+ +.+.+.|++++..+........                    ........|+|.+++.+|+|.|+|
T Consensus       563 ~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  642 (772)
T 3v2a_R          563 EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVC  642 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEE
Confidence            9999999999988 6788999999876543322111                    111123569999999999999999


Q ss_pred             EEeec-Cccee--EEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeee
Q psy2775         488 RVGDT-GDKES--KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER  564 (785)
Q Consensus       488 ~a~n~-g~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~  564 (785)
                      .|.|. +....  ...|.|....                                                  +|.|...
T Consensus       643 ~a~n~~~~~~~s~~~~l~v~~~~--------------------------------------------------~P~~~~~  672 (772)
T 3v2a_R          643 LAQDRKTKKRHCVVRQLTVLERV--------------------------------------------------APTITGN  672 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEeCCCCeEEEEEEeecccccC--------------------------------------------------CCEeecC
Confidence            99995 44332  3455553221                                                  2666666


Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      +.+..+.+|++++|.|.+.|.|.|.|+|+|+|.++..+.+.  ....+..+|.|.++.. +|+|.|+|.|.|..|....+
T Consensus       673 ~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~  749 (772)
T 3v2a_R          673 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRK-EDEGLYTCQACSVLGCAKVE  749 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCe--EEcCCCcEEEECcCCH-HHCEEEEEEEEeCCcceeEE
Confidence            66788999999999999999999999999999999776543  2334456899999999 99999999999999999999


Q ss_pred             EEEEEE
Q psy2775         645 ARVTVD  650 (785)
Q Consensus       645 ~~l~V~  650 (785)
                      +.|.|+
T Consensus       750 ~~l~V~  755 (772)
T 3v2a_R          750 AFFIIE  755 (772)
T ss_dssp             ------
T ss_pred             EEEEEE
Confidence            999887

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=2.2e-50  Score=447.77  Aligned_cols=452  Identities=13%  Similarity=0.129  Sum_probs=312.2

Q ss_pred             EcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEc
Q psy2775          92 KNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI  171 (785)
Q Consensus        92 ~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~  171 (785)
                      .+..|.....+.|.|.    .||.|........+.+|+.+.|.|.+.+    .++|+++|..+.     ......+|.|.
T Consensus        19 ~~~~g~~~~~i~l~v~----~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~-----~~~~~~~L~I~   85 (524)
T 2ec8_A           19 RVQTGSSQPSVSPGEP----SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET-----NENKQNEWITE   85 (524)
T ss_dssp             --------------CC----CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC-----EEECSSEEEES
T ss_pred             hhhcCCCCCeEEcCCC----CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc-----ccCccceEEEc
Confidence            3444445555666665    6888887778889999999999999876    899999998772     23345689999


Q ss_pred             ccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCC
Q psy2775         172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGE  251 (785)
Q Consensus       172 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~  251 (785)
                      +++.+|+|.|+|.|.|  |. +..+.|.|...                                |.+...+....+.+|+
T Consensus        86 ~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~~p--------------------------------~~~~~~~~~~~v~~G~  130 (524)
T 2ec8_A           86 KAEATNTGKYTCTNKH--GL-SNSIYVFVRDP--------------------------------AKLFLVDRSLYGKEDN  130 (524)
T ss_dssp             SCCSTTCEEEEEEETT--SC-EEEEEEECCCS--------------------------------SCSBCCCCCCCEETTS
T ss_pred             ccchhhCEEEEEeecC--Cc-ceEEEEEECCC--------------------------------CcccccccceEEEcCC
Confidence            9999999999999998  43 56677777532                                2222344466788999


Q ss_pred             eEEEEEEEccCCCCeEEEEE-CCEEcccceEEEeCCEEEEEEccCCCCCCe-EEEEEEEeCCCceEE-EEEEEEe---cc
Q psy2775         252 SAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKG-RYSVKVTNKEGTVES-AANLNVD---QG  325 (785)
Q Consensus       252 ~~~l~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~n~~g~~~~-~~~l~v~---~~  325 (785)
                      .+.|.|.+.+.|.+.+.|++ +|..+.............|.|.++..+|+| .|+|.|.|..+...+ .+.|.|.   ..
T Consensus       131 ~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~  210 (524)
T 2ec8_A          131 DTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKA  210 (524)
T ss_dssp             CEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCS
T ss_pred             eEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCC
Confidence            99999999987778999998 787776322221122337999999999999 999999998765533 5778776   35


Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcC-CCCe-EEEEECCEEc--CCCCcEEEEE---cCcEEEEEEcCCCCCCceEEEE
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTS-DKAD-VKWFKDGQEI--KTSKKVTIEK---KGTIRKLLIRNISVHDEGEYTC  398 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-v~W~~~~~~l--~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C  398 (785)
                      +|.+...+....+.+|+.+.|.|.+.+ +.+. ++|++++..+  .......+..   ......|.|.++..+|+|.|+|
T Consensus       211 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C  290 (524)
T 2ec8_A          211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC  290 (524)
T ss_dssp             CCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEE
T ss_pred             CCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEE
Confidence            666666667778999999999999987 4454 9999999874  2222222211   1123569999999999999999


Q ss_pred             EEeccceEE----EEEEEecCCcccccC---CCeEEecCCcEEEEEEEeC-CCce-EEEEECCEEcccCC-CEEEEEeC-
Q psy2775         399 SLPDQETSA----ELNVVELPPEISVPL---QDVKVSRDEKASFEIELTK-GDAL-VKWYKDGKEIAFSE-NVTLSIDG-  467 (785)
Q Consensus       399 ~a~n~~~~~----~~~v~~~~~~~~~~~---~~~~v~~g~~~~l~C~~~~-~~~~-i~W~~~~~~~~~~~-~~~~~~~~-  467 (785)
                      .|.|..+..    .+.|. .+|.+...+   ....+.+|+.++|.|.+.+ |.|. +.|+++|..+.... ++....++ 
T Consensus       291 ~a~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~  369 (524)
T 2ec8_A          291 YANNTFGSANVTTTLEVV-DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES  369 (524)
T ss_dssp             EEECSSCEEEEEEEEEEE-SSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSS
T ss_pred             EEEecCCceEEEEEEEEe-ccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCC
Confidence            999865543    33444 345554433   3677899999999999988 7778 99999999886654 33322222 


Q ss_pred             ---cEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEee
Q psy2775         468 ---KKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLN  543 (785)
Q Consensus       468 ---~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  543 (785)
                         ....|.|.+++.+|+|.|+|.|.|. |....++.|.|..+                                     
T Consensus       370 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~-------------------------------------  412 (524)
T 2ec8_A          370 NIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK-------------------------------------  412 (524)
T ss_dssp             CCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEE-------------------------------------
T ss_pred             CceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecC-------------------------------------
Confidence               3578999999999999999999998 88888888888765                                     


Q ss_pred             cccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecC--------CCCeeEE--eeCCe
Q psy2775         544 LFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS--------SPKKREI--FDGEN  613 (785)
Q Consensus       544 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~--------~~~~~~~--~~~~~  613 (785)
                                     |.+.....   +.+|   +|.|.+.|+|.|.|+|+|++..+..        +......  ...+.
T Consensus       413 ---------------P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  471 (524)
T 2ec8_A          413 ---------------PEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGK  471 (524)
T ss_dssp             ---------------EEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSC
T ss_pred             ---------------CeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCc
Confidence                           33333222   3455   9999999999999999999876521        1111111  11222


Q ss_pred             E-E-EEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         614 I-I-LELKEADSETDAGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       614 ~-~-L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      . . +.+..... +|+|.|+|.|.|..|....++.|.|+.
T Consensus       472 ~~~~s~l~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~e  510 (524)
T 2ec8_A          472 LVVQSSIDSSAF-KHNGTVECKAYNDVGKTSAYFNFAFKG  510 (524)
T ss_dssp             EEEEEEECCCSC-CC-----CEEECSSCEEECCCCCCC--
T ss_pred             ceEEEEEEEEEc-cCCEEEEEEEEcCCCceEEEEEEEEec
Confidence            1 1 22444445 899999999999999999999888873

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=7.6e-49  Score=435.38  Aligned_cols=423  Identities=17%  Similarity=0.218  Sum_probs=310.0

Q ss_pred             CCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCc
Q psy2775         234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT  313 (785)
Q Consensus       234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  313 (785)
                      .+|.+...+....+.+|+.++|.|.+.+    .+.|++++..+.     .......|.|.+++.+|+|.|+|.+.|  |.
T Consensus        35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~  103 (524)
T 2ec8_A           35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET-----NENKQNEWITEKAEATNTGKYTCTNKH--GL  103 (524)
T ss_dssp             CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC-----EEECSSEEEESSCCSTTCEEEEEEETT--SC
T ss_pred             CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc-----ccCccceEEEcccchhhCEEEEEeecC--Cc
Confidence            5577777777788999999999999976    999999998762     223456899999999999999999999  43


Q ss_pred             eEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcCCC-CeEEEEE-CCEEcCCCCcEEEEEcCcEEEEEEcCCCCC
Q psy2775         314 VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK-ADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVH  391 (785)
Q Consensus       314 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~v~W~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~  391 (785)
                       ..++.|.|..++..+ ..+....+.+|+.+.|.|.+.+++ +.++|++ +|..+..+.++.....+.   |.|.++..+
T Consensus       104 -~~~~~l~V~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~---L~i~~~~~~  178 (524)
T 2ec8_A          104 -SNSIYVFVRDPAKLF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG---IMIKSVKRA  178 (524)
T ss_dssp             -EEEEEEECCCSSCSB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTE---EEEESCCGG
T ss_pred             -ceEEEEEECCCCccc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCcc---EEEeccchh
Confidence             667788887644444 556677889999999999999865 8999988 888887766766655554   999999999


Q ss_pred             Cce-EEEEEEeccce-----EEEEEEE---ecCCcccccCCCeEEecCCcEEEEEEEeC-CCce-EEEEECCEEc--ccC
Q psy2775         392 DEG-EYTCSLPDQET-----SAELNVV---ELPPEISVPLQDVKVSRDEKASFEIELTK-GDAL-VKWYKDGKEI--AFS  458 (785)
Q Consensus       392 d~G-~Y~C~a~n~~~-----~~~~~v~---~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~-i~W~~~~~~~--~~~  458 (785)
                      |+| .|+|.|.|..+     ...+.|.   ..+|.+...+....+.+|+.++|.|.+.+ +.+. +.|++++..+  ...
T Consensus       179 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~  258 (524)
T 2ec8_A          179 YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK  258 (524)
T ss_dssp             GTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEE
T ss_pred             hCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccc
Confidence            999 99999987543     3445554   36788877777888999999999999998 5555 9999999873  322


Q ss_pred             CCEEEE---EeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecC
Q psy2775         459 ENVTLS---IDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS  534 (785)
Q Consensus       459 ~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (785)
                      ....+.   .......|.|.+++.+|+|.|+|.|.|. |.....+.|.|..+|                           
T Consensus       259 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p---------------------------  311 (524)
T 2ec8_A          259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG---------------------------  311 (524)
T ss_dssp             EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSC---------------------------
T ss_pred             cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccC---------------------------
Confidence            222222   1123468999999999999999999998 888888999998763                           


Q ss_pred             CceeeEEeecccccccCCCCCCCCCeEeee---eeeeeeeecCeEEEEEEEecCCCCc-eEEEeCCEEecCCCCeeEEee
Q psy2775         535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIER---FEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFD  610 (785)
Q Consensus       535 ~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~---~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~i~~~~~~~~~~~  610 (785)
                                               .+...   .....+.+|+.++|.|.+.|+|.|. |+|+|+|..+...........
T Consensus       312 -------------------------~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~  366 (524)
T 2ec8_A          312 -------------------------FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE  366 (524)
T ss_dssp             -------------------------EEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCC
T ss_pred             -------------------------ceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEc
Confidence                                     22211   1356889999999999999999999 999999999876653333332


Q ss_pred             C-----CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeee
Q psy2775         611 G-----ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD  685 (785)
Q Consensus       611 ~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (785)
                      .     ...+|.|.++.. +|+|.|+|.|.|..|....++.|.|.                                   
T Consensus       367 ~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~-----------------------------------  410 (524)
T 2ec8_A          367 NESNIRYVSELHLTRLKG-TEGGTYTFLVSNSDVNAAIAFNVYVN-----------------------------------  410 (524)
T ss_dssp             SSSCCEEEEEEEECSCCG-GGCEEEEEEEECSSCEEEEEEEEEEC-----------------------------------
T ss_pred             cCCCceeEEEEEEeecCc-ccCeEEEEEEEecCceEEEEEEEEEe-----------------------------------
Confidence            2     357899999999 99999999999999998888888876                                   


Q ss_pred             ecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCCceEEeECCEEeee-------cccccc-c-hhhhccccc---
Q psy2775         686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVP-------SKRVKG-K-AEFIKKLDD---  753 (785)
Q Consensus       686 ~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~-------~~~~~~-~-~~~~~~l~~---  753 (785)
                            .+|.+.....    +..|   +|.|.+.|.|.|.|+|+++|..+..       .+.... . ......+.+   
T Consensus       411 ------~~P~i~~~~~----~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  477 (524)
T 2ec8_A          411 ------TKPEILTYDR----LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS  477 (524)
T ss_dssp             ------EEEEEEEEEC----CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEE
T ss_pred             ------cCCeEeeccc----CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEE
Confidence                  3444432111    3345   9999999999999999999877631       111110 0 000011111   


Q ss_pred             ceee-eeeceEEEEEEecccc
Q psy2775         754 LEVK-ERENAVLEVEVTSDKA  773 (785)
Q Consensus       754 ~~v~-~~~~~~~~c~~~~~~~  773 (785)
                      ..+. ..|.|.|+|.+.+..+
T Consensus       478 l~~~~~~d~G~Y~C~a~N~~G  498 (524)
T 2ec8_A          478 IDSSAFKHNGTVECKAYNDVG  498 (524)
T ss_dssp             ECCCSCCC-----CEEECSSC
T ss_pred             EEEEEccCCEEEEEEEEcCCC
Confidence            2222 4899999999987443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=2.8e-46  Score=421.15  Aligned_cols=439  Identities=15%  Similarity=0.183  Sum_probs=324.1

Q ss_pred             CCceEeccCCcEEEEEEEeccCCC---eEEEeECCEEcc---------------cceEE--E--eCCEEEEEEcccCCCC
Q psy2775         120 LHDVSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIK---------------DRQIT--S--EKNTHTLTLIQCSTKD  177 (785)
Q Consensus       120 ~~~~~~~~G~~v~l~C~~~g~p~~---~v~W~~~g~~~~---------------~~~~~--~--~~~~~~L~i~~~~~~d  177 (785)
                      +..+.+.+|+.+.|.|.+.+.|.+   .+.|+|++..+.               .....  .  ..+..+|.|.+++.+|
T Consensus         7 P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D   86 (585)
T 2ocw_A            7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   86 (585)
T ss_pred             cceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCccc
Confidence            456788999999999999887643   899999885321               01111  1  2345689999999999


Q ss_pred             cEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEE
Q psy2775         178 KGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSV  257 (785)
Q Consensus       178 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C  257 (785)
                      +|.|+|.|.|..+..+..+.|.|..                                +|.+...+....+.+|+.+.|.|
T Consensus        87 ~G~Y~C~~~n~~~~~~~~~~l~V~~--------------------------------~p~~~~~~~~~~v~~G~~v~l~C  134 (585)
T 2ocw_A           87 SGRYKCGLGINSRGLSFDVSLEVSQ--------------------------------GPGLLNDTKVYTVDLGRTVTINC  134 (585)
T ss_pred             CEEEEEEcccCCCCceEEEEEEEec--------------------------------CccccCCCccEEEEcCCCEEEEE
Confidence            9999999999888877778888863                                34555556677889999999999


Q ss_pred             EEccC-CCCeEEEEECCEEcc--------------cc--eEEEeC---CEEEEEEccCCCCCCeEEEEEEEeCCCceEEE
Q psy2775         258 QVGGE-PSPKVEWYKDGKLIK--------------DR--QITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA  317 (785)
Q Consensus       258 ~~~g~-p~~~v~W~~~~~~l~--------------~~--~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~  317 (785)
                      .+.+. |++.+.|++++....              ..  .+...+   +...|.|.+++.+|+|.|+|.|.|..|.....
T Consensus       135 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  214 (585)
T 2ocw_A          135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN  214 (585)
T ss_pred             EecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccce
Confidence            99865 456899999875321              01  111111   23479999999999999999999999988888


Q ss_pred             EEEEEeccccceeeeccceeEeeCccEEEEEEEcCCC---CeEEEE-ECCEE----cC--------CCCcEEEEEc--Cc
Q psy2775         318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK---ADVKWF-KDGQE----IK--------TSKKVTIEKK--GT  379 (785)
Q Consensus       318 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~v~W~-~~~~~----l~--------~~~~~~~~~~--~~  379 (785)
                      +.|.|...++.      ...+.+|+.+.|.|.+..+.   +.+.|+ ++|..    +.        ...++.+...  ..
T Consensus       215 ~~l~V~~~~p~------~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  288 (585)
T 2ocw_A          215 ADLQVLKPEPE------LVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG  288 (585)
T ss_pred             EEEEEccCCCc------eeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCc
Confidence            89988865433      34577899999999986654   688886 77732    11        1224444332  23


Q ss_pred             EEEEEEcCCCCCCceEEEEEEeccc--------eEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceE----
Q psy2775         380 IRKLLIRNISVHDEGEYTCSLPDQE--------TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALV----  446 (785)
Q Consensus       380 ~~~l~i~~~~~~d~G~Y~C~a~n~~--------~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i----  446 (785)
                      ...|.|.++..+|+|.|+|.|.|..        ....+.|. .+|.+...+....+.+|+.+.|.|.+.+ +.+.+    
T Consensus       289 ~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~  367 (585)
T 2ocw_A          289 SFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVN-EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWC  367 (585)
T ss_pred             EEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEe-cccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEE
Confidence            3369999999999999999999842        23334444 4566666777888999999999999987 56655    


Q ss_pred             EEEE--CCE--Eccc---------CCCEEEEEe--CcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccc
Q psy2775         447 KWYK--DGK--EIAF---------SENVTLSID--GKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEF  510 (785)
Q Consensus       447 ~W~~--~~~--~~~~---------~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~  510 (785)
                      +|++  +|.  .+..         ..++.+..+  .....|+|.+++.+|+|.|+|.| |. |.....+.|.|..++   
T Consensus       368 ~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~---  443 (585)
T 2ocw_A          368 LWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGE---  443 (585)
T ss_pred             EEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCc---
Confidence            7999  886  4432         234444432  23456999999999999999999 76 877888889987643   


Q ss_pred             cccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEe----cCC
Q psy2775         511 LTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK----ASP  586 (785)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~----g~P  586 (785)
                                                                      |.+.. +....+.+|++++|.|.+.    |.|
T Consensus       444 ------------------------------------------------p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p  474 (585)
T 2ocw_A          444 ------------------------------------------------PNLKV-PGNVTAVLGETLKVPCHFPCKFSSYE  474 (585)
T ss_pred             ------------------------------------------------ccccc-CCceeEecCCcEEEEEEecCCCCCCc
Confidence                                                            11111 2356789999999999997    778


Q ss_pred             CCceEEEeCCEEecCCCCe-----eEEe--eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE-EEEEEEe
Q psy2775         587 APSIVWFRNNKPLLSSPKK-----REIF--DGENIILELKEADSETDAGDYKVVATNELGSATHG-ARVTVDV  651 (785)
Q Consensus       587 ~p~v~W~~~~~~i~~~~~~-----~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~  651 (785)
                      .|.|+|+|+|..+......     .+..  .+...+|+|.++.. +|+|.|+|.|.|..|..... +.|.|+.
T Consensus       475 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~~l~V~~  546 (585)
T 2ocw_A          475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTR-ADEGWYWCGVKQGHFYGETAAVYVAVEE  546 (585)
T ss_pred             cEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCc-ccCeEEEEEeEeCCCccEEEEEEEEEEe
Confidence            8899999999887543221     1111  24457899999999 99999999999999976654 6777763

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=3.7e-46  Score=420.16  Aligned_cols=446  Identities=15%  Similarity=0.224  Sum_probs=327.0

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCC---eeEEEECCEEcc-----C---------CCCEEEeecCCccceEEEEEEcc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEP---DLLWYYNGEPLQ-----E---------TDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~---~i~W~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      +..|..+.+.+|++++|.|.+.+.|.+   .+.|+|++..+.     .         ..++.+....  .....+|+|.+
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~g~~~L~I~~   81 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP--ENGTFVVNIAQ   81 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecC--CCCEEEEEECC
Confidence            346788999999999999999887643   799999975321     1         1233333211  11225699999


Q ss_pred             cCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCCeEEEeECCEEcc--
Q psy2775          79 IKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSPKVEWYKDGKLIK--  155 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~~v~W~~~g~~~~--  155 (785)
                      ++.+|+|.|+|.|.|..+.....+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+. |.+.+.|++++....  
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~----~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~  157 (585)
T 2ocw_A           82 LSQDDSGRYKCGLGINSRGLSFDVSLEVS----QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL  157 (585)
T ss_pred             CCcccCEEEEEEcccCCCCceEEEEEEEe----cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceE
Confidence            99999999999999988877777888887    56778777788899999999999999864 456899999875421  


Q ss_pred             ------------cce--EEEeC---CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCc
Q psy2775         156 ------------DRQ--ITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPY  218 (785)
Q Consensus       156 ------------~~~--~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~  218 (785)
                                  ...  +...+   +..+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+              
T Consensus       158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~--------------  223 (585)
T 2ocw_A          158 VIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE--------------  223 (585)
T ss_pred             EecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC--------------
Confidence                        011  11111   23479999999999999999999999988888888886432              


Q ss_pred             cccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCC---CeEEEE-ECCEEcc-------------cceE
Q psy2775         219 VVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWY-KDGKLIK-------------DRQI  281 (785)
Q Consensus       219 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~---~~v~W~-~~~~~l~-------------~~~~  281 (785)
                                       |.      ...+.+|+.+.|.|.+ +.+.   +.+.|+ ++|....             ...+
T Consensus       224 -----------------p~------~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~  279 (585)
T 2ocw_A          224 -----------------PE------LVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI  279 (585)
T ss_pred             -----------------Cc------eeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCce
Confidence                             11      2346789999999998 4443   678897 7773211             1111


Q ss_pred             EEe----CCEEEEEEccCCCCCCeEEEEEEEeCCCceE----EEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-
Q psy2775         282 TSE----KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE----SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-  352 (785)
Q Consensus       282 ~~~----~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~----~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-  352 (785)
                      ...    .+...|.|.++..+|+|.|+|.|.|..+...    ..+.|.|.. ++.+...+....+.+|+.+.|.|.+.+ 
T Consensus       280 ~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~G~~v~l~C~~~~~  358 (585)
T 2ocw_A          280 LLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE-ESTIPRSPTVVKGVAGSSVAVLCPYNRK  358 (585)
T ss_pred             EeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEec-ccccccCCcceEEEeCCcEEEEEecCCC
Confidence            111    3344899999999999999999999633331    677888886 445555567778899999999999987 


Q ss_pred             CCCeE----EEEE--CCE--EcCC---------CCcEEEEE--cCcEEEEEEcCCCCCCceEEEEEEeccce----EEEE
Q psy2775         353 DKADV----KWFK--DGQ--EIKT---------SKKVTIEK--KGTIRKLLIRNISVHDEGEYTCSLPDQET----SAEL  409 (785)
Q Consensus       353 ~~~~v----~W~~--~~~--~l~~---------~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~----~~~~  409 (785)
                      +.+.+    +|++  +|.  .+..         ..++.+..  ......|.|.++..+|+|.|+|.| |..+    ...+
T Consensus       359 p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l  437 (585)
T 2ocw_A          359 ESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEI  437 (585)
T ss_pred             CCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEE
Confidence            55665    7999  886  4432         22444432  223345999999999999999999 6543    4556


Q ss_pred             EEEecCCcccccCCCeEEecCCcEEEEEEEe----C-CCceEEEEECCEEcccCCC-------EEEEEeCcEEEEEEccC
Q psy2775         410 NVVELPPEISVPLQDVKVSRDEKASFEIELT----K-GDALVKWYKDGKEIAFSEN-------VTLSIDGKKQKLIIFSA  477 (785)
Q Consensus       410 ~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~----~-~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~~~L~i~~~  477 (785)
                      .|...+|.+.. +....+.+|+.++|.|.+.    + +.+.|.|+++|..+.....       ..+..++....|+|.++
T Consensus       438 ~V~~~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  516 (585)
T 2ocw_A          438 KIIEGEPNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV  516 (585)
T ss_pred             EEecCcccccc-CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCC
Confidence            66665666554 5677899999999999996    3 4667999999988754321       12222344579999999


Q ss_pred             CCCCcEEEEEEEeec-Ccce-eEEEEEEEcCcc
Q psy2775         478 GLEDAGEYSCRVGDT-GDKE-SKATLTVEAPAV  508 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~~~-~~~~l~V~~~~~  508 (785)
                      ..+|+|.|+|.|.|. |... ..+.|.|..++.
T Consensus       517 ~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~  549 (585)
T 2ocw_A          517 TRADEGWYWCGVKQGHFYGETAAVYVAVEERKA  549 (585)
T ss_pred             CcccCeEEEEEeEeCCCccEEEEEEEEEEeeee
Confidence            999999999999998 6554 448999998863

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-47  Score=417.74  Aligned_cols=426  Identities=14%  Similarity=0.165  Sum_probs=285.9

Q ss_pred             ceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce-EE-EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775         122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-IT-SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  199 (785)
Q Consensus       122 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~-~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  199 (785)
                      .+++.+|+.++|.|.+.+.|...+.|++++..+.... +. ......+|.|.+++.+|+|.|+|.|.|..+.....+.|.
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~  136 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS  136 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEE
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEE
Confidence            6889999999999999988888999999998765432 11 112345699999999999999999999988777767776


Q ss_pred             eecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccc
Q psy2775         200 VDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR  279 (785)
Q Consensus       200 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~  279 (785)
                      |....                                 +...........|+...|.|.+.|+|.|.|+|++++..+...
T Consensus       137 v~~~~---------------------------------~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~  183 (527)
T 3qs9_E          137 IRNTL---------------------------------LYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESC  183 (527)
T ss_dssp             EC--------------------------------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------
T ss_pred             ECCce---------------------------------eeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccc
Confidence            64110                                 001111122344667789999999999999999988765422


Q ss_pred             eEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEE-EEEEEeccccceeeeccceeEeeCccEEEEEEEc-C-CCCe
Q psy2775         280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT-S-DKAD  356 (785)
Q Consensus       280 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~-~~~~  356 (785)
                      .. ............+..+|+|.|+|.|.|..|..... +.|.|...+..   .+....+.+|+.+.|.|.+. + |.+.
T Consensus       184 ~~-~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~  259 (527)
T 3qs9_E          184 KE-ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFG  259 (527)
T ss_dssp             -------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCC
T ss_pred             cc-cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeE
Confidence            11 11111122334456889999999999999887655 67777654332   44567889999999999996 5 6789


Q ss_pred             EEEEECCEEcCCCCcEEEE--EcC----cEEEEEEcCCCCCCceEEEEEEecc-ceEEEEEEEecCCcccccC--CCeEE
Q psy2775         357 VKWFKDGQEIKTSKKVTIE--KKG----TIRKLLIRNISVHDEGEYTCSLPDQ-ETSAELNVVELPPEISVPL--QDVKV  427 (785)
Q Consensus       357 v~W~~~~~~l~~~~~~~~~--~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~-~~~~~~~v~~~~~~~~~~~--~~~~v  427 (785)
                      ++|+++|..+.....+...  ..+    ....|.|.++..+|+|.|+|.|.|. .....+.|.. +|.+...+  ....+
T Consensus       260 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~-~p~i~~~~~~~~~~v  338 (527)
T 3qs9_E          260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVE-KGFINATNSSEDYEI  338 (527)
T ss_dssp             EEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC---CEEECCCSCCEECC
T ss_pred             EEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEc-cCccccccCcccEEE
Confidence            9999999887655433221  111    1245999999999999999999997 2233344443 33333322  34567


Q ss_pred             ecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEc
Q psy2775         428 SRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEA  505 (785)
Q Consensus       428 ~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~  505 (785)
                      .+|+.+.|.|.+.+ |.|.|+|+|+|..+....+...    ....|.|.+++.+|+|.|+|.|.|. |....++.|.|..
T Consensus       339 ~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~  414 (527)
T 3qs9_E          339 DQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR  414 (527)
T ss_dssp             CTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCS----SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C
T ss_pred             cCCCeEEEEEEEEecCCCEEEEEECCEECcCCccccc----CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            78999999999998 7889999999999866554221    2246999999999999999999998 7778888888886


Q ss_pred             CcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC
Q psy2775         506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS  585 (785)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~  585 (785)
                      +                                                    |.|....      .|  .+|.|.+.|+
T Consensus       415 ~----------------------------------------------------P~i~~~~------~~--~~l~C~a~g~  434 (527)
T 3qs9_E          415 K----------------------------------------------------PQVLAEA------SA--SQASCFSDGY  434 (527)
T ss_dssp             C----------------------------------------------------CEEEECC------CC--E---EEEECS
T ss_pred             C----------------------------------------------------CeEEEeC------CC--CEEEEEEEEE
Confidence            6                                                    3333221      12  3589999999


Q ss_pred             CCCceEEEeCCEEecCCCC-----------eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         586 PAPSIVWFRNNKPLLSSPK-----------KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       586 P~p~v~W~~~~~~i~~~~~-----------~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      |.|.|+|++++........           ...........++|.-... +|+|.|+|.|.|..|....++.|.|.
T Consensus       435 P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~d~G~Y~C~A~N~~G~~~~~~~L~V~  509 (527)
T 3qs9_E          435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA-IKGFLVKCCAYNSLGTSCETILLNSP  509 (527)
T ss_dssp             SCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCS-SCSCEEEEEEECSSCEEEEEEEC---
T ss_pred             cCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEc-CCCEEEEEEEEeCCCCceeEEEEecC
Confidence            9999999998765422111           0011111222333333334 79999999999999999998888775

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=4.4e-46  Score=413.12  Aligned_cols=445  Identities=16%  Similarity=0.204  Sum_probs=309.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--Ecc------------CCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--PLQ------------ETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +...|..+.+.+|++++|.|.+.+.|.+.+.|++++.  .+.            ...++.....+    ...+|+|.+++
T Consensus         3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~   78 (523)
T 2rcj_C            3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSG----TSASLAISGLE   78 (523)
T ss_pred             ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCC----CEEEEEECCCC
Confidence            3455778999999999999999988899999999752  110            01233322111    22569999999


Q ss_pred             CCCCeEEEEEEEcCCee---EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCC--eEEEeECCEEcc
Q psy2775          81 KREEGVYTVVAKNREGE---AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP--KVEWYKDGKLIK  155 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~---~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~--~v~W~~~g~~~~  155 (785)
                      .+|+|.|+|.|.|..+.   ....+.|.|......+|.+...+....+.+|+.+.|.|.+.|.|++  .|+|++||..+.
T Consensus        79 ~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (523)
T 2rcj_C           79 AEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK  158 (523)
T ss_pred             hhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCC
Confidence            99999999999997653   2234567775433466777666666667789999999999987654  999999999886


Q ss_pred             cceEEE-----eCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCcccccccee
Q psy2775         156 DRQITS-----EKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL  226 (785)
Q Consensus       156 ~~~~~~-----~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (785)
                      ......     .++    ...|.|.++..+|+|.|+|.|.|..+.....+.+.+...                       
T Consensus       159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~-----------------------  215 (523)
T 2rcj_C          159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSA-----------------------  215 (523)
T ss_pred             CceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCC-----------------------
Confidence            543211     111    246999999999999999999999876555444332111                       


Q ss_pred             eecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccC-CCC-eEEEEECCEEcccc---eEEEeCC----EEEEEEccCCC
Q psy2775         227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGKLIKDR---QITSEKN----THTLTLIQCST  297 (785)
Q Consensus       227 ~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~---~~~~~~~----~~~l~i~~~~~  297 (785)
                           ...+|.+........+.+|+.+.|.|.+.|. |.+ .|+|+++|..+...   .....++    .+.|.|.++..
T Consensus       216 -----~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~  290 (523)
T 2rcj_C          216 -----STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL  290 (523)
T ss_pred             -----CCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhc
Confidence                 0133455433334456789999999999886 777 89999999875421   1111112    35899999999


Q ss_pred             CCCeEEEEEEEeCCCceEEEEEEEEeccccceeeecccee-EeeCccEEEEEEEcC-CC----CeEEEEECCEEcCCCCc
Q psy2775         298 KDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVTS-DK----ADVKWFKDGQEIKTSKK  371 (785)
Q Consensus       298 ~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~-~~----~~v~W~~~~~~l~~~~~  371 (785)
                      +| |.|+|.|.|..|.......|.+...|..+...+.... +.+|+.+.|.|.+.+ ++    +.++|+++|..+.....
T Consensus       291 ~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~  369 (523)
T 2rcj_C          291 GT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKT  369 (523)
T ss_pred             CC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCcc
Confidence            99 9999999999998777777776654444343333333 788999999999987 32    48999999998875542


Q ss_pred             EE--EEEcCc---EEEEEEcCCCCCCceEEEEEEeccceEEE----EEE---EecCCcccccCCCeEEecCCcEEEEEEE
Q psy2775         372 VT--IEKKGT---IRKLLIRNISVHDEGEYTCSLPDQETSAE----LNV---VELPPEISVPLQDVKVSRDEKASFEIEL  439 (785)
Q Consensus       372 ~~--~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~----~~v---~~~~~~~~~~~~~~~v~~g~~~~l~C~~  439 (785)
                      ..  ...++.   .+.|.|.++..+|+|.|+|.|.|..+...    +.+   ...+|.+...+.......|+.++|.|.+
T Consensus       370 ~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~  449 (523)
T 2rcj_C          370 KPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLV  449 (523)
T ss_pred             CCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEEEeCCChHHccCCceEEEEEE
Confidence            21  122222   24589999999999999999998654332    222   2345555443222222234459999999


Q ss_pred             eC-CCc--eEEEEECCEEcccCCCEEE--EEeCc---EEEEEEccCCCCCcEEEEEEEeec
Q psy2775         440 TK-GDA--LVKWYKDGKEIAFSENVTL--SIDGK---KQKLIIFSAGLEDAGEYSCRVGDT  492 (785)
Q Consensus       440 ~~-~~~--~i~W~~~~~~~~~~~~~~~--~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~  492 (785)
                      .+ +++  .++|+++|.++........  ..++.   .+.|.+.....+|+|.|+|.|.|.
T Consensus       450 ~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~  510 (523)
T 2rcj_C          450 KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE  510 (523)
T ss_pred             EeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcC
Confidence            98 444  8999999999864432222  22332   245667666678899999999996

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=411.36  Aligned_cols=426  Identities=12%  Similarity=0.100  Sum_probs=285.6

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      .++|.+|++++|.|.+.+.|...+.|++++..+.....+..  +.   ....+|.|.+++.+|+|.|+|.|.|..+....
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~--~~---r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~  131 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL--QN---RGVVSMVILKMTETQAGEYLLFIQSEATNYTI  131 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC----------CEEEEEESSCCSSSCSEEEEEEEC--CEEEE
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC--Cc---ceEEEEEECcCChhhCeeEEEEEEeccccEEE
Confidence            89999999999999998888899999999988765544422  11   12245999999999999999999999888777


Q ss_pred             EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEE
Q psy2775         101 DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR  180 (785)
Q Consensus       101 ~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  180 (785)
                      .+.|.|.     ++.+...........|+.+.|.|.+.|+|.|.|+|++++..+..... ............+..+|+|.
T Consensus       132 ~~~v~v~-----~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~G~  205 (527)
T 3qs9_E          132 LFTVSIR-----NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE-ESPAVVKKEEKVLHELFGTD  205 (527)
T ss_dssp             EEEEEEC----------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSC
T ss_pred             EEEEEEC-----CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc-cCCcEEEEeeeeccccCCEE
Confidence            7777664     11121111223345677889999999999999999998876542211 11111122334456899999


Q ss_pred             EEEEEEcCCeeEEEE-EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEE
Q psy2775         181 YSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV  259 (785)
Q Consensus       181 Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~  259 (785)
                      |+|.|.|..|..... +.|.|...+                                .+  ++....+.+|+.+.|.|.+
T Consensus       206 Y~C~A~N~~G~~~~~~~~l~V~~~p--------------------------------~~--~p~~~~v~~G~~v~L~C~~  251 (527)
T 3qs9_E          206 IRCCARNELGRECTRLFTIDLNQTP--------------------------------QT--TLPQLFLKVGEPLWIRCKA  251 (527)
T ss_dssp             EEEEEECSSCEEEEECEEEESSSCC--------------------------------CC--SCCEEEECTTSCEEEEEEE
T ss_pred             EEEEEEeCCCcccceEEEEEEeccC--------------------------------cc--CCCceEEeCCCeEEEEEEE
Confidence            999999999977664 667665322                                22  2335678899999999999


Q ss_pred             c-cCCCCeEEEEECCEEcccce-E---EE-----eCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEEeccccce
Q psy2775         260 G-GEPSPKVEWYKDGKLIKDRQ-I---TS-----EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEF  329 (785)
Q Consensus       260 ~-g~p~~~v~W~~~~~~l~~~~-~---~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~  329 (785)
                      . |.|.+.|+|+++|..+.... .   ..     .....+|.|.++..+|+|.|+|.|.|.   ...++.|.|...+...
T Consensus       252 ~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~  328 (527)
T 3qs9_E          252 VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFIN  328 (527)
T ss_dssp             EESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEE
T ss_pred             ccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccc
Confidence            6 89999999999998776321 1   11     112356999999999999999999997   5667888887644322


Q ss_pred             eee-ccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccceEE
Q psy2775         330 IKK-LDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSA  407 (785)
Q Consensus       330 ~~~-~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~  407 (785)
                      ... .....+.+|+.+.|.|.+.+ |.|.++|+++|..+....+...  .+  ..|.|.++..+|+|.|+|.|.|..+..
T Consensus       329 ~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~A~N~~g~~  404 (527)
T 3qs9_E          329 ATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD--NG--YSISKFCNHKHQPGEYIFHAENDDAQF  404 (527)
T ss_dssp             CCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCS--SS--SEEEEECCCTTCCSCEEEEEEETTEEE
T ss_pred             cccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccccc--CC--cEEEEecCCcccCEEEEEEEEeCCCcE
Confidence            211 23466788999999999988 7889999999999866544211  12  249999999999999999999987755


Q ss_pred             EEEE---EecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCC-----------EEEEEeCcEEEE
Q psy2775         408 ELNV---VELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSEN-----------VTLSIDGKKQKL  472 (785)
Q Consensus       408 ~~~v---~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~-----------~~~~~~~~~~~L  472 (785)
                      ...+   +..+|.+...+.        ...|.|.+.+ |.|.|.|++++........           ...........+
T Consensus       405 ~~~~~L~V~~~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  476 (527)
T 3qs9_E          405 TKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS  476 (527)
T ss_dssp             EEEEEEC--CCCEEEECCC--------CE---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEE
T ss_pred             EEEEEEEEecCCeEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEE
Confidence            4432   234555544331        2367999998 7889999988654421110           001111122334


Q ss_pred             EEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcC
Q psy2775         473 IIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAP  506 (785)
Q Consensus       473 ~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~  506 (785)
                      ++.....+|+|.|+|.|.|. |.....+.|.|.++
T Consensus       477 ~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p  511 (527)
T 3qs9_E          477 TLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP  511 (527)
T ss_dssp             ECCCCCSSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred             EEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence            44444467999999999998 98999999988765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.5e-47  Score=413.74  Aligned_cols=411  Identities=17%  Similarity=0.168  Sum_probs=292.2

Q ss_pred             cCCCceEeccCCcEEEEEEEeccCCCeE-----EEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeE
Q psy2775         118 EPLHDVSITEGESAVLSVQVGGEPSPKV-----EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV  192 (785)
Q Consensus       118 ~~~~~~~~~~G~~v~l~C~~~g~p~~~v-----~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  192 (785)
                      ..+....+.+|+.+.|.|.+.| |.+.+     .|+|++..+..      .....|.|.+++. |+| |+|.|.+..+..
T Consensus         4 ~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~------~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~   74 (450)
T 1z7z_I            4 VSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG------NNRKVYELSNVQE-DSQ-PMCYSNCPDGQS   74 (450)
T ss_dssp             EESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST------TTEEEEEEEEECS-CBC-CEEEEEETTEEE
T ss_pred             cCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC------CCceEEEEEeccc-CCe-eEEEEeCCCCcc
Confidence            3456778899999999999998 88888     99998875532      2345899999987 999 999998877777


Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCC---eEEE
Q psy2775         193 ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP---KVEW  269 (785)
Q Consensus       193 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~---~v~W  269 (785)
                      +..+.|.|...+                               ..+...+....+.+|+.+.|.|.+.+.|++   .|.|
T Consensus        75 ~~~~~l~V~~~P-------------------------------~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W  123 (450)
T 1z7z_I           75 TAKTFLTVYWTP-------------------------------ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL  123 (450)
T ss_dssp             EEECEEEEEBCC-------------------------------SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEE
T ss_pred             eeEEEEEEEeCC-------------------------------CcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEE
Confidence            778888887422                               222244556778899999999999998887   9999


Q ss_pred             EECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceE--------EEEEEEEeccccceeeeccceeEeeC
Q psy2775         270 YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE--------SAANLNVDQGKAEFIKKLDDLEVKER  341 (785)
Q Consensus       270 ~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~--------~~~~l~v~~~~~~~~~~~~~~~~~~g  341 (785)
                      +++|..+.............|.|.++..+|+|.|+|.|.|..|...        ....|.|...+........+..+.+|
T Consensus       124 ~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G  203 (450)
T 1z7z_I          124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD  203 (450)
T ss_dssp             EETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETT
T ss_pred             eeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeC
Confidence            9999988633322233456899999999999999999999866422        22344554321111111122678899


Q ss_pred             ccEEEEEEEcCC----CCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCce--EEEEEEeccceE----EEEEE
Q psy2775         342 ENAVLEVEVTSD----KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEG--EYTCSLPDQETS----AELNV  411 (785)
Q Consensus       342 ~~~~l~C~~~~~----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~a~n~~~~----~~~~v  411 (785)
                      +.+.|.|.+.+.    .+.++|++++..+..  +.....++....+.+ ++..+|+|  .|+|.|.|..+.    ..+.|
T Consensus       204 ~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V  280 (450)
T 1z7z_I          204 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTI  280 (450)
T ss_dssp             SEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEE
Confidence            999999999874    579999999998875  222222221111222 77899999  999999987554    34555


Q ss_pred             EecC-CcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEe
Q psy2775         412 VELP-PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG  490 (785)
Q Consensus       412 ~~~~-~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  490 (785)
                      ...+ |.+.  .....+.+|+.++|.|.+. +.+.++|  +|..+..        .+....|.|..+..+|+|.|+|.|.
T Consensus       281 ~~~~~p~i~--~~~~~v~~G~~v~l~C~~~-p~p~i~W--~g~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~  347 (450)
T 1z7z_I          281 YSFPAPNVI--LTKPEVSEGTEVTVKCEAH-PRAKVTL--NGVPAQP--------LGPRAQLLLKATPEDNGRSFSCSAT  347 (450)
T ss_dssp             ECCCCCEEE--ESCSEEETTCEEEEEEEC---------------------------CCCCCEEEECCGGGTTCEEEEEEE
T ss_pred             ecCCCCeEe--cCCeeEeCCCcEEEEEecC-CCCEeEE--CCEEcCC--------CCceEEEEEecCcccCCceEEEEEE
Confidence            5433 3333  3355789999999999998 8889999  7776621        1222469999999999999999999


Q ss_pred             ec-C-c---ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeee-
Q psy2775         491 DT-G-D---KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER-  564 (785)
Q Consensus       491 n~-g-~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~-  564 (785)
                      |. + .   ...++.|.|..+|.                                                    +... 
T Consensus       348 n~~~g~~~~~~~~~~l~V~~~P~----------------------------------------------------~~~~~  375 (450)
T 1z7z_I          348 LEVAGQLIHKNQTRELRVLYGPR----------------------------------------------------LDERD  375 (450)
T ss_dssp             EEETTEEEEEEEEEECEEEEEEE----------------------------------------------------CCSTT
T ss_pred             cCCCCcccccceeEEEEEecCCc----------------------------------------------------eeecc
Confidence            75 4 2   23567788776542                                                    2211 


Q ss_pred             -eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         565 -FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       565 -~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                       +.+..+.+|+.++|.|.+.|+|.|.|+|+|+|..+..+..        .  |   +++. +|+|.|+|.|.|..|....
T Consensus       376 ~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~--------~--~---~v~~-~d~G~Y~C~a~N~~G~~~~  441 (450)
T 1z7z_I          376 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE--------S--V---TVTR-DLEGTYLCRARSTQGEVTR  441 (450)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS--------C--E---ECCG-GGCEEEEEEEEETTEEEEE
T ss_pred             CCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC--------e--E---eEeh-hhCeEEEEEEEeCCCceeE
Confidence             1356788999999999999999999999999985543321        1  2   4677 9999999999999999999


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      ++.|.|+
T Consensus       442 ~~~l~V~  448 (450)
T 1z7z_I          442 EVTVNVL  448 (450)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999886

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=7.7e-47  Score=411.03  Aligned_cols=415  Identities=15%  Similarity=0.182  Sum_probs=302.4

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCee-----EEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDL-----LWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      +|...|..+.+.+|++++|.|.+.| |.+.+     .|++++..+.. .+.            ..|.|.+++. |+| |+
T Consensus         1 ~i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-~~~------------~~l~i~~v~~-d~g-Y~   64 (450)
T 1z7z_I            1 QTSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-NNR------------KVYELSNVQE-DSQ-PM   64 (450)
T ss_dssp             CCEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-TTE------------EEEEEEEECS-CBC-CE
T ss_pred             CcccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-CCc------------eEEEEEeccc-CCe-eE
Confidence            3567789999999999999999998 88888     99988764432 111            3599999987 999 99


Q ss_pred             EEEEcCCeeEEEEeeEEEeCCCCCCCcee-cCCCceEeccCCcEEEEEEEeccCCC---eEEEeECCEEcccceEEEeCC
Q psy2775          89 VVAKNREGEAKMDIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKDRQITSEKN  164 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~~~~~~p~i~-~~~~~~~~~~G~~v~l~C~~~g~p~~---~v~W~~~g~~~~~~~~~~~~~  164 (785)
                      |.|.+..+..+..+.|.|..    +|.+. ..+....+.+|+.+.|.|.+.|.|++   .|+|+|||..+..........
T Consensus        65 C~a~~~~~~~~~~~~l~V~~----~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~  140 (450)
T 1z7z_I           65 CYSNCPDGQSTAKTFLTVYW----TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA  140 (450)
T ss_dssp             EEEEETTEEEEEECEEEEEB----CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTE
T ss_pred             EEEeCCCCcceeEEEEEEEe----CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccccccc
Confidence            99988777777788888874    44444 55566789999999999999998887   999999999887554333444


Q ss_pred             EEEEEEcccCCCCcEEEEEEEEcCCeeEE--------EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCC
Q psy2775         165 THTLTLIQCSTKDKGRYSVKVTNKEGTVE--------SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP  236 (785)
Q Consensus       165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--------~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  236 (785)
                      ..+|.|.+++.+|+|.|+|.|.|..|...        ....+.|...+                            ..+|
T Consensus       141 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~----------------------------~~~p  192 (450)
T 1z7z_I          141 EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP----------------------------ATPP  192 (450)
T ss_dssp             EEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCC----------------------------SSCC
T ss_pred             ceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccC----------------------------CCCC
Confidence            56899999999999999999999866322        12333333210                            1234


Q ss_pred             eeeecCCcceeCCCCeEEEEEEEccC-C--CCeEEEEECCEEcccceEEEeCCEEEEE-EccCCCCCCe--EEEEEEEeC
Q psy2775         237 SILEPLHDVSITEGESAVLSVQVGGE-P--SPKVEWYKDGKLIKDRQITSEKNTHTLT-LIQCSTKDKG--RYSVKVTNK  310 (785)
Q Consensus       237 ~~~~~~~~~~~~~G~~~~l~C~~~g~-p--~~~v~W~~~~~~l~~~~~~~~~~~~~l~-i~~~~~~d~G--~Y~C~~~n~  310 (785)
                      .+..+   ..+.+|+.+.|.|.+.|. |  .+.+.|+++|..+.. .+........+. ..++..+|+|  .|+|.+.|.
T Consensus       193 ~~~~~---~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~  268 (450)
T 1z7z_I          193 QLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG  268 (450)
T ss_dssp             EEECC---SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC-EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEET
T ss_pred             EecCc---eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc-eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccC
Confidence            44332   577899999999999998 6  689999999998875 333333332222 2277899999  999999999


Q ss_pred             CCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcCCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCC
Q psy2775         311 EGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISV  390 (785)
Q Consensus       311 ~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~  390 (785)
                      .|.....+.|.|...++ .........+.+|+.++|.|.+. |.+.++|  +|..+...        +....|.|.++..
T Consensus       269 ~g~~~~~~~l~V~~~~~-p~i~~~~~~v~~G~~v~l~C~~~-p~p~i~W--~g~~~~~~--------~~~~~L~i~~~~~  336 (450)
T 1z7z_I          269 NQSQETLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEAH-PRAKVTL--NGVPAQPL--------GPRAQLLLKATPE  336 (450)
T ss_dssp             TEEEEEEEEEEEECCCC-CEEEESCSEEETTCEEEEEEEC---------------------------CCCCCEEEECCGG
T ss_pred             CccEEEEEEEEEecCCC-CeEecCCeeEeCCCcEEEEEecC-CCCEeEE--CCEEcCCC--------CceEEEEEecCcc
Confidence            99888888999887444 22234456899999999999998 8899999  77766211        1222499999999


Q ss_pred             CCceEEEEEEeccce--------EEEEEEEecCCcccccC--CCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCC
Q psy2775         391 HDEGEYTCSLPDQET--------SAELNVVELPPEISVPL--QDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSE  459 (785)
Q Consensus       391 ~d~G~Y~C~a~n~~~--------~~~~~v~~~~~~~~~~~--~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~  459 (785)
                      +|+|.|+|.|.|..+        ...+.|.. +|.+...+  ....+.+|+.++|.|.+.+ |.|.+.|+|+|..+...+
T Consensus       337 ~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~-~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g  415 (450)
T 1z7z_I          337 DNGRSFSCSATLEVAGQLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG  415 (450)
T ss_dssp             GTTCEEEEEEEEEETTEEEEEEEEEECEEEE-EEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT
T ss_pred             cCCceEEEEEEcCCCCcccccceeEEEEEec-CCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCC
Confidence            999999999986322        23344443 44444433  5668899999999999998 888999999988543322


Q ss_pred             CEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcC
Q psy2775         460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAP  506 (785)
Q Consensus       460 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~  506 (785)
                      .          .+   .++.+|+|.|+|.|.|. |....++.|.|..+
T Consensus       416 ~----------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          416 E----------SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             S----------CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             C----------eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            1          12   57789999999999998 88889999999763

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=409.73  Aligned_cols=440  Identities=15%  Similarity=0.198  Sum_probs=295.4

Q ss_pred             CCcceeCCCCeEEEEEEEccCCCCeEEEEECC--EEcc-------------cceE--EEeCCEEEEEEccCCCCCCeEEE
Q psy2775         242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDG--KLIK-------------DRQI--TSEKNTHTLTLIQCSTKDKGRYS  304 (785)
Q Consensus       242 ~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~--~~l~-------------~~~~--~~~~~~~~l~i~~~~~~d~G~Y~  304 (785)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++  ..+.             ..++  ........|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (523)
T 2rcj_C            7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY   86 (523)
T ss_pred             CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence            44667889999999999999999999999974  2111             0111  12234568999999999999999


Q ss_pred             EEEEeCCCce---EEEEEEEEec---cccceeeeccceeEeeCccEEEEEEEcC-CC--CeEEEEECCEEcCCCCcEEE-
Q psy2775         305 VKVTNKEGTV---ESAANLNVDQ---GKAEFIKKLDDLEVKERENAVLEVEVTS-DK--ADVKWFKDGQEIKTSKKVTI-  374 (785)
Q Consensus       305 C~~~n~~g~~---~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~--~~v~W~~~~~~l~~~~~~~~-  374 (785)
                      |.|.|..|..   ...+.|.|..   .+|.+...+....+.+|+.+.|.|.+.+ ++  +.++|+++|..+..+..... 
T Consensus        87 C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  166 (523)
T 2rcj_C           87 CASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKP  166 (523)
T ss_pred             EEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccc
Confidence            9999986532   2346777742   2344444444556678999999999987 33  39999999998865543221 


Q ss_pred             --EEcCc---EEEEEEcCCCCCCceEEEEEEeccceEEEEEEE-------ecCCcccccCCCeEEecCCcEEEEEEEeC-
Q psy2775         375 --EKKGT---IRKLLIRNISVHDEGEYTCSLPDQETSAELNVV-------ELPPEISVPLQDVKVSRDEKASFEIELTK-  441 (785)
Q Consensus       375 --~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~v~-------~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-  441 (785)
                        ..++.   .+.|.|.++..+|+|.|+|.|.|..+.....+.       ..+|.+........+.+|+.+.|.|.+.+ 
T Consensus       167 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~  246 (523)
T 2rcj_C          167 SKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  246 (523)
T ss_pred             cccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEece
Confidence              12222   236999999999999999999997665443332       23444443333345678999999999987 


Q ss_pred             -CCc-eEEEEECCEEcccCCCEEEEEe-C---cEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccC
Q psy2775         442 -GDA-LVKWYKDGKEIAFSENVTLSID-G---KKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKL  514 (785)
Q Consensus       442 -~~~-~i~W~~~~~~~~~~~~~~~~~~-~---~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~  514 (785)
                       |.+ .|+|++++..+........... +   ..+.|.|.++..+| |.|+|.|.|. |.......|.|...|       
T Consensus       247 ~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P-------  318 (523)
T 2rcj_C          247 FPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLP-------  318 (523)
T ss_pred             eCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCc-------
Confidence             445 7999999987532211111111 1   13589999999999 9999999997 766656666554321       


Q ss_pred             CCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeee-eeeecCeEEEEEEEecCCC----Cc
Q psy2775         515 PSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK-TVKEKGTIRLMAKVKASPA----PS  589 (785)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~-~v~~g~~v~l~C~~~g~P~----p~  589 (785)
                                                                  +.++..+... .+.+|+.++|.|.+.|.|+    +.
T Consensus       319 --------------------------------------------~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~  354 (523)
T 2rcj_C          319 --------------------------------------------SVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVK  354 (523)
T ss_pred             --------------------------------------------eEEecCCCchhhcccCCceEEEEEEecccCCCCceE
Confidence                                                        1111122222 3788999999999999754    48


Q ss_pred             eEEEeCCEEecCCCCeeEE-eeCC----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccc
Q psy2775         590 IVWFRNNKPLLSSPKKREI-FDGE----NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDI  664 (785)
Q Consensus       590 v~W~~~~~~i~~~~~~~~~-~~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~  664 (785)
                      |+|+|+|..+......... ..++    .+.|.|.++.. +|+|.|+|.|.|..|....+..|.+..             
T Consensus       355 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~~~~~~~~-------------  420 (523)
T 2rcj_C          355 FNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNW-LDGKEYKCKVSNKALPAPIEKTISKAK-------------  420 (523)
T ss_pred             EEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHh-cCCCeEEEEEeCCCCCCceeEEEEccc-------------
Confidence            9999999998765432221 1222    24699999988 999999999999988765554444310             


Q ss_pred             cccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECCEEeeeccccc
Q psy2775         665 DRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNGTVIVPSKRVK  742 (785)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~~~~~~~  742 (785)
                                              .+..+|.+.........+..|+ ++|.|.+.|.|+|  .|+|++||..+.......
T Consensus       421 ------------------------~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  475 (523)
T 2rcj_C          421 ------------------------GQPREPQVYTLPPSREEMTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTP  475 (523)
T ss_pred             ------------------------CCCCCCEEEEeCCChHHccCCc-eEEEEEEEeeECCCCEEEEEECCEECCCeeecc
Confidence                                    1224455443222222234454 9999999998777  899999999987554322


Q ss_pred             cc--hh--h--hcccccceeeeeeceEEEEEEeccc
Q psy2775         743 GK--AE--F--IKKLDDLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       743 ~~--~~--~--~~~l~~~~v~~~~~~~~~c~~~~~~  772 (785)
                      ..  .+  +  ...|.+......|.|.|+|.+.++.
T Consensus       476 ~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~  511 (523)
T 2rcj_C          476 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  511 (523)
T ss_pred             ceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCC
Confidence            21  11  1  1122222223356899999999855

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=3.5e-43  Score=372.74  Aligned_cols=352  Identities=23%  Similarity=0.352  Sum_probs=265.5

Q ss_pred             CCCeeeecCCccee---CCCCeEEEEEEEccCCCCeEEEEECCEEcc---cceEEEeCCEEEEEEccC-CCCCCeEEEEE
Q psy2775         234 EKPSILEPLHDVSI---TEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC-STKDKGRYSVK  306 (785)
Q Consensus       234 ~~p~~~~~~~~~~~---~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~---~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~  306 (785)
                      .+|.|+..+....+   .+|+.+.|.|.+.|+|.|.|+|+++|..+.   ...+...++  .|.|.+. ..+|+|.|+|.
T Consensus         4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~C~   81 (384)
T 3kld_A            4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQCI   81 (384)
T ss_dssp             EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEEEE
T ss_pred             CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEEEE
Confidence            34667776666555   589999999999999999999999999986   223333333  5666665 78899999999


Q ss_pred             EEeCCCceEE-EEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEEEEcCcEEEE
Q psy2775         307 VTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGTIRKL  383 (785)
Q Consensus       307 ~~n~~g~~~~-~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l  383 (785)
                      |.|..|.... .+.|.+...+...........+.+|+.+.|.|....  +.+.+.|++++.++....+........  .|
T Consensus        82 A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~L  159 (384)
T 3kld_A           82 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NL  159 (384)
T ss_dssp             EEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTC--CE
T ss_pred             EEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCC--cE
Confidence            9999886543 356666543332233345577899999999997643  467999999999886555433322221  39


Q ss_pred             EEcCCCCCCceEEEEEEeccceEEE-------EEEE------ecCCccc-ccCCCeEEecCCcEEEEEEEeC-CCceEEE
Q psy2775         384 LIRNISVHDEGEYTCSLPDQETSAE-------LNVV------ELPPEIS-VPLQDVKVSRDEKASFEIELTK-GDALVKW  448 (785)
Q Consensus       384 ~i~~~~~~d~G~Y~C~a~n~~~~~~-------~~v~------~~~~~~~-~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W  448 (785)
                      .|.++..+|+|.|+|.|.|..+...       +.+.      ..+|.+. ..+....+.+|+.+.|.|.+.+ |.|.+.|
T Consensus       160 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W  239 (384)
T 3kld_A          160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILW  239 (384)
T ss_dssp             EESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEE
T ss_pred             EEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEE
Confidence            9999999999999999998654322       1111      1122222 2345667889999999999998 7889999


Q ss_pred             EEC-CEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCce
Q psy2775         449 YKD-GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA  526 (785)
Q Consensus       449 ~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  526 (785)
                      +++ +..+....  ..  ......|.|.+++.+|+|.|+|.|.|. |.....+.|.|..+                    
T Consensus       240 ~k~~~~~~~~~~--~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~--------------------  295 (384)
T 3kld_A          240 RRADGKPIARKA--RR--HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ--------------------  295 (384)
T ss_dssp             EETTCCCCCTTC--EE--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE--------------------
T ss_pred             EeCCCccccccc--ee--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC--------------------
Confidence            995 44443221  11  122347999999999999999999998 87788888888765                    


Q ss_pred             eEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee
Q psy2775         527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR  606 (785)
Q Consensus       527 ~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~  606 (785)
                                                      |.|...+.+..+.+|+++.|.|.+.|.|.|.|+|+|+|..+..+.+..
T Consensus       296 --------------------------------P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~  343 (384)
T 3kld_A          296 --------------------------------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQ  343 (384)
T ss_dssp             --------------------------------EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEE
T ss_pred             --------------------------------CccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEE
Confidence                                            555555667789999999999999999999999999999997766543


Q ss_pred             EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         607 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       607 ~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +  .+  .+|.|.++.. +|+|.|+|.|.|..|...+++.|.|.
T Consensus       344 ~--~~--~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          344 I--EQ--GTLNITIVNL-SDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             E--ET--TEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             E--eC--CEEEEeecCh-hhCEEEEEEEEeCCceEEeceEEEEe
Confidence            2  22  2699999999 99999999999999999999999985

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-41  Score=358.91  Aligned_cols=348  Identities=12%  Similarity=0.144  Sum_probs=236.6

Q ss_pred             eeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccce-EE-EeCCEEEEEEccCCCCCCeEEEEEEEeCCCceE
Q psy2775         238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-IT-SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE  315 (785)
Q Consensus       238 ~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  315 (785)
                      ++..+....+.+|+.+.|.|.+.+.|.+.|.|++++..+.... .. .......|.|.+++.+|+|.|+|.|.|..|...
T Consensus        51 ~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~  130 (423)
T 3qs7_E           51 TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT  130 (423)
T ss_dssp             -----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEE
T ss_pred             ceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEE
Confidence            3333447889999999999999999999999999998765211 11 122345799999999999999999999999888


Q ss_pred             EEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCC---cEEEEEcCcEEEEEEcCCCCC
Q psy2775         316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSK---KVTIEKKGTIRKLLIRNISVH  391 (785)
Q Consensus       316 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~---~~~~~~~~~~~~l~i~~~~~~  391 (785)
                      ..+.|.|...+ .+ ....+.....|+.+.|.|.+.+ |.|.++|++++..+....   ...+.....    .   +...
T Consensus       131 ~~~~l~V~~~p-~~-~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~----~---l~~~  201 (423)
T 3qs7_E          131 ILFTVSIRNTL-LY-TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK----V---LHEL  201 (423)
T ss_dssp             EEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCS----E---ECCC
T ss_pred             EEEEEEEecCc-cc-cccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccce----E---Eecc
Confidence            88888887533 22 2223344566888899999988 789999999887553211   011111111    1   1578


Q ss_pred             CceEEEEEEeccceEEEEE--EEecCCcccccCCCeEEecCCcEEEEEEEeC-C-CceEEEEECCEEcccCCCEEEEE--
Q psy2775         392 DEGEYTCSLPDQETSAELN--VVELPPEISVPLQDVKVSRDEKASFEIELTK-G-DALVKWYKDGKEIAFSENVTLSI--  465 (785)
Q Consensus       392 d~G~Y~C~a~n~~~~~~~~--v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~-~~~i~W~~~~~~~~~~~~~~~~~--  465 (785)
                      |+|.|+|.|.|..+.....  .+........++....+.+|+.+.|.|.+.+ + .+.|+|++++..+..........  
T Consensus       202 d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~  281 (423)
T 3qs7_E          202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS  281 (423)
T ss_dssp             CSSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEE
T ss_pred             cCeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeeccccc
Confidence            9999999999987654321  1122212222455778899999999999998 3 47899999998875543221111  


Q ss_pred             ----eCcEEEEEEccCCCCCcEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEE
Q psy2775         466 ----DGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKW  541 (785)
Q Consensus       466 ----~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  541 (785)
                          ......|.|.+++.+|+|.|+|.|.|.  ...++.|.|..++..        .                       
T Consensus       282 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~--~~~~~~L~V~~~p~i--------~-----------------------  328 (423)
T 3qs7_E          282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFI--------N-----------------------  328 (423)
T ss_dssp             TTTEEEEEEEEEESSCCTTTCEEEEEEETTE--EEEEEEEEEESSCEE--------E-----------------------
T ss_pred             CCceeEEEEEEEEeecCHHHCEEEEEEEecC--CCceEEEEEEeCCcc--------e-----------------------
Confidence                112347999999999999999999997  677788888876421        0                       


Q ss_pred             eecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccC
Q psy2775         542 LNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA  621 (785)
Q Consensus       542 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~  621 (785)
                                         +........+.+|++++|.|.+.|+|.|.|+|+|+|..+..+...   . .....+.+...
T Consensus       329 -------------------~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~-~~~~~~~~~~~  385 (423)
T 3qs7_E          329 -------------------ATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG---L-DNGYSISKFCN  385 (423)
T ss_dssp             -------------------EC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB---C-SSSSEEEEECC
T ss_pred             -------------------EcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc---c-cCCcEEEEEec
Confidence                               001113567889999999999999999999999999999654310   0 01122223455


Q ss_pred             CCCCCceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         622 DSETDAGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      .. +|+|.|+|.|.|..|.+..++.|.|+.
T Consensus       386 ~~-~D~G~YtC~A~N~~G~~~~s~~L~v~~  414 (423)
T 3qs7_E          386 HK-HQPGEYIFHAENDDAQFTKMFTLNIRS  414 (423)
T ss_dssp             CT-TCCSCEEEEEEETTEEEEEEEEEC---
T ss_pred             cc-ccCEEEEEEEEcCCceEEEEEEEEEec
Confidence            66 899999999999999999888888863

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=2.4e-41  Score=358.61  Aligned_cols=360  Identities=20%  Similarity=0.321  Sum_probs=267.4

Q ss_pred             CCCCeeeecCCceEe---cCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEccc-CCCCCe
Q psy2775          10 GIPPTFSKKTKPVYA---EENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSI-KKREEG   85 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v---~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G   85 (785)
                      +.+|.|..+|..+.+   .+|+++.|.|.+.|.|.|.|.|+++|..+.......+...++      .|.|.++ +.+|+|
T Consensus         3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g------~l~i~~~~~~~D~G   76 (384)
T 3kld_A            3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG------SLLINNPNKTQDAG   76 (384)
T ss_dssp             CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETT------EEEEESCCHHHHCE
T ss_pred             CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECC------EEEEcCCCCcccCE
Confidence            568999999999887   689999999999999999999999999986554333332222      3667665 788999


Q ss_pred             EEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEe-ccCCCeEEEeECCEEcccc-eEEEe
Q psy2775          86 VYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLIKDR-QITSE  162 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~-g~p~~~v~W~~~g~~~~~~-~~~~~  162 (785)
                      .|+|.|.|..|.... ...+.+..   .++........+.+.+|+.+.|.|... +.|.+.+.|++++.++... .....
T Consensus        77 ~Y~C~A~N~~G~~~s~~~~l~v~~---~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  153 (384)
T 3kld_A           77 TYQCIATNSFGTIVSREAKLQFAY---LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS  153 (384)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEE---ECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEEC
T ss_pred             EEEEEEEcCcccEEecceEEEEec---ccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEE
Confidence            999999999987542 44555532   112222233457788999999999764 4567899999999887533 22223


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE---EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeee
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA---ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL  239 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  239 (785)
                      .....|.|.++..+|+|.|+|.|.|..+.....   ..+.+....                         .....+|.+.
T Consensus       154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~-------------------------~~~~~~p~~~  208 (384)
T 3kld_A          154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG-------------------------VMGEYEPKIE  208 (384)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEE-------------------------ECCCEEEEEE
T ss_pred             cCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCC-------------------------cccccCCcee
Confidence            334579999999999999999999987654321   222221100                         0000122232


Q ss_pred             -ecCCcceeCCCCeEEEEEEEccCCCCeEEEEEC-CEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEE
Q psy2775         240 -EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA  317 (785)
Q Consensus       240 -~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~  317 (785)
                       ..+....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+.... ........|.|.++..+|+|.|+|.|.|..|.....
T Consensus       209 ~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  287 (384)
T 3kld_A          209 VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA-RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAK  287 (384)
T ss_dssp             EECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC-EECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccc-eecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence             234456678999999999999999999999995 44444222 222344589999999999999999999999998888


Q ss_pred             EEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEE
Q psy2775         318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY  396 (785)
Q Consensus       318 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  396 (785)
                      ..|.|.. +|.+...+....+..|+.+.|.|.+.+ |.+.++|+++|..+....++.+ .++   .|.|.++..+|+|.|
T Consensus       288 ~~l~v~~-~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~---~L~i~~v~~~D~G~Y  362 (384)
T 3kld_A          288 GQLTFYA-QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQG---TLNITIVNLSDAGMY  362 (384)
T ss_dssp             EEEEEEE-EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEE-ETT---EEEESSCCGGGCEEE
T ss_pred             EEEEEec-CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEE-eCC---EEEEeecChhhCEEE
Confidence            8898886 455666667788999999999999987 7889999999999987777664 344   399999999999999


Q ss_pred             EEEEeccceEEEE
Q psy2775         397 TCSLPDQETSAEL  409 (785)
Q Consensus       397 ~C~a~n~~~~~~~  409 (785)
                      +|.|.|..|....
T Consensus       363 ~C~A~N~~G~~~~  375 (384)
T 3kld_A          363 QCVAENKHGVIFS  375 (384)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEEeCCceEEe
Confidence            9999998776543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-40  Score=357.16  Aligned_cols=354  Identities=21%  Similarity=0.349  Sum_probs=276.3

Q ss_pred             CCCeeeecCCcceeCCCCeEEEEEEEcc-CCCCeEEEEECCEEccc---ceEEEeCCEEEEEEccC-----CCCCCeEEE
Q psy2775         234 EKPSILEPLHDVSITEGESAVLSVQVGG-EPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQC-----STKDKGRYS  304 (785)
Q Consensus       234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~~~v~W~~~~~~l~~---~~~~~~~~~~~l~i~~~-----~~~d~G~Y~  304 (785)
                      ....+...+....+.+|+.++|.|.+.+ .|.+.+.|+++|..+..   ...... ....|.|.++     +.+|+|.|+
T Consensus        20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~~~D~G~Y~   98 (403)
T 3laf_A           20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL-PNGSLLIQNILHSRHHKPDEGLYQ   98 (403)
T ss_dssp             CSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEEC-TTSCEEECSCCCBTTBCSSCEEEE
T ss_pred             eeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEe-cCCcEEEeeeeccCCCCCcceEEE
Confidence            3456777888899999999999999976 67889999999998862   122221 2235777776     678999999


Q ss_pred             EEEEeCCCceE--EEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCC---CCcEEEEEcC
Q psy2775         305 VKVTNKEGTVE--SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKT---SKKVTIEKKG  378 (785)
Q Consensus       305 C~~~n~~g~~~--~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~---~~~~~~~~~~  378 (785)
                      |.+.|..+...  ..+.+.|.. ++.+...+....+.+|+.+.|.|.+.+ +.+.++|++++..+..   ..+.....++
T Consensus        99 C~~~~~~~~~~~s~~~~l~v~~-p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  177 (403)
T 3laf_A           99 CEASLGDSGSIISRTAKVMVAG-PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG  177 (403)
T ss_dssp             EEEECGGGCEEECCCEEEEECC-CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTS
T ss_pred             EEEEeCCCccEEEEEEEEEecC-CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCc
Confidence            99997644333  235666654 555666667788999999999999977 6779999999988743   2244433344


Q ss_pred             cEEEEEEcCCCCCCceEEEEEEeccce-----EEEEEEEecCC-----cccccCCCeEEecCCcEEEEEEEeC-CCceEE
Q psy2775         379 TIRKLLIRNISVHDEGEYTCSLPDQET-----SAELNVVELPP-----EISVPLQDVKVSRDEKASFEIELTK-GDALVK  447 (785)
Q Consensus       379 ~~~~l~i~~~~~~d~G~Y~C~a~n~~~-----~~~~~v~~~~~-----~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~  447 (785)
                      .   |.|.++..+|+|.|+|.+.|..+     ...+.+...|.     .+...+....+.+|+.++|.|.+.+ +.+.+.
T Consensus       178 ~---L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  254 (403)
T 3laf_A          178 A---LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT  254 (403)
T ss_dssp             C---EEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEE
T ss_pred             e---EEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEE
Confidence            3   99999999999999999998543     34555554432     2334566778889999999999998 788999


Q ss_pred             EEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCce
Q psy2775         448 WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA  526 (785)
Q Consensus       448 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  526 (785)
                      |++++..+...........+  ..|.|.+++.+|+|.|+|.|.|. |....++.|.|..+                    
T Consensus       255 W~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~--------------------  312 (403)
T 3laf_A          255 WLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP--------------------  312 (403)
T ss_dssp             EEETTEECCCSSSSEEEETT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE--------------------
T ss_pred             EEECCeeccCCCceEEECCc--cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECC--------------------
Confidence            99999988765443333333  37999999999999999999998 77778888888765                    


Q ss_pred             eEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee
Q psy2775         527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR  606 (785)
Q Consensus       527 ~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~  606 (785)
                                                      |.+...+.+..+.+|+.++|.|.+.|+|.|.|.|+|+|..+..+.+..
T Consensus       313 --------------------------------p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~  360 (403)
T 3laf_A          313 --------------------------------PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ  360 (403)
T ss_dssp             --------------------------------EEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEE
T ss_pred             --------------------------------CcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEE
Confidence                                            445555556788899999999999999999999999999987766543


Q ss_pred             EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         607 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       607 ~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +.   ....|.|.++.. +|+|.|+|.|.|..|....++.|.|.
T Consensus       361 ~~---~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          361 IV---GGSNLRILGVVK-SDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             EE---TTTEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             Ee---cCccEEEecccc-ccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            33   234699999999 99999999999999999999988886

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.7e-41  Score=360.50  Aligned_cols=350  Identities=20%  Similarity=0.298  Sum_probs=269.4

Q ss_pred             CCCeeeecCCccee---CCCCeEEEEEEEccCCCCeEEEEECCEEccc---ceEEEeCCEEEEEEccCCC-CCCeEEEEE
Q psy2775         234 EKPSILEPLHDVSI---TEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCST-KDKGRYSVK  306 (785)
Q Consensus       234 ~~p~~~~~~~~~~~---~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~---~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~  306 (785)
                      .+|.|...+....+   .+|+.+.|.|.+.|+|.+.+.|+++|..+..   ..+...++  .|.|.++.. +|+|.|+|.
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~--~L~i~~~~~~~D~G~Y~C~   80 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCV   80 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT--EEEEESCCHHHHCEEEEEE
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCC--eEEEecccccccCEEEEEE
Confidence            45778887777765   7899999999999999999999999998862   23333333  799999987 999999999


Q ss_pred             EEeCCCceEE-EEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcC--CCCcEEEEEcCcEE
Q psy2775         307 VTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIK--TSKKVTIEKKGTIR  381 (785)
Q Consensus       307 ~~n~~g~~~~-~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~--~~~~~~~~~~~~~~  381 (785)
                      |.|..|.... .+.|.|...+...........+.+|+.+.|.|.+..  +.+.+.|++++..+.  ...+.......  .
T Consensus        81 a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~  158 (382)
T 1cs6_A           81 ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT--G  158 (382)
T ss_dssp             EEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTT--C
T ss_pred             EEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCc--e
Confidence            9998876543 366666654433333455678899999999998643  678999999987653  23333332221  2


Q ss_pred             EEEEcCCCCCCceEEEEEEeccce----E-----EEEEEEe-----cCCcccc-cCCCeEEecCCcEEEEEEEeC-CCce
Q psy2775         382 KLLIRNISVHDEGEYTCSLPDQET----S-----AELNVVE-----LPPEISV-PLQDVKVSRDEKASFEIELTK-GDAL  445 (785)
Q Consensus       382 ~l~i~~~~~~d~G~Y~C~a~n~~~----~-----~~~~v~~-----~~~~~~~-~~~~~~v~~g~~~~l~C~~~~-~~~~  445 (785)
                      .|.|.++..+|+|.|+|.+.|..+    .     ..+.+..     .+|.+.. .+....+.+|+.++|.|.+.+ +.+.
T Consensus       159 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~  238 (382)
T 1cs6_A          159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ  238 (382)
T ss_dssp             CEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCE
T ss_pred             EEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCE
Confidence            499999999999999999988652    1     1222211     1333333 345677889999999999988 7789


Q ss_pred             EEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccC
Q psy2775         446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLG  524 (785)
Q Consensus       446 i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  524 (785)
                      +.|++++..+....      ......|.|.+++.+|+|.|+|.|.|. |.....+.|.|..+                  
T Consensus       239 i~W~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~------------------  294 (382)
T 1cs6_A          239 IKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ------------------  294 (382)
T ss_dssp             EEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE------------------
T ss_pred             EEEEECCcccccEE------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecC------------------
Confidence            99999887754311      112347999999999999999999998 77777888888765                  


Q ss_pred             ceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCC
Q psy2775         525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK  604 (785)
Q Consensus       525 ~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~  604 (785)
                                                        |.+...+....+.+|+.++|.|.+.|+|.|.|.|+|+|..+..+.+
T Consensus       295 ----------------------------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~  340 (382)
T 1cs6_A          295 ----------------------------------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR  340 (382)
T ss_dssp             ----------------------------------EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSS
T ss_pred             ----------------------------------CCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCce
Confidence                                              4455555567889999999999999999999999999999987665


Q ss_pred             eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         605 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       605 ~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      ..+  .+  .+|.|.++.. +|+|.|+|.|.|..|....++.|.|.
T Consensus       341 ~~~--~~--~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          341 IEV--SG--GELRFSKLVL-EDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEE--ET--TEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEE--EC--CEEEECcCCc-ccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            433  22  3699999999 99999999999999999999998885

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.9e-41  Score=363.30  Aligned_cols=356  Identities=21%  Similarity=0.380  Sum_probs=274.0

Q ss_pred             CCCeeee-cCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc---cceEEEeCCEEEEEEc----cCCCCCCeEEEE
Q psy2775         234 EKPSILE-PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLI----QCSTKDKGRYSV  305 (785)
Q Consensus       234 ~~p~~~~-~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~---~~~~~~~~~~~~l~i~----~~~~~d~G~Y~C  305 (785)
                      .+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.   ............|.|.    ++..+|+|.|+|
T Consensus        15 ~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C   94 (404)
T 3p3y_A           15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQC   94 (404)
T ss_dssp             CCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEE
T ss_pred             CCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEE
Confidence            4566664 4667789999999999999999999999999999875   1222222234456664    788899999999


Q ss_pred             EEEeCCCceE-EEEEEEEeccccceeeeccceeEeeCccEEEEEEE-cC-CCCeEEEEECCE-EcCCCCcEEEEEcCcEE
Q psy2775         306 KVTNKEGTVE-SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV-TS-DKADVKWFKDGQ-EIKTSKKVTIEKKGTIR  381 (785)
Q Consensus       306 ~~~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-~~~~v~W~~~~~-~l~~~~~~~~~~~~~~~  381 (785)
                      .+.|..|... ..+.|.|...+...........+.+|+.+.|.|.+ .+ +.+.+.|++++. .+....+.....++.  
T Consensus        95 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--  172 (404)
T 3p3y_A           95 FARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD--  172 (404)
T ss_dssp             EEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSC--
T ss_pred             EEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCc--
Confidence            9999988764 56788888765555555566789999999999998 44 678999999874 344444555555554  


Q ss_pred             EEEEcCCCCCC-ceEEEEEEeccceE-------EEEEEEe------cCCcccccC---CCeEEecCCcEEEEEEEeC-CC
Q psy2775         382 KLLIRNISVHD-EGEYTCSLPDQETS-------AELNVVE------LPPEISVPL---QDVKVSRDEKASFEIELTK-GD  443 (785)
Q Consensus       382 ~l~i~~~~~~d-~G~Y~C~a~n~~~~-------~~~~v~~------~~~~~~~~~---~~~~v~~g~~~~l~C~~~~-~~  443 (785)
                       |.|.++...| +|.|+|.+.|..+.       ..+.+..      .+|.+..+.   ....+.+|+.+.|.|.+.+ +.
T Consensus       173 -l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~  251 (404)
T 3p3y_A          173 -LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT  251 (404)
T ss_dssp             -EEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSC
T ss_pred             -EEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCC
Confidence             9999999999 59999999875432       2233332      233333332   3456889999999999988 67


Q ss_pred             ceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEec
Q psy2775         444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPH  522 (785)
Q Consensus       444 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  522 (785)
                      +.+.|++++..+..... ....  ....|.|.+++.+|+|.|+|.|.|. |.....+.|.|..+                
T Consensus       252 ~~v~W~~~~~~~~~~~~-~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~----------------  312 (404)
T 3p3y_A          252 PDIAWYKKGGDLPSDKA-KFEN--FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA----------------  312 (404)
T ss_dssp             CEEEEEETTBCCCTTTE-EEEG--GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE----------------
T ss_pred             CcEEEEECCEECCCCcc-cccc--cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCC----------------
Confidence            89999999998865443 2221  2247999999999999999999998 88788888888765                


Q ss_pred             cCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC
Q psy2775         523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS  602 (785)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~  602 (785)
                                                          |.+...+.+..+.+|+.++|.|.+.|+|.|.|.|+|+|..+...
T Consensus       313 ------------------------------------p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  356 (404)
T 3p3y_A          313 ------------------------------------PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA  356 (404)
T ss_dssp             ------------------------------------EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGS
T ss_pred             ------------------------------------CeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCC
Confidence                                                45555556778899999999999999999999999999999765


Q ss_pred             CC-eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         603 PK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       603 ~~-~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .. ......+  .+|.|.++.. +|+|.|+|.|.|..|....++.|.|.
T Consensus       357 ~~~~~~~~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          357 PPNPNREVAG--DTIIFRDTQI-SSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             CCCTTEEEET--TEEEESSCCS-SCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCceEEecC--CEEEEeecCH-HHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            42 1222223  3699999999 99999999999999999999988875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=8.2e-41  Score=358.23  Aligned_cols=363  Identities=21%  Similarity=0.298  Sum_probs=281.2

Q ss_pred             ccccCCCCeeeecCCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEccc---
Q psy2775           6 DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSI---   79 (785)
Q Consensus         6 ~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~---   79 (785)
                      ......+..|..+|.++.+.+|++++|.|.+.+ .|.+.+.|++++..+...  .+.....++       .|.|.++   
T Consensus        15 ~~~~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~-------~l~i~~~~~~   87 (403)
T 3laf_A           15 HHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG-------SLLIQNILHS   87 (403)
T ss_dssp             ----CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTS-------CEEECSCCCB
T ss_pred             ccCCceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCC-------cEEEeeeecc
Confidence            355677889999999999999999999999977 577899999999988643  333333222       2667766   


Q ss_pred             --CCCCCeEEEEEEEcCCeeE--EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcc
Q psy2775          80 --KKREEGVYTVVAKNREGEA--KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK  155 (785)
Q Consensus        80 --~~~D~G~Y~C~a~~~~~~~--~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~  155 (785)
                        +.+|+|.|+|.|.+..+..  ...+.+.|.    .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+.
T Consensus        88 ~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~----~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~  163 (403)
T 3laf_A           88 RHHKPDEGLYQCEASLGDSGSIISRTAKVMVA----GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN  163 (403)
T ss_dssp             TTBCSSCEEEEEEEECGGGCEEECCCEEEEEC----CCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCC
T ss_pred             CCCCCcceEEEEEEEeCCCccEEEEEEEEEec----CCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEecc
Confidence              7789999999999654433  334555664    46777777788899999999999999999999999999998874


Q ss_pred             c---ceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE-EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCC
Q psy2775         156 D---RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTG  231 (785)
Q Consensus       156 ~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (785)
                      .   ..........+|.|.++..+|+|.|+|.|.|..+... ....+.|...+..                         
T Consensus       164 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~-------------------------  218 (403)
T 3laf_A          164 PIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL-------------------------  218 (403)
T ss_dssp             CCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCC-------------------------
T ss_pred             ccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCc-------------------------
Confidence            2   2222222334799999999999999999999877533 3466666533200                         


Q ss_pred             CCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEccc--ceEEEeCCEEEEEEccCCCCCCeEEEEEEEe
Q psy2775         232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--RQITSEKNTHTLTLIQCSTKDKGRYSVKVTN  309 (785)
Q Consensus       232 ~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n  309 (785)
                       +.++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ...... ....|.|.++..+|+|.|+|.|.|
T Consensus       219 -~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n  296 (403)
T 3laf_A          219 -HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL-GGSNLLISNVTDDDSGTYTCVVTY  296 (403)
T ss_dssp             -CEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE-TTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             -ccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC-CccEEEEeCCCHHHCEEEEEEEEc
Confidence             0122345556677788999999999999999999999999988762  112222 234799999999999999999999


Q ss_pred             CCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCC
Q psy2775         310 KEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI  388 (785)
Q Consensus       310 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~  388 (785)
                      ..|....++.|.|.. +|.+...+....+.+|+.++|.|.+.+ |.+.++|+++|..+.......+...+   .|.|.++
T Consensus       297 ~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~---~L~i~~v  372 (403)
T 3laf_A          297 KNENISASAELTVLV-PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGV  372 (403)
T ss_dssp             TTEEEEEEEEEEEEE-EEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTT---EEEESSC
T ss_pred             CCCceEEEEEEEEEC-CCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCc---cEEEecc
Confidence            999888889999886 555666667778889999999999987 77899999999999877776665444   3999999


Q ss_pred             CCCCceEEEEEEeccceEEEEE
Q psy2775         389 SVHDEGEYTCSLPDQETSAELN  410 (785)
Q Consensus       389 ~~~d~G~Y~C~a~n~~~~~~~~  410 (785)
                      ..+|+|.|+|.|.|..+.....
T Consensus       373 ~~~d~G~Y~C~a~N~~G~~~~~  394 (403)
T 3laf_A          373 VKSDEGFYQCVAENEAGNAQSS  394 (403)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccccCEEEEEEEEcCCceEEEE
Confidence            9999999999999987766544

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=354.20  Aligned_cols=384  Identities=13%  Similarity=0.155  Sum_probs=233.9

Q ss_pred             CCCCeEEEEEEEcCCeeEEE-EeeEEE---e--------CCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEe
Q psy2775          81 KREEGVYTVVAKNREGEAKM-DIPVKV---N--------TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY  148 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~~~~-~~~v~v---~--------~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~  148 (785)
                      ..|.|.|+|...+..+.... ..++..   .        ...+..+.++..+..+.+.+|+.+.|.|.+.|.|.+.|.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~   83 (423)
T 3qs7_E            4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV   83 (423)
T ss_dssp             ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred             cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence            46899999999876543322 111111   0        00111223444445889999999999999999999999999


Q ss_pred             ECCEEcccceEE--EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCcccccccee
Q psy2775         149 KDGKLIKDRQIT--SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL  226 (785)
Q Consensus       149 ~~g~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (785)
                      +++..+......  ......+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...                       
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~-----------------------  140 (423)
T 3qs7_E           84 FKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT-----------------------  140 (423)
T ss_dssp             ETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-------------------------
T ss_pred             ECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecC-----------------------
Confidence            999876543211  1122457999999999999999999999998888888888632                       


Q ss_pred             eecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEE-ccCCCCCCeEEEE
Q psy2775         227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL-IQCSTKDKGRYSV  305 (785)
Q Consensus       227 ~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i-~~~~~~d~G~Y~C  305 (785)
                               |.+. ...+..+..|+.+.|.|.+.|+|.|.|+|++++..+..........  .+.. ..+...|+|.|+|
T Consensus       141 ---------p~~~-~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~--~~~~~~~l~~~d~G~Y~C  208 (423)
T 3qs7_E          141 ---------LLYT-LRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV--VKKEEKVLHELFGTDIRC  208 (423)
T ss_dssp             ------------C-EEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------C--EEECCSEECCCCSSCEEE
T ss_pred             ---------cccc-ccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccccc--ccccceEEecccCeEEEE
Confidence                     1111 0111223457778899999999999999999887553111000000  0111 1115789999999


Q ss_pred             EEEeCCCceEEE-EEEEEeccccceeeeccceeEeeCccEEEEEEEcC-C-CCeEEEEECCEEcCCCCcEEE--EEcC--
Q psy2775         306 KVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-D-KADVKWFKDGQEIKTSKKVTI--EKKG--  378 (785)
Q Consensus       306 ~~~n~~g~~~~~-~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~-~~~v~W~~~~~~l~~~~~~~~--~~~~--  378 (785)
                      .|.|..|..... +.|.|...+..   .+....+.+|+.+.|.|.+.+ + .+.++|+++|..+.....+..  ...+  
T Consensus       209 ~A~N~~G~~~~~~~~l~V~~~p~~---~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~  285 (423)
T 3qs7_E          209 CARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT  285 (423)
T ss_dssp             EEECSSCEEEEECEEEESSSCCCS---STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTE
T ss_pred             EEEcCCCCcceeeEEEEEecCCcc---CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCce
Confidence            999999876543 56666543322   344677899999999999987 4 489999999988765432211  1111  


Q ss_pred             --cEEEEEEcCCCCCCceEEEEEEecc-ceEEEEEEEecCCcccccC--CCeEEecCCcEEEEEEEeC-CCceEEEEECC
Q psy2775         379 --TIRKLLIRNISVHDEGEYTCSLPDQ-ETSAELNVVELPPEISVPL--QDVKVSRDEKASFEIELTK-GDALVKWYKDG  452 (785)
Q Consensus       379 --~~~~l~i~~~~~~d~G~Y~C~a~n~-~~~~~~~v~~~~~~~~~~~--~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~  452 (785)
                        ....|.|.++..+|+|.|+|.|.|. .....+.|.. +|.+...+  ....+.+|+.+.|.|.+.+ |.|.|+|+|+|
T Consensus       286 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~-~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g  364 (423)
T 3qs7_E          286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR  364 (423)
T ss_dssp             EEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEES-SCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETT
T ss_pred             eEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEe-CCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECC
Confidence              1235999999999999999999997 2233444544 34443332  3456778999999999998 88999999999


Q ss_pred             EEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCc
Q psy2775         453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPA  507 (785)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~  507 (785)
                      ..+.......  .++  ..+.+.....+|+|.|+|.|.|. |....++.|.|...|
T Consensus       365 ~~l~~~~~~~--~~~--~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p  416 (423)
T 3qs7_E          365 KSFPCEQKGL--DNG--YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT  416 (423)
T ss_dssp             EEEECBCCBC--SSS--SEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred             EECCCccccc--cCC--cEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence            9986543100  000  11222456678999999999998 888889999998875

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=4.2e-41  Score=359.43  Aligned_cols=352  Identities=22%  Similarity=0.336  Sum_probs=268.2

Q ss_pred             CCCeeeecCCcceeCCCCeEEEEEEEcc-CCCCeEEEEECCEEcccc--eEEEeCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy2775         234 EKPSILEPLHDVSITEGESAVLSVQVGG-EPSPKVEWYKDGKLIKDR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNK  310 (785)
Q Consensus       234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~  310 (785)
                      .+|.|...+....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+...  .........+|.|.++..+|+|.|+|.+.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~   84 (395)
T 1bih_A            5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP   84 (395)
T ss_dssp             CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeC
Confidence            5688888888889999999999999988 889999999999887622  2334445568999999999999999999998


Q ss_pred             CCceEE-EEEEEEeccccceeeeccceeEeeCccEEEEEEE-cC-CCCeEEEEECC---EEcCC----CCcEEEEEcCcE
Q psy2775         311 EGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV-TS-DKADVKWFKDG---QEIKT----SKKVTIEKKGTI  380 (785)
Q Consensus       311 ~g~~~~-~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-~~~~v~W~~~~---~~l~~----~~~~~~~~~~~~  380 (785)
                      .|.... .+.|.+...+. +...+....+.+|+.+.|.|.+ .+ |.+.++|++++   .+...    ..++....++. 
T Consensus        85 ~g~~~s~~~~l~v~~~~~-p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-  162 (395)
T 1bih_A           85 AGVASSRVISFRKTYLIA-SPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGN-  162 (395)
T ss_dssp             TEEEECCCEEEEEEEEEC-CCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSC-
T ss_pred             CCeEEeEEEEEEEEEeec-CCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCc-
Confidence            776542 25555543221 1223445667899999999996 44 77899999986   22211    33555545554 


Q ss_pred             EEEEEcCCCCCCce---EEEEEEeccceEEEEEE----E---ec---------CCcccccCCCeEEecCCcEEEEEEEeC
Q psy2775         381 RKLLIRNISVHDEG---EYTCSLPDQETSAELNV----V---EL---------PPEISVPLQDVKVSRDEKASFEIELTK  441 (785)
Q Consensus       381 ~~l~i~~~~~~d~G---~Y~C~a~n~~~~~~~~v----~---~~---------~~~~~~~~~~~~v~~g~~~~l~C~~~~  441 (785)
                        |.|.++..+|+|   .|+|.|.|..+.....+    .   ..         +|.+  .+....+.+|+.+.|.|.+.+
T Consensus       163 --L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g  238 (395)
T 1bih_A          163 --LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGS  238 (395)
T ss_dssp             --EEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEEC
T ss_pred             --EEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEecc
Confidence              999999999999   99999998665422211    1   10         1111  245677899999999999987


Q ss_pred             -CCceEEEEECCEEcccCCCEEEEE--eCcEEEEEEccCCCCCcEEEEEEEeec-Cccee-EEEEEEEcCcccccccCCC
Q psy2775         442 -GDALVKWYKDGKEIAFSENVTLSI--DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKES-KATLTVEAPAVEFLTKLPS  516 (785)
Q Consensus       442 -~~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~-~~~l~V~~~~~~~~~~~~~  516 (785)
                       +.+.+.|+++|..+.......+..  ......|.|.++..+|+|.|+|.|.|. |.... ++.|.|..+          
T Consensus       239 ~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~----------  308 (395)
T 1bih_A          239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA----------  308 (395)
T ss_dssp             SSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEE----------
T ss_pred             CCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcC----------
Confidence             678899999999886544332221  122347999999999999999999998 66555 888888865          


Q ss_pred             eeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeee-eeeeecCeEEEEEEEecCCCCceEEEeC
Q psy2775         517 VTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRN  595 (785)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~g~P~p~v~W~~~  595 (785)
                                                                |.|...+.. ..+.+|+.++|.|.+.|+|.|.|.|+|+
T Consensus       309 ------------------------------------------P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~  346 (395)
T 1bih_A          309 ------------------------------------------PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN  346 (395)
T ss_dssp             ------------------------------------------EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEET
T ss_pred             ------------------------------------------CccccCCCcceEecCCCeEEEEEEECcccCCeeEEEEC
Confidence                                                      444444444 6789999999999999999999999999


Q ss_pred             CEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         596 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       596 ~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |..+..+ ++.  ..++  +|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus       347 g~~~~~~-~~~--~~~~--~L~i~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          347 AKPLSGG-RAT--VTDS--GLVIKGVKN-GDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             TEECCSS-SEE--EETT--EEEESSCCS-TTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEECCCC-ceE--EECC--EEEEeeCCc-ccCEEEEEEEEccCCCceEEEEEEE
Confidence            9998654 332  2233  799999999 9999999999999999999888877

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.7e-40  Score=356.00  Aligned_cols=364  Identities=20%  Similarity=0.337  Sum_probs=272.1

Q ss_pred             ccCCCCeeee-cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEc----ccC
Q psy2775           8 LEGIPPTFSK-KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIK----SIK   80 (785)
Q Consensus         8 ~~~~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~----~~~   80 (785)
                      ....||.|.. .+..+.+.+|++++|.|.+.|.|.+.|.|++++..+...  .+..+...++      +|.|.    +++
T Consensus        12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~------~l~i~~~~~~~~   85 (404)
T 3p3y_A           12 ELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG------TLVIDFRSGGRP   85 (404)
T ss_dssp             -CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSC------CCBCCCTTTCCT
T ss_pred             hccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCc------eEEEEeccCCCC
Confidence            4557888875 578899999999999999999999999999999987543  2222222221      24453    889


Q ss_pred             CCCCeEEEEEEEcCCeeEE-EEeeEEEeCCCCCCCce-ecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEc-cc
Q psy2775          81 KREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI-KD  156 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i-~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~-~~  156 (785)
                      .+|+|.|+|.|.|..|... ..+.|.|..    +|.+ ........+.+|+.+.|.|.+ .+.|.+.+.|++++... ..
T Consensus        86 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~----~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~  161 (404)
T 3p3y_A           86 EEYEGEYQCFARNKFGTALSNRIRLQVSK----SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ  161 (404)
T ss_dssp             TSSCEEEEEEEECSSCEEEEEEEEEEECC----CCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCC
T ss_pred             ccCCEEEEEEEEcCCCeEeeeeEEEEEec----cCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCC
Confidence            9999999999999988764 567777763    3332 233455788999999999999 78899999999987443 32


Q ss_pred             ceEEEeCCEEEEEEcccCCCC-cEEEEEEEEcCCeeEEE---EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCC
Q psy2775         157 RQITSEKNTHTLTLIQCSTKD-KGRYSVKVTNKEGTVES---AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGK  232 (785)
Q Consensus       157 ~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (785)
                      ...........|.|.++..+| +|.|+|.|.|..+....   ...+.|.......                         
T Consensus       162 ~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~-------------------------  216 (404)
T 3p3y_A          162 DKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA-------------------------  216 (404)
T ss_dssp             CSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCC-------------------------
T ss_pred             CCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCcc-------------------------
Confidence            222222333479999999999 59999999998775322   2445554221100                         


Q ss_pred             CCCCeeeecC---CcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEe
Q psy2775         233 PEKPSILEPL---HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN  309 (785)
Q Consensus       233 ~~~p~~~~~~---~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n  309 (785)
                      ..+|.+..+.   ....+.+|+.+.|.|.+.|+|.+.+.|+++|..+.............|.|.++..+|+|.|+|.|.|
T Consensus       217 ~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  296 (404)
T 3p3y_A          217 ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASN  296 (404)
T ss_dssp             CCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEe
Confidence            0122222221   2356789999999999999999999999999888744334444455899999999999999999999


Q ss_pred             CCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCC--cEEEEEcCcEEEEEEc
Q psy2775         310 KEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLIR  386 (785)
Q Consensus       310 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~  386 (785)
                      ..|.....+.|.|.. +|.+...+....+.+|+.++|.|.+.+ |.+.++|+++|..+....  ......++   .|.|.
T Consensus       297 ~~g~~~~~~~l~V~~-~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~L~i~  372 (404)
T 3p3y_A          297 KMGSIRHTISVRVKA-APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD---TIIFR  372 (404)
T ss_dssp             SSCEEEEEEEEEEEE-EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETT---EEEES
T ss_pred             CCCcEEEEEEEEEeC-CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCC---EEEEe
Confidence            999988889999886 455666667788899999999999987 788999999999987554  11122333   49999


Q ss_pred             CCCCCCceEEEEEEeccceEEEEE
Q psy2775         387 NISVHDEGEYTCSLPDQETSAELN  410 (785)
Q Consensus       387 ~~~~~d~G~Y~C~a~n~~~~~~~~  410 (785)
                      ++..+|+|.|+|.|.|..+.....
T Consensus       373 ~v~~~d~G~Y~C~a~N~~G~~~~~  396 (404)
T 3p3y_A          373 DTQISSRAVYQCNTSNEHGYLLAN  396 (404)
T ss_dssp             SCCSSCCCEEEEEEEETTEEEEEE
T ss_pred             ecCHHHCEEEEEEEEeCCCcEEEE
Confidence            999999999999999987766543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=3.8e-40  Score=350.13  Aligned_cols=354  Identities=19%  Similarity=0.307  Sum_probs=271.9

Q ss_pred             CCCeeeecCCceEe---cCCCeEEEEEEEEecCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCC-CCC
Q psy2775          11 IPPTFSKKTKPVYA---EENSEVTLEVRLVAVPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKK-REE   84 (785)
Q Consensus        11 ~~p~~~~~~~~~~v---~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~-~D~   84 (785)
                      .+|.|...|....+   .+|++++|.|.+.|.|.+.+.|++++..+...  .++.+.  +      ..|.|.++.. +|+
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~--~------~~L~i~~~~~~~D~   74 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--A------GDLVISNPVKAKDA   74 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE--T------TEEEEESCCHHHHC
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee--C------CeEEEecccccccC
Confidence            58999999999887   89999999999999999999999999988654  334332  2      2499999997 999


Q ss_pred             eEEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcc---cceE
Q psy2775          85 GVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQI  159 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~---~~~~  159 (785)
                      |.|+|.|.|..|.... .+.|.|..   .++..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.   ....
T Consensus        75 G~Y~C~a~n~~g~~~s~~~~l~v~~---~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~  151 (382)
T 1cs6_A           75 GSYQCVATNARGTVVSREASLRFGF---LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR  151 (382)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEE---ECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSE
T ss_pred             EEEEEEEEcCCcEEEecceEEEeec---cccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceE
Confidence            9999999999886543 45565542   11112223456788999999999996 457888999999987643   1222


Q ss_pred             EEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE-----EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCC
Q psy2775         160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-----AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPE  234 (785)
Q Consensus       160 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-----~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (785)
                      ........|.|.+++.+|+|.|+|.|.|..|....     ...|.|....                          ....
T Consensus       152 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~--------------------------~~~~  205 (382)
T 1cs6_A          152 FVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAED--------------------------ARQY  205 (382)
T ss_dssp             EECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC--------------------------CCCE
T ss_pred             EEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhh--------------------------cccC
Confidence            23333457999999999999999999987743222     2344443210                          0012


Q ss_pred             CCeeee-cCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCc
Q psy2775         235 KPSILE-PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT  313 (785)
Q Consensus       235 ~p~~~~-~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  313 (785)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   ........|.|.++..+|+|.|+|.|.|..|.
T Consensus       206 ~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  282 (382)
T 1cs6_A          206 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR  282 (382)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC---CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc---EEecCCcEEEEccCChhhCEEEEEEEEcCCCe
Confidence            344443 34466788999999999999999999999998876643   11234458999999999999999999999999


Q ss_pred             eEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCC
Q psy2775         314 VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD  392 (785)
Q Consensus       314 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d  392 (785)
                      ....+.|.|.. +|.+...+....+..|+.+.|.|.+.+ |.+.++|+++|..+....++.+. ++   .|.|.++..+|
T Consensus       283 ~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~-~~---~L~i~~v~~~d  357 (382)
T 1cs6_A          283 DTYQGRIIIHA-QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-GG---ELRFSKLVLED  357 (382)
T ss_dssp             EEEEEEEEEEE-EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-TT---EEEESSCCGGG
T ss_pred             EEEEEEEEEec-CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE-CC---EEEECcCCccc
Confidence            88888898886 455555666778899999999999987 78899999999999887776653 33   39999999999


Q ss_pred             ceEEEEEEeccceEEEE
Q psy2775         393 EGEYTCSLPDQETSAEL  409 (785)
Q Consensus       393 ~G~Y~C~a~n~~~~~~~  409 (785)
                      +|.|+|.|.|..+....
T Consensus       358 ~G~Y~C~a~N~~G~~~~  374 (382)
T 1cs6_A          358 SGMYQCVAENKHGTVYA  374 (382)
T ss_dssp             CEEEEEEEEETTEEEEE
T ss_pred             CEEEEEEEEeCCCeEEE
Confidence            99999999998776543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=2.3e-40  Score=352.72  Aligned_cols=342  Identities=20%  Similarity=0.337  Sum_probs=260.4

Q ss_pred             CCeeeecCCc-ceeCCCCeEEEEEEEccCCCCeEEEEE-CCEEccc---ceEEEeCCEEEEEEccCCCCC------CeEE
Q psy2775         235 KPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTHTLTLIQCSTKD------KGRY  303 (785)
Q Consensus       235 ~p~~~~~~~~-~~~~~G~~~~l~C~~~g~p~~~v~W~~-~~~~l~~---~~~~~~~~~~~l~i~~~~~~d------~G~Y  303 (785)
                      +|.|...+.. ..+.+|+.++|.|.+.|.|.+.|.|++ +|..+..   .....  ...+|.|.++..+|      +|.|
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~~~~~d~G~Y   80 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SDGKLVFPPFRAEDYRQEVHAQVY   80 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC--STTEEEECCCCGGGCCHHHHEEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc--CCceEEecccChhhccccccCceE
Confidence            4667766554 457799999999999999999999999 7877652   12222  23479999999987      9999


Q ss_pred             EEEEEeCCCceE-EEEEEEEeccccceeeeccceeEeeCccEEEEEEEcCC----CCeEEEEECCEEcCC-----CCcEE
Q psy2775         304 SVKVTNKEGTVE-SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD----KADVKWFKDGQEIKT-----SKKVT  373 (785)
Q Consensus       304 ~C~~~n~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~v~W~~~~~~l~~-----~~~~~  373 (785)
                      +|.|.|..|... ..+.|.+.. ++.+...+....+.+|+.++|.|.+.+.    .+.+.|++++..+..     ..++.
T Consensus        81 ~C~a~n~~g~~~s~~~~v~v~~-~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~  159 (388)
T 2v5m_A           81 ACLARNQFGSIISRDVHVRAVV-AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL  159 (388)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC-CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEE
T ss_pred             EEEEEccCCeEEecceEEEEcc-ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEE
Confidence            999999988643 346666654 4445555667789999999999999763    278999999876632     23454


Q ss_pred             EEEcCcEEEEEEcCCCCCCc-eEEEEEEeccc-eEE-------EEEEEecC----Ccc-cccCCCeEEecCCcEEEEEEE
Q psy2775         374 IEKKGTIRKLLIRNISVHDE-GEYTCSLPDQE-TSA-------ELNVVELP----PEI-SVPLQDVKVSRDEKASFEIEL  439 (785)
Q Consensus       374 ~~~~~~~~~l~i~~~~~~d~-G~Y~C~a~n~~-~~~-------~~~v~~~~----~~~-~~~~~~~~v~~g~~~~l~C~~  439 (785)
                      +..++.   |.|.++..+|+ |.|+|.+.|.. +..       .+.+....    |.+ ........+.+|+.++|.|.+
T Consensus       160 ~~~~~~---L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~  236 (388)
T 2v5m_A          160 VLPSGE---LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA  236 (388)
T ss_dssp             ECTTSC---EEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC
T ss_pred             EccCCc---EEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC
Confidence            444444   99999999999 99999998753 211       23333221    111 112344568899999999999


Q ss_pred             eC-CCceEEEEECCEEc------ccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCccccc
Q psy2775         440 TK-GDALVKWYKDGKEI------AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFL  511 (785)
Q Consensus       440 ~~-~~~~i~W~~~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~  511 (785)
                      .+ |.+.+.|++++..+      ....+... .+   ..|.|.++..+|+|.|+|.|.|. |.....+.|.|..+     
T Consensus       237 ~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-----  307 (388)
T 2v5m_A          237 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ-VS---GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-----  307 (388)
T ss_dssp             EEESCCEEEEEEECTTSSCEEECCCSSSEEE-ET---TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE-----
T ss_pred             CCCCCCEEEEEecCCCCcccccccccCceec-cc---CEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCC-----
Confidence            88 78899999975322      22233322 12   37999999999999999999998 88888888888865     


Q ss_pred             ccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceE
Q psy2775         512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV  591 (785)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~  591 (785)
                                                                     |.+...+....+.+|++++|.|.+.|+|.|.|+
T Consensus       308 -----------------------------------------------p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~  340 (388)
T 2v5m_A          308 -----------------------------------------------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS  340 (388)
T ss_dssp             -----------------------------------------------EEEEEESSEEEECTTSCEEEEEEEEEECCCEEE
T ss_pred             -----------------------------------------------CccccCCCcEEecCCCCEEEEEEeccccCCeEE
Confidence                                                           333334456788999999999999999999999


Q ss_pred             EEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       592 W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      |+|+|..+..+          ..+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus       341 W~~~g~~i~~~----------~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          341 WMKDGKAIGHS----------ESVLRIESVKK-EDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEETTEECSCC----------SSEEEESSCCG-GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEECCEECccC----------CCEEEEecCCh-hhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            99999988543          24699999999 9999999999999999999888876

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.4e-39  Score=347.64  Aligned_cols=364  Identities=18%  Similarity=0.279  Sum_probs=267.7

Q ss_pred             ccCCCCeeeecCCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCe
Q psy2775           8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus         8 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      -+..||.|...|..+.+.+|++++|.|.+.+ .|.+.+.|++++..+..... +.....+      .+|.|.+++.+|+|
T Consensus         2 ~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~------~~L~i~~~~~~D~G   75 (395)
T 1bih_A            2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE------GSLVFLRPQASDEG   75 (395)
T ss_dssp             ---CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTS------CCEEESSCCGGGCE
T ss_pred             CcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCC------ceEEEecCCCCCCc
Confidence            3568999999999999999999999999998 78899999999998876653 2222222      24999999999999


Q ss_pred             EEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECC---EEcc-----
Q psy2775          86 VYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDG---KLIK-----  155 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g---~~~~-----  155 (785)
                      .|+|.|.|..|.... .+.|.+...  ..|.+  .+....+.+|+.+.|.|.+ .+.|.+.+.|+++|   .+..     
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~~~--~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~  151 (395)
T 1bih_A           76 HYQCFAETPAGVASSRVISFRKTYL--IASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF  151 (395)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEEE--ECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCC
T ss_pred             EEEEEEEeCCCeEEeEEEEEEEEEe--ecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccc
Confidence            999999998887652 344444321  22333  2235667899999999996 78899999999986   2211     


Q ss_pred             cceEEEeCCEEEEEEcccCCCCcE---EEEEEEEcCCeeEEEEEEEEeec-CCCCCCCCCCCCCCCccccccceeeecCC
Q psy2775         156 DRQITSEKNTHTLTLIQCSTKDKG---RYSVKVTNKEGTVESAANLNVDP-YEPKESKETPPSPPPYVVSELDTLQVNTG  231 (785)
Q Consensus       156 ~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~a~n~~g~~~~~~~l~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (785)
                      ....... ...+|.|.++..+|+|   .|+|.|.|..|............ ..+...    +                ..
T Consensus       152 ~~~~~~~-~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~----~----------------~~  210 (395)
T 1bih_A          152 DRRITAG-PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS----G----------------YK  210 (395)
T ss_dssp             CTTEEEC-TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSS----C----------------CC
T ss_pred             cccEEEc-CCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccc----c----------------cc
Confidence            1112222 2336999999999999   99999999988644433222211 100000    0                00


Q ss_pred             CCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEccc---ceEEE--eCCEEEEEEccCCCCCCeEEEEE
Q psy2775         232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITS--EKNTHTLTLIQCSTKDKGRYSVK  306 (785)
Q Consensus       232 ~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~---~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~  306 (785)
                      ...+|.+  .+....+.+|+.+.|.|.+.|+|.+.+.|+++|..+..   ..+..  ......|.|.++..+|+|.|+|.
T Consensus       211 ~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  288 (395)
T 1bih_A          211 GEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE  288 (395)
T ss_dssp             CCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEE
T ss_pred             CCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEE
Confidence            0122333  24566788999999999999999999999999988762   12221  11233799999999999999999


Q ss_pred             EEeCCCceEE-EEEEEEeccccceeeeccc-eeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEE
Q psy2775         307 VTNKEGTVES-AANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKL  383 (785)
Q Consensus       307 ~~n~~g~~~~-~~~l~v~~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l  383 (785)
                      |.|..|.... ++.|.|.. +|.+...+.. ..+.+|+.+.|.|.+.+ |.+.+.|+++|..+..+ ++.+. ++   .|
T Consensus       289 a~n~~g~~~~~~~~l~V~~-~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~-~~---~L  362 (395)
T 1bih_A          289 VDNGVGKPQKHSLKLTVVS-APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT-DS---GL  362 (395)
T ss_dssp             ECCSSSSCEEEEEEEEEEE-EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE-TT---EE
T ss_pred             EEeCCCCceEEEEEEEEEc-CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE-CC---EE
Confidence            9999988665 78888886 4455555555 77899999999999987 78899999999998755 44443 33   49


Q ss_pred             EEcCCCCCCceEEEEEEeccceEEEEE
Q psy2775         384 LIRNISVHDEGEYTCSLPDQETSAELN  410 (785)
Q Consensus       384 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~  410 (785)
                      .|.++..+|+|.|+|.|.|..+.....
T Consensus       363 ~i~~~~~~d~G~Y~C~a~N~~G~~~~~  389 (395)
T 1bih_A          363 VIKGVKNGDKGYYGCRATNEHGDKYFE  389 (395)
T ss_dssp             EESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             EEeeCCcccCEEEEEEEEccCCCceEE
Confidence            999999999999999999988776544

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=3e-39  Score=344.14  Aligned_cols=350  Identities=19%  Similarity=0.300  Sum_probs=262.0

Q ss_pred             CCCeeeecCCc-eEecCCCeEEEEEEEEecCCCeeEEEE-CCEEccCCCCEEEeecCCccceEEEEEEcccCCCC-----
Q psy2775          11 IPPTFSKKTKP-VYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE-----   83 (785)
Q Consensus        11 ~~p~~~~~~~~-~~v~~G~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-----   83 (785)
                      .||.|...|.. +.+.+|++++|.|.+.|.|.+.|.|++ ++..+....+......+      .+|.|.+++.+|     
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~------~~L~i~~~~~~d~~~~~   75 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD------GKLVFPPFRAEDYRQEV   75 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECST------TEEEECCCCGGGCCHHH
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCC------ceEEecccChhhccccc
Confidence            47999988775 678999999999999999999999999 77777654433322222      249999999997     


Q ss_pred             -CeEEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCC---CeEEEeECCEEcccc-
Q psy2775          84 -EGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDGKLIKDR-  157 (785)
Q Consensus        84 -~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~---~~v~W~~~g~~~~~~-  157 (785)
                       +|.|+|.|.|..|.. +..+.|.+.    .+|.+...+....+.+|+.+.|.|.+.+.++   +.+.|++++..+... 
T Consensus        76 d~G~Y~C~a~n~~g~~~s~~~~v~v~----~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~  151 (388)
T 2v5m_A           76 HAQVYACLARNQFGSIISRDVHVRAV----VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG  151 (388)
T ss_dssp             HEEEEEEEEEETTEEEECCCEEEEEE----CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSS
T ss_pred             cCceEEEEEEccCCeEEecceEEEEc----cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccc
Confidence             999999999998864 345666665    3555656667788999999999999987653   689999998765321 


Q ss_pred             -----eEEEeCCEEEEEEcccCCCCc-EEEEEEEEcCCee-EEEE---EEEEeecCCCCCCCCCCCCCCCccccccceee
Q psy2775         158 -----QITSEKNTHTLTLIQCSTKDK-GRYSVKVTNKEGT-VESA---ANLNVDPYEPKESKETPPSPPPYVVSELDTLQ  227 (785)
Q Consensus       158 -----~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~-~~~~---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (785)
                           .... ....+|.|.+++.+|+ |.|+|.|.|..+. ...+   ..|.|......                     
T Consensus       152 ~~~~~~~~~-~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~---------------------  209 (388)
T 2v5m_A          152 AEYDGKYLV-LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS---------------------  209 (388)
T ss_dssp             SCBTTTEEE-CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC---------------------
T ss_pred             cCCCCcEEE-ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcC---------------------
Confidence                 1111 1224799999999999 9999999987643 2222   24555422100                     


Q ss_pred             ecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc-------cceEEEeCCEEEEEEccCCCCCC
Q psy2775         228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-------DRQITSEKNTHTLTLIQCSTKDK  300 (785)
Q Consensus       228 ~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~-------~~~~~~~~~~~~l~i~~~~~~d~  300 (785)
                         ..|..|.+.  .....+.+|+.+.|.|.+.|+|.+.+.|++++..+.       .......  ...|.|.++..+|+
T Consensus       210 ---~~p~~~~~~--~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~  282 (388)
T 2v5m_A          210 ---SAPRTPALV--QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDS  282 (388)
T ss_dssp             ---EEEECCSSC--CCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE--TTEEEESSCCGGGC
T ss_pred             ---CCCcCcccc--CCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc--cCEEEECcCCHHHC
Confidence               000001111  123456789999999999999999999999753322       1112222  23799999999999


Q ss_pred             eEEEEEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCc
Q psy2775         301 GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGT  379 (785)
Q Consensus       301 G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~  379 (785)
                      |.|+|.|.|..|.....+.|.|.. ++.+...+....+.+|+.+.|.|.+.+ |.+.++|+++|..+....         
T Consensus       283 G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~---------  352 (388)
T 2v5m_A          283 GKYLCVVNNSVGGESVETVLTVTA-PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE---------  352 (388)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEE-EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS---------
T ss_pred             eEEEEEEecCCCceeEEEEEEEeC-CCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC---------
Confidence            999999999999988888999886 444555566778899999999999987 788999999999886542         


Q ss_pred             EEEEEEcCCCCCCceEEEEEEeccceEEEEE
Q psy2775         380 IRKLLIRNISVHDEGEYTCSLPDQETSAELN  410 (785)
Q Consensus       380 ~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~  410 (785)
                       ..|.|.++..+|+|.|+|.|.|..+.....
T Consensus       353 -~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  382 (388)
T 2v5m_A          353 -SVLRIESVKKEDKGMYQCFVRNDRESAEAS  382 (388)
T ss_dssp             -SEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             -CEEEEecCChhhCEEEEEEEEcCCCcEEEE
Confidence             249999999999999999999987766544

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=6.5e-36  Score=303.37  Aligned_cols=274  Identities=22%  Similarity=0.408  Sum_probs=234.1

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....++.+....+    ...|+|.+++.+|+|.|+|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C   78 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN----TATLTVLKVTKGDAGQYTC   78 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETT----EEEEEESSCCGGGCEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCC----EEEEEEecCCcccCEEEEE
Confidence            368999999999999999999999999999999999999999998877766554332    2569999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCceecCC-CceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEEEeCCE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNT  165 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~-~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~~~  165 (785)
                      .|.|..+.....+.|.|.    .+|.+.... ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+...   ........
T Consensus        79 ~~~n~~g~~~~~~~l~V~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  154 (284)
T 2rik_A           79 YASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV  154 (284)
T ss_dssp             EEEETTEEEEEEEEEEEE----CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTE
T ss_pred             EEEECCceEEEEEEEEcc----CCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCE
Confidence            999999988888888887    466655443 4566889999999999999999999999999988654   23345567


Q ss_pred             EEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcc
Q psy2775         166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV  245 (785)
Q Consensus       166 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  245 (785)
                      ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|..                                +|.+...+...
T Consensus       155 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~--------------------------------~p~~~~~~~~~  202 (284)
T 2rik_A          155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE--------------------------------PPVFRKKPHPV  202 (284)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--------------------------------CCBCCSCCCCE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec--------------------------------CCcceeCCCcc
Confidence            8899999999999999999999999988888888873                                34555555566


Q ss_pred             eeCCCCeEEEEEEEccCCCCeEEEEECCEEcc---cceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy2775         246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  322 (785)
Q Consensus       246 ~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v  322 (785)
                      .+.+|+.+.|.|.+.|+|.+.+.|++++..+.   ...+...+....|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus       203 ~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence            78899999999999999999999999999887   334455566779999999999999999999999999998888887


Q ss_pred             e
Q psy2775         323 D  323 (785)
Q Consensus       323 ~  323 (785)
                      .
T Consensus       283 ~  283 (284)
T 2rik_A          283 K  283 (284)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=1.3e-35  Score=301.19  Aligned_cols=272  Identities=23%  Similarity=0.412  Sum_probs=231.1

Q ss_pred             cccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEecc
Q psy2775         325 GKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ  403 (785)
Q Consensus       325 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  403 (785)
                      .||.+...+....+.+|+.++|.|.+.+ +.+.++|++++..+....++.+...+....|.|.++..+|+|.|+|.+.|.
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~   83 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV   83 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence            3566777777888999999999999987 678999999999998887777766666677999999999999999999986


Q ss_pred             ceEE----EEEEEecCCcccc-cCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccC
Q psy2775         404 ETSA----ELNVVELPPEISV-PLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA  477 (785)
Q Consensus       404 ~~~~----~~~v~~~~~~~~~-~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  477 (785)
                      .+..    .+.|.. +|.+.. ......+.+|+.+.|.|.+.+ +.+.+.|++++..+....+..+...+....|.|.++
T Consensus        84 ~g~~~~~~~l~V~~-~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  162 (284)
T 2rik_A           84 AGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNL  162 (284)
T ss_dssp             TEEEEEEEEEEEEC-CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSC
T ss_pred             CceEEEEEEEEccC-CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCC
Confidence            5543    344444 444443 344556889999999999998 788999999999998888888877777889999999


Q ss_pred             CCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         478 GLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      +.+|+|.|+|.|.|. |....++.|.|..+|                                                 
T Consensus       163 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p-------------------------------------------------  193 (284)
T 2rik_A          163 SVEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------------------------------------------------  193 (284)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEECCC-------------------------------------------------
T ss_pred             CcccCEEEEEEEEcCCCceeEEEEEEEecCC-------------------------------------------------
Confidence            999999999999998 888888899988763                                                 


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                         .+...+....+.+|+.++|.|.+.|+|.|.|.|+|++..+..+.++.+..++....|.|.++.. +|+|.|+|.|.|
T Consensus       194 ---~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N  269 (284)
T 2rik_A          194 ---VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS-ADIGEYQCKASN  269 (284)
T ss_dssp             ---BCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCG-GGCEEEEEEEEE
T ss_pred             ---cceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCc-ccCEEEEEEEEe
Confidence               2333334557889999999999999999999999999999988888888888888999999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|+
T Consensus       270 ~~G~~~~~~~l~V~  283 (284)
T 2rik_A          270 DVGSYTCVGSITLK  283 (284)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEc
Confidence            99999999988875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=7.8e-37  Score=321.70  Aligned_cols=300  Identities=15%  Similarity=0.150  Sum_probs=231.0

Q ss_pred             ceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcC--------------CCCcEEEEE---cCcEEEEEEcCCCCCCceEE
Q psy2775         335 DLEVKERENAVLEVEVTS-DKADVKWFKDGQEIK--------------TSKKVTIEK---KGTIRKLLIRNISVHDEGEY  396 (785)
Q Consensus       335 ~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~--------------~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y  396 (785)
                      .+.+.+|+.++|.|.+.+ +.+.+.|++++..+.              ...++.+..   .+....|.|.++..+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            356789999999999986 678999999985321              112333221   11233499999999999999


Q ss_pred             EEEEeccceEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEc
Q psy2775         397 TCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIF  475 (785)
Q Consensus       397 ~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  475 (785)
                      +|.|.|..+...+.|...    ...+. ..+.+|+.++|.|.+.+ +.+.+.|++++..+.       ..   ...|.|.
T Consensus        83 ~C~~~n~~~~~~l~V~~~----~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------~~---~~~L~i~  147 (363)
T 1wio_A           83 ICEVEDQKEEVQLLVFGL----TANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------QG---GKTLSVS  147 (363)
T ss_dssp             EEEETTEEEEEEEEEEEE----EESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCEE-------EE---SSEEEEC
T ss_pred             EEEEEECCCcEEEEEEeC----CCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc-------cc---ceEEEEe
Confidence            999999988888887652    22222 35789999999999977 678899999876541       11   2379999


Q ss_pred             cCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         476 SAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      +++.+|+|.|+|.|.|. +.....+.|.|..++.                                              
T Consensus       148 ~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~----------------------------------------------  181 (363)
T 1wio_A          148 QLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK----------------------------------------------  181 (363)
T ss_dssp             SBCGGGCEECEEEEEETTEEEEECCEECEECCSC----------------------------------------------
T ss_pred             eCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC----------------------------------------------
Confidence            99999999999999996 4444555666664421                                              


Q ss_pred             CCCCCeEeeeeeeeeeeecCeEEEEEEEec-----CCCCceEEEeCCEEecC--------CCCeeEEe----------eC
Q psy2775         555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLS--------SPKKREIF----------DG  611 (785)
Q Consensus       555 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~i~~--------~~~~~~~~----------~~  611 (785)
                            .   +....+.+|+.++|.|.+.|     +|.|.|+|+++|..+..        +.++.+..          .+
T Consensus       182 ------~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (363)
T 1wio_A          182 ------A---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKK  252 (363)
T ss_dssp             ------S---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSS
T ss_pred             ------C---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccC
Confidence                  0   02557889999999998888     88999999999998865        33333322          33


Q ss_pred             CeEEEEEccCCCCCCceeEEEEEEcC--CcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCc
Q psy2775         612 ENIILELKEADSETDAGDYKVVATNE--LGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKP  689 (785)
Q Consensus       612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (785)
                      +..+|.|.++.. +|+|.|+|.|.|.  .|....++.|.|..                                      
T Consensus       253 ~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~--------------------------------------  293 (363)
T 1wio_A          253 LPLHLTLPQALP-QYAGSGNLTLALEAKTGKLHQEVNLVVMR--------------------------------------  293 (363)
T ss_dssp             SSCEEEESSBCG-GGCEEEEEEECBTTTTCCEEEEEEEEEEE--------------------------------------
T ss_pred             CceEEEEccCCc-CcCcEEEEEEEEhhhcCeEEEEEeEEEEE--------------------------------------
Confidence            355899999999 9999999999999  99888888887751                                      


Q ss_pred             cccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCCc--eEEeECCEEeeeccccccchhhhcccccceeeeeeceEEEEE
Q psy2775         690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPK--AEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVE  767 (785)
Q Consensus       690 ~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p~--i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~  767 (785)
                                       ..|+.++|.|.+.|.|+|.  |.|+++|..+..+.          .|.+..+...|+|.|+|.
T Consensus       294 -----------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~----------~l~i~~v~~~d~G~Y~C~  346 (363)
T 1wio_A          294 -----------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK----------REKAVWVLNPEAGMWQCL  346 (363)
T ss_dssp             -----------------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEE----------SSSEEEESSCCSEEEEEE
T ss_pred             -----------------ecCCCeeEEEEEccccCCCccEEEEeCCCceeeee----------eeeeeeeccccceeEEEE
Confidence                             1188899999999999998  99999998887543          466788899999999999


Q ss_pred             Eec
Q psy2775         768 VTS  770 (785)
Q Consensus       768 ~~~  770 (785)
                      +++
T Consensus       347 a~~  349 (363)
T 1wio_A          347 LSD  349 (363)
T ss_dssp             ECS
T ss_pred             Eec
Confidence            985

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=6.7e-36  Score=323.73  Aligned_cols=360  Identities=14%  Similarity=0.163  Sum_probs=245.9

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCC----CeeEEEECC--EEc------------cCCCCEEEeecCCccceEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYNG--EPL------------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .|...|..+.+.+|++++|.|.+.+.+.    +.|.|++++  ..+            ....++.+...+    ...+|+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~   78 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSR----TDFTLT   78 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEET----TEEEEE
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccC----CcEEEE
Confidence            4677789999999999999999988776    489999963  211            012344443322    125699


Q ss_pred             EcccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEEEeECCE
Q psy2775          76 IKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGK  152 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W~~~g~  152 (785)
                      |.+++.+|+|.|+|.|.|..+.. .....|.|.. ...+|.+...........|+.+.|.|.+.| .|.+ .|+|++||.
T Consensus        79 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~-~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~  157 (438)
T 1qgc_4           79 IDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKR-ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  157 (438)
T ss_dssp             ESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECC-CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             eCCCcCcCCeeEEEEEecCCCccccCceeEEecC-CCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCE
Confidence            99999999999999999987632 2334566632 223666665333334456889999999977 6766 899999999


Q ss_pred             EcccceEE-E-----eCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccc
Q psy2775         153 LIKDRQIT-S-----EKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE  222 (785)
Q Consensus       153 ~~~~~~~~-~-----~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  222 (785)
                      .+...... .     .++    ...|.|.++..+|+|.|+|.|.|..+....  .+.+...                   
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~-------------------  216 (438)
T 1qgc_4          158 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRN-------------------  216 (438)
T ss_dssp             EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETT-------------------
T ss_pred             EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce--ecccccc-------------------
Confidence            88765111 0     111    357999999999999999999998876422  2333211                   


Q ss_pred             cceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCC--CCeEEEEEC--CEEcc--------------------c
Q psy2775         223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP--SPKVEWYKD--GKLIK--------------------D  278 (785)
Q Consensus       223 ~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~l~--------------------~  278 (785)
                                 .++..+..+....+.+|+.++|.|.+.|.|  .+.+.|+++  +..+.                    .
T Consensus       217 -----------~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r  285 (438)
T 1qgc_4          217 -----------ECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGR  285 (438)
T ss_dssp             -----------C-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTT
T ss_pred             -----------cceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCc
Confidence                       111223334466788999999999999988  679999996  43321                    1


Q ss_pred             ceEEEe--CCEEEEEEccCCCCCCeEEEEEEEeCCC-----ceEEEEEEEEec---cccceeeeccceeEeeCccEEEEE
Q psy2775         279 RQITSE--KNTHTLTLIQCSTKDKGRYSVKVTNKEG-----TVESAANLNVDQ---GKAEFIKKLDDLEVKERENAVLEV  348 (785)
Q Consensus       279 ~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~n~~g-----~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C  348 (785)
                      ..+...  .....|.|.+++.+|+|.|+|.|.|..+     .......|.|..   .+|.+........+.+|+.++|.|
T Consensus       286 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C  365 (438)
T 1qgc_4          286 FTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGC  365 (438)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEE
T ss_pred             EEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEE
Confidence            111111  3466899999999999999999998543     222345677763   223332222233466899999999


Q ss_pred             EEcC--CCC-eEEEEECCEEcCCCCcEEEEEcCc---EEEEEEcCCCCCCceEEEEEEeccceEEEEEE
Q psy2775         349 EVTS--DKA-DVKWFKDGQEIKTSKKVTIEKKGT---IRKLLIRNISVHDEGEYTCSLPDQETSAELNV  411 (785)
Q Consensus       349 ~~~~--~~~-~v~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~v  411 (785)
                      .+.+  |.+ .++|+++|..+.......+...+.   .+.|.|.++..+| |.|+|.|.|..+...+..
T Consensus       366 ~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~  433 (438)
T 1qgc_4          366 LVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  433 (438)
T ss_dssp             EEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEE
T ss_pred             EeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceee
Confidence            9987  445 999999998765321111122332   2358999998888 999999999877655443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=4.6e-36  Score=325.04  Aligned_cols=359  Identities=14%  Similarity=0.169  Sum_probs=247.5

Q ss_pred             eeecCCcceeCCCCeEEEEEEEccCCC----CeEEEEECC--EEc--------------c-cceEEEeCCEEEEEEccCC
Q psy2775         238 ILEPLHDVSITEGESAVLSVQVGGEPS----PKVEWYKDG--KLI--------------K-DRQITSEKNTHTLTLIQCS  296 (785)
Q Consensus       238 ~~~~~~~~~~~~G~~~~l~C~~~g~p~----~~v~W~~~~--~~l--------------~-~~~~~~~~~~~~l~i~~~~  296 (785)
                      +...+....+.+|+.+.|.|.+.+.|.    +.+.|++++  ..+              . ...........+|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            445566778899999999999988876    489999963  221              1 1222334567789999999


Q ss_pred             CCCCeEEEEEEEeCCCce-EEEEEEEEec--cccceeeeccceeEeeCccEEEEEEEcC--CCC-eEEEEECCEEcCCCC
Q psy2775         297 TKDKGRYSVKVTNKEGTV-ESAANLNVDQ--GKAEFIKKLDDLEVKERENAVLEVEVTS--DKA-DVKWFKDGQEIKTSK  370 (785)
Q Consensus       297 ~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~-~v~W~~~~~~l~~~~  370 (785)
                      .+|+|.|+|.|.|..+.. ...+.|.|..  .+|.+..........+|+.+.|.|.+.+  |.+ .++|+++|..+....
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  163 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  163 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCc
Confidence            999999999999987643 2335666653  2333333222223346889999999976  445 899999999887652


Q ss_pred             cE--EEE--EcCc---EEEEEEcCCCCCCceEEEEEEeccceE--EEEEEEec-CCcccccCCCeEEecCCcEEEEEEEe
Q psy2775         371 KV--TIE--KKGT---IRKLLIRNISVHDEGEYTCSLPDQETS--AELNVVEL-PPEISVPLQDVKVSRDEKASFEIELT  440 (785)
Q Consensus       371 ~~--~~~--~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~--~~~~v~~~-~~~~~~~~~~~~v~~g~~~~l~C~~~  440 (785)
                      ..  ...  .++.   .+.|.|.++..+|+|.|+|.|.|..+.  ....+... ++.....+....+.+|+.++|.|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  243 (438)
T 1qgc_4          164 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTAS  243 (438)
T ss_dssp             EEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEE
T ss_pred             eeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEc
Confidence            11  111  1111   246999999999999999999997665  33333222 12222345567789999999999999


Q ss_pred             C-C--CceEEEEEC--CEEcc-----------------cCCCEEEEEe--CcEEEEEEccCCCCCcEEEEEEEeec-C--
Q psy2775         441 K-G--DALVKWYKD--GKEIA-----------------FSENVTLSID--GKKQKLIIFSAGLEDAGEYSCRVGDT-G--  493 (785)
Q Consensus       441 ~-~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~-g--  493 (785)
                      + +  .+.+.|+|+  +..+.                 ...++.+..+  +....|.|.+++.+|+|.|+|.|.|. +  
T Consensus       244 g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~  323 (438)
T 1qgc_4          244 GFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDE  323 (438)
T ss_dssp             SSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCC
T ss_pred             ccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCc
Confidence            7 4  468999996  44332                 2356666654  34678999999999999999999984 3  


Q ss_pred             ---cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeee
Q psy2775         494 ---DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTV  570 (785)
Q Consensus       494 ---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v  570 (785)
                         .......|.|...+.                                                .+|.+........+
T Consensus       324 ~~~~~~~~~~l~V~~~~~------------------------------------------------~~P~v~~~~~~~~~  355 (438)
T 1qgc_4          324 GFAYWGQGTVVTVSAAKT------------------------------------------------TPPSVYPLAPGSAA  355 (438)
T ss_dssp             CCCSBCCCEEEEECSSCC------------------------------------------------BCCEEEEECCCGGG
T ss_pred             cceeeCCCEEEEEecCCC------------------------------------------------CCCeEEEcCccccc
Confidence               222456677764210                                                01333333223456


Q ss_pred             eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGEN----IILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      .+|+.++|.|.+.|+ |.| .|.|+|+|..+.......+ ..++.    ++|.|.++.. +| |.|+|.|.|..|.....
T Consensus       356 ~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~-~d-g~Y~C~a~n~~g~~~~~  432 (438)
T 1qgc_4          356 AAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPASSTKVD  432 (438)
T ss_dssp             CCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCE-EETTEEEEEEEEEEEEEHH-HH-SCCEEEEEEGGGTEEEE
T ss_pred             ccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCcc-ccCCcEEEEEEEEEehhhc-CC-ceEEEEEEeCCCCccee
Confidence            789999999999998 888 9999999988753211111 12222    3699999887 78 99999999999987665


Q ss_pred             EEE
Q psy2775         645 ARV  647 (785)
Q Consensus       645 ~~l  647 (785)
                      ..|
T Consensus       433 ~~i  435 (438)
T 1qgc_4          433 KKI  435 (438)
T ss_dssp             EEC
T ss_pred             eec
Confidence            554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=297.52  Aligned_cols=282  Identities=21%  Similarity=0.331  Sum_probs=216.3

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCC-CCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK-REEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~   88 (785)
                      ..||.|...|.++.+.+|++++|.|.+.|.|.+.|.|++++..+... +..+....+.  ..+.|.|.+++. +|+|.|+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~--~~~~L~i~~~~~~~D~G~Y~   80 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDES--AGAVLRIQPLRTPRDENVYE   80 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTT--TEEEEEECSCCTTTTCSEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCC--CceEEEEecccccCCCeEEE
Confidence            57999999999999999999999999999999999999999887543 4433322211  125699999998 9999999


Q ss_pred             EEEEcCCeeEEEEeeEEEeCCCC---CCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce---EEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVNTGKP---EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSE  162 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~~~~---~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~  162 (785)
                      |.|.|..|.....+.|.|.....   ..|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....   ....
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred             EEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence            99999999887788888874321   22677777778889999999999999999999999999999886541   1112


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeec
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP  241 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  241 (785)
                      .....|.|.+++.+|+|.|+|.|.|..|..... ..+.|....                             .+|.+...
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~-----------------------------~~P~~~~~  211 (304)
T 2yd9_A          161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN-----------------------------VAPRFSIL  211 (304)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC-----------------------------EEEEEEEC
T ss_pred             CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec-----------------------------cCCcEEec
Confidence            223379999999999999999999999876644 566665321                             34666666


Q ss_pred             CCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEE
Q psy2775         242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  321 (785)
Q Consensus       242 ~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~  321 (785)
                      +....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..... ...+...|.|.++  +|+|.|+|.|.|..|....++.|.
T Consensus       212 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~-~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~  288 (304)
T 2yd9_A          212 PMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQIT  288 (304)
T ss_dssp             CCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSS-CCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccc-ccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEE
Confidence            6677889999999999999999999999999998863221 1234556888776  589999999999999999999999


Q ss_pred             Eeccc
Q psy2775         322 VDQGK  326 (785)
Q Consensus       322 v~~~~  326 (785)
                      |...+
T Consensus       289 V~~~~  293 (304)
T 2yd9_A          289 VKSLP  293 (304)
T ss_dssp             -----
T ss_pred             EecCc
Confidence            88643

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=7.9e-36  Score=314.02  Aligned_cols=304  Identities=15%  Similarity=0.202  Sum_probs=228.4

Q ss_pred             ceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc---------------cceEEE-----eCCEEEEEEccCCCCCCeEEE
Q psy2775         245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---------------DRQITS-----EKNTHTLTLIQCSTKDKGRYS  304 (785)
Q Consensus       245 ~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~---------------~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~  304 (785)
                      +.+.+|+.+.|.|.+.+.|.+.+.|++++..+.               ..++..     ......|.|.+++.+|+|.|+
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence            457789999999999999999999999985321               011111     224567999999999999999


Q ss_pred             EEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEE
Q psy2775         305 VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKL  383 (785)
Q Consensus       305 C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l  383 (785)
                      |.+.|..    ..+.|.|...    . ......+.+|+.++|.|.+.+ |.+.++|++++..+       ....+   .|
T Consensus        84 C~~~n~~----~~~~l~V~~~----~-~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~---~L  144 (363)
T 1wio_A           84 CEVEDQK----EEVQLLVFGL----T-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGK---TL  144 (363)
T ss_dssp             EEETTEE----EEEEEEEEEE----E-ESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCE-------EEESS---EE
T ss_pred             EEEEECC----CcEEEEEEeC----C-CCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-------cccce---EE
Confidence            9998863    3566666641    1 122346789999999999976 67899999987543       11222   49


Q ss_pred             EEcCCCCCCceEEEEEEeccceEEEEE----EEecCCcccccCCCeEEecCCcEEEEEEEeC------CCceEEEEECCE
Q psy2775         384 LIRNISVHDEGEYTCSLPDQETSAELN----VVELPPEISVPLQDVKVSRDEKASFEIELTK------GDALVKWYKDGK  453 (785)
Q Consensus       384 ~i~~~~~~d~G~Y~C~a~n~~~~~~~~----v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~------~~~~i~W~~~~~  453 (785)
                      .|.++..+|+|.|+|.|.|..+.....    |.. +|..   +....+.+|+.+.|.|.+.+      |.+.+.|+++|.
T Consensus       145 ~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~-~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~  220 (363)
T 1wio_A          145 SVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA-FQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA  220 (363)
T ss_dssp             EECSBCGGGCEECEEEEEETTEEEEECCEECEEC-CSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSC
T ss_pred             EEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec-CCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCC
Confidence            999999999999999999876655443    222 2222   25566889999999998876      246799999998


Q ss_pred             Eccc--------CCCEEEEE----------eCcEEEEEEccCCCCCcEEEEEEEeec---CcceeEEEEEEEcCcccccc
Q psy2775         454 EIAF--------SENVTLSI----------DGKKQKLIIFSAGLEDAGEYSCRVGDT---GDKESKATLTVEAPAVEFLT  512 (785)
Q Consensus       454 ~~~~--------~~~~~~~~----------~~~~~~L~i~~~~~~d~G~Y~C~a~n~---g~~~~~~~l~V~~~~~~~~~  512 (785)
                      .+..        ...+.+..          .+....|+|.++..+|+|.|+|.|.|.   |.....+.|.|...      
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v------  294 (363)
T 1wio_A          221 SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA------  294 (363)
T ss_dssp             CCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE------
T ss_pred             CccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe------
Confidence            8765        44444432          222448999999999999999999997   55555666666511      


Q ss_pred             cCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCc--e
Q psy2775         513 KLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS--I  590 (785)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~--v  590 (785)
                                                                                 .|++++|.|.+.|.|+|.  |
T Consensus       295 -----------------------------------------------------------~g~~~~l~C~~~g~p~p~~~i  315 (363)
T 1wio_A          295 -----------------------------------------------------------TQLQKNLTCEVWGPTSPKLML  315 (363)
T ss_dssp             -----------------------------------------------------------CCCSSSEEEEEESSCCTTCCE
T ss_pred             -----------------------------------------------------------cCCCeeEEEEEccccCCCccE
Confidence                                                                       178899999999999998  9


Q ss_pred             EEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       591 ~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      .|+|+|..+..           ...|.|.++.. +|+|.|+|.|.|. |....+..|.|
T Consensus       316 ~W~~~~~~~~~-----------~~~l~i~~v~~-~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          316 SLKLENKEAKV-----------SKREKAVWVLN-PEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             EEECSSSSCSE-----------EESSSEEEESS-CCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             EEEeCCCceee-----------eeeeeeeeecc-ccceeEEEEEecC-CeEEEecceEe
Confidence            99999987753           23377889998 9999999999975 66666777766

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=286.16  Aligned_cols=275  Identities=21%  Similarity=0.367  Sum_probs=212.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEE-CCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .+|.|...+.++.+.+|++++|.|.+.|.|. .+.|++ ++..+....++.+..++.    .++|.|.+++.+|+|.|+|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C   77 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGV----RSRLTIYNANIEDAGIYRC   77 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETT----EEEEEECSCCGGGCEEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCC----EEEEEEccCCcccCEEEEE
Confidence            5899999999999999999999999998775 899999 677777777776665442    2569999999999999999


Q ss_pred             EEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEEEeCCE
Q psy2775          90 VAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNT  165 (785)
Q Consensus        90 ~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~~~  165 (785)
                      .+.|..+.. ...+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...   .... ...
T Consensus        78 ~~~n~~g~~~~~~~~l~v~----~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~  152 (291)
T 2wim_A           78 QATDAKGQTQEATVVLEIY----QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-LAN  152 (291)
T ss_dssp             EEECSSSCEEEEEEEEEEE----CCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEE-CTT
T ss_pred             EEecccCceEEEEEEEEec----CCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEE-ccC
Confidence            999988765 456667776    4666666667788999999999999999999999999999877532   2222 223


Q ss_pred             EEEEEcccCCCCcEEEEEEEEcCCeeEE--EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCC
Q psy2775         166 HTLTLIQCSTKDKGRYSVKVTNKEGTVE--SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH  243 (785)
Q Consensus       166 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  243 (785)
                      .+|.|.++..+|+|.|+|.|.|..+...  ..+.+.|...                                |.+.....
T Consensus       153 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~--------------------------------p~~~~~~~  200 (291)
T 2wim_A          153 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP--------------------------------PAISMPQK  200 (291)
T ss_dssp             SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBC--------------------------------CCCBCSCS
T ss_pred             CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccC--------------------------------CccccCcc
Confidence            4699999999999999999998874433  3455555432                                22222222


Q ss_pred             --cceeCCCCeEEEEEEEccCCCCeEEEEECCEEccc-ceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy2775         244 --DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL  320 (785)
Q Consensus       244 --~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l  320 (785)
                        ...+.+|+.+.|.|.+.|+|.+.+.|+++|..+.. ...........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus       201 ~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  280 (291)
T 2wim_A          201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  280 (291)
T ss_dssp             EEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             cccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEE
Confidence              34577899999999999999999999999998872 233334445689999999999999999999999999999999


Q ss_pred             EEecccc
Q psy2775         321 NVDQGKA  327 (785)
Q Consensus       321 ~v~~~~~  327 (785)
                      .|..+++
T Consensus       281 ~v~~~~~  287 (291)
T 2wim_A          281 QVFVQHH  287 (291)
T ss_dssp             EC-----
T ss_pred             EEEEecc
Confidence            9987554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=5e-33  Score=283.19  Aligned_cols=274  Identities=19%  Similarity=0.298  Sum_probs=216.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecC-CCeeEEEE-CCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYY-NGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .||.|...|..+.+.+|++++|.|.+.+.| .+.+.|++ ++..+... .++.+...+.   ..++|+|.+++.+|+|.|
T Consensus         1 r~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y   77 (291)
T 1qz1_A            1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD---DSSTLTIYNANIDDAGIY   77 (291)
T ss_dssp             -CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEET---TEEEEEECSCCGGGCEEE
T ss_pred             CCcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCC---CeEEEEEecCCCCCCEEE
Confidence            378999999999999999999999998876 68999999 77766543 4444433221   135799999999999999


Q ss_pred             EEEEEcCCe-eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEEEeC
Q psy2775          88 TVVAKNREG-EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK  163 (785)
Q Consensus        88 ~C~a~~~~~-~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~  163 (785)
                      +|.|.|..+ .....+.|.|.    .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+...   .... .
T Consensus        78 ~C~~~n~~g~~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~  152 (291)
T 1qz1_A           78 KCVVTAEDGTQSEATVNVKIF----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-L  152 (291)
T ss_dssp             EEEEECTTSCEEEEEEEEEEE----CCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEE-C
T ss_pred             EEEEEcCCCCeeEEEEEEEee----ccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEE-c
Confidence            999999885 44566777776    5677777778888999999999999999999999999999887532   1222 2


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcCCeeE--EEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeec
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTV--ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP  241 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  241 (785)
                      ....|.|.++..+|+|.|+|.|.|..+..  ...+.+.|..                                +|.+...
T Consensus       153 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~--------------------------------~p~~~~~  200 (291)
T 1qz1_A          153 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV--------------------------------PPTVQAR  200 (291)
T ss_dssp             TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE--------------------------------EEEEEES
T ss_pred             cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec--------------------------------CCccccc
Confidence            23479999999999999999999876433  3345555542                                2333332


Q ss_pred             C--CcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccc-----eEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce
Q psy2775         242 L--HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV  314 (785)
Q Consensus       242 ~--~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  314 (785)
                      .  ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+...     ..........|.|.++..+|+|.|+|.|.|..|..
T Consensus       201 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  280 (291)
T 1qz1_A          201 QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ  280 (291)
T ss_dssp             CSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCce
Confidence            2  2446789999999999999999999999999988732     34444455689999999999999999999999999


Q ss_pred             EEEEEEEEec
Q psy2775         315 ESAANLNVDQ  324 (785)
Q Consensus       315 ~~~~~l~v~~  324 (785)
                      ..++.|.|..
T Consensus       281 ~~~~~l~V~~  290 (291)
T 1qz1_A          281 DASIHLKVFA  290 (291)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEc
Confidence            8888888864

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=1.9e-33  Score=304.54  Aligned_cols=371  Identities=13%  Similarity=0.200  Sum_probs=235.9

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEcc-----------------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPLQ-----------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ...|..+.+.+|++++|.|.+.+.+  .+.+.||+++  ..+.                 ...|+.+..+..  ....+|
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L   81 (444)
T 1igt_B            4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNA--KNTLYL   81 (444)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETT--TTEEEE
T ss_pred             EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCC--CCeEEE
Confidence            3456678999999999999998764  5789999853  2110                 123454443321  123569


Q ss_pred             EEcccCCCCCeEEEEEEEcCCee---EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeE
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGE---AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYK  149 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~---~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~  149 (785)
                      +|.+++.+|+|.|+|.|.+..+.   ......|.|....+.+|.+........+.+|+.+.|.|.+.|. |.+ .|.|++
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  161 (444)
T 1igt_B           82 QMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS  161 (444)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGG
T ss_pred             EECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEec
Confidence            99999999999999999987643   2233567776434445655533323335789999999999885 766 999999


Q ss_pred             CCEEcccc---eEEEe---CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCcccccc
Q psy2775         150 DGKLIKDR---QITSE---KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL  223 (785)
Q Consensus       150 ~g~~~~~~---~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  223 (785)
                      ++..+...   .....   .....|.|.++..+| |.|+|.|.|..+.......+.+.+..  ... ..   .       
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~--~~~-~~---~-------  227 (444)
T 1igt_B          162 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT--IKP-CP---P-------  227 (444)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCS--CCC-CC---C-------
T ss_pred             CCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCC--ccc-CC---c-------
Confidence            98764211   01111   113468999999889 99999999998876544444331100  000 00   0       


Q ss_pred             ceeee-cCCCCCCCee-eecCCcce-eCCCCeEEEEEEEccCC----CCeEEEEECCEEcccc----eEEEeC----CEE
Q psy2775         224 DTLQV-NTGKPEKPSI-LEPLHDVS-ITEGESAVLSVQVGGEP----SPKVEWYKDGKLIKDR----QITSEK----NTH  288 (785)
Q Consensus       224 ~~~~~-~~~~~~~p~~-~~~~~~~~-~~~G~~~~l~C~~~g~p----~~~v~W~~~~~~l~~~----~~~~~~----~~~  288 (785)
                        ... ......+|.+ +.++.... +.+|+.++|.|.+.|.+    .+.|+|+++|..+...    .....+    ..+
T Consensus       228 --~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~  305 (444)
T 1igt_B          228 --CKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVS  305 (444)
T ss_dssp             --CSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEE
T ss_pred             --cccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEE
Confidence              000 0011124554 33433333 58999999999998874    3599999999887521    111111    245


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEE---eccccceeeecc-ceeEeeCccEEEEEEEcC-C-CC-eEEEEE
Q psy2775         289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEFIKKLD-DLEVKERENAVLEVEVTS-D-KA-DVKWFK  361 (785)
Q Consensus       289 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v---~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~-~-~~-~v~W~~  361 (785)
                      .|.|.++..+|+|.|+|.|.|..+.......+.+   ...+|.+..... ...+..| .++|.|.+.+ + ++ .++|++
T Consensus       306 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k  384 (444)
T 1igt_B          306 ALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTN  384 (444)
T ss_dssp             EEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEE
Confidence            8999999999999999999999886633333322   112333332222 2223344 4999999987 3 33 899999


Q ss_pred             CCEEcCCCCcE--EEEEcCc---EEEEEEcCCCCCCceEEEEEEeccce
Q psy2775         362 DGQEIKTSKKV--TIEKKGT---IRKLLIRNISVHDEGEYTCSLPDQET  405 (785)
Q Consensus       362 ~~~~l~~~~~~--~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~  405 (785)
                      +|..+......  ....++.   .+.|.|.....+|+|.|+|.|.|...
T Consensus       385 ~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          385 NGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             CCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            99988432211  1122332   23466777777789999999998643

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=6.4e-33  Score=286.32  Aligned_cols=292  Identities=21%  Similarity=0.361  Sum_probs=215.5

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .-.+|.|..++ .+.+.+|++++|.|.+.+. |.+.+.|++++..+....++.+...      ...|+|.+++.+|+|.|
T Consensus         4 ~~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y   76 (317)
T 2y25_A            4 PFTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG------ICTLLITEFSKKDAGIY   76 (317)
T ss_dssp             SSSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----C------CEEEEETTCCSTTCSCE
T ss_pred             ccCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECC------eEEEEEccCCcccCeEE
Confidence            34689998555 5999999999999999887 7789999999999887666554422      15699999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec----------cCCCeEEEeECCEEcccc
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG----------EPSPKVEWYKDGKLIKDR  157 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g----------~p~~~v~W~~~g~~~~~~  157 (785)
                      +|.|.|..+.....+.|.|.    .+|.+...+....+..|+.+.|.|.+.+          .|.+.+.|+++|..+...
T Consensus        77 ~C~~~n~~g~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~  152 (317)
T 2y25_A           77 EVILKDDRGKDKSRLKLVDE----AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS  152 (317)
T ss_dssp             EEEEESSSCEEEEEECCSTH----HHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCC
T ss_pred             EEEEECCCCcEEEEEEEEEe----cCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCC
Confidence            99999999887766555543    2333333334455667888888887766          688999999999888653


Q ss_pred             ---eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeee-cCCCC
Q psy2775         158 ---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV-NTGKP  233 (785)
Q Consensus       158 ---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  233 (785)
                         .........+|.|.+++.+|+|.|+|.|.|..|....++.+.|......             ..+...+.. .....
T Consensus       153 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~-------------~~~~~~~~~~~~~~~  219 (317)
T 2y25_A          153 DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA-------------YAEFQRLKQAAIAEK  219 (317)
T ss_dssp             SSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHH-------------HHHHHHHHHHHHHTT
T ss_pred             CCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeecccc-------------chhhcccCCcccCcC
Confidence               2334555678999999999999999999999998888777776421000             000000000 00011


Q ss_pred             CCCeeeec-CCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccc---eEEEe-CCEEEEEEccCCCCCCeEEEEEEE
Q psy2775         234 EKPSILEP-LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSE-KNTHTLTLIQCSTKDKGRYSVKVT  308 (785)
Q Consensus       234 ~~p~~~~~-~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~---~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~  308 (785)
                      .+|.+... +....+.+|+.+.|.|.+.|+|.+.+.|+++|..+...   .+... +....|.|.++..+|+|.|+|.|.
T Consensus       220 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  299 (317)
T 2y25_A          220 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK  299 (317)
T ss_dssp             TSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEE
T ss_pred             CCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence            23444443 44568889999999999999999999999999888622   22222 456799999999999999999999


Q ss_pred             eCCCceEEEEEEEEec
Q psy2775         309 NKEGTVESAANLNVDQ  324 (785)
Q Consensus       309 n~~g~~~~~~~l~v~~  324 (785)
                      |..|....++.|.|..
T Consensus       300 N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          300 NKYGSETSDFTVSVFI  315 (317)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEc
Confidence            9999999888888874

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.6e-32  Score=279.61  Aligned_cols=267  Identities=24%  Similarity=0.342  Sum_probs=200.2

Q ss_pred             cccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEE--EcCcEEEEEEcCCCC-CCceEEEEEE
Q psy2775         325 GKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIE--KKGTIRKLLIRNISV-HDEGEYTCSL  400 (785)
Q Consensus       325 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~--~~~~~~~l~i~~~~~-~d~G~Y~C~a  400 (785)
                      .+|.+...+....+.+|+.+.|.|.+.+ |.+.++|+++|..+.... +...  .++....|.|.++.. +|+|.|+|.|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~-~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   83 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQR-FETIEFDESAGAVLRIQPLRTPRDENVYECVA   83 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTT-EEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCc-eEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence            4667777778888999999999999987 678999999999886543 3332  344456799999998 9999999999


Q ss_pred             eccceE----EEEEEEecC------CcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCC---CEEEEEe
Q psy2775         401 PDQETS----AELNVVELP------PEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSE---NVTLSID  466 (785)
Q Consensus       401 ~n~~~~----~~~~v~~~~------~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~---~~~~~~~  466 (785)
                      .|..+.    ..+.|...+      |.+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....   ++....+
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~  163 (304)
T 2yd9_A           84 QNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRS  163 (304)
T ss_dssp             ECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTT
T ss_pred             ECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCC
Confidence            986553    455555432      55666677788899999999999998 678999999999886542   2322222


Q ss_pred             CcEEEEEEccCCCCCcEEEEEEEeec-CcceeE-EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeec
Q psy2775         467 GKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNL  544 (785)
Q Consensus       467 ~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  544 (785)
                         ..|.|.+++.+|+|.|+|.|.|. |..... +.|.|.....                                    
T Consensus       164 ---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~------------------------------------  204 (304)
T 2yd9_A          164 ---GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV------------------------------------  204 (304)
T ss_dssp             ---SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCE------------------------------------
T ss_pred             ---eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeecc------------------------------------
Confidence               27999999999999999999997 544333 6677654311                                    


Q ss_pred             ccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCC
Q psy2775         545 FIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE  624 (785)
Q Consensus       545 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~  624 (785)
                                   +|.|...+....+.+|+.++|.|.+.|+|.|.|+|+|+|..+......    ..+...|.|.++   
T Consensus       205 -------------~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~----~~~~~~L~i~~~---  264 (304)
T 2yd9_A          205 -------------APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM----PVGRNVLELTDV---  264 (304)
T ss_dssp             -------------EEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSC----CBSEEEEEECSC---
T ss_pred             -------------CCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccc----cCCcEEEEEccc---
Confidence                         155655556778999999999999999999999999999998765442    245566787765   


Q ss_pred             CCceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         625 TDAGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      +|+|.|+|.|.|..|....++.|.|..
T Consensus       265 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~  291 (304)
T 2yd9_A          265 KDSANYTCVAMSSLGVIEAVAQITVKS  291 (304)
T ss_dssp             CSCEEEEEEEEETTEEEEEEEEEC---
T ss_pred             ccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            689999999999999999999988874

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=6.6e-33  Score=301.32  Aligned_cols=370  Identities=15%  Similarity=0.232  Sum_probs=229.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c--------------cCCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L--------------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~--------------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.||++.  ..   +              ....|+.+..+..  ...++|+
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~   82 (457)
T 1hzh_H            5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTS--ANTAYME   82 (457)
T ss_dssp             EECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETT--TTEEEEE
T ss_pred             ecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCC--CCEEEEE
Confidence            446678999999999999998876  6789999842  11   1              0123444433221  1235699


Q ss_pred             EcccCCCCCeEEEEEEEcCCe------------eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC
Q psy2775          76 IKSIKKREEGVYTVVAKNREG------------EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS  142 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~------------~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~  142 (785)
                      |.+++.+|+|.|+|.|.|..+            .......|.|......+|.+........+.+|+.+.|.|.+.|. |.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H           83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             ECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            999999999999999998764            12234567776544446666544444456899999999999886 64


Q ss_pred             -CeEEEeECCEEcccce---EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCC
Q psy2775         143 -PKVEWYKDGKLIKDRQ---ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS  214 (785)
Q Consensus       143 -~~v~W~~~g~~~~~~~---~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~  214 (785)
                       +.|.|+++|..+....   ....++    ...|.|.++..+| |.|+|.|.|..+.......+.+............+.
T Consensus       163 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~  241 (457)
T 1hzh_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPA  241 (457)
T ss_dssp             CCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCC
T ss_pred             CeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCC
Confidence             7999999997653211   111112    2479999999999 999999999887655444444322110000000000


Q ss_pred             CCCccccccceeeecCCCCCCCee-eecCCcce-eCCCCeEEEEEEEccCCCC----eEEEEECCEEcccce--EE--Ee
Q psy2775         215 PPPYVVSELDTLQVNTGKPEKPSI-LEPLHDVS-ITEGESAVLSVQVGGEPSP----KVEWYKDGKLIKDRQ--IT--SE  284 (785)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~-~~~G~~~~l~C~~~g~p~~----~v~W~~~~~~l~~~~--~~--~~  284 (785)
                                     .....+|.+ +.++.... +.+|+.+.|.|.+.|.|++    .|+|++++..+....  ..  ..
T Consensus       242 ---------------~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~  306 (457)
T 1hzh_H          242 ---------------PELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQY  306 (457)
T ss_dssp             ---------------CCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECT
T ss_pred             ---------------ccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecC
Confidence                           000023444 33333333 6789999999999987653    999999998875221  11  11


Q ss_pred             CCE----EEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEE---eccccceeeec-cceeEeeCccEEEEEEEcC-CC-
Q psy2775         285 KNT----HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEFIKKL-DDLEVKERENAVLEVEVTS-DK-  354 (785)
Q Consensus       285 ~~~----~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v---~~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~-~~-  354 (785)
                      ++.    ..|.|.....+|+|.|+|.|.|..+.......+.+   ...+|.+...+ ....+..|+ +.|.|.+.+ ++ 
T Consensus       307 ~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~  385 (457)
T 1hzh_H          307 NSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPS  385 (457)
T ss_dssp             TSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSS
T ss_pred             CCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECC
Confidence            121    12222233333499999999987655433333432   11233333322 222344555 999999987 33 


Q ss_pred             -CeEEEEECCEEcCCCCcE--EEEEcCcE---EEEEEcCCCCCCceEEEEEEeccce
Q psy2775         355 -ADVKWFKDGQEIKTSKKV--TIEKKGTI---RKLLIRNISVHDEGEYTCSLPDQET  405 (785)
Q Consensus       355 -~~v~W~~~~~~l~~~~~~--~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~~  405 (785)
                       +.++|+++|..+......  ....++..   +.|.|.....+|+|.|+|.|.|...
T Consensus       386 ~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          386 DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             CCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence             389999999988643211  11223322   2466666666789999999999654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=283.96  Aligned_cols=286  Identities=22%  Similarity=0.358  Sum_probs=211.3

Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEecc
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ  403 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  403 (785)
                      +|.+..+ ....+.+|+.+.|.|.+.+  +.+.++|+++|..+....++.+...  ...|.|.++..+|+|.|+|.+.|.
T Consensus         7 ~P~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            7 GPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG--ICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             CCEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----C--CEEEEETTCCSTTCSCEEEEEESS
T ss_pred             CCcEeee-eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECC--eEEEEEccCCcccCeEEEEEEECC
Confidence            3445433 3578899999999999987  4589999999999987666555432  246999999999999999999988


Q ss_pred             ceEEEEEEEec---CCcccccCCCeEEecCCcEEEEEEEeC-----------CCceEEEEECCEEcccCCCEEEEEeCcE
Q psy2775         404 ETSAELNVVEL---PPEISVPLQDVKVSRDEKASFEIELTK-----------GDALVKWYKDGKEIAFSENVTLSIDGKK  469 (785)
Q Consensus       404 ~~~~~~~v~~~---~~~~~~~~~~~~v~~g~~~~l~C~~~~-----------~~~~i~W~~~~~~~~~~~~~~~~~~~~~  469 (785)
                      .+.....+...   ++.+...+....+..|+.+.|.|.+.+           +.+.+.|++++..+..+.++.+...+..
T Consensus        84 ~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  163 (317)
T 2y25_A           84 RGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQ  163 (317)
T ss_dssp             SCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSE
T ss_pred             CCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCE
Confidence            77665443211   122222222333445666666666544           5778999999999988888888888888


Q ss_pred             EEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccc----cCCCeeEEeccCceeEEEEecCCceeeEEeec
Q psy2775         470 QKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLT----KLPSVTLVPHLGDATFQVELSSPDIQVKWLNL  544 (785)
Q Consensus       470 ~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  544 (785)
                      ..|.|.+++.+|+|.|+|.|.|. |....+..|.|......+..    ..+.+                           
T Consensus       164 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~---------------------------  216 (317)
T 2y25_A          164 IWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI---------------------------  216 (317)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred             EEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCccc---------------------------
Confidence            89999999999999999999997 76666666665421100000    00000                           


Q ss_pred             ccccccCCCCCCCCCeEeee-eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCC
Q psy2775         545 FIVPTCPLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEAD  622 (785)
Q Consensus       545 ~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~  622 (785)
                               ....+|.++.. +....+.+|+.++|.|.+.|+|.|.|.|+|+|..+..+.++.+... +...+|.|.++.
T Consensus       217 ---------~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~  287 (317)
T 2y25_A          217 ---------AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVS  287 (317)
T ss_dssp             ---------HTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCC
T ss_pred             ---------CcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCC
Confidence                     00011334433 4457899999999999999999999999999999988777666655 667799999999


Q ss_pred             CCCCceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         623 SETDAGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      . +|+|.|+|.|.|..|....++.|.|.+
T Consensus       288 ~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          288 T-ADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             S-TTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             H-HHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            9 999999999999999999999998874

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=7.1e-33  Score=299.97  Aligned_cols=366  Identities=14%  Similarity=0.164  Sum_probs=223.1

Q ss_pred             ccceeEeeCccEEEEEEEcCC---CCeEEEEEC--CEEcC-----------------CCCcEEEEEc--CcEEEEEEcCC
Q psy2775         333 LDDLEVKERENAVLEVEVTSD---KADVKWFKD--GQEIK-----------------TSKKVTIEKK--GTIRKLLIRNI  388 (785)
Q Consensus       333 ~~~~~~~~g~~~~l~C~~~~~---~~~v~W~~~--~~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~  388 (785)
                      +....+.+|+.++|.|.+.+.   .+.+.|+++  +..+.                 ...++.+..+  +....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            345678999999999999863   578999975  22210                 1235655543  34567999999


Q ss_pred             CCCCceEEEEEEeccce-------EEEEEEEe---cCCcccccCCCeEEecCCcEEEEEEEeC--CCc-eEEEEECCEEc
Q psy2775         389 SVHDEGEYTCSLPDQET-------SAELNVVE---LPPEISVPLQDVKVSRDEKASFEIELTK--GDA-LVKWYKDGKEI  455 (785)
Q Consensus       389 ~~~d~G~Y~C~a~n~~~-------~~~~~v~~---~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~-~i~W~~~~~~~  455 (785)
                      ..+|+|.|.|.+.|..+       ...+.|..   .+|.+........+.+|+.++|.|.+.+  |.+ .|.|++++..+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~  166 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  166 (444)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCC
Confidence            99999999999988532       23455542   1333332222223478999999999987  455 89999998763


Q ss_pred             ccCCCEEEEEeC---cEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEE
Q psy2775         456 AFSENVTLSIDG---KKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE  531 (785)
Q Consensus       456 ~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (785)
                      ...........+   ..+.|+|.++..+| |.|+|.|.|. +.......+.+..+.. +                  .|.
T Consensus       167 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~-~------------------~~~  226 (444)
T 1igt_B          167 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI-K------------------PCP  226 (444)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSC-C------------------CCC
T ss_pred             CeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCc-c------------------cCC
Confidence            211000001111   12569999999899 9999999997 5443333333221100 0                  000


Q ss_pred             ecCCceeeEEeecccccccCCCCCCCCCeE-eeeeeeee-eeecCeEEEEEEEecCC---C-CceEEEeCCEEecCCCCe
Q psy2775         532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLF-IERFEEKT-VKEKGTIRLMAKVKASP---A-PSIVWFRNNKPLLSSPKK  605 (785)
Q Consensus       532 ~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~-~~~~~~~~-v~~g~~v~l~C~~~g~P---~-p~v~W~~~~~~i~~~~~~  605 (785)
                                     ...|.......+|.+ +.++.... +.+|++++|.|.+.|.|   + +.|+|+|+|..+......
T Consensus       227 ---------------~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~  291 (444)
T 1igt_B          227 ---------------PCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ  291 (444)
T ss_dssp             ---------------CCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCB
T ss_pred             ---------------ccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccc
Confidence                           000101111113444 33333333 68999999999999984   3 599999999988654322


Q ss_pred             e-EEeeC----CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcc
Q psy2775         606 R-EIFDG----ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQ  680 (785)
Q Consensus       606 ~-~~~~~----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  680 (785)
                      . ....+    ..++|.|.++.. +|+|.|+|.|.|..|....+..+.+. .                            
T Consensus       292 ~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~~~~~~~v~~~-~----------------------------  341 (444)
T 1igt_B          292 THREDYNSTLRVVSALPIQHQDW-MSGKEFKCKVNNKDLPAPIERTISKP-K----------------------------  341 (444)
T ss_dssp             CCEEECSSSEEEEEEEECCHHHH-HTTCEEEEEEECTTCSSCEEEEEECC-C----------------------------
T ss_pred             cceeCCCCcEEEEEEEEEcHHHh-ccCCcEEEEEEcCCCCCceEEEEecc-C----------------------------
Confidence            1 11212    245799999999 99999999999999977433333220 0                            


Q ss_pred             eeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEec-CCCC-ceEEeECCEEeeecccccc--chh----hhcccc
Q psy2775         681 STEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPP-KAEWTVNGTVIVPSKRVKG--KAE----FIKKLD  752 (785)
Q Consensus       681 ~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g-~P~p-~i~W~~~~~~~~~~~~~~~--~~~----~~~~l~  752 (785)
                              .+..+|.+.........+..| .++|.|.+.| .|+| .|+|++||..+........  ..+    ....|.
T Consensus       342 --------~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~  412 (444)
T 1igt_B          342 --------GSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLR  412 (444)
T ss_dssp             --------CCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEE
T ss_pred             --------CCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEE
Confidence                    122445543322222223345 5999999999 5666 8999999999854322211  111    111233


Q ss_pred             cceeeeeeceEEEEEEeccc
Q psy2775         753 DLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       753 ~~~v~~~~~~~~~c~~~~~~  772 (785)
                      +......|.|.|+|.+.++.
T Consensus       413 i~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          413 VEKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             EEHHHHHTCCCEEEEEECTT
T ss_pred             EChHHhcCCCeEEEEEECCC
Confidence            33333345899999999854

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=272.53  Aligned_cols=268  Identities=20%  Similarity=0.353  Sum_probs=207.3

Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcCCCCeEEEEE-CCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccc
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE  404 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  404 (785)
                      ++.+...+....+.+|+.+.|.|.+.+.++.+.|++ +|..+....++.+..++....|.|.++..+|+|.|+|.+.|..
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~   83 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK   83 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCCSEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCCCceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEeccc
Confidence            455666677788999999999999998767999999 7888877778888888877789999999999999999999865


Q ss_pred             eEE---EEEE-EecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccC--CCEEEEEeCcEEEEEEccC
Q psy2775         405 TSA---ELNV-VELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFS--ENVTLSIDGKKQKLIIFSA  477 (785)
Q Consensus       405 ~~~---~~~v-~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~  477 (785)
                      +..   .+.+ +..++.+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+...  .++.+..++   .|.|.++
T Consensus        84 g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~v  160 (291)
T 2wim_A           84 GQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNI  160 (291)
T ss_dssp             SCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTS---CEEETTC
T ss_pred             CceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCC---CEEEEec
Confidence            432   2222 234556666667788999999999999988 67889999999887643  333333232   6999999


Q ss_pred             CCCCcEEEEEEEeec-Ccce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         478 GLEDAGEYSCRVGDT-GDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      ..+|+|.|+|.|.|. +...  ....+.|..+|.                                              
T Consensus       161 ~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~----------------------------------------------  194 (291)
T 2wim_A          161 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA----------------------------------------------  194 (291)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCC----------------------------------------------
T ss_pred             chhhCEEEEEEEEECCCCeeEEeeEEEEeccCCc----------------------------------------------
Confidence            999999999999997 4433  345566655431                                              


Q ss_pred             CCCCCeEeeee--eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         555 PGQAPLFIERF--EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       555 ~~~~p~~~~~~--~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                            +....  ....+.+|+.++|.|.+.|+|.|.|.|+++|..+..+.++.+  .+...+|.|.++.. +|+|.|+|
T Consensus       195 ------~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~--~~~~~~L~i~~~~~-~d~G~Y~C  265 (291)
T 2wim_A          195 ------ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIIN-SDGGPYVC  265 (291)
T ss_dssp             ------CBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEE--CSTTCEEEEESCCS-TTCEEEEE
T ss_pred             ------cccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEE--cCCccEEEEeeCCc-ccCEEEEE
Confidence                  11111  144678999999999999999999999999999987765433  34456799999999 99999999


Q ss_pred             EEEcCCcceEEEEEEEEEe
Q psy2775         633 VATNELGSATHGARVTVDV  651 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~~  651 (785)
                      .|.|..|..++++.|.|..
T Consensus       266 ~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          266 RATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             EEEETTEEEEEEEEEEC--
T ss_pred             EEEECCCceeeeEEEEEEE
Confidence            9999999999999999874

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=2.5e-31  Score=290.02  Aligned_cols=375  Identities=15%  Similarity=0.192  Sum_probs=236.0

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---cc--------------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---LQ--------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +..|..+.+.+|++++|.|.+.+.+  .+.+.||++.  ..   +.              ...|+.+..+..  ....+|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L   82 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTS--ATTAYM   82 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCC--CCeEEE
Confidence            4567889999999999999998764  5789999963  11   10              022333333211  123569


Q ss_pred             EEcccCCCCCeEEEEEEEcCCee------EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-C-eE
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGE------AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-P-KV  145 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~------~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~-~v  145 (785)
                      +|.+++.+|+|.|.|.+.+..+.      ....+.|.|....+.+|.+..... ..+.+|+.+.|.|.+.|. |. + .|
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v  161 (475)
T 1iga_A           83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSV  161 (475)
T ss_pred             EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEE
Confidence            99999999999999999987652      223456666543344566554322 223689999999999886 55 4 99


Q ss_pred             EEeECCEEcccce---EE-EeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeE-EEEEEEEeecCCCCCCCCCCCCCC
Q psy2775         146 EWYKDGKLIKDRQ---IT-SEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTV-ESAANLNVDPYEPKESKETPPSPP  216 (785)
Q Consensus       146 ~W~~~g~~~~~~~---~~-~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~  216 (785)
                      .|++++.......   .. ..++    ...|.|..+..+|+|.|+|.|.|..+.. +..+.+.|...+.  .       .
T Consensus       162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~--~-------~  232 (475)
T 1iga_A          162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPP--T-------P  232 (475)
T ss_pred             EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcc--c-------c
Confidence            9999885432111   11 0111    2368888888899999999999988632 2223332311000  0       0


Q ss_pred             CccccccceeeecCCCCCCCee-eecCCcceeCCCCeEEEEEEEccCCC---CeEEEEECCEEcccc----eEEE-e---
Q psy2775         217 PYVVSELDTLQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDGKLIKDR----QITS-E---  284 (785)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~G~~~~l~C~~~g~p~---~~v~W~~~~~~l~~~----~~~~-~---  284 (785)
                      .....     ........+|.+ +.++....+.+|+.+.|.|.+.|.++   +.|+|  ++..+...    .... .   
T Consensus       233 ~~~~~-----~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~  305 (475)
T 1iga_A          233 SPSTP-----PTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCY  305 (475)
T ss_pred             ccccc-----ccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCE
Confidence            00000     000000013443 33343444689999999999988754   59999  44333211    0111 0   


Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEE--eccccceeee-ccceeEeeCccEEEEEEEcC-CC--CeEE
Q psy2775         285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DQGKAEFIKK-LDDLEVKERENAVLEVEVTS-DK--ADVK  358 (785)
Q Consensus       285 ~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v--~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~-~~--~~v~  358 (785)
                      ...+.|.|.++..+|+|.|+|.|.|..+.......|.+  ...+|.+... .....+.+|+.+.|.|.+.+ ++  +.++
T Consensus       306 ~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~  385 (475)
T 1iga_A          306 SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVR  385 (475)
T ss_pred             EEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEE
Confidence            12457999999999999999999999887654444532  1233433332 23334678999999999987 23  4999


Q ss_pred             EEECCEEcCCCCcE----EEE---EcCc---EEEEEEcCCCCCCceEEEEEEeccceEEEE
Q psy2775         359 WFKDGQEIKTSKKV----TIE---KKGT---IRKLLIRNISVHDEGEYTCSLPDQETSAEL  409 (785)
Q Consensus       359 W~~~~~~l~~~~~~----~~~---~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~  409 (785)
                      |+++|..+......    ...   .+|.   .+.|.|.....+|+|.|+|.|.|......+
T Consensus       386 W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~~~  446 (475)
T 1iga_A          386 WLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPLAF  446 (475)
T ss_pred             EEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCCCcc
Confidence            99999998765311    112   2232   245788888888999999999997654433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=5.4e-31  Score=268.15  Aligned_cols=271  Identities=18%  Similarity=0.352  Sum_probs=205.2

Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcCC--CCeEEEEE-CCEEcCCCC-cEEEEE-cCcEEEEEEcCCCCCCceEEEEEE
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFK-DGQEIKTSK-KVTIEK-KGTIRKLLIRNISVHDEGEYTCSL  400 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~v~W~~-~~~~l~~~~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a  400 (785)
                      ++.+...+....+.+|+.+.|.|.+.+.  .+.++|++ +|..+.... ++.+.. ++....|.|.++..+|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            3455566777889999999999999883  48999999 787776433 444433 345567999999999999999999


Q ss_pred             eccce---EEEEEE-EecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEc
Q psy2775         401 PDQET---SAELNV-VELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIF  475 (785)
Q Consensus       401 ~n~~~---~~~~~v-~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  475 (785)
                      .|..+   +..+.+ +..+|.+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+............ ...|.|.
T Consensus        82 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~L~i~  160 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-NNYLQIR  160 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECT-TSCEEET
T ss_pred             EcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEcc-CCcEEEc
Confidence            98653   223333 234566667777888999999999999988 67889999999887554322222211 1369999


Q ss_pred             cCCCCCcEEEEEEEeec-Ccce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         476 SAGLEDAGEYSCRVGDT-GDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~-g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      ++..+|+|.|+|.|.|. +...  ....|.|..+|                                             
T Consensus       161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p---------------------------------------------  195 (291)
T 1qz1_A          161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP---------------------------------------------  195 (291)
T ss_dssp             TCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEE---------------------------------------------
T ss_pred             cCccccCeEEEEEEEecCCCceeeEEEEEEEecCC---------------------------------------------
Confidence            99999999999999996 3333  34556665442                                             


Q ss_pred             CCCCCCCeEeee--eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCC--eeEEeeCCeEEEEEccCCCCCCce
Q psy2775         553 GSPGQAPLFIER--FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEADSETDAG  628 (785)
Q Consensus       553 ~~~~~~p~~~~~--~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~--~~~~~~~~~~~L~i~~~~~~~d~G  628 (785)
                             .+...  +....+.+|+.++|.|.+.|+|.|.+.|+++|..+..+..  ..........+|.|.++.. +|+|
T Consensus       196 -------~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G  267 (291)
T 1qz1_A          196 -------TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK-NDEA  267 (291)
T ss_dssp             -------EEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCG-GGCE
T ss_pred             -------cccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecCh-hcCE
Confidence                   22211  2355788999999999999999999999999999876542  2333444556899999999 9999


Q ss_pred             eEEEEEEcCCcceEEEEEEEEE
Q psy2775         629 DYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       629 ~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .|+|.|.|..|....++.|.|.
T Consensus       268 ~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          268 EYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCceEEEEEEEEE
Confidence            9999999999999988888886

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=3e-31  Score=273.08  Aligned_cols=280  Identities=21%  Similarity=0.312  Sum_probs=208.0

Q ss_pred             ceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccceE---EEE
Q psy2775         335 DLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETS---AEL  409 (785)
Q Consensus       335 ~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~---~~~  409 (785)
                      ...+.+|+.+.|.|.+..  |.+.++|++++..+....++.+...+..+.|.|.++..+|+|.|+|.+.|..+.   ..+
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l   89 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI   89 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEE
Confidence            456788999999988864  678999999999999888888888887788999999999999999999985543   222


Q ss_pred             EEEe-----------cCCcccccC-CCeEEecCCcEEEEEEEe-C-CCceEEEEECCEEcccCCCEEEEEe--CcEEEEE
Q psy2775         410 NVVE-----------LPPEISVPL-QDVKVSRDEKASFEIELT-K-GDALVKWYKDGKEIAFSENVTLSID--GKKQKLI  473 (785)
Q Consensus       410 ~v~~-----------~~~~~~~~~-~~~~v~~g~~~~l~C~~~-~-~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~L~  473 (785)
                      .+..           .+|.+...+ ....+.+|+.+.|.|.+. + +.+.+.|++++..+....++.+..+  +....|.
T Consensus        90 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~  169 (312)
T 2y23_A           90 DEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF  169 (312)
T ss_dssp             CHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEE
T ss_pred             EEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEE
Confidence            2211           044444333 367788999999999998 5 7888999999999988887777665  4567899


Q ss_pred             EccCCCCCcEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       474 i~~~~~~d~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      |.+++.+|+|.|+|.|.|. .......+.+...........+.....+                               .
T Consensus       170 i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~  217 (312)
T 2y23_A          170 MEKLQDEDEGTYTFQLQDG-KATNHSTVVLVGDVFKKLQKEAEFQRQE-------------------------------W  217 (312)
T ss_dssp             ESCCCGGGCEEEEEEEESS-SCEEEEEEEECTHHHHHHHHHHHHHHHH-------------------------------H
T ss_pred             EccCCcccCEeEEEEEEeC-CceEEEEEEEcchhhhhhcccccccccc-------------------------------h
Confidence            9999999999999999873 2333344444322110000000000000                               0


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      ....+|.|...+. ..+.+|+.++|.|.+.|.|.| .|.|+|+|..+..+.++.+.  ++..+|.|.++.. +|+|.|+|
T Consensus       218 ~~~~~p~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~-~d~G~Y~C  293 (312)
T 2y23_A          218 IRKQGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSK-KDAGIYEV  293 (312)
T ss_dssp             HHHHSSEEEEEEE-EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSG-GGCEEEEE
T ss_pred             hhccCCceeecce-EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCH-HHCEEEEE
Confidence            0001256665444 788999999999999999998 99999999999766555433  4567899999999 99999999


Q ss_pred             EEEcCCcceEEEEEEEEE
Q psy2775         633 VATNELGSATHGARVTVD  650 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~  650 (785)
                      .|.|..|....++.|.|+
T Consensus       294 ~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          294 ILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             EEESTTCCEEEEEEECSC
T ss_pred             EEEcCCCceeeeeEEEec
Confidence            999999999998888764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.98  E-value=9.2e-31  Score=269.22  Aligned_cols=275  Identities=18%  Similarity=0.219  Sum_probs=202.5

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCC-----eeEEEECCEEc-------------cCCCCEEEeecCC-ccceEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEP-----DLLWYYNGEPL-------------QETDEVVFSDQSD-MHSYVSIVT   75 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~-----~i~W~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~L~   75 (785)
                      +...|..+.+..|++++|.|.+.+.+.+     .|.|+|++...             ....+..+..... ......+|+
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            5677889999999999999999887654     48999987532             2223333322111 111224599


Q ss_pred             EcccCCCCCeEEEEEEEc-CCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEe-ccCCCeEEEeECCEE
Q psy2775          76 IKSIKKREEGVYTVVAKN-REGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG-GEPSPKVEWYKDGKL  153 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~-~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~-g~p~~~v~W~~~g~~  153 (785)
                      |.+++.+|+|.|+|.|.+ ..+.....+.|.+.    .+|.+........+..|+.+.+.|.+. +.|.+.+.|++++..
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~----~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~  158 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL----AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG  158 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCB----BCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeec----cCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc
Confidence            999999999999999864 45566666666665    456666555666677888999999874 789999999999887


Q ss_pred             cccceEEEe--CC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE--EEEEeecCCCCCCCCCCCCCCCccccccce
Q psy2775         154 IKDRQITSE--KN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESA--ANLNVDPYEPKESKETPPSPPPYVVSELDT  225 (785)
Q Consensus       154 ~~~~~~~~~--~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~  225 (785)
                      +........  .+    .+.|.|.....+|+|.|+|.|.|..+.....  +.|.|.                        
T Consensus       159 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~------------------------  214 (313)
T 4fqp_A          159 MPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY------------------------  214 (313)
T ss_dssp             EEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC------------------------
T ss_pred             ccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc------------------------
Confidence            754422211  11    2468899999999999999999987654443  444443                        


Q ss_pred             eeecCCCCCCCeee-ecCCcceeCCCCeEEEEEEEccCCCC-eEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEE
Q psy2775         226 LQVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY  303 (785)
Q Consensus       226 ~~~~~~~~~~p~~~-~~~~~~~~~~G~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y  303 (785)
                              .+|.+. .......+.+|+.++|.|.+.|+|.| .|+|+++|..+........   .+|.|.++..+|+|.|
T Consensus       215 --------~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~---~~L~i~~v~~~d~G~Y  283 (313)
T 4fqp_A          215 --------YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQG---AQLLIRPVDKPINTTL  283 (313)
T ss_dssp             --------EEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEET---TEEEECCCSSCCEEEE
T ss_pred             --------cCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeC---CEEEECcCChhhCEEE
Confidence                    234443 34445567788999999999999988 6999999998875443322   2799999999999999


Q ss_pred             EEEEEeCCCceEEEEEEEEeccccc
Q psy2775         304 SVKVTNKEGTVESAANLNVDQGKAE  328 (785)
Q Consensus       304 ~C~~~n~~g~~~~~~~l~v~~~~~~  328 (785)
                      +|.|.|..|....++.|.|.+.||-
T Consensus       284 ~C~a~N~~G~~~~~~~l~V~~~PP~  308 (313)
T 4fqp_A          284 ICNVTNALGARQAELTVQVKEGPPH  308 (313)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCC--
T ss_pred             EEEEEeCCCcEEEEEEEEEEeCCCC
Confidence            9999999999999999999987764

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.98  E-value=4e-31  Score=268.82  Aligned_cols=265  Identities=14%  Similarity=0.158  Sum_probs=203.1

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...+..+.+.+|++++|.|.+.|    .+.|++++..+    . .....+      ++|.|.+++.+|+|.|+|
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~-~~~~~~------~~L~i~~~~~~d~G~Y~C   74 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----E-MVENKK------NEWIQEKAEATRTGTYTC   74 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS----C-EEEECS------SEEEETTCCGGGCEEEEE
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce----e-eecCCC------ceEEEeccCHHhCeEEEE
Confidence            46899999999999999999999999876    89999999766    1 111222      459999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCC-CeEEEe-ECCEEcccceEEEeCCEEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS-PKVEWY-KDGKLIKDRQITSEKNTHT  167 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~-~~v~W~-~~g~~~~~~~~~~~~~~~~  167 (785)
                      .|.|  |. ...+.|.|.    .+|.+........+.+|+.+.|.|.+.+ |. +.+.|+ +||..+.............
T Consensus        75 ~~~n--g~-~~~~~l~V~----~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~  146 (290)
T 2o26_X           75 SNSN--GL-TSSIYVFVR----DPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAG  146 (290)
T ss_dssp             EESS--SC-EEEEEEEEE----CSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTE
T ss_pred             EeeC--Cc-cEEEEEEEe----CCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCC
Confidence            9999  43 556677776    3444445556788889999999999985 77 899995 6888876543322222347


Q ss_pred             EEEcccCCCCcE-EEEEEEEcCCeeEEE-EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcc
Q psy2775         168 LTLIQCSTKDKG-RYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV  245 (785)
Q Consensus       168 L~i~~~~~~d~G-~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  245 (785)
                      |.|.++..+|+| .|+|.|.|..+.... .+.|.|....                            ..+|.+...+...
T Consensus       147 L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~----------------------------~~~P~i~~~~~~~  198 (290)
T 2o26_X          147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI----------------------------KAIPVVSVPETSH  198 (290)
T ss_dssp             EEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC----------------------------CSCCEEECSCSBC
T ss_pred             EEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC----------------------------CCCCccccCCCcc
Confidence            999999999999 999999998665443 4777776321                            1456776666677


Q ss_pred             eeCCCCeEEEEEEEccCCCCe-EEEEECCEEc----c---cceEE---EeCCEEEEEEccCCCCCCeEEEEEEEeCCCce
Q psy2775         246 SITEGESAVLSVQVGGEPSPK-VEWYKDGKLI----K---DRQIT---SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV  314 (785)
Q Consensus       246 ~~~~G~~~~l~C~~~g~p~~~-v~W~~~~~~l----~---~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  314 (785)
                      .+.+|+.+.|.|.+.|.|.+. +.|++++..+    .   .....   .......|.|.++..+|+|.|+|.|.|..|..
T Consensus       199 ~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~  278 (290)
T 2o26_X          199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA  278 (290)
T ss_dssp             CCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             eEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE
Confidence            889999999999999999986 9999998763    2   11111   12335689999999999999999999999999


Q ss_pred             EEEEEEEEecc
Q psy2775         315 ESAANLNVDQG  325 (785)
Q Consensus       315 ~~~~~l~v~~~  325 (785)
                      ...+.|.|...
T Consensus       279 ~~~~~l~V~~~  289 (290)
T 2o26_X          279 NVTTTLKVVEK  289 (290)
T ss_dssp             EEEEEECC---
T ss_pred             EEEEEEEEEeC
Confidence            88888888753

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.97  E-value=1.7e-30  Score=283.59  Aligned_cols=374  Identities=12%  Similarity=0.133  Sum_probs=228.6

Q ss_pred             ccceeEeeCccEEEEEEEcCC---CCeEEEEECC--EEcC-----------------CCCcEEEEEc--CcEEEEEEcCC
Q psy2775         333 LDDLEVKERENAVLEVEVTSD---KADVKWFKDG--QEIK-----------------TSKKVTIEKK--GTIRKLLIRNI  388 (785)
Q Consensus       333 ~~~~~~~~g~~~~l~C~~~~~---~~~v~W~~~~--~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~  388 (785)
                      +....+.+|+.++|.|.+.+.   ...+.|+++.  ..+.                 ...++.+..+  +....|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (475)
T 1iga_A            8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (475)
T ss_pred             CCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCC
Confidence            456788999999999999863   5689999852  2110                 1234554443  33456999999


Q ss_pred             CCCCceEEEEEEeccce----------EEEEEEEe---cCCcccccCCCeEEecCCcEEEEEEEeC--CC-c-eEEEEEC
Q psy2775         389 SVHDEGEYTCSLPDQET----------SAELNVVE---LPPEISVPLQDVKVSRDEKASFEIELTK--GD-A-LVKWYKD  451 (785)
Q Consensus       389 ~~~d~G~Y~C~a~n~~~----------~~~~~v~~---~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~-~-~i~W~~~  451 (785)
                      ..+|+|.|.|.+.+..+          ...+.|..   .+|.+.... ...+.+|+.++|.|.+.+  |. + .|.|+++
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~  166 (475)
T 1iga_A           88 RPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-LCSTQPDGNVVIACLVQGFFPQEPLSVTWSES  166 (475)
T ss_pred             ChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-ccccCCCCeEEEEEEEeeecCCCceEEEEcCC
Confidence            99999999999987642          23455543   133333322 112368999999999998  33 3 8999998


Q ss_pred             CEEcccCCCEEEE--EeCc---EEEEEEccCCCCCcEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCce
Q psy2775         452 GKEIAFSENVTLS--IDGK---KQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA  526 (785)
Q Consensus       452 ~~~~~~~~~~~~~--~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  526 (785)
                      +............  .++.   .+.|+|..+..+|+|.|+|.|.|.+....+..+.+..+..      +...        
T Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~------~~~~--------  232 (475)
T 1iga_A          167 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPST------PPTP--------  232 (475)
T ss_pred             CcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccC------cccc--------
Confidence            7532111000010  1111   2468898998999999999999973333333333222110      0000        


Q ss_pred             eEEEEecCCceeeEEeecccccccCCCCCCCCCeE-eeeeeeeeeeecCeEEEEEEEecCCC---CceEEEeCCEEecCC
Q psy2775         527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPLLSS  602 (785)
Q Consensus       527 ~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~l~C~~~g~P~---p~v~W~~~~~~i~~~  602 (785)
                      ...|.                 .|..... .+|.+ +..+....+.+|++++|.|.+.|.|+   +.|+|  ++..+...
T Consensus       233 ~~~~~-----------------~~~~~~~-~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~  292 (475)
T 1iga_A          233 SPSTP-----------------PTPSPSC-CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSA  292 (475)
T ss_pred             ccccc-----------------ccCCCCC-CCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCc
Confidence            00000                 0100001 12333 33333444689999999999999854   69999  44444322


Q ss_pred             CCe-eEEe-eC---CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCC
Q psy2775         603 PKK-REIF-DG---ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS  677 (785)
Q Consensus       603 ~~~-~~~~-~~---~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~  677 (785)
                      ... .... ++   ..++|.|.++.. +|+|.|+|.|.|..|.......|.+.                           
T Consensus       293 ~~~~~~~~~~g~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~~~~~~~~~v~~~---------------------------  344 (475)
T 1iga_A          293 VQGPPERDLCGCYSVSSVLPGCAEPW-NHGKTFTCTAAYPESKTPLTATLSKS---------------------------  344 (475)
T ss_pred             cccCceECCCCCEEEEEEEEEchHHh-ccCCcEEEEEEcCCCCCceEEEeecC---------------------------
Confidence            111 1111 11   345799999999 99999999999999986554544331                           


Q ss_pred             CcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCC--CceEEeECCEEeeecccccc----c-----hh
Q psy2775         678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPP--PKAEWTVNGTVIVPSKRVKG----K-----AE  746 (785)
Q Consensus       678 ~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~--p~i~W~~~~~~~~~~~~~~~----~-----~~  746 (785)
                                 .+..+|.+.........+..|+.++|.|.+.|+++  +.|.|+|||..+..+.....    .     ..
T Consensus       345 -----------~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt  413 (475)
T 1iga_A          345 -----------GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTT  413 (475)
T ss_pred             -----------CCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCc
Confidence                       12245655443333333678999999999999743  48999999999876641111    1     01


Q ss_pred             --hhcccccceeeeeeceEEEEEEeccc----ceeEEeec
Q psy2775         747 --FIKKLDDLEVKERENAVLEVEVTSDK----ADVKWFKN  780 (785)
Q Consensus       747 --~~~~l~~~~v~~~~~~~~~c~~~~~~----~~~~w~~~  780 (785)
                        ....|.+......+.|.|+|.+.++.    ..+.|...
T Consensus       414 ~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~~~~~~~~~~  453 (475)
T 1iga_A          414 FAVTSILRVAAEDWKKGDTFSCMVGHEALPLAFTQKTIDR  453 (475)
T ss_pred             EEEEEEEEEChHHhcCCCEEEEEEEcCCCCCcceEEEEec
Confidence              11244444445567899999999843    34578654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=4e-34  Score=308.62  Aligned_cols=367  Identities=14%  Similarity=0.197  Sum_probs=232.5

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEc----c-------------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPL----Q-------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~----~-------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ...+..+.+.+|++++|.|.+.+.+  .+.|.|++++  ..+    .             ...|+.+..+..  ....+|
T Consensus         3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L   80 (434)
T 1igy_B            3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRS--SNTANI   80 (434)
T ss_dssp             EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGG--GCBBCE
T ss_pred             eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECC--CCEEEE
Confidence            3456778999999999999998764  5789999863  211    0             023444332211  112459


Q ss_pred             EEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeECCE
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGK  152 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~~g~  152 (785)
                      +|.+++.+|+|.|+|.|.|..+.......|.|....+.+|.+........+.+|+.+.|.|.+.|. |.+ .|.|+++|.
T Consensus        81 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~  160 (434)
T 1igy_B           81 HLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  160 (434)
T ss_dssp             EECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTB
T ss_pred             EECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCc
Confidence            999999999999999999864433344566776434445665533333345789999999999886 666 999999987


Q ss_pred             Ecccce---EEEeC---CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCcccccccee
Q psy2775         153 LIKDRQ---ITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL  226 (785)
Q Consensus       153 ~~~~~~---~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (785)
                      .+....   ....+   ....|.|.++..+| |.|+|.|.|..+.......+.+......      ..            
T Consensus       161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~------v~------------  221 (434)
T 1igy_B          161 SSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCK------PC------------  221 (434)
T ss_dssp             CSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCC------CC------------
T ss_pred             CCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCc------cc------------
Confidence            542110   11111   13468999999889 9999999999886443333332210000      00            


Q ss_pred             eecCCCCC-CCeeeecCCcce-eCCCCeEEEEEEEccCC----CCeEEEEECCEEcccce---E-EEeC----CEEEEEE
Q psy2775         227 QVNTGKPE-KPSILEPLHDVS-ITEGESAVLSVQVGGEP----SPKVEWYKDGKLIKDRQ---I-TSEK----NTHTLTL  292 (785)
Q Consensus       227 ~~~~~~~~-~p~~~~~~~~~~-~~~G~~~~l~C~~~g~p----~~~v~W~~~~~~l~~~~---~-~~~~----~~~~l~i  292 (785)
                       . ...+. +..++.++.... +.+|+.+.|.|.+.|.+    .+.|.|++++..+....   . ...+    ..+.|.|
T Consensus       222 -~-~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  299 (434)
T 1igy_B          222 -I-CTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPI  299 (434)
T ss_dssp             -C-CCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEEC
T ss_pred             -c-CCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEE
Confidence             0 00000 122333333222 78999999999999874    35899999997764211   0 0111    2346999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCceEEEEEEEE--e-ccccceeeeccceeEeeCccEEEEEEEcC-CC--CeEEEEECCEEc
Q psy2775         293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV--D-QGKAEFIKKLDDLEVKERENAVLEVEVTS-DK--ADVKWFKDGQEI  366 (785)
Q Consensus       293 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v--~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~--~~v~W~~~~~~l  366 (785)
                      .++..+|+|.|+|.|.|..|.......+.+  . ..+|.+...+.......|+.++|.|.+.+ ++  +.++|+++|..+
T Consensus       300 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l  379 (434)
T 1igy_B          300 MHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAP  379 (434)
T ss_dssp             CHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCC
T ss_pred             CHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEec
Confidence            999999999999999998876432222321  1 12333333332222345678999999987 33  389999999988


Q ss_pred             CCCCcEEE--EEcCc---EEEEEEcCCCCCCceEEEEEEeccce
Q psy2775         367 KTSKKVTI--EKKGT---IRKLLIRNISVHDEGEYTCSLPDQET  405 (785)
Q Consensus       367 ~~~~~~~~--~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~  405 (785)
                      ........  ..+|.   .+.|.|.....+|+|.|+|.|.|...
T Consensus       380 ~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          380 ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             SCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             CCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence            53221111  22332   23477777777789999999998643

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.97  E-value=1.5e-31  Score=290.59  Aligned_cols=348  Identities=13%  Similarity=0.189  Sum_probs=213.2

Q ss_pred             CCcceeCCCCeEEEEEEEccCC--CCeEEEEEC--CEE---cc---------------cceEE--Ee--CCEEEEEEccC
Q psy2775         242 LHDVSITEGESAVLSVQVGGEP--SPKVEWYKD--GKL---IK---------------DRQIT--SE--KNTHTLTLIQC  295 (785)
Q Consensus       242 ~~~~~~~~G~~~~l~C~~~g~p--~~~v~W~~~--~~~---l~---------------~~~~~--~~--~~~~~l~i~~~  295 (785)
                      +....+.+|+.++|.|.+.+.+  .+.+.|+|+  +..   +.               ..++.  ..  .....|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            3456788999999999998876  678999984  221   10               01111  11  34578999999


Q ss_pred             CCCCCeEEEEEEEeCCC------------ceEEEEEEEEecc---ccceeeeccceeEeeCccEEEEEEEcC--C-CCeE
Q psy2775         296 STKDKGRYSVKVTNKEG------------TVESAANLNVDQG---KAEFIKKLDDLEVKERENAVLEVEVTS--D-KADV  357 (785)
Q Consensus       296 ~~~d~G~Y~C~~~n~~g------------~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~--~-~~~v  357 (785)
                      +.+|+|.|+|.+.|..|            .....+.|.|...   +|.+........+.+|+.++|.|.+.+  | ++.+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  166 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  166 (457)
T ss_dssp             CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEE
T ss_pred             CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEE
Confidence            99999999999999865            1223456777642   233322233334678999999999987  3 3789


Q ss_pred             EEEECCEEcCCCCcEEEE-EcCc---EEEEEEcCCCCCCceEEEEEEeccceEEEEE--EEe------------------
Q psy2775         358 KWFKDGQEIKTSKKVTIE-KKGT---IRKLLIRNISVHDEGEYTCSLPDQETSAELN--VVE------------------  413 (785)
Q Consensus       358 ~W~~~~~~l~~~~~~~~~-~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~--v~~------------------  413 (785)
                      +|++++..+......... .++.   .+.|.|.++..+| |.|+|.|.|..+...+.  +..                  
T Consensus       167 ~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  245 (457)
T 1hzh_H          167 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELL  245 (457)
T ss_dssp             EETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCS
T ss_pred             EEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCcccc
Confidence            999998654311111111 1121   2359999999989 99999999976543322  210                  


Q ss_pred             cCCcc-cccCCCeE-EecCCcEEEEEEEeCC-Cc----eEEEEECCEEcccCCCEEEE-E-eCc---EEEEEEccCCCCC
Q psy2775         414 LPPEI-SVPLQDVK-VSRDEKASFEIELTKG-DA----LVKWYKDGKEIAFSENVTLS-I-DGK---KQKLIIFSAGLED  481 (785)
Q Consensus       414 ~~~~~-~~~~~~~~-v~~g~~~~l~C~~~~~-~~----~i~W~~~~~~~~~~~~~~~~-~-~~~---~~~L~i~~~~~~d  481 (785)
                      .+|.+ ..++.... +.+|+.++|.|.+.+. ++    .|+|+|++..+......... . ++.   .+.|.|.....+|
T Consensus       246 ~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d  325 (457)
T 1hzh_H          246 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN  325 (457)
T ss_dssp             SSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHH
T ss_pred             CCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccC
Confidence            12332 22222222 5679999999999983 32    89999999887533211111 1 121   1122222323334


Q ss_pred             cEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCe
Q psy2775         482 AGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL  560 (785)
Q Consensus       482 ~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~  560 (785)
                      +|.|+|.|.|. +.......+.+...                                                ...+|.
T Consensus       326 ~G~Y~C~a~n~~~~~~~~~~v~~~~~------------------------------------------------~~~~P~  357 (457)
T 1hzh_H          326 GKEYKCKVSNKALPAPIEKTISKAKG------------------------------------------------QPREPQ  357 (457)
T ss_dssp             TCCEEEEEECTTSSSCEEEEECCCCC------------------------------------------------CCBCCE
T ss_pred             CCcEEEEEeCCCCCCcceEEEEcccC------------------------------------------------CCCCCe
Confidence            99999999986 33333333322000                                                000133


Q ss_pred             Eeeeee-eeeeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCCCCeeEEe-eCCe----EEEEEccCCCCCCceeEEE
Q psy2775         561 FIERFE-EKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIF-DGEN----IILELKEADSETDAGDYKV  632 (785)
Q Consensus       561 ~~~~~~-~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~~~~~~~-~~~~----~~L~i~~~~~~~d~G~Y~C  632 (785)
                      +..... ...+..|+ ++|.|.+.|+|+|  .|+|+|||.++.......... .++.    ..|.|..... +|+|.|+|
T Consensus       358 v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~~~g~YtC  435 (457)
T 1hzh_H          358 VYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSC  435 (457)
T ss_dssp             EEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEE
T ss_pred             EEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHc-cCCCeEEE
Confidence            332221 22344455 9999999997544  899999999985432221211 2221    3567776665 78999999


Q ss_pred             EEEcCCcc
Q psy2775         633 VATNELGS  640 (785)
Q Consensus       633 ~a~n~~g~  640 (785)
                      .|.|....
T Consensus       436 ~a~n~~l~  443 (457)
T 1hzh_H          436 SVMHEALH  443 (457)
T ss_dssp             EEECTTSG
T ss_pred             EEEECCCC
Confidence            99998654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=2.1e-32  Score=284.56  Aligned_cols=282  Identities=18%  Similarity=0.349  Sum_probs=143.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .|+.+...+..+.+.+|++++|.|.+.+. |.+.+.|++++..+....++.+.        ..+|+|.+++.+|+|.|+|
T Consensus         7 ~p~p~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C   78 (334)
T 1ry7_B            7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG--------PQRLQVLNASHEDSGAYSC   78 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec--------cceEEEeecccccCEEEEE
Confidence            34444445899999999999999999876 56899999999988766555432        1459999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCC------------------CCCceecCC----CceEeccCCcEEEEEEEeccCCCeEEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKP------------------EKPSILEPL----HDVSITEGESAVLSVQVGGEPSPKVEW  147 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~------------------~~p~i~~~~----~~~~~~~G~~v~l~C~~~g~p~~~v~W  147 (785)
                      .|.|. +.....+.|.|.....                  .+|.+..+.    ....+.+|+.+.|.|.+.|.|.+.+.|
T Consensus        79 ~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W  157 (334)
T 1ry7_B           79 RQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISW  157 (334)
T ss_dssp             -----------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEEC
T ss_pred             EEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEE
Confidence            99998 7666666777653211                  134444332    246788999999999999999999999


Q ss_pred             eECCEEcccce----EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCcccccc
Q psy2775         148 YKDGKLIKDRQ----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL  223 (785)
Q Consensus       148 ~~~g~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  223 (785)
                      +++|..+....    ........+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...++                  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~------------------  219 (334)
T 1ry7_B          158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP------------------  219 (334)
T ss_dssp             CBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC------------------
T ss_pred             EECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC------------------
Confidence            99998876542    12233455899999999999999999999999988888888875431                  


Q ss_pred             ceeeecCCCCCCCeeee-cCCcceeCCCCeEEEEEEEccCCCCeEEEEE----CCEEcccc-----eEEE-------eCC
Q psy2775         224 DTLQVNTGKPEKPSILE-PLHDVSITEGESAVLSVQVGGEPSPKVEWYK----DGKLIKDR-----QITS-------EKN  286 (785)
Q Consensus       224 ~~~~~~~~~~~~p~~~~-~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~----~~~~l~~~-----~~~~-------~~~  286 (785)
                                .+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++    +|..+...     .+..       ...
T Consensus       220 ----------~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  289 (334)
T 1ry7_B          220 ----------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKE  289 (334)
T ss_dssp             ----------SSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTT
T ss_pred             ----------CCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccc
Confidence                      1233322 2345678899999999999999999999999    66655411     0111       111


Q ss_pred             EEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEEeccccce
Q psy2775         287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEF  329 (785)
Q Consensus       287 ~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~  329 (785)
                      ...|.|.++..+|+|.|+|.|.|..|....++.|.|...++.+
T Consensus       290 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL  332 (334)
T ss_dssp             CCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC-
T ss_pred             ccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCCc
Confidence            2479999999999999999999999999999999998765543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=1.8e-30  Score=264.03  Aligned_cols=262  Identities=17%  Similarity=0.166  Sum_probs=198.2

Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcCCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEecc-c
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ-E  404 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~-~  404 (785)
                      +|.+...+....+.+|+.++|.|.+.+   .++|++++..+     ......+  ..|.|.++..+|+|.|+|.+.|. .
T Consensus        12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~---~i~W~~~~~~~-----~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~ng~~   81 (290)
T 2o26_X           12 PPSIHPAQSELIVEAGDTLSLTCIDPD---FVRWTFKTYFN-----EMVENKK--NEWIQEKAEATRTGTYTCSNSNGLT   81 (290)
T ss_dssp             CCEESSCSSEEEEETTSCEEEEEECTT---EEEEEEECSSS-----CEEEECS--SEEEETTCCGGGCEEEEEEESSSCE
T ss_pred             CCEEeCCCCeEEEcCCCcEEEEECCCC---cEEEecCCcce-----eeecCCC--ceEEEeccCHHhCeEEEEEeeCCcc
Confidence            455555667788999999999999987   99999998876     1122233  45999999999999999999983 2


Q ss_pred             eEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeCCC-ceEEE-EECCEEcccCCCEEEEEeCcEEEEEEccCCCCCc
Q psy2775         405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD-ALVKW-YKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDA  482 (785)
Q Consensus       405 ~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~i~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  482 (785)
                      ....+.|.. ++.+...+....+.+|+.+.|.|.+.++. +.+.| +++|..+....++....++   .|.|.++..+|+
T Consensus        82 ~~~~l~V~~-~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~v~~~d~  157 (290)
T 2o26_X           82 SSIYVFVRD-PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYH  157 (290)
T ss_dssp             EEEEEEEEC-SSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTT---EEEEESCCGGGT
T ss_pred             EEEEEEEeC-CCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCC---CEEEecccHHHC
Confidence            233444444 44444666778888999999999999887 88999 5688887665555444333   699999999999


Q ss_pred             E-EEEEEEeecCcce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCC
Q psy2775         483 G-EYSCRVGDTGDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP  559 (785)
Q Consensus       483 G-~Y~C~a~n~g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p  559 (785)
                      | .|+|.|.|.+...  ..+.|.|....                                                ..+|
T Consensus       158 G~~Y~C~a~n~~~~~~s~~~~l~V~~~~------------------------------------------------~~~P  189 (290)
T 2o26_X          158 RLCVRCAAQRDGTWLHSDKFTLKVREAI------------------------------------------------KAIP  189 (290)
T ss_dssp             TCEEEEEEEETTEEEECCCEEEEEECCC------------------------------------------------CSCC
T ss_pred             CCEEEEEEEECCceEEeEEEEEEEEeCC------------------------------------------------CCCC
Confidence            9 9999999974332  34777776321                                                0126


Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCCc-eEEEeCCEEe----cCCCCeeEE---eeCCeEEEEEccCCCCCCceeEE
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPL----LSSPKKREI---FDGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~i----~~~~~~~~~---~~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      .|...+....+.+|+.++|.|.+.|.|.|. |+|+|++..+    .........   ......+|.|.++.. +|+|.|+
T Consensus       190 ~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~  268 (290)
T 2o26_X          190 VVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARV-DDSGVFM  268 (290)
T ss_dssp             EEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCS-SSCEEEE
T ss_pred             ccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCc-ccCeEEE
Confidence            665555567899999999999999999996 9999999873    222222222   223456899999999 9999999


Q ss_pred             EEEEcCCcceEEEEEEEEE
Q psy2775         632 VVATNELGSATHGARVTVD  650 (785)
Q Consensus       632 C~a~n~~g~~~~~~~l~V~  650 (785)
                      |.|.|..|....++.|.|.
T Consensus       269 C~a~N~~g~~~~~~~l~V~  287 (290)
T 2o26_X          269 CYANNTFGSANVTTTLKVV  287 (290)
T ss_dssp             EEEECSSCEEEEEEEECC-
T ss_pred             EEEeCCCCcEEEEEEEEEE
Confidence            9999999999888887775

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=4.2e-30  Score=264.50  Aligned_cols=285  Identities=18%  Similarity=0.265  Sum_probs=203.9

Q ss_pred             CCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          19 TKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      +..+.|.+|+++.|.|... +.|.+.|.|++++..+....++.+...++.    .+|+|.+++.+|+|.|+|.|.|..|.
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~~~n~~g~   83 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNK----TKMTFKDLGMDDLGIYSCDVTDTDGI   83 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTE----EEEEESSCCGGGCEEEEEEESSSCCC
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCE----EEEEECcCCccCCEEEEEEEEeCCCc
Confidence            4468899999999999884 568899999999999988888877765432    46999999999999999999998774


Q ss_pred             EEEEeeEEEeCCC--------CCCCceecCC-CceEeccCCcEEEEEEEe-ccCCCeEEEeECCEEcccce---EEEe--
Q psy2775          98 AKMDIPVKVNTGK--------PEKPSILEPL-HDVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLIKDRQ---ITSE--  162 (785)
Q Consensus        98 ~~~~~~v~v~~~~--------~~~p~i~~~~-~~~~~~~G~~v~l~C~~~-g~p~~~v~W~~~g~~~~~~~---~~~~--  162 (785)
                      .. ...+.|....        ..+|.+.... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+....   +...  
T Consensus        84 ~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~  162 (312)
T 2y23_A           84 AS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN  162 (312)
T ss_dssp             CE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT
T ss_pred             EE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC
Confidence            43 3444442100        0044443333 277889999999999998 88999999999999987542   2222  


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeee-cCCCCCCCeeeec
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV-NTGKPEKPSILEP  241 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~  241 (785)
                      .+..+|.|.+++.+|+|.|+|.|.+..+.......+......              .......++. ......+|.+...
T Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~p~~~~~  228 (312)
T 2y23_A          163 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK--------------KLQKEAEFQRQEWIRKQGPHFVEY  228 (312)
T ss_dssp             TTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHH--------------HHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred             CCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhh--------------hhcccccccccchhhccCCceeec
Confidence            456679999999999999999998765444333322100000              0000000000 0000023555544


Q ss_pred             CCcceeCCCCeEEEEEEEccCCCC-eEEEEECCEEcc-cceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEE
Q psy2775         242 LHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN  319 (785)
Q Consensus       242 ~~~~~~~~G~~~~l~C~~~g~p~~-~v~W~~~~~~l~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~  319 (785)
                      +. ..+.+|+.+.|.|.+.+.|.+ .+.|+++|..+. ........+...|.|.++..+|+|.|+|.|.|..|....++.
T Consensus       229 ~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~  307 (312)
T 2y23_A          229 LS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK  307 (312)
T ss_dssp             EE-EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEE
T ss_pred             ce-EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeE
Confidence            43 678899999999999999988 999999999887 222333355679999999999999999999999999998888


Q ss_pred             EEEe
Q psy2775         320 LNVD  323 (785)
Q Consensus       320 l~v~  323 (785)
                      |.+.
T Consensus       308 l~i~  311 (312)
T 2y23_A          308 LVDE  311 (312)
T ss_dssp             ECSC
T ss_pred             EEec
Confidence            8753

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=1e-29  Score=258.35  Aligned_cols=272  Identities=18%  Similarity=0.218  Sum_probs=203.5

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...+..+.+.+|++++|.|.+.+    .+.|++++...     ........    .++|+|.+++.+|+|.|+|
T Consensus         2 ~p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~-----~~~~~~~~----~~~L~i~~~~~~d~G~Y~C   68 (289)
T 3ejj_X            2 DPAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPY-----WTLDPESP----GSTLTTRNATFKNTGTYRC   68 (289)
T ss_dssp             --CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSS-----SEECCCSS----CCEEEESSCCGGGCEEEEE
T ss_pred             CCCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCce-----EEEeccCC----ccEEEEeeeccccCEEEEE
Confidence            46788888899999999999999999876    49999766321     11111111    1459999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCe-EEEeE-CCEEcccceEEEeCCEEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK-VEWYK-DGKLIKDRQITSEKNTHT  167 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~-v~W~~-~g~~~~~~~~~~~~~~~~  167 (785)
                      .|.+..+.....+.|.|..  +..+ +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+.............
T Consensus        69 ~~~~~~~~~~~~~~l~V~~--~~~~-~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~  145 (289)
T 3ejj_X           69 TELEDPMAGSTTIHLYVKD--PAHS-WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG  145 (289)
T ss_dssp             ECCC-----CEEEEEEECC--SSCS-EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTE
T ss_pred             EEeccCCcceeEEEEEEeC--CCcc-eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCC
Confidence            9999888777777888863  1122 45555788899999999999998876664 99986 777765443222222346


Q ss_pred             EEEcccCCCCcEEEEEEEE-cCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcce
Q psy2775         168 LTLIQCSTKDKGRYSVKVT-NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS  246 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  246 (785)
                      |.|.++..+|+|.|+|.|. +..+..+..+.|.|....                            +.+|.+...+....
T Consensus       146 L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~----------------------------~~~p~i~~~~~~~~  197 (289)
T 3ejj_X          146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH----------------------------PEPPQIKLEPSKLV  197 (289)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSC----------------------------CCCCEEEEESSSEE
T ss_pred             EEEeecccccCEEEEEEEEeCCCccccccEEEEEEECC----------------------------CCCCeEEecCCceE
Confidence            9999999999999999999 555555666788886422                            14577777777777


Q ss_pred             eCCCCeEEEEEEEcc-CCCCeEEEEECCEEcccceEEE-----eCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEE
Q psy2775         247 ITEGESAVLSVQVGG-EPSPKVEWYKDGKLIKDRQITS-----EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL  320 (785)
Q Consensus       247 ~~~G~~~~l~C~~~g-~p~~~v~W~~~~~~l~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l  320 (785)
                      +.+|+.+.|.|.+.+ .|.+.+.|++++..+.......     ......|.|.++..+|+|.|+|.|.|..|...+++.|
T Consensus       198 ~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L  277 (289)
T 3ejj_X          198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF  277 (289)
T ss_dssp             CCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEE
Confidence            889999999999988 7899999999999886322211     1125689999999999999999999999999999998


Q ss_pred             EEecc
Q psy2775         321 NVDQG  325 (785)
Q Consensus       321 ~v~~~  325 (785)
                      .+...
T Consensus       278 ~~~~~  282 (289)
T 3ejj_X          278 QVVES  282 (289)
T ss_dssp             ECC--
T ss_pred             EEEec
Confidence            88753

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=253.10  Aligned_cols=242  Identities=18%  Similarity=0.292  Sum_probs=195.0

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .|.|...|..+.+.+|++++|.|.+.+.|.+ .+.|++++..+....              ..|.|.+++.+|+|.|+|.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~--------------~~l~i~~~~~~d~G~Y~C~   66 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST--------------PSYRITSASVNDSGEYRCQ   66 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS--------------SEEEESSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC--------------CeEEEecCCcccCeEEEEE
Confidence            4889999999999999999999999888877 999999998876532              2499999999999999999


Q ss_pred             EEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccceEEEeCCEEEEE
Q psy2775          91 AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT  169 (785)
Q Consensus        91 a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~  169 (785)
                      +.|..+..  .+.|.|.    .++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...     .....|.
T Consensus        67 ~~~~~~s~--~~~l~v~----~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----~~~~~l~  134 (262)
T 3rjd_A           67 RGLSGRSD--PIQLEIH----RGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNSNLT  134 (262)
T ss_dssp             ESSSCCCC--CEEEEEE----CSS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EECCCEE
T ss_pred             EecCCccc--cEEEEEe----ccc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----CCCCeEE
Confidence            99876543  4455665    233 3333445678899999999999 67788899999999887532     1234799


Q ss_pred             EcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCC
Q psy2775         170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITE  249 (785)
Q Consensus       170 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  249 (785)
                      |.+++.+|+|.|+|.|.|..+..+..+.|.|....                             .+|.+...+ ...+.+
T Consensus       135 i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~-----------------------------~~p~~~~~~-~~~~~~  184 (262)
T 3rjd_A          135 ILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF-----------------------------PAPVLNASV-TSPLLE  184 (262)
T ss_dssp             ESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS-----------------------------CCCEEEESS-CSSEET
T ss_pred             EEECChhhCEEEEEEEeCCCCccccceEEEeccCC-----------------------------CCCeEeecC-ceeecC
Confidence            99999999999999999999888888888887542                             234555444 556789


Q ss_pred             CCeEEEEEEEccCCC-C----eEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce
Q psy2775         250 GESAVLSVQVGGEPS-P----KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV  314 (785)
Q Consensus       250 G~~~~l~C~~~g~p~-~----~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~  314 (785)
                      |+.+.|.|.+.+.|. +    .+.|++++..+..     ......|.|.++..+|+|.|+|.|.|..|..
T Consensus       185 g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          185 GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG-----RNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             TCCEEEEEECCCCCC-----EEEEEEETTEEEEE-----EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             CCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc-----cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            999999999999875 4    3789999987752     2344589999999999999999999999875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.97  E-value=5.5e-33  Score=299.76  Aligned_cols=361  Identities=12%  Similarity=0.188  Sum_probs=220.0

Q ss_pred             ccceeEeeCccEEEEEEEcCC---CCeEEEEECC--EEc----C-------------CCCcEEEEEc--CcEEEEEEcCC
Q psy2775         333 LDDLEVKERENAVLEVEVTSD---KADVKWFKDG--QEI----K-------------TSKKVTIEKK--GTIRKLLIRNI  388 (785)
Q Consensus       333 ~~~~~~~~g~~~~l~C~~~~~---~~~v~W~~~~--~~l----~-------------~~~~~~~~~~--~~~~~l~i~~~  388 (785)
                      +....+.+|+.++|.|.+.+.   .+.+.|++++  ..+    .             ...++.+..+  +....|.|.++
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            345678899999999999874   5789999853  211    0             0225544432  22345999999


Q ss_pred             CCCCceEEEEEEeccc----eEEEEEEEe---cCCcccccCCCeEEecCCcEEEEEEEeC--CCc-eEEEEECCEEcccC
Q psy2775         389 SVHDEGEYTCSLPDQE----TSAELNVVE---LPPEISVPLQDVKVSRDEKASFEIELTK--GDA-LVKWYKDGKEIAFS  458 (785)
Q Consensus       389 ~~~d~G~Y~C~a~n~~----~~~~~~v~~---~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~-~i~W~~~~~~~~~~  458 (785)
                      ..+|+|.|+|.+.|..    ....+.|..   .+|.+........+.+|+.++|.|.+.+  |.+ .|.|++++..+...
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~  165 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  165 (434)
T ss_dssp             CGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE
T ss_pred             ChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE
Confidence            9999999999998742    234555543   2344332222223578999999999987  444 89999998753110


Q ss_pred             CCEEEEEeC---cEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecC
Q psy2775         459 ENVTLSIDG---KKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS  534 (785)
Q Consensus       459 ~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (785)
                      ........+   ..+.|+|..+..+| |.|+|.|.|. |.......+.+..+.....                       
T Consensus       166 ~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~-----------------------  221 (434)
T 1igy_B          166 TFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPC-----------------------  221 (434)
T ss_dssp             ECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCC-----------------------
T ss_pred             ecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccc-----------------------
Confidence            000000011   12469999999889 9999999997 5544444443321100000                       


Q ss_pred             CceeeEEeecccccccCCCCCCCCCeEeeeeeeee-eeecCeEEEEEEEecCC----CCceEEEeCCEEecCCCCeeEE-
Q psy2775         535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT-VKEKGTIRLMAKVKASP----APSIVWFRNNKPLLSSPKKREI-  608 (785)
Q Consensus       535 ~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~-v~~g~~v~l~C~~~g~P----~p~v~W~~~~~~i~~~~~~~~~-  608 (785)
                                    .|..  ...+..++.++.... +.+|++++|.|.+.|.|    .+.|+|+|++..+......... 
T Consensus       222 --------------~~~~--~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~  285 (434)
T 1igy_B          222 --------------ICTV--PEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREE  285 (434)
T ss_dssp             --------------CCCC--SSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCC
T ss_pred             --------------cCCC--CcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCccee
Confidence                          0000  000122232222222 88999999999999984    3589999999877543221111 


Q ss_pred             eeC----CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeee
Q psy2775         609 FDG----ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEV  684 (785)
Q Consensus       609 ~~~----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (785)
                      ..+    ..++|.|.++.. +|+|.|+|.|.|..|....+..+.+.                                  
T Consensus       286 ~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~~~v~~~----------------------------------  330 (434)
T 1igy_B          286 QFNSTFRVVSALPIMHQDW-LNGKEFKCRVNSAAFPAPIEKTISKT----------------------------------  330 (434)
T ss_dssp             CCSSSCCCCCCEECCHHHH-HHTCCCBCCBCCSSCSSCCCCCCCCC----------------------------------
T ss_pred             CCCCcEEEEEEEEECHHHc-cCCCcEEEEEECCCCCCceeEEEecc----------------------------------
Confidence            111    234699999998 99999999999999865332222211                                  


Q ss_pred             eecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecC-CCC-ceEEeECCEEeeecccccc--ch--h--hhccccccee
Q psy2775         685 DVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKAL-PPP-KAEWTVNGTVIVPSKRVKG--KA--E--FIKKLDDLEV  756 (785)
Q Consensus       685 ~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~-P~p-~i~W~~~~~~~~~~~~~~~--~~--~--~~~~l~~~~v  756 (785)
                         ..+..+|.+........ ...|+.++|.|.+.|+ |++ .|+|+|||..+........  ..  .  ....|.+...
T Consensus       331 ---~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~  406 (434)
T 1igy_B          331 ---KGKPRAPQVYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKS  406 (434)
T ss_dssp             ---CSCCBCCCCEEECCCSS-SSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHH
T ss_pred             ---CCCCcCCEEEEECCCHH-HhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECch
Confidence               01224555543222211 3357789999999995 433 8999999998854322211  11  1  1123333333


Q ss_pred             eeeeceEEEEEEeccc
Q psy2775         757 KERENAVLEVEVTSDK  772 (785)
Q Consensus       757 ~~~~~~~~~c~~~~~~  772 (785)
                      ...|.|.|+|.|.++.
T Consensus       407 ~~~~~g~YtC~a~n~~  422 (434)
T 1igy_B          407 NWEAGNTFTCSVLHEG  422 (434)
T ss_dssp             HHHTTCCEEEEEEETT
T ss_pred             hccCCCEEEEEEEcCC
Confidence            3456899999999854

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=4e-31  Score=272.44  Aligned_cols=274  Identities=16%  Similarity=0.234  Sum_probs=204.0

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecC-CCeeEEEECCEEccC----CCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGEPLQE----TDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +..+......+.+.+|+++.|.|.+.+.| .+.|.|++++..+..    ..++...  +      ..|.|.+++.+|+|.
T Consensus         5 ~c~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~------~~L~i~~v~~~D~G~   76 (315)
T 1itb_B            5 KCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--K------EKLWFVPAKVEDSGH   76 (315)
T ss_dssp             -CCCBCCCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC--S------SBEECTTCCGGGCSC
T ss_pred             cchhhcCceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc--C------CeEEECCCChhhCEE
Confidence            34445555688999999999999998887 789999999864321    2233322  1      249999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCC---CceEeccCCcEEEEEEE------eccCCCeEEEeECCEEcccc
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL---HDVSITEGESAVLSVQV------GGEPSPKVEWYKDGKLIKDR  157 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~---~~~~~~~G~~v~l~C~~------~g~p~~~v~W~~~g~~~~~~  157 (785)
                      |+|.|.|..+.....+.+.+..   .+|.+...+   ....+..|+.+.|.|.+      .|.|.+.++|+++|..+...
T Consensus        77 Y~C~a~n~~g~~~~~~~v~v~~---~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~  153 (315)
T 1itb_B           77 YYCVVRNSSYCLRIKISAKFVE---NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD  153 (315)
T ss_dssp             CEECCCSSSCCCCEECCCEEEC---CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC
T ss_pred             EEEEEeCCceEEEEEEEEEEeC---CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc
Confidence            9999999988777766666654   344443222   23568889999999998      78899999999999998643


Q ss_pred             eEEEeCCEEEEEEcccCCCCcEEEEEEEE-cCCeeEE---EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCC
Q psy2775         158 QITSEKNTHTLTLIQCSTKDKGRYSVKVT-NKEGTVE---SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP  233 (785)
Q Consensus       158 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~-n~~g~~~---~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (785)
                      ..........|.|.+++.+|+|.|+|.|. |..|...   ..+.+.+....                           .+
T Consensus       154 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~---------------------------~~  206 (315)
T 1itb_B          154 NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN---------------------------KP  206 (315)
T ss_dssp             SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC---------------------------CC
T ss_pred             cceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC---------------------------CC
Confidence            22122223379999999999999999999 7777653   23333333211                           11


Q ss_pred             CCCeeeecCCc-ceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccce-------EEEe--------CCEEEEEEccCCC
Q psy2775         234 EKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-------ITSE--------KNTHTLTLIQCST  297 (785)
Q Consensus       234 ~~p~~~~~~~~-~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~-------~~~~--------~~~~~l~i~~~~~  297 (785)
                      .+|.+...+.. ..+.+|+.+.|.|.+.|.|.+.+.|+++|..+....       ....        .....|.|.++..
T Consensus       207 ~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  286 (315)
T 1itb_B          207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES  286 (315)
T ss_dssp             CCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred             CCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCH
Confidence            45666665543 478899999999999999999999999999887321       1111        1245899999999


Q ss_pred             CC-CeEEEEEEEeCCCceEEEEEEEEe
Q psy2775         298 KD-KGRYSVKVTNKEGTVESAANLNVD  323 (785)
Q Consensus       298 ~d-~G~Y~C~~~n~~g~~~~~~~l~v~  323 (785)
                      +| +|.|+|.|.|..|....++.|.|.
T Consensus       287 ~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          287 RFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             GGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             HHcCCceEEEEecCCCceeEEEEEEec
Confidence            99 999999999999999988888775

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=1.8e-30  Score=271.79  Aligned_cols=280  Identities=18%  Similarity=0.275  Sum_probs=174.5

Q ss_pred             Ceeee-cCCceEecCCCeEEEEEEEEecCC-----------CeeEEEECCEE------cc---CCCCEEEeecCCccceE
Q psy2775          13 PTFSK-KTKPVYAEENSEVTLEVRLVAVPE-----------PDLLWYYNGEP------LQ---ETDEVVFSDQSDMHSYV   71 (785)
Q Consensus        13 p~~~~-~~~~~~v~~G~~v~l~C~~~g~p~-----------~~i~W~~~~~~------~~---~~~~~~~~~~~~~~~~~   71 (785)
                      +.+.. .+..+.+.+|+++.|.|.+.+.|.           +.|.|++++..      +.   ...++.  ..+      
T Consensus         7 ~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~--~~~------   78 (349)
T 4dep_C            7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS--KEK------   78 (349)
T ss_dssp             EEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE--EET------
T ss_pred             cccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEe--ecC------
Confidence            34444 367899999999999999987654           89999998831      21   111221  111      


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-----eccCCCeEE
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-----GGEPSPKVE  146 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-----~g~p~~~v~  146 (785)
                      .+|.|.+++.+|+|.|+|.|.|..+.....+.|.|.......+.....+....+.+|+.+.|.|.+     .|.|.+.+.
T Consensus        79 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~  158 (349)
T 4dep_C           79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTIT  158 (349)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEE
T ss_pred             CEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEE
Confidence            259999999999999999999999888888888887522212222222345678899999999985     678899999


Q ss_pred             EeECCEEcccc-eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCC-eeE---EEEEEEEeecCCCCCCCCCCCCCCCcccc
Q psy2775         147 WYKDGKLIKDR-QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE-GTV---ESAANLNVDPYEPKESKETPPSPPPYVVS  221 (785)
Q Consensus       147 W~~~g~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  221 (785)
                      |++||..+... .+...+  ..|.|.+++.+|+|.|+|.|.|.. |..   +..+.|.|...+.                
T Consensus       159 W~k~~~~l~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~----------------  220 (349)
T 4dep_C          159 WYMGCYKIQNFNNVIPEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK----------------  220 (349)
T ss_dssp             EEETTEECCSCSSEEEET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGG----------------
T ss_pred             EeeCCEECCCccceeecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCC----------------
Confidence            99999998653 222222  479999999999999999999986 443   4556666653210                


Q ss_pred             ccceeeecCCCCCCCeeeecCCcc--eeCCCCeEEEEEEEc----cCCCCeEEEEECCEEccc--ceEEE---------e
Q psy2775         222 ELDTLQVNTGKPEKPSILEPLHDV--SITEGESAVLSVQVG----GEPSPKVEWYKDGKLIKD--RQITS---------E  284 (785)
Q Consensus       222 ~~~~~~~~~~~~~~p~~~~~~~~~--~~~~G~~~~l~C~~~----g~p~~~v~W~~~~~~l~~--~~~~~---------~  284 (785)
                                ...+|.+..+....  .+.+|+.+.|.|.+.    +.|.+.+.|+++|..+..  .....         .
T Consensus       221 ----------~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~  290 (349)
T 4dep_C          221 ----------NAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE  290 (349)
T ss_dssp             ----------GCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTC
T ss_pred             ----------CCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCC
Confidence                      00246666555432  678999999999998    578899999999987763  11110         1


Q ss_pred             --CCEEEEEEccCCCCCC-eEEEEEEEeCCCceEEEEEEEEeccccc
Q psy2775         285 --KNTHTLTLIQCSTKDK-GRYSVKVTNKEGTVESAANLNVDQGKAE  328 (785)
Q Consensus       285 --~~~~~l~i~~~~~~d~-G~Y~C~~~n~~g~~~~~~~l~v~~~~~~  328 (785)
                        ....+|.|.++..+|. |.|+|.|.|..|.....+.|.|...+|.
T Consensus       291 ~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~~p~  337 (349)
T 4dep_C          291 DETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPR  337 (349)
T ss_dssp             CEEEEECC-------------CEEEEECSSCEEEEECC---------
T ss_pred             CcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecCCCC
Confidence              1134599999999999 9999999999999998888888754443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.97  E-value=2.7e-29  Score=260.82  Aligned_cols=278  Identities=16%  Similarity=0.224  Sum_probs=198.6

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEec----CCCeeEEEECC--EE-------------c--cCCCCEEEeecC
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAV----PEPDLLWYYNG--EP-------------L--QETDEVVFSDQS   65 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~----p~~~i~W~~~~--~~-------------~--~~~~~~~~~~~~   65 (785)
                      .+...|+.+...+..+.+.+|++++|.|.+.+.    +.+.+.|++++  ..             +  ....++.+....
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~   88 (331)
T 3u83_A            9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS   88 (331)
T ss_dssp             ------------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCS
T ss_pred             ccCCCCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccC
Confidence            344456666778889999999999999999775    44579999954  11             1  122444443111


Q ss_pred             CccceEEEEEEcccCCCCCeEEEEE-EEcCCeeEEEEeeEEEeCCCCCCCce--ecCCCceEeccC---CcEEEEEE-Ee
Q psy2775          66 DMHSYVSIVTIKSIKKREEGVYTVV-AKNREGEAKMDIPVKVNTGKPEKPSI--LEPLHDVSITEG---ESAVLSVQ-VG  138 (785)
Q Consensus        66 ~~~~~~~~L~i~~~~~~D~G~Y~C~-a~~~~~~~~~~~~v~v~~~~~~~p~i--~~~~~~~~~~~G---~~v~l~C~-~~  138 (785)
                      .   ...+|.|.+++.+|+|.|+|. +.+..+.....+.|.|..    +|.+  ........+.+|   +.+.|.|. +.
T Consensus        89 ~---~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~----~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~  161 (331)
T 3u83_A           89 F---TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA----KPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN  161 (331)
T ss_dssp             S---SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB----CCEEEEEECSSCEEECTTCCCCEEEEEEEEEE
T ss_pred             C---CCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEec----CCcceeecCCCceeecCCCccceEEEEEEecC
Confidence            1   124599999999999999998 556677777788888873    4544  334566778888   78999998 78


Q ss_pred             ccCCCeEEEeECCEEcccce-EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCC
Q psy2775         139 GEPSPKVEWYKDGKLIKDRQ-ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPP  213 (785)
Q Consensus       139 g~p~~~v~W~~~g~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~  213 (785)
                      +.|.+.++|++++....... .....+    ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|...          
T Consensus       162 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~----------  231 (331)
T 3u83_A          162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE----------  231 (331)
T ss_dssp             EBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEE----------
T ss_pred             CcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecC----------
Confidence            89999999999532221111 111111    246889999999999999999999998888888887632          


Q ss_pred             CCCCccccccceeeecCCCCCCCeee-ecCCcceeCCCCeEEEEEEEccCCCCe-EEEEECCEEcccceEEEeCCEEEEE
Q psy2775         214 SPPPYVVSELDTLQVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPK-VEWYKDGKLIKDRQITSEKNTHTLT  291 (785)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~G~~~~l~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~l~  291 (785)
                                            |.+. ..+....+.+|+.+.|.|.+.|+|.+. +.|++++..+...... ..  .+|.
T Consensus       232 ----------------------P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~-~~--~~L~  286 (331)
T 3u83_A          232 ----------------------PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA-QN--RTLF  286 (331)
T ss_dssp             ----------------------EEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEE-ET--TEEE
T ss_pred             ----------------------CeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccccee-cC--cEEE
Confidence                                  3333 334455688999999999999999997 9999999887644322 22  3799


Q ss_pred             Ec-cCCCCCCeEEEEEEEeCCCceEEEEEEEEeccc
Q psy2775         292 LI-QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGK  326 (785)
Q Consensus       292 i~-~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~  326 (785)
                      |. ++..+|+|.|+|.|.|..|....++.|.|...+
T Consensus       287 i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          287 FKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA  322 (331)
T ss_dssp             ECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred             EeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence            99 899999999999999999999888999887643

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=2.6e-30  Score=267.63  Aligned_cols=263  Identities=14%  Similarity=0.136  Sum_probs=194.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEec---------CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe-E
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAV---------PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG-V   86 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~---------p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~   86 (785)
                      .....+.+.+|+++.|.|.+.+.         |.+.|.|++++..+....+. ..  +      .+|.|.+++.+|+| .
T Consensus        34 ~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~--~------~~L~i~~v~~~D~Gs~  104 (329)
T 3oq3_B           34 GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VK--N------GDLWIANYTSNDSHRR  104 (329)
T ss_dssp             EEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EE--T------TEEEESSCCGGGGGCC
T ss_pred             CCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-ee--c------ceEEEcCCChHhCCCc
Confidence            33467889999999999999774         55799999999876543332 11  1      35999999999999 9


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccC-CCeEEEeECCEEcccc--eEEEeC
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYKDGKLIKDR--QITSEK  163 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-~~~v~W~~~g~~~~~~--~~~~~~  163 (785)
                      |+|.|.|..|.......+.+..   .+|.+........+.+|+.+.|.|.+.|.| .+.+.|+++|..+...  ..... 
T Consensus       105 Y~C~a~n~~g~~~~~~~~~v~~---~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-  180 (329)
T 3oq3_B          105 YLCTVTTKNGDCVQGIVRSHIR---KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-  180 (329)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEC---CCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-
T ss_pred             EEEEEEeCCCceeeEEEEEEEc---CCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-
Confidence            9999999887654444334432   344444443344467799999999999999 8999999999998532  22222 


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcC--CeeE----EEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCe
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNK--EGTV----ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS  237 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~--~g~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  237 (785)
                       ..+|.|.+++.+|+|.|+|.|.|.  .|..    +..+.|.|...+..                           ..|.
T Consensus       181 -~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~---------------------------~~~~  232 (329)
T 3oq3_B          181 -GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH---------------------------RFKL  232 (329)
T ss_dssp             -TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC---------------------------CEEE
T ss_pred             -CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC---------------------------CCce
Confidence             357999999999999999999986  4322    23366777633200                           0022


Q ss_pred             eeecCCcceeCCCCeEEEEEEEccCC---CC-eEEEEECCEEcc-cce--EE---EeC--CEEEEEEccCCCCCCe-EEE
Q psy2775         238 ILEPLHDVSITEGESAVLSVQVGGEP---SP-KVEWYKDGKLIK-DRQ--IT---SEK--NTHTLTLIQCSTKDKG-RYS  304 (785)
Q Consensus       238 ~~~~~~~~~~~~G~~~~l~C~~~g~p---~~-~v~W~~~~~~l~-~~~--~~---~~~--~~~~l~i~~~~~~d~G-~Y~  304 (785)
                      +  .+....+.+|+.+.|.|.+.|.|   .+ .+.|+++|..+. ...  ..   ...  ....|.|.++..+|.| .|+
T Consensus       233 ~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~  310 (329)
T 3oq3_B          233 I--LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYT  310 (329)
T ss_dssp             E--CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEE
T ss_pred             e--cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEE
Confidence            2  44557888999999999999988   77 899999988742 111  11   111  3568999999999999 999


Q ss_pred             EEEEeCCCceEEEEEEEE
Q psy2775         305 VKVTNKEGTVESAANLNV  322 (785)
Q Consensus       305 C~~~n~~g~~~~~~~l~v  322 (785)
                      |.|.|..|....++.|.|
T Consensus       311 C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          311 CRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEecCCceEEEEEEEe
Confidence            999999999888887766

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=7.4e-28  Score=263.97  Aligned_cols=381  Identities=14%  Similarity=0.161  Sum_probs=228.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC----CeeEEEECC--EE---cc-------------CCCCEEEeecCCccceEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYNG--EP---LQ-------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~~--~~---~~-------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ..|..+.+.+|++++|.|.+.+.+.    ..+.||++.  ..   +.             ...|+.+..+..  ....+|
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL   82 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTS--RNQFSL   82 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCC--CCEEEE
Confidence            4577899999999999999986543    679999863  21   10             013444333221  123579


Q ss_pred             EEcccCCCCCeEEEEEEEcCCe-----------e--EEEEeeEEEeCCCCCCCceec-CCCceEeccCCcEEEEEEEecc
Q psy2775          75 TIKSIKKREEGVYTVVAKNREG-----------E--AKMDIPVKVNTGKPEKPSILE-PLHDVSITEGESAVLSVQVGGE  140 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~-----------~--~~~~~~v~v~~~~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g~  140 (785)
                      +|.+++.+|+|.|.|.+.+..+           .  ......|.|....+.+|.+.. .+.......|+.+.|.|.+.|.
T Consensus        83 ~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~  162 (512)
T 1zvo_C           83 NLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGY  162 (512)
T ss_pred             EECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence            9999999999999999997642           1  112345666543344566542 2111102246899999999886


Q ss_pred             -CCC-eEEEeECCEEccc--c-eEEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE-----------EEEe
Q psy2775         141 -PSP-KVEWYKDGKLIKD--R-QITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-----------NLNV  200 (785)
Q Consensus       141 -p~~-~v~W~~~g~~~~~--~-~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~-----------~l~V  200 (785)
                       |.+ .|+|++++.....  . .....++    .+.|.|.....+ .|.|+|.|.|..+......           .+.+
T Consensus       163 ~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l  241 (512)
T 1zvo_C          163 HPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVP  241 (512)
T ss_pred             ecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEE
Confidence             655 8999997643210  0 1111111    246888887777 9999999999987655443           2222


Q ss_pred             ecCCCCCCCC-CCCCCCCcccccc--------------ce------eeecCCCCCCCee-eecCCcceeCCCCeEEEEEE
Q psy2775         201 DPYEPKESKE-TPPSPPPYVVSEL--------------DT------LQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQ  258 (785)
Q Consensus       201 ~~~~~~~~~~-~~~~~~~~~~~~~--------------~~------~~~~~~~~~~p~~-~~~~~~~~~~~G~~~~l~C~  258 (785)
                      ...+...+.. .....|... -.+              .+      +.-..+...+|.+ +.++....+.+|+.++|.|.
T Consensus       242 ~~pp~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~  320 (512)
T 1zvo_C          242 TAQPQAEGSLAKATTAPATT-RNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCF  320 (512)
T ss_pred             eCCCchhccccccccCchhh-ccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEE
Confidence            2111000000 000000000 000              00      0000112234554 34444456778999999999


Q ss_pred             EccCCC--CeEEEEECCEEcccc-e---EEE-eCC----EEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEEe-c--
Q psy2775         259 VGGEPS--PKVEWYKDGKLIKDR-Q---ITS-EKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD-Q--  324 (785)
Q Consensus       259 ~~g~p~--~~v~W~~~~~~l~~~-~---~~~-~~~----~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~-~--  324 (785)
                      +.|.++  ..|+|+++|..+... .   ... .++    .+.|.|.....+|+|.|+|.|.|..+... ...+... .  
T Consensus       321 v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~  399 (512)
T 1zvo_C          321 VVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ  399 (512)
T ss_pred             EeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC
Confidence            988643  389999999876511 1   111 111    24699999999999999999999876543 2222221 1  


Q ss_pred             --cccceeeeccceeEeeCccEE-EEEEEcC-CC--CeEEEEECCEEcCCCCcE----EEEEcCc----EEEEEEcCCCC
Q psy2775         325 --GKAEFIKKLDDLEVKERENAV-LEVEVTS-DK--ADVKWFKDGQEIKTSKKV----TIEKKGT----IRKLLIRNISV  390 (785)
Q Consensus       325 --~~~~~~~~~~~~~~~~g~~~~-l~C~~~~-~~--~~v~W~~~~~~l~~~~~~----~~~~~~~----~~~l~i~~~~~  390 (785)
                        .+|.+.......   .|+.+. |.|.+.+ ++  ..++|+++|..+......    ....++.    .+.|.|.....
T Consensus       400 ~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~  476 (512)
T 1zvo_C          400 APVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPS  476 (512)
T ss_pred             CCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhc
Confidence              123322222221   788899 9999997 33  368999999998754311    1222332    24577888778


Q ss_pred             CCceEEEEEEeccce
Q psy2775         391 HDEGEYTCSLPDQET  405 (785)
Q Consensus       391 ~d~G~Y~C~a~n~~~  405 (785)
                      +|.|.|+|.|.|...
T Consensus       477 ~~~g~YtC~v~h~~l  491 (512)
T 1zvo_C          477 PQPATYTCVVSHEDS  491 (512)
T ss_pred             CCCCeEEEEEEecCC
Confidence            889999999998654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=2.8e-29  Score=259.89  Aligned_cols=257  Identities=18%  Similarity=0.203  Sum_probs=189.7

Q ss_pred             cceeEeeCccEEEEEEEcC----------CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCce-EEEEEEec
Q psy2775         334 DDLEVKERENAVLEVEVTS----------DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEG-EYTCSLPD  402 (785)
Q Consensus       334 ~~~~~~~g~~~~l~C~~~~----------~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n  402 (785)
                      ....+.+|+.+.|.|.+.+          +.+.++|++++..+....+.  ...+   .|.|.++..+|+| .|+|.|.|
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~---~L~i~~v~~~D~Gs~Y~C~a~n  111 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNG---DLWIANYTSNDSHRRYLCTVTT  111 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETT---EEEESSCCGGGGGCCEEEEEEC
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecc---eEEEcCCChHhCCCcEEEEEEe
Confidence            4556889999999999876          45799999999876543332  2333   3999999999999 99999999


Q ss_pred             cceE----EEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-C-CceEEEEECCEEcccCC-CEEEEEeCcEEEEEEc
Q psy2775         403 QETS----AELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-G-DALVKWYKDGKEIAFSE-NVTLSIDGKKQKLIIF  475 (785)
Q Consensus       403 ~~~~----~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~-~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~L~i~  475 (785)
                      ..+.    ....++..||.+..+.....+.+|+.+.|.|.+.+ | .+.+.|+|++..+.... ++... +   ..|.|.
T Consensus       112 ~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~---~~L~I~  187 (329)
T 3oq3_B          112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-G---QNLIIH  187 (329)
T ss_dssp             TTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-T---TEEEEC
T ss_pred             CCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-C---CEEEEe
Confidence            7632    22244555655544433334567999999999988 5 68999999999985333 33322 2   479999


Q ss_pred             cCCCCCcEEEEEEEeec---CcceeE----EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775         476 SAGLEDAGEYSCRVGDT---GDKESK----ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP  548 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~---g~~~~~----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  548 (785)
                      +++.+|+|.|+|.|.|.   |.....    +.|.|..++...                                      
T Consensus       188 ~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~--------------------------------------  229 (329)
T 3oq3_B          188 NPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR--------------------------------------  229 (329)
T ss_dssp             SCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCC--------------------------------------
T ss_pred             ecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCC--------------------------------------
Confidence            99999999999999983   333333    667777653110                                      


Q ss_pred             ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCC---CC-ceEEEeCCEEec-CCCCeeEE--eeC--CeEEEEEc
Q psy2775         549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP---AP-SIVWFRNNKPLL-SSPKKREI--FDG--ENIILELK  619 (785)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P---~p-~v~W~~~~~~i~-~~~~~~~~--~~~--~~~~L~i~  619 (785)
                               .|.+  .+....+.+|++++|.|.+.|.|   .| .+.|+|+|..+. .+.+....  ..+  ...+|.|.
T Consensus       230 ---------~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~  298 (329)
T 3oq3_B          230 ---------FKLI--LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFE  298 (329)
T ss_dssp             ---------EEEE--CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEES
T ss_pred             ---------Ccee--cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEE
Confidence                     0112  33456889999999999999998   77 889999999853 33322211  122  45789999


Q ss_pred             cCCCCCCce-eEEEEEEcCCcceEEEEEEEE
Q psy2775         620 EADSETDAG-DYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       620 ~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ++.. +|+| .|+|.|.|..|....++.|.|
T Consensus       299 ~v~~-~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          299 NVTE-EYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             SCCG-GGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             eccH-HHCCCcEEEEEEecCCceEEEEEEEe
Confidence            9999 9999 999999999999999888877

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=7.9e-31  Score=273.26  Aligned_cols=279  Identities=19%  Similarity=0.246  Sum_probs=212.3

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEE-------ecCCCeeEEEECCEEc--cCCCCEEEeecCCccceEEEEEEc
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLV-------AVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~-------g~p~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      ......|.|...|..+.+.+|++++|.|.+.       +.|.+.|.|++++..+  .......+...+      .+|.|.
T Consensus        13 ~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~------~~L~i~   86 (339)
T 3o4o_C           13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQD------GALWLL   86 (339)
T ss_dssp             -----CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEET------TEEEES
T ss_pred             CcchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeC------CeEEEC
Confidence            3456779999999999999999999999997       8889999999999873  332122222222      249999


Q ss_pred             ccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCce--ecCCCceEeccCCcEEEEEE-----EeccCCCeEEEeEC
Q psy2775          78 SIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI--LEPLHDVSITEGESAVLSVQ-----VGGEPSPKVEWYKD  150 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i--~~~~~~~~~~~G~~v~l~C~-----~~g~p~~~v~W~~~  150 (785)
                      +++.+|+|.|+|.+.|..+.....+.|.|..    +|..  ........+.+|+.+.|.|.     +.|.|.+.+.|+++
T Consensus        87 ~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~----~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~  162 (339)
T 3o4o_C           87 PALQEDSGTYVCTTRNASYCDKMSIELRVFE----NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD  162 (339)
T ss_dssp             SBCTTCCEEEECCEEETTEEEEEEEEEEEEC----SCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEES
T ss_pred             CCCcccCEEEEEEEECCcceEEEEEEEEEEc----CCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecC
Confidence            9999999999999999999888888888874    2221  11122347889999999999     78889999999999


Q ss_pred             CEEcccc--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCe----eEEEEEEEEeecCCCCCCCCCCCCCCCccccccc
Q psy2775         151 GKLIKDR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG----TVESAANLNVDPYEPKESKETPPSPPPYVVSELD  224 (785)
Q Consensus       151 g~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~  224 (785)
                      |..+...  ......+...|.|.+++.+|+|.|+|.|.|..|    ..+..+.|.|....+                   
T Consensus       163 g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~-------------------  223 (339)
T 3o4o_C          163 SLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE-------------------  223 (339)
T ss_dssp             SCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC-------------------
T ss_pred             CeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC-------------------
Confidence            9988654  333334445899999999999999999999886    456677888864321                   


Q ss_pred             eeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEE---ccCC-CCeEEEEECCEEcccc----------eEEEe-CC---
Q psy2775         225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV---GGEP-SPKVEWYKDGKLIKDR----------QITSE-KN---  286 (785)
Q Consensus       225 ~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~---~g~p-~~~v~W~~~~~~l~~~----------~~~~~-~~---  286 (785)
                              ..+|.+...+....+.+|+.+.|.|.+   .|.| .+.+.|+++|..+...          ..... .+   
T Consensus       224 --------~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  295 (339)
T 3o4o_C          224 --------ETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENY  295 (339)
T ss_dssp             --------CCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCE
T ss_pred             --------CCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceE
Confidence                    134677777777788999999999999   8999 8899999998765311          11111 11   


Q ss_pred             -EEEEEEccCCCCCC-eEEEEEEEeCCCceEEEEEEEE
Q psy2775         287 -THTLTLIQCSTKDK-GRYSVKVTNKEGTVESAANLNV  322 (785)
Q Consensus       287 -~~~l~i~~~~~~d~-G~Y~C~~~n~~g~~~~~~~l~v  322 (785)
                       ...|.|.++..+|. |.|+|.|.|..|.....+.+.+
T Consensus       296 ~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          296 IEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             EEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             EEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence             22799999999997 9999999999998776655544

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=9.1e-29  Score=251.37  Aligned_cols=265  Identities=18%  Similarity=0.191  Sum_probs=197.5

Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcCCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccc-
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE-  404 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-  404 (785)
                      ++.+...+....+.+|+.++|.|.+.+   .++|++++....     .....+....|.|.++..+|+|.|+|.+.|.. 
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~---~v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   75 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG---SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELEDPM   75 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS---CCEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC---
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC---cEEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEeccCC
Confidence            344444556678899999999999877   599997764221     11122233459999999999999999998643 


Q ss_pred             ---eEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeCCC-ce-EEEEE-CCEEcccCCCEEEEEeCcEEEEEEccCC
Q psy2775         405 ---TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD-AL-VKWYK-DGKEIAFSENVTLSIDGKKQKLIIFSAG  478 (785)
Q Consensus       405 ---~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~  478 (785)
                         ....+.|...+..+...+....+.+|+.+.|.|.+.+++ +. +.|++ ++..+....++.+..++   .|.|.+++
T Consensus        76 ~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~  152 (289)
T 3ejj_X           76 AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR---GFIIRKAK  152 (289)
T ss_dssp             --CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT---EEEESSCC
T ss_pred             cceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC---CEEEeecc
Confidence               344555555444455566778899999999999999843 33 99986 67777666666655444   59999999


Q ss_pred             CCCcEEEEEEEeec--CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         479 LEDAGEYSCRVGDT--GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~--g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      .+|+|.|+|.|.|.  +.....+.|.|.....                                                
T Consensus       153 ~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~------------------------------------------------  184 (289)
T 3ejj_X          153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP------------------------------------------------  184 (289)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEESSCC------------------------------------------------
T ss_pred             cccCEEEEEEEEeCCCccccccEEEEEEECCC------------------------------------------------
Confidence            99999999999953  5556677888874310                                                


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEE--eeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREI--FDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~--~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      .+|.+...+....+.+|++++|.|.+.| .|.|.+.|++++..+.........  ......+|.|.++.. +|+|.|+|.
T Consensus       185 ~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~  263 (289)
T 3ejj_X          185 EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDF-QDAGIYSCV  263 (289)
T ss_dssp             CCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCS-SSCEEEEEE
T ss_pred             CCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecc-cCCEEEEEE
Confidence            1266666666777889999999999999 799999999999988654221110  112256899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTVD  650 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~  650 (785)
                      |.|..|...+++.|.+.
T Consensus       264 a~N~~G~~~~s~~L~~~  280 (289)
T 3ejj_X          264 ASNDVGTRTATMNFQVV  280 (289)
T ss_dssp             EECSSCEEEEEEEEECC
T ss_pred             EEcCCCCccccEEEEEE
Confidence            99999999999998876

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=4.3e-30  Score=263.68  Aligned_cols=267  Identities=15%  Similarity=0.163  Sum_probs=192.3

Q ss_pred             ceEecCCCeEEEEEEEEec-CCCeeEEEECCEEccC-----------------CCCEEEeecCCccceEEEEEEcccCCC
Q psy2775          21 PVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQE-----------------TDEVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      .+++.+|++++|.|.+.+. +.+.|.|+|++.....                 ..++.+.....   ..++|+|.+++.+
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~sL~I~~v~~~   84 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSL---NDATITLHNIGFS   84 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSS---SBCCEEECSCCGG
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCC---CceEEEEccCCHH
Confidence            6789999999999998654 4457999986532110                 11222211111   1245999999999


Q ss_pred             CCeEEEEEEEcC-CeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccceEE
Q psy2775          83 EEGVYTVVAKNR-EGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQIT  160 (785)
Q Consensus        83 D~G~Y~C~a~~~-~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~  160 (785)
                      |+|.|+|.|.+. .+.......+.+...  ..+.+...+.......|+.+.|.|.+ .|.|.+.|+|++++..+......
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~  162 (308)
T 4fom_A           85 DSGKYICKAVTFPLGNAQSSTTVTVLVE--PTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTS  162 (308)
T ss_dssp             GCEEEEEEEEETTTEEEEEEEEEEEEBC--CEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEE
T ss_pred             HCEEEEEEEeeCCCcceeeeeEEEeeec--cccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccce
Confidence            999999999875 556666666776531  12223344455666778999999986 67899999999999888655333


Q ss_pred             EeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE--EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCC
Q psy2775         161 SEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESA--ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPE  234 (785)
Q Consensus       161 ~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (785)
                      ....    .+.|.|.++..+|+|.|+|.|.|..+.....  +.|.|..                                
T Consensus       163 ~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~--------------------------------  210 (308)
T 4fom_A          163 FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY--------------------------------  210 (308)
T ss_dssp             CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE--------------------------------
T ss_pred             eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec--------------------------------
Confidence            2221    3479999999999999999999987654443  4444432                                


Q ss_pred             CCeeee-cCCcceeCCCCeEEEEEEEccCCCC-eEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy2775         235 KPSILE-PLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG  312 (785)
Q Consensus       235 ~p~~~~-~~~~~~~~~G~~~~l~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g  312 (785)
                      +|.+.. ......+..|+.++|.|.+.|+|.+ .+.|+|++..+.....  ..+...|.|.+++.+|+|.|+|.|.|..|
T Consensus       211 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G  288 (308)
T 4fom_A          211 APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL--ASDNTLHFVHPLTFNYSGVYICKVTNSLG  288 (308)
T ss_dssp             EEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB--CSTTEEECCSCCCSCCCSEEEEEEEETTE
T ss_pred             CCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE--EcCCeEEEECCCChhhCEEEEEEEEeCCC
Confidence            233322 2334566788999999999999988 6999999887764322  22345677899999999999999999999


Q ss_pred             ceEEEEEEEEeccc
Q psy2775         313 TVESAANLNVDQGK  326 (785)
Q Consensus       313 ~~~~~~~l~v~~~~  326 (785)
                      ....++.|.|.++|
T Consensus       289 ~~~~~~~l~V~~~P  302 (308)
T 4fom_A          289 QRSDQKVIYISDPP  302 (308)
T ss_dssp             EEEEEEECCEECCC
T ss_pred             cEEEEEEEEEEcCC
Confidence            99999999998754

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=253.78  Aligned_cols=270  Identities=15%  Similarity=0.258  Sum_probs=182.4

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEEcc---------CCCCEEEeecCC-ccceEEEEEEccc
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQ---------ETDEVVFSDQSD-MHSYVSIVTIKSI   79 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~L~i~~~   79 (785)
                      .+..|...|..+.+.+|++++|.|.+.+. |.+.|.|++++..+.         ...++....+.. ......+|+|.++
T Consensus         2 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v   81 (327)
T 2wng_A            2 EELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI   81 (327)
T ss_dssp             CCCCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred             ceeEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence            35678888999999999999999999887 888999999875321         111333221110 0012245999999


Q ss_pred             CCCCCeEEEEEEEcCCeeE-----EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCC--eEEEeECCE
Q psy2775          80 KKREEGVYTVVAKNREGEA-----KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP--KVEWYKDGK  152 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~~~-----~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~--~v~W~~~g~  152 (785)
                      +.+|+|.|+|.|.|..+..     ...+.|.|.. .+.+|.+..+  ...+.+|+.+.|.|.+.|.|++  .++|++||.
T Consensus        82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~-~p~~p~i~~~--~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~  158 (327)
T 2wng_A           82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRA-KPSAPVVSGP--AARATPQHTVSFTCESHGFSPRDITLKWFKNGN  158 (327)
T ss_dssp             CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEB-CCCCCEEECC--SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ccccCeEEEEEeecCCCcceeEeecCcEEEEEEe-cCCCceeecc--ccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence            9999999999999876531     1335666653 3344555432  3667899999999999987765  899999999


Q ss_pred             EcccceEEEe----CC----EEEEEEcccCCCCcEEEEEEEEcCCee---EEEEEEEEeecCCCCCCCCCCCCCCCcccc
Q psy2775         153 LIKDRQITSE----KN----THTLTLIQCSTKDKGRYSVKVTNKEGT---VESAANLNVDPYEPKESKETPPSPPPYVVS  221 (785)
Q Consensus       153 ~~~~~~~~~~----~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  221 (785)
                      .+........    .+    ...|.|.....+|.|.|+|.|.|..+.   ......+.+...                  
T Consensus       159 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~------------------  220 (327)
T 2wng_A          159 ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIR------------------  220 (327)
T ss_dssp             ECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBC------------------
T ss_pred             EccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccC------------------
Confidence            9875532111    11    235778877778889999999998765   233333322211                  


Q ss_pred             ccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccC-CCC-eEEEEECCEEcccc---eEE-EeCC----EEEEE
Q psy2775         222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGKLIKDR---QIT-SEKN----THTLT  291 (785)
Q Consensus       222 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~~-~v~W~~~~~~l~~~---~~~-~~~~----~~~l~  291 (785)
                                  .+|.+...+..  +.+|+.+.|.|.+.|. |++ .+.|+++|..+...   ... ..++    ...|.
T Consensus       221 ------------~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~  286 (327)
T 2wng_A          221 ------------VPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLL  286 (327)
T ss_dssp             ------------BCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEE
T ss_pred             ------------CCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEE
Confidence                        34555554333  7799999999999985 444 89999999987621   111 1222    14689


Q ss_pred             EccCCCCCCeEEEEEEEeCCCceE
Q psy2775         292 LIQCSTKDKGRYSVKVTNKEGTVE  315 (785)
Q Consensus       292 i~~~~~~d~G~Y~C~~~n~~g~~~  315 (785)
                      |..+..+|+|.|+|.|.|..+...
T Consensus       287 i~~~~~~d~G~Y~C~a~N~~~~~~  310 (327)
T 2wng_A          287 VNVSAHRDDVKLTCQVEHDGQPAV  310 (327)
T ss_dssp             C-------CCEEEEEEEETTCCCE
T ss_pred             EccccccCCCEEEEEEEeCCCCCc
Confidence            999999999999999999987654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.96  E-value=3.4e-27  Score=250.96  Aligned_cols=349  Identities=17%  Similarity=0.177  Sum_probs=236.5

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEccC-----CCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPLQE-----TDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      +|+|.. +.+..+.+|++++|.|.+.|.|.+.|.|+++  +..+..     ..++.+....    ..+.|+|.+++.+|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~   75 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH----GSSSLHIKDVKLSDS   75 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECS----SEEEEEEESCCGGGC
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccC----CcceEEEcccChhhC
Confidence            588887 6678888999999999999999999999999  887754     3455554432    235799999999999


Q ss_pred             eEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc-----eE
Q psy2775          85 GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QI  159 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-----~~  159 (785)
                      |.|+|.|.|..|.....+.|.|.    .+|.+........+.+|+.+.|.|.+.|.|.+.+.|+++|..+...     ..
T Consensus        76 G~Y~C~a~n~~g~~~~~~~l~V~----~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~  151 (389)
T 2jll_A           76 GRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKT  151 (389)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEE----EEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEE
T ss_pred             EEEEEEEEeCCCCcceEEEEEEE----eCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEE
Confidence            99999999999998888888887    5777777666667899999999999999999999999999998653     23


Q ss_pred             EEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeee
Q psy2775         160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL  239 (785)
Q Consensus       160 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  239 (785)
                      .......+|.|.++..+|+|.|+|.|.|..|.....+.+.+...+                             .+|..+
T Consensus       152 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P-----------------------------~~P~~~  202 (389)
T 2jll_A          152 YSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP-----------------------------SSPYGV  202 (389)
T ss_dssp             EECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCC-----------------------------CCCEEE
T ss_pred             eccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCC-----------------------------CCCcce
Confidence            334556789999999999999999999999998888877775432                             333222


Q ss_pred             ecCCcceeCCCCeEEEEEEEc----cCCCC--eEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCc
Q psy2775         240 EPLHDVSITEGESAVLSVQVG----GEPSP--KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT  313 (785)
Q Consensus       240 ~~~~~~~~~~G~~~~l~C~~~----g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~  313 (785)
                      ..    ....+..+.|.|...    +.|..  .+.|.+++.... ...........+.|.++...+.|.|+|.|.|..|.
T Consensus       203 ~~----~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~  277 (389)
T 2jll_A          203 KI----IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW-KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ  277 (389)
T ss_dssp             EE----EEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCC-EEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCB
T ss_pred             EE----eeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCccc-EEeeccCCcceEEECCccCCCEEEEEEEEEcCCcc
Confidence            11    112356788888742    22322  467888764221 12222334467999999999999999999999887


Q ss_pred             eEEEEEEEEeccccceeeeccc-eeEeeCccEEEEEEEcCC-C---C--eEEEEECCEEcCCCCcEEEEEcCcEEEEEEc
Q psy2775         314 VESAANLNVDQGKAEFIKKLDD-LEVKERENAVLEVEVTSD-K---A--DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR  386 (785)
Q Consensus       314 ~~~~~~l~v~~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~-~---~--~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~  386 (785)
                      ...+..+.+...+......+.. ........+.|....... .   .  .+.|...+..-   ........+....+.|.
T Consensus       278 ~~~s~~~~~~t~~~~~p~~p~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~~~~i~  354 (389)
T 2jll_A          278 GDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKED---QWLEKKVQGNKDHIILE  354 (389)
T ss_dssp             CCCCCCEEEECCCCCCCCCCCEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC--------CCBCCEECTTCCEEEEC
T ss_pred             CCCCcceEEEecCCCCCCCCccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCc---ceeEeeccCCcceEEeC
Confidence            6544333333211111111111 111234556666653221 1   1  22222211100   00011122233347888


Q ss_pred             CCCCCCceEEEEEEeccceE
Q psy2775         387 NISVHDEGEYTCSLPDQETS  406 (785)
Q Consensus       387 ~~~~~d~G~Y~C~a~n~~~~  406 (785)
                      ++.......|+..|.|..|.
T Consensus       355 ~L~~~t~Y~~~V~A~n~~G~  374 (389)
T 2jll_A          355 HLQWTMGYEVQITAANRLGY  374 (389)
T ss_dssp             SCCTTCEEEEEEEEEC-CCB
T ss_pred             CcCCCCEEEEEEEEEcCCcC
Confidence            88888788888888886553

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=245.50  Aligned_cols=247  Identities=19%  Similarity=0.261  Sum_probs=185.4

Q ss_pred             ceeeeccceeEeeCccEEEEEEEcC-CCC-eEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccce
Q psy2775         328 EFIKKLDDLEVKERENAVLEVEVTS-DKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQET  405 (785)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~  405 (785)
                      .+...+....+.+|+.+.|.|.+.+ +.+ .++|+++|..+....          ..|.|.++..+|+|.|+|.+.|..+
T Consensus         3 ~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~~~~~   72 (262)
T 3rjd_A            3 VITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRGLSGR   72 (262)
T ss_dssp             EEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             eEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEecCCc
Confidence            3445556678899999999999987 445 899999999886542          2399999999999999999998665


Q ss_pred             EEEEEEEecCCcccccCCCeEEecCCcEEEEEEEe-C-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcE
Q psy2775         406 SAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-K-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAG  483 (785)
Q Consensus       406 ~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~-~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  483 (785)
                      +..+.+....+.+...+....+.+|+.+.|.|.+. + +.+.+.|++++..+...      .  ....|.|.+++.+|+|
T Consensus        73 s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------~--~~~~l~i~~~~~~d~G  144 (262)
T 3rjd_A           73 SDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------H--WNSNLTILKTNISHNG  144 (262)
T ss_dssp             CCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------E--ECCCEEESSCCGGGCE
T ss_pred             cccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------C--CCCeEEEEECChhhCE
Confidence            54444332233333444566788999999999994 4 56689999999887422      1  1246999999999999


Q ss_pred             EEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEe
Q psy2775         484 EYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI  562 (785)
Q Consensus       484 ~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~  562 (785)
                      .|+|.|.|. +.....+.|.|..+..                                                 +|.+.
T Consensus       145 ~Y~C~~~n~~~~~~~~~~l~V~~~~~-------------------------------------------------~p~~~  175 (262)
T 3rjd_A          145 TYHCSGMGKHRYTSAGISVTVKELFP-------------------------------------------------APVLN  175 (262)
T ss_dssp             EEEEEEESSSEEEEECEEEEEECSSC-------------------------------------------------CCEEE
T ss_pred             EEEEEEeCCCCccccceEEEeccCCC-------------------------------------------------CCeEe
Confidence            999999997 6666677888876421                                                 13332


Q ss_pred             eeeeeeeeeecCeEEEEEEEecCCC-Cc----eEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKASPA-PS----IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~P~-p~----v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ... ...+.+|+.++|.|.+.|.|. |.    +.|++++..+...        .....|.|.++.. +|+|.|+|.|.|.
T Consensus       176 ~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~-~d~G~Y~C~a~n~  245 (262)
T 3rjd_A          176 ASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARR-EDSGLYWCEAATE  245 (262)
T ss_dssp             ESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--------ESCCEEEESSCCG-GGCEEEEEEEEET
T ss_pred             ecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--------CCCceEEEEEech-hhCeEEEEEEEcc
Confidence            222 456889999999999999986 53    7899999877422        3445799999999 9999999999999


Q ss_pred             Ccce-EEEEEEEEEe
Q psy2775         638 LGSA-THGARVTVDV  651 (785)
Q Consensus       638 ~g~~-~~~~~l~V~~  651 (785)
                      .|.. ..+..+.|.|
T Consensus       246 ~G~~~~~s~~~~l~V  260 (262)
T 3rjd_A          246 DGNVLKRSPELELQV  260 (262)
T ss_dssp             TSSCEEECCCEEECE
T ss_pred             cCceEEecCCeEEEE
Confidence            9975 4445555543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=2e-28  Score=248.83  Aligned_cols=266  Identities=14%  Similarity=0.138  Sum_probs=185.6

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |.|...+..+.+.+|++++|.|.+.|.    |.|++++..+.  .+.... ..  ..+.++|.|.+++.+|+|.|+|.|.
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~-~~--~~~~~~L~i~~~~~~D~G~Y~C~a~   71 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKA-QD--GTFSSVLTLTNLTGLDTGEYFCTHN   71 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEEC-TT--SCEEEEEEECSCCGGGCEEEEEECC
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceecc-CC--CceeEEEEEccCChhhCEEEEEEEc
Confidence            677778888999999999999999764    99999998763  122221 11  1234679999999999999999999


Q ss_pred             cCCee-EEEEeeEEEeCCCCCCCceecCCC--ceEeccCCcEEEEEEEeccCCCeEEEeECC--EEcccceEEEeCCEEE
Q psy2775          93 NREGE-AKMDIPVKVNTGKPEKPSILEPLH--DVSITEGESAVLSVQVGGEPSPKVEWYKDG--KLIKDRQITSEKNTHT  167 (785)
Q Consensus        93 ~~~~~-~~~~~~v~v~~~~~~~p~i~~~~~--~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g--~~~~~~~~~~~~~~~~  167 (785)
                      |..|. ......+.|.+..+..|.+.....  ...+.+|+.+.|.|.+. .|.+.++|++++  ..+...   ...... 
T Consensus        72 n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~---~~~~~~-  146 (289)
T 3mjg_X           72 DSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP---YDHQRG-  146 (289)
T ss_dssp             C------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC---EETTTE-
T ss_pred             ccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee---ecCCcC-
Confidence            98875 223344455443333343332222  26788999999999998 677889999864  333211   111111 


Q ss_pred             EEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcce
Q psy2775         168 LTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS  246 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  246 (785)
                      +.    ...|+|.|+|.|.|..+..... ..|.|...                              .+|.+...+....
T Consensus       147 ~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~------------------------------~~p~i~~~~~~~~  192 (289)
T 3mjg_X          147 FS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV------------------------------SSINVSVNAVQTV  192 (289)
T ss_dssp             EE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC------------------------------CCCCCEEEESCSE
T ss_pred             ee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC------------------------------CCCCcEEeCCcce
Confidence            11    3679999999999877655443 55665421                              2344555555567


Q ss_pred             eCCCCeEEEEEEEccCCCCeEEEEECCEEccc----ceEEE----eCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEE
Q psy2775         247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITS----EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  318 (785)
Q Consensus       247 ~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~----~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  318 (785)
                      +.+|+.+.|.|.+.|+|.+.+.|++++.....    .....    ......|.|.++..+|+|.|+|.|.|..|....++
T Consensus       193 v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  272 (289)
T 3mjg_X          193 VRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEK  272 (289)
T ss_dssp             EETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEE
T ss_pred             eEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEE
Confidence            88999999999999999999999987654331    11111    12356899999999999999999999999999999


Q ss_pred             EEEEeccc
Q psy2775         319 NLNVDQGK  326 (785)
Q Consensus       319 ~l~v~~~~  326 (785)
                      .|+|...+
T Consensus       273 ~l~v~~~~  280 (289)
T 3mjg_X          273 AINITVVE  280 (289)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            99998643

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=3.2e-29  Score=255.15  Aligned_cols=270  Identities=17%  Similarity=0.169  Sum_probs=200.0

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...+..+.+.+|++++|.|.+.+.    +.|++++..     ...+....    ..++|.|.+++.+|+|.|+|
T Consensus         2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C   68 (292)
T 4dkd_C            2 GSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLYSDG----SSSILSTNNATFQNTGTYRC   68 (292)
T ss_dssp             --CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEECCBT----TEEEEEESSCCGGGCSCEEE
T ss_pred             CCCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEeccC----ceEEEEEcccccccCEEEEE
Confidence            478999999999999999999999998773    999965431     22222222    13579999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCc-eecCCCceEeccCCcEEEEEEEeccCC--CeEEEeEC-CEEcccceEEEeCCE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPS-ILEPLHDVSITEGESAVLSVQVGGEPS--PKVEWYKD-GKLIKDRQITSEKNT  165 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~-i~~~~~~~~~~~G~~v~l~C~~~g~p~--~~v~W~~~-g~~~~~~~~~~~~~~  165 (785)
                      .+.|..+.....+.|.|..    +|. +...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+...........
T Consensus        69 ~~~n~~~~~~~~~~l~V~~----~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~  143 (292)
T 4dkd_C           69 TEPGDPLGGSAAIHLYVKD----PARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPW  143 (292)
T ss_dssp             CCCC----CCEEECCEECC----SSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSS
T ss_pred             EEccCCCCcceEEEEEEcC----ccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCC
Confidence            9999887777777788763    332 344556788999999999999987 44  78999997 555544432222223


Q ss_pred             EEEEEcccCCCCcEEEEEEEEcCCeeEEE-EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCc
Q psy2775         166 HTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD  244 (785)
Q Consensus       166 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  244 (785)
                      ..|.|.++..+|+|.|+|.|.|..+.... .+.|.|....                            +.+|.+...+..
T Consensus       144 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~----------------------------~~~p~i~~~~~~  195 (292)
T 4dkd_C          144 HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI----------------------------PGPPALTLVPAE  195 (292)
T ss_dssp             SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCC----------------------------CSSCEEEEESSC
T ss_pred             ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCC----------------------------CCCCeEEccCCc
Confidence            34999999999999999999988775544 6778887422                            135777777777


Q ss_pred             ceeCCCCeEEEEEEEccCCC-CeEEEEECCEEcc-cceEEEeC----CEEEEEEccCCCCCCeEEEEEEEeCCCceEEEE
Q psy2775         245 VSITEGESAVLSVQVGGEPS-PKVEWYKDGKLIK-DRQITSEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  318 (785)
Q Consensus       245 ~~~~~G~~~~l~C~~~g~p~-~~v~W~~~~~~l~-~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  318 (785)
                      ..+.+|+.+.|.|.+.+.|+ ..+.|++++..+. ........    ....|.|.++..+|+|.|+|.|.|..|....++
T Consensus       196 ~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  275 (292)
T 4dkd_C          196 LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM  275 (292)
T ss_dssp             BCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEE
T ss_pred             eeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEE
Confidence            77789999999999988665 5788999887665 11111111    235899999999999999999999999999888


Q ss_pred             EEEEecc
Q psy2775         319 NLNVDQG  325 (785)
Q Consensus       319 ~l~v~~~  325 (785)
                      .|.|...
T Consensus       276 ~l~V~~~  282 (292)
T 4dkd_C          276 FFRVVES  282 (292)
T ss_dssp             EECC---
T ss_pred             EEEEeeC
Confidence            8888753

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=2.3e-30  Score=269.20  Aligned_cols=281  Identities=19%  Similarity=0.275  Sum_probs=133.9

Q ss_pred             cCCCeEEecCCcEEEEEEEeC--CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcceeE
Q psy2775         421 PLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESK  498 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~  498 (785)
                      .+....+.+|+.+.|.|.+.+  +.+.+.|+++|..+....++.+.    ...|.|.+++.+|+|.|+|.|.|.|.....
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~   89 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLTQRVLCH   89 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec----cceEEEeecccccCEEEEEEEEeCCeEEEE
Confidence            467778899999999999987  35789999999988766655442    247999999999999999999997555666


Q ss_pred             EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeee----eeeeeeeecC
Q psy2775         499 ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER----FEEKTVKEKG  574 (785)
Q Consensus       499 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~----~~~~~v~~g~  574 (785)
                      +.|.|...+......        .....       ....               .....+|.|..+    .....+.+|+
T Consensus        90 ~~l~V~~~~~~~~~~--------~~~~~-------~~~~---------------~~~~~~p~~~~p~~~~~~~~~v~~g~  139 (334)
T 1ry7_B           90 FSVRVTDAPSSGDDE--------DGEDE-------AEDT---------------GVDTGAPYWTRPERMDKKLLAVPAAN  139 (334)
T ss_dssp             -----------------------------------------------------------CCCCSCCTTCCCCEEEEETTC
T ss_pred             EEEEEeccCcccccc--------ccccc-------cccc---------------cccCCCCEEeccccccceeEEecCCC
Confidence            777776543210000        00000       0000               000112444332    1246788999


Q ss_pred             eEEEEEEEecCCCCceEEEeCCEEecCCCCe-eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeec
Q psy2775         575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK  653 (785)
Q Consensus       575 ~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  653 (785)
                      .++|.|.+.|.|.|.|.|+|++..+....+. .........+|.|.++.. +|+|.|+|.|.|..|....++.|.|....
T Consensus       140 ~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  218 (334)
T 1ry7_B          140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGSIRQTYTLDVLERS  218 (334)
T ss_dssp             CEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCG-GGCCCEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             cEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCc-ccCEEEEEEEEeCCCCEEEEEEEEEecCC
Confidence            9999999999999999999999988765442 122334556899999999 99999999999999998888888886210


Q ss_pred             cCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCCceEEeE---
Q psy2775         654 VGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTV---  730 (785)
Q Consensus       654 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~---  730 (785)
                                                           ..+|.+....+....+..|+.++|.|.+.|.|.|.|.|++   
T Consensus       219 -------------------------------------~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~  261 (334)
T 1ry7_B          219 -------------------------------------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE  261 (334)
T ss_dssp             -------------------------------------CSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCC
T ss_pred             -------------------------------------CCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCc
Confidence                                                 1235554434566778999999999999999999999999   


Q ss_pred             -CCEEeeeccccc--cch--------hhhcccccceeeeeeceEEEEEEecccc
Q psy2775         731 -NGTVIVPSKRVK--GKA--------EFIKKLDDLEVKERENAVLEVEVTSDKA  773 (785)
Q Consensus       731 -~~~~~~~~~~~~--~~~--------~~~~~l~~~~v~~~~~~~~~c~~~~~~~  773 (785)
                       ||..+..+.+..  +..        .....|.+..+...|+|.|+|.+.+...
T Consensus       262 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  315 (334)
T 1ry7_B          262 VNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG  315 (334)
T ss_dssp             GGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSC
T ss_pred             CCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCC
Confidence             787776554321  111        1123688889999999999999987443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=9e-29  Score=254.35  Aligned_cols=260  Identities=19%  Similarity=0.267  Sum_probs=181.4

Q ss_pred             eccceeEeeCccEEEEEEEcCCC-C-----eEEEEECCEEc-------------CCCCcEEEEEc-----CcEEEEEEcC
Q psy2775         332 KLDDLEVKERENAVLEVEVTSDK-A-----DVKWFKDGQEI-------------KTSKKVTIEKK-----GTIRKLLIRN  387 (785)
Q Consensus       332 ~~~~~~~~~g~~~~l~C~~~~~~-~-----~v~W~~~~~~l-------------~~~~~~~~~~~-----~~~~~l~i~~  387 (785)
                      .+....+..|++++|.|.+.+++ +     .++|+|++...             ....++.....     ....+|.|.+
T Consensus         6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            34566778899999999998743 2     48999987532             11222222111     0123499999


Q ss_pred             CCCCCceEEEEEEec-cceEE--EEEE-EecCCcccccCCCeEEecCCcEEEEEEEeC--CCceEEEEECCEEcccCCCE
Q psy2775         388 ISVHDEGEYTCSLPD-QETSA--ELNV-VELPPEISVPLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENV  461 (785)
Q Consensus       388 ~~~~d~G~Y~C~a~n-~~~~~--~~~v-~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~  461 (785)
                      +..+|+|.|+|.+.+ ..+..  .+.+ +..+|.+........+..|+.+.+.|.+.+  |.+.+.|++++..+......
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~  165 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV  165 (313)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEE
T ss_pred             CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccccee
Confidence            999999999998854 33322  2222 223445555555556678889999998764  67889999998876543322


Q ss_pred             EEEEeCc---EEEEEEccCCCCCcEEEEEEEeec-CcceeE--EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCC
Q psy2775         462 TLSIDGK---KQKLIIFSAGLEDAGEYSCRVGDT-GDKESK--ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP  535 (785)
Q Consensus       462 ~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (785)
                      ....++.   .+.|.|.+...+|+|.|+|.|.|. +.....  +.|.|..+                             
T Consensus       166 ~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~-----------------------------  216 (313)
T 4fqp_A          166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP-----------------------------  216 (313)
T ss_dssp             ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE-----------------------------
T ss_pred             eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC-----------------------------
Confidence            2222221   356999999999999999999996 444433  44444433                             


Q ss_pred             ceeeEEeecccccccCCCCCCCCCeEe-eeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCe
Q psy2775         536 DIQVKWLNLFIVPTCPLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGEN  613 (785)
Q Consensus       536 ~~~~~W~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~  613 (785)
                                             |.+. .......+.+|+.++|.|.+.|+|.| .|+|+|+|.++....    ...+  
T Consensus       217 -----------------------P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~----~~~~--  267 (313)
T 4fqp_A          217 -----------------------PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA----VAQG--  267 (313)
T ss_dssp             -----------------------EEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----EEET--
T ss_pred             -----------------------CccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce----EEeC--
Confidence                                   3322 22234456778999999999999999 699999999886432    2222  


Q ss_pred             EEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       614 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .+|.|.++.. +|+|.|+|.|.|..|+...++.|.|+
T Consensus       268 ~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          268 AQLLIRPVDK-PINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             TEEEECCCSS-CCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEECcCCh-hhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            3699999999 99999999999999999888888886

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.96  E-value=4.6e-29  Score=256.97  Aligned_cols=262  Identities=17%  Similarity=0.269  Sum_probs=191.9

Q ss_pred             cceeEeeCccEEEEEEEcCC--CCeEEEEECCEEcCC----CCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccceEE
Q psy2775         334 DDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKT----SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSA  407 (785)
Q Consensus       334 ~~~~~~~g~~~~l~C~~~~~--~~~v~W~~~~~~l~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~  407 (785)
                      ....+.+|+.+.|.|.+.+.  .+.++|++++..+..    ..++... ++   .|.|.++..+|+|.|+|.|.|..+..
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~   88 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-KE---KLWFVPAKVEDSGHYYCVVRNSSYCL   88 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEEC-SS---BEECTTCCGGGCSCCEECCCSSSCCC
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEecc-CC---eEEECCCChhhCEEEEEEEeCCceEE
Confidence            35678999999999999873  579999999865422    2233322 22   39999999999999999999876544


Q ss_pred             EE----EEEecCCcccccC---CCeEEecCCcEEEEEEE------eC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEE
Q psy2775         408 EL----NVVELPPEISVPL---QDVKVSRDEKASFEIEL------TK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLI  473 (785)
Q Consensus       408 ~~----~v~~~~~~~~~~~---~~~~v~~g~~~~l~C~~------~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~  473 (785)
                      ..    .+...+|.+...+   ....+..|+.+.|.|.+      .+ |.+.+.|++++..+..........++   .|.
T Consensus        89 ~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~---~L~  165 (315)
T 1itb_B           89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLI  165 (315)
T ss_dssp             CEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETT---EEE
T ss_pred             EEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCc---eEE
Confidence            33    3344455554332   23567899999999998      55 67789999999998654332222233   799


Q ss_pred             EccCCCCCcEEEEEEEe-ec-Ccc---eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775         474 IFSAGLEDAGEYSCRVG-DT-GDK---ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP  548 (785)
Q Consensus       474 i~~~~~~d~G~Y~C~a~-n~-g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  548 (785)
                      |.+++.+|+|.|+|.|. |. |..   .....+.+..+.                                         
T Consensus       166 i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~-----------------------------------------  204 (315)
T 1itb_B          166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN-----------------------------------------  204 (315)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC-----------------------------------------
T ss_pred             EEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC-----------------------------------------
Confidence            99999999999999999 65 544   223333333221                                         


Q ss_pred             ccCCCCCCCCCeEeeeeee-eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeE-----Eee-------CCeEE
Q psy2775         549 TCPLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-----IFD-------GENII  615 (785)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~-----~~~-------~~~~~  615 (785)
                            ...+|.|...+.. ..+.+|+.++|.|.+.|.|.|.+.|+++|..+..+.....     ...       ...+.
T Consensus       205 ------~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (315)
T 1itb_B          205 ------KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV  278 (315)
T ss_dssp             ------CCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEE
T ss_pred             ------CCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEE
Confidence                  0112666555443 5789999999999999999999999999999977653211     111       12458


Q ss_pred             EEEccCCCCCC-ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         616 LELKEADSETD-AGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       616 L~i~~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      |.|.++.. +| +|.|+|.|.|..|....++.|.|.
T Consensus       279 L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          279 LNISEIES-RFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             EEESSCCG-GGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             EEEeecCH-HHcCCceEEEEecCCCceeEEEEEEec
Confidence            99999999 99 999999999999999999888875

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=1.1e-27  Score=245.39  Aligned_cols=272  Identities=22%  Similarity=0.358  Sum_probs=199.7

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+... .++.+....+.   .++|+|.+++.+|+|.|+
T Consensus         2 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~   78 (305)
T 2nzi_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG---YHQLIIASVTDDDATVYQ   78 (305)
T ss_dssp             CCCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTT---EEEEEESSCCGGGCSEEE
T ss_pred             CCCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCC---EEEEEEccCChhhCeEEE
Confidence            46899999999999999999999999999999999999999988654 34444332221   246999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEeCCCCCCCce-----ecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEE
Q psy2775          89 VVAKNREGEAKMDIPVKVNTGKPEKPSI-----LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QIT  160 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~~~~~~p~i-----~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~  160 (785)
                      |.|.|..|.....+.|.|..    +|.+     ...+....+..|+.+.|.|.+.|.|.+.+.|++++..+...   .+.
T Consensus        79 C~a~n~~g~~~~~~~l~V~~----~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~  154 (305)
T 2nzi_A           79 VRATNQGGSVSGTASLEVEV----PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI  154 (305)
T ss_dssp             EEEEETTEEEEEEEEEEECE----EEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEE
T ss_pred             EEEEcCCCCccceEEEEEec----CCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEE
Confidence            99999999888888888863    3333     22335677889999999999999999999999999887643   233


Q ss_pred             EeCCEEEEEEcc-cCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeee
Q psy2775         161 SEKNTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL  239 (785)
Q Consensus       161 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  239 (785)
                      ......+|.|.+ +..+|.|.|+|.|.|..|.....+.|.|...+.      ++....+.......+.+.|..|      
T Consensus       155 ~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~------~p~~~~~~~~~~~~v~l~w~~p------  222 (305)
T 2nzi_A          155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD------PPRGVKVSDVSRDSVNLTWTEP------  222 (305)
T ss_dssp             ECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCC------CCEEEEEESCCSSCEEEEEECC------
T ss_pred             EcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCC------CCCCceeeeccCCEEEEEEcCC------
Confidence            445667899999 999999999999999999999899999875431      0000000000111111111110      


Q ss_pred             ecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEE
Q psy2775         240 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA  317 (785)
Q Consensus       240 ~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~  317 (785)
                             ...|....+.|.+...+.+...|.+.+...          ...|.|.++...+.|.|+|.|.|..|....+
T Consensus       223 -------~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~----------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          223 -------ASDGGSKITNYIVEKCATTAERWLRVGQAR----------ETRYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             -------SCCSBSCEEEEEEEEEETTSCCEEEEEEES----------SSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             -------ccCCCCceeEEEEEEecCCCCccEECcccc----------CceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence                   123444556666665566666676644321          3479999999999999999999998866544

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=2.6e-28  Score=244.12  Aligned_cols=246  Identities=18%  Similarity=0.230  Sum_probs=183.2

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEe-cCCC--eeEEEECCEEccCCCCEEEeecCCccceEEEEEEccc---CCCCC
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEP--DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSI---KKREE   84 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~---~~~D~   84 (785)
                      .+|.+..   +..+.+|++++|.|.+.| .|.+  .|.|++++..+..    .+...++      .|.+..+   +.+|+
T Consensus         5 ~~p~~~~---~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~------~~~~~~~~~~~~~d~   71 (265)
T 2oz4_A            5 TPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND------SFSAKASVSVTAEDE   71 (265)
T ss_dssp             SCCEEEC---CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS------EEEEEEEEEECGGGC
T ss_pred             CCCcccc---CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC------eEEEEeecccccccC
Confidence            3455543   347899999999999998 6766  9999999998765    2222222      1444443   77787


Q ss_pred             eE--EEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEe
Q psy2775          85 GV--YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE  162 (785)
Q Consensus        85 G~--Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~  162 (785)
                      |.  |+|.|.|..+.....+.|.|...  .+|.+..  ....+.+|+.+.|.|.+.  |.+.++|  +|..+..     .
T Consensus        72 g~g~Y~C~a~n~~~~~~~~~~l~V~~~--p~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~-----~  138 (265)
T 2oz4_A           72 GTQRLTCAVILGNQSQETLQTVTIYSF--PAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP-----L  138 (265)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEECC--CCCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSC-----C
T ss_pred             CcceEEEEEecCCCCcEEEEEEEEeCC--CCceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccC-----C
Confidence            74  99999999998888888888742  2355543  355678899999999997  8899999  8877732     2


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCC-eeEE---EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCee
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKE-GTVE---SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI  238 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~~---~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  238 (785)
                      +....|.|..+..+|+|.|+|.|.|.. |...   ..+.|.|...                                |.+
T Consensus       139 ~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~--------------------------------p~~  186 (265)
T 2oz4_A          139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG--------------------------------PRL  186 (265)
T ss_dssp             SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEE--------------------------------EEC
T ss_pred             CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeC--------------------------------Ccc
Confidence            345678999999999999999998544 5544   5577777633                                222


Q ss_pred             ee--cCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEE
Q psy2775         239 LE--PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES  316 (785)
Q Consensus       239 ~~--~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  316 (785)
                      ..  .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+.      ..+  .+  ..+..+|+|.|+|.|.|..|....
T Consensus       187 ~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~------~~g--~~--~~v~~~d~G~Y~C~a~N~~G~~~~  256 (265)
T 2oz4_A          187 DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL------PIG--ES--VTVTRDLEGTYLCRARSTQGEVTR  256 (265)
T ss_dssp             CGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC------CTT--SC--EECCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC------CCC--cE--EEeehhhCeEEEEEEECCCCcEEE
Confidence            22  2335577899999999999999999999999987221      111  12  237789999999999999999998


Q ss_pred             EEEEEEec
Q psy2775         317 AANLNVDQ  324 (785)
Q Consensus       317 ~~~l~v~~  324 (785)
                      .+.|.|.+
T Consensus       257 ~~~l~V~~  264 (265)
T 2oz4_A          257 EVTVNVLS  264 (265)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            89998874

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=2.1e-28  Score=251.95  Aligned_cols=259  Identities=14%  Similarity=0.115  Sum_probs=181.0

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ...+|.|...|. ..|.+|++++|.|.+.+. .+.+.|+|++..+.....    ....    ...|.|.+++.+|+|.|+
T Consensus        21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~----~~~~----~~~L~I~~v~~~D~G~Y~   90 (316)
T 3vh8_G           21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH----GRIF----QESFNMSPVTTAHAGNYT   90 (316)
T ss_dssp             ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH----HCCB----SSCEEECSCCGGGCEEEE
T ss_pred             CCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec----CCcc----eEEEEECCCCcccCeEEE
Confidence            456899998888 678899999999999876 678999999976543110    0000    134999999999999999


Q ss_pred             EEEEcCC-----eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEE---
Q psy2775          89 VVAKNRE-----GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT---  160 (785)
Q Consensus        89 C~a~~~~-----~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~---  160 (785)
                      |.|.+..     +..+..+.|.|.. .+.+|.+...+... +.+|+.++|.|.+. .+++.+.|+++|..+......   
T Consensus        91 C~a~~~~~~~~~~~~s~~~~l~V~~-~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~  167 (316)
T 3vh8_G           91 CRGSHPHSPTGWSAPSNPVVIMVTG-NHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQI  167 (316)
T ss_dssp             EEEBCSSSSSSBCCCCCCEEEEEEC-SSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEE
T ss_pred             EEEEcCCCCcceecCCCcEEEEEec-CCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeee
Confidence            9998632     2233445666653 23456666554444 88999999999995 456799999999877543211   


Q ss_pred             -EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeE-----EEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCC
Q psy2775         161 -SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV-----ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPE  234 (785)
Q Consensus       161 -~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (785)
                       .......|.|.+++.+|+|.|+|.|.|..|..     +....|.|....                             .
T Consensus       168 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~-----------------------------~  218 (316)
T 3vh8_G          168 HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY-----------------------------E  218 (316)
T ss_dssp             ETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS-----------------------------C
T ss_pred             cCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC-----------------------------C
Confidence             12245689999999999999999999987631     344566665432                             3


Q ss_pred             CCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceE--EE--eCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy2775         235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI--TS--EKNTHTLTLIQCSTKDKGRYSVKVTNK  310 (785)
Q Consensus       235 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~--~~--~~~~~~l~i~~~~~~d~G~Y~C~~~n~  310 (785)
                      +|.+...+. ..+.+|+.++|.|.+. .|.+.+.|+++|..+.....  ..  ......|.|.+++  |+|.|+|.+.|.
T Consensus       219 ~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~  294 (316)
T 3vh8_G          219 KPSLSAQPG-PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFR  294 (316)
T ss_dssp             CCEEEEESC-SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBT
T ss_pred             CCeEEeCCC-CeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecC
Confidence            455655543 3678999999999997 57789999999987652211  11  1123689999999  999999999997


Q ss_pred             CCc
Q psy2775         311 EGT  313 (785)
Q Consensus       311 ~g~  313 (785)
                      .+.
T Consensus       295 ~~~  297 (316)
T 3vh8_G          295 HSP  297 (316)
T ss_dssp             TBT
T ss_pred             CCc
Confidence            654

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=8.9e-27  Score=255.40  Aligned_cols=356  Identities=16%  Similarity=0.207  Sum_probs=216.4

Q ss_pred             CCcceeCCCCeEEEEEEEccCCC----CeEEEEEC--CEEcc-----------------cceEEEe----CCEEEEEEcc
Q psy2775         242 LHDVSITEGESAVLSVQVGGEPS----PKVEWYKD--GKLIK-----------------DRQITSE----KNTHTLTLIQ  294 (785)
Q Consensus       242 ~~~~~~~~G~~~~l~C~~~g~p~----~~v~W~~~--~~~l~-----------------~~~~~~~----~~~~~l~i~~  294 (785)
                      +....+.+|+.++|.|.+.+.+.    ..+.|||.  |..+.                 ..++...    .+..+|.|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (512)
T 1zvo_C            7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS   86 (512)
T ss_pred             CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence            34667889999999999987543    67999985  22110                 0112111    2357899999


Q ss_pred             CCCCCCeEEEEEEEeCCC-----------c--eEEEEEEEEecc---cccee-eeccceeEeeCccEEEEEEEcC--CC-
Q psy2775         295 CSTKDKGRYSVKVTNKEG-----------T--VESAANLNVDQG---KAEFI-KKLDDLEVKERENAVLEVEVTS--DK-  354 (785)
Q Consensus       295 ~~~~d~G~Y~C~~~n~~g-----------~--~~~~~~l~v~~~---~~~~~-~~~~~~~~~~g~~~~l~C~~~~--~~-  354 (785)
                      ++.+|+|.|.|.+.+..+           .  ....+.|.|...   +|.+. ..+.......++.++|.|.+.+  |. 
T Consensus        87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p  166 (512)
T 1zvo_C           87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTS  166 (512)
T ss_pred             CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCc
Confidence            999999999999998642           1  113356777632   22222 1111110224689999999987  33 


Q ss_pred             CeEEEEECCEEcCCC-CcEEEEEcCc---EEEEEEcCCCCCCceEEEEEEeccceEEEEEE--------------EecCC
Q psy2775         355 ADVKWFKDGQEIKTS-KKVTIEKKGT---IRKLLIRNISVHDEGEYTCSLPDQETSAELNV--------------VELPP  416 (785)
Q Consensus       355 ~~v~W~~~~~~l~~~-~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~v--------------~~~~~  416 (785)
                      +.++|++++...... .......++.   .+.|.|.....+ .|.|+|.|.|..+......              +..||
T Consensus       167 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp  245 (512)
T 1zvo_C          167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP  245 (512)
T ss_pred             eEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence            389999865432100 0111111222   245888888777 8999999998655432221              11121


Q ss_pred             ----------------------------------------------------cc-cccCCCeEEecCCcEEEEEEEeCCC
Q psy2775         417 ----------------------------------------------------EI-SVPLQDVKVSRDEKASFEIELTKGD  443 (785)
Q Consensus       417 ----------------------------------------------------~~-~~~~~~~~v~~g~~~~l~C~~~~~~  443 (785)
                                                                          .+ ..++....+.+|+.++|.|.+.+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~  325 (512)
T 1zvo_C          246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSD  325 (512)
T ss_pred             chhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceE
Confidence                                                                11 1122333356799999999999842


Q ss_pred             ---ceEEEEECCEEcccCCC---EEEEEeCc---EEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEE-cCcccccc
Q psy2775         444 ---ALVKWYKDGKEIAFSEN---VTLSIDGK---KQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVE-APAVEFLT  512 (785)
Q Consensus       444 ---~~i~W~~~~~~~~~~~~---~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~-~~~~~~~~  512 (785)
                         ..|+|+++|..+.....   .....++.   .+.|.|.....+|.|.|+|.|.|. +... ...+... +..   ..
T Consensus       326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~---~~  401 (512)
T 1zvo_C          326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ---AP  401 (512)
T ss_pred             CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC---CC
Confidence               37999999988652111   11111221   357999999999999999999997 4332 2222211 100   00


Q ss_pred             cCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEE-EEEEEecCCCC--c
Q psy2775         513 KLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR-LMAKVKASPAP--S  589 (785)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~-l~C~~~g~P~p--~  589 (785)
                      .                                            +|.+.......   +|+.++ |.|.+.|++++  .
T Consensus       402 ~--------------------------------------------~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~  434 (512)
T 1zvo_C          402 V--------------------------------------------KLSLNLLASSD---PPEAASWLLCEVSGFSPPNIL  434 (512)
T ss_pred             C--------------------------------------------CCEEEEEccCc---CCCCceEEEEEEeeeCCCCcE
Confidence            0                                            12222211111   789999 99999996443  6


Q ss_pred             eEEEeCCEEecCCCCe--eEEe-eCCe-----EEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         590 IVWFRNNKPLLSSPKK--REIF-DGEN-----IILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       590 v~W~~~~~~i~~~~~~--~~~~-~~~~-----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      |.|+|||.++..+...  .... .++.     +.|.|..... +|.|.|+|.|.|............|.
T Consensus       435 v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~-~~~g~YtC~v~h~~l~~~~~~~~~~~  502 (512)
T 1zvo_C          435 LMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPS-PQPATYTCVVSHEDSRTLLNASRSLE  502 (512)
T ss_pred             EEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhc-CCCCeEEEEEEecCCCCceEEEEEEE
Confidence            8999999998654211  1122 2222     3577777666 78999999999998765554554444

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=5.2e-28  Score=250.35  Aligned_cols=263  Identities=17%  Similarity=0.249  Sum_probs=170.3

Q ss_pred             ceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcC---------CCCcEEEEEc-----CcEEEEEEcCCCCC
Q psy2775         328 EFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIK---------TSKKVTIEKK-----GTIRKLLIRNISVH  391 (785)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~---------~~~~~~~~~~-----~~~~~l~i~~~~~~  391 (785)
                      .+...+....+.+|+.+.|.|.+.+  |.+.++|++++....         ...++....+     .....|.|.++..+
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            3445566788999999999999987  457999999875421         0113332211     22345999999999


Q ss_pred             CceEEEEEEeccce---------EEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCc--eEEEEECCEEcccCC
Q psy2775         392 DEGEYTCSLPDQET---------SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDA--LVKWYKDGKEIAFSE  459 (785)
Q Consensus       392 d~G~Y~C~a~n~~~---------~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~--~i~W~~~~~~~~~~~  459 (785)
                      |+|.|+|.|.|..+         ...+.|...|...........+.+|+.+.|.|.+.+ +++  .+.|+++|..+....
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~  164 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ  164 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence            99999999988532         245666554432222222356789999999999998 433  899999999886443


Q ss_pred             CEEEEE-e-C---cEEEEEEccCCCCCcEEEEEEEeec-Ccc---eeEEEEEEEcCcccccccCCCeeEEeccCceeEEE
Q psy2775         460 NVTLSI-D-G---KKQKLIIFSAGLEDAGEYSCRVGDT-GDK---ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV  530 (785)
Q Consensus       460 ~~~~~~-~-~---~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (785)
                      ...... . +   ..+.|.|.....+|.|.|+|.|.|. +..   ..+..+.+...                        
T Consensus       165 ~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~------------------------  220 (327)
T 2wng_A          165 TNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIR------------------------  220 (327)
T ss_dssp             EEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBC------------------------
T ss_pred             cccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccC------------------------
Confidence            211110 1 1   1346888888888899999999997 432   12222211110                        


Q ss_pred             EecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEE
Q psy2775         531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI  608 (785)
Q Consensus       531 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~  608 (785)
                                                .+|.+......  +.+|+.++|.|.+.|. |++ .|+|+|||..+..+......
T Consensus       221 --------------------------~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  272 (327)
T 2wng_A          221 --------------------------VPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVT  272 (327)
T ss_dssp             --------------------------BCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCE
T ss_pred             --------------------------CCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceE
Confidence                                      11444433333  7899999999999996 444 89999999998654322222


Q ss_pred             eeC-Ce----EEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         609 FDG-EN----IILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       609 ~~~-~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      ..+ +.    ..|.|..+.. +|+|.|+|.|.|..|....
T Consensus       273 ~~~~g~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~~~~~s  311 (327)
T 2wng_A          273 ENKDGTYNWMSWLLVNVSAH-RDDVKLTCQVEHDGQPAVS  311 (327)
T ss_dssp             ECTTSCEEEEEEEEC--------CCEEEEEEEETTCCCEE
T ss_pred             ECCCCcEEEEEEEEEccccc-cCCCEEEEEEEeCCCCCch
Confidence            222 22    4689999988 9999999999999987644

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=2e-28  Score=256.13  Aligned_cols=264  Identities=18%  Similarity=0.246  Sum_probs=160.6

Q ss_pred             ccceeEeeCccEEEEEEEcC-C-----------CCeEEEEECCE------EcC---CCCcEEEEEcCcEEEEEEcCCCCC
Q psy2775         333 LDDLEVKERENAVLEVEVTS-D-----------KADVKWFKDGQ------EIK---TSKKVTIEKKGTIRKLLIRNISVH  391 (785)
Q Consensus       333 ~~~~~~~~g~~~~l~C~~~~-~-----------~~~v~W~~~~~------~l~---~~~~~~~~~~~~~~~l~i~~~~~~  391 (785)
                      .....+.+|+.+.|.|.+.+ |           .+.++|++++.      .+.   ...++. ..++   .|.|.++..+
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~---~L~i~~~~~~   89 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS-KEKD---VLWFRPTLLN   89 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE-EETT---EEEESSCCGG
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEe-ecCC---EEEEccCChh
Confidence            45677899999999999886 2           38999999873      221   111222 2233   3999999999


Q ss_pred             CceEEEEEEeccceEEE----EEEEecCCcccc---cCCCeEEecCCcEEEEEEE-----eC-CCceEEEEECCEEcccC
Q psy2775         392 DEGEYTCSLPDQETSAE----LNVVELPPEISV---PLQDVKVSRDEKASFEIEL-----TK-GDALVKWYKDGKEIAFS  458 (785)
Q Consensus       392 d~G~Y~C~a~n~~~~~~----~~v~~~~~~~~~---~~~~~~v~~g~~~~l~C~~-----~~-~~~~i~W~~~~~~~~~~  458 (785)
                      |+|.|+|.|.|..+...    +.|...+.....   .+....+.+|+.+.|.|.+     .+ +.+.+.|+|++..+...
T Consensus        90 D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~  169 (349)
T 4dep_C           90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF  169 (349)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC
T ss_pred             hCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc
Confidence            99999999998655443    555553322221   1234567899999999984     44 67889999999988554


Q ss_pred             CCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-Ccc----eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEec
Q psy2775         459 ENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDK----ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS  533 (785)
Q Consensus       459 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (785)
                      ..  +..++  ..|.|.+++.+|+|.|+|.|.|. ++.    .....|.|..++..                        
T Consensus       170 ~~--~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~------------------------  221 (349)
T 4dep_C          170 NN--VIPEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN------------------------  221 (349)
T ss_dssp             SS--EEEET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG------------------------
T ss_pred             cc--eeecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC------------------------
Confidence            33  33333  47999999999999999999996 333    35566666654210                        


Q ss_pred             CCceeeEEeecccccccCCCCCCCCCeEeeeeeee--eeeecCeEEEEEEEe----cCCCCceEEEeCCEEecC-CCCee
Q psy2775         534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK--TVKEKGTIRLMAKVK----ASPAPSIVWFRNNKPLLS-SPKKR  606 (785)
Q Consensus       534 ~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~--~v~~g~~v~l~C~~~----g~P~p~v~W~~~~~~i~~-~~~~~  606 (785)
                                            ..+|.+.......  .+.+|+.++|.|.+.    |.|.|.|.|+++|..+.. ..+..
T Consensus       222 ----------------------~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~  279 (349)
T 4dep_C          222 ----------------------AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVT  279 (349)
T ss_dssp             ----------------------CCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CC
T ss_pred             ----------------------CCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccc
Confidence                                  0124554444332  788999999999999    679999999999998865 22221


Q ss_pred             EEe-------eC--CeEEEEEccCCCCCCc-eeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         607 EIF-------DG--ENIILELKEADSETDA-GDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       607 ~~~-------~~--~~~~L~i~~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      +..       .+  ...+|.|.++.. +|+ |.|+|.|.|..|....++.|.|.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          280 INESISHSRTEDETRTQILSIKKVTS-EDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             CCEEEECCTTCCEEEEECC--------------CEEEEECSSCEEEEECC-----
T ss_pred             cccceeeecCCCcEEEEEEEEeeccH-HHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            110       11  234599999999 999 999999999999999998888863

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=3e-28  Score=247.94  Aligned_cols=266  Identities=19%  Similarity=0.189  Sum_probs=195.5

Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcCCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccc-
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE-  404 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-  404 (785)
                      +|.+...+....+.+|+.++|.|.+.+.   ++|++++..     .......+..+.|.|.++..+|+|.|+|.+.|.. 
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~---v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   75 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVGNGS---VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPL   75 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEECSSC---CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC---
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcCCCc---eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEccCCC
Confidence            4556666677789999999999998874   999965432     2233344455679999999999999999998853 


Q ss_pred             ---eEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeCCC--ceEEEEEC-CEEcccCCCEEEEEeCcEEEEEEccCC
Q psy2775         405 ---TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKD-GKEIAFSENVTLSIDGKKQKLIIFSAG  478 (785)
Q Consensus       405 ---~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~--~~i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~  478 (785)
                         ....+.|...+..+...+....+.+|+.+.|.|.+.++.  +.+.|+++ +..+....++....++   .|.|.++.
T Consensus        76 ~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~  152 (292)
T 4dkd_C           76 GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAK  152 (292)
T ss_dssp             -CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSS---CCEETTCC
T ss_pred             CcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCc---eEEECCCC
Confidence               334445555444445556677889999999999999865  67999997 5555555555444333   39999999


Q ss_pred             CCCcEEEEEEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         479 LEDAGEYSCRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      .+|+|.|+|.|.|. +.. +..+.|.|.....                                                
T Consensus       153 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~------------------------------------------------  184 (292)
T 4dkd_C          153 FIQSQDYQCSALMGGRKVMSISIRLKVQKVIP------------------------------------------------  184 (292)
T ss_dssp             GGGCSEEEEEECSTTSCEECCCEEEEEECCCC------------------------------------------------
T ss_pred             HHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC------------------------------------------------
Confidence            99999999999987 433 3367888875210                                                


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEe--eCCeEEEEEccCCCCCCceeEEEE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      .+|.+...+....+.+|+.++|.|.+.|.|++ .+.|++++..+..........  .....+|.|.++.. +|+|.|+|.
T Consensus       185 ~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~  263 (292)
T 4dkd_C          185 GPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF-QHAGNYSCV  263 (292)
T ss_dssp             SSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCT-TSCEEEEEE
T ss_pred             CCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccCh-hcCeEEEEE
Confidence            02556655666677899999999999998764 789999988765433211111  11335899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEEe
Q psy2775         634 ATNELGSATHGARVTVDV  651 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~~  651 (785)
                      |.|..|....++.|.|..
T Consensus       264 a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          264 ASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             EECSSCEEEEEEEECC--
T ss_pred             EecCCCCceeEEEEEEee
Confidence            999999999988888873

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=242.77  Aligned_cols=254  Identities=17%  Similarity=0.202  Sum_probs=175.1

Q ss_pred             ccceeEeeCccEEEEEEEcCCCCeEEEEECCEEcCCCCcEEEEEcCc-EEEEEEcCCCCCCceEEEEEEeccceE-----
Q psy2775         333 LDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGT-IRKLLIRNISVHDEGEYTCSLPDQETS-----  406 (785)
Q Consensus       333 ~~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~~~-----  406 (785)
                      .....+.+|+.++|.|.+.+.   ++|++++..+.  .+......+. ...|.|.++..+|+|.|+|.|.|..+.     
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~---v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (289)
T 3mjg_X            7 GPELVLNVSSTFVLTCSGSAP---VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER   81 (289)
T ss_dssp             CSEEECCTTCCEEEEEEESSC---CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCC
T ss_pred             CCeEEEeCCCcEEEEEeccce---EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE
Confidence            345678899999999999876   99999998773  2222222222 357999999999999999999986533     


Q ss_pred             EEEEEEec-CCccccc-CCC---eEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCC
Q psy2775         407 AELNVVEL-PPEISVP-LQD---VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLED  481 (785)
Q Consensus       407 ~~~~v~~~-~~~~~~~-~~~---~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  481 (785)
                      ..+.+... |.....+ ...   ..+.+|+.+.|.|.+.+|.+.++|++++........    .+.....+     ...|
T Consensus        82 ~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~----~~~~~~~~-----~~~d  152 (289)
T 3mjg_X           82 KRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVP----YDHQRGFS-----GIFE  152 (289)
T ss_dssp             EEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCC----EETTTEEE-----ECCC
T ss_pred             EeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCcccee----ecCCcCee-----eecc
Confidence            34444333 2211111 111   668899999999999987889999987532221111    11111111     3579


Q ss_pred             cEEEEEEEeecCcce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCC
Q psy2775         482 AGEYSCRVGDTGDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP  559 (785)
Q Consensus       482 ~G~Y~C~a~n~g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p  559 (785)
                      +|.|+|.|.|.+...  ....|.|....                                                  +|
T Consensus       153 ~G~Y~C~a~n~~~~~~s~~~~l~v~~~~--------------------------------------------------~p  182 (289)
T 3mjg_X          153 DRSYICKTTIGDREVDSDAYYVYRLQVS--------------------------------------------------SI  182 (289)
T ss_dssp             SSEEEEEEEETTEEEECCCEEEEECCCC--------------------------------------------------CC
T ss_pred             CcEEEEEEEeCCceeeeeeEEEEecCCC--------------------------------------------------CC
Confidence            999999999863222  23455554421                                                  14


Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEe-----eCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-----DGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~-----~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      .+...+....+.+|++++|.|.+.|+|.|.|+|++++.............     .....+|.|.++.. +|+|.|+|.|
T Consensus       183 ~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a  261 (289)
T 3mjg_X          183 NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL-EDSGTYTCNV  261 (289)
T ss_dssp             CCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCS-SCCEEEEEEE
T ss_pred             CcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccCh-hhCcEEEEEe
Confidence            44444445678999999999999999999999998876553322221111     22457899999999 9999999999


Q ss_pred             EcCCcceEEEEEEEEEe
Q psy2775         635 TNELGSATHGARVTVDV  651 (785)
Q Consensus       635 ~n~~g~~~~~~~l~V~~  651 (785)
                      .|..|....++.|.|..
T Consensus       262 ~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          262 TESVNDHQDEKAINITV  278 (289)
T ss_dssp             EETTTTEEEEEEEEEEE
T ss_pred             ecCCCCceeEEEEEEEE
Confidence            99999999999999985

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.95  E-value=7.2e-29  Score=254.56  Aligned_cols=259  Identities=14%  Similarity=0.180  Sum_probs=176.1

Q ss_pred             cceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcC---------------C--CCcEEEEE-cCcEEEEEEcCCCCCCc
Q psy2775         334 DDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIK---------------T--SKKVTIEK-KGTIRKLLIRNISVHDE  393 (785)
Q Consensus       334 ~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~---------------~--~~~~~~~~-~~~~~~l~i~~~~~~d~  393 (785)
                      +...+..|++++|.|.+.+  +.+.++|+|++....               .  ..+..... .....+|.|.++..+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3567889999999999865  345799998643211               0  01222111 11123499999999999


Q ss_pred             eEEEEEEecc-ceE----EEEEEEecCCcc-cccCCCeEEecCCcEEEEEEEeC--CCceEEEEECCEEcccCCCEEEE-
Q psy2775         394 GEYTCSLPDQ-ETS----AELNVVELPPEI-SVPLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENVTLS-  464 (785)
Q Consensus       394 G~Y~C~a~n~-~~~----~~~~v~~~~~~~-~~~~~~~~v~~g~~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~~~-  464 (785)
                      |.|+|.|.|. .+.    ..+.+...|+.. ...+.......|+.+.|.|.+.+  |.+.++|++++.++......... 
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~  166 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNE  166 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTS
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeee
Confidence            9999999874 222    223333333222 22334444557889999998753  67899999998876432110000 


Q ss_pred             EeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeE--EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEE
Q psy2775         465 IDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESK--ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKW  541 (785)
Q Consensus       465 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  541 (785)
                      .....+.|.|..+..+|+|.|+|.|.|. +.....  +.|.|..+|                                  
T Consensus       167 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P----------------------------------  212 (308)
T 4fom_A          167 TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAP----------------------------------  212 (308)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEE----------------------------------
T ss_pred             cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCC----------------------------------
Confidence            0011357999999999999999999996 554444  444444432                                  


Q ss_pred             eecccccccCCCCCCCCCeEe-eeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEc
Q psy2775         542 LNLFIVPTCPLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELK  619 (785)
Q Consensus       542 ~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~  619 (785)
                                        .+. .......+.+|+.++|.|.+.|+|+| .|.|+|++..+..+..     ..+...|.|.
T Consensus       213 ------------------~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~i~  269 (308)
T 4fom_A          213 ------------------EVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHFVH  269 (308)
T ss_dssp             ------------------EECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEECCS
T ss_pred             ------------------eeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEEEC
Confidence                              222 12224456778999999999999999 6999999988765421     2344567889


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         620 EADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +++. +|+|.|+|.|+|..|....++.|.|.
T Consensus       270 ~v~~-~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          270 PLTF-NYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             CCCS-CCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             CCCh-hhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            9999 99999999999999999888888887

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=3.3e-27  Score=236.10  Aligned_cols=234  Identities=16%  Similarity=0.161  Sum_probs=171.7

Q ss_pred             ceeEeeCccEEEEEEEcC-C-CC--eEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCC---CCCCce--EEEEEEeccce
Q psy2775         335 DLEVKERENAVLEVEVTS-D-KA--DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI---SVHDEG--EYTCSLPDQET  405 (785)
Q Consensus       335 ~~~~~~g~~~~l~C~~~~-~-~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~---~~~d~G--~Y~C~a~n~~~  405 (785)
                      +..+.+|+.++|.|.+.+ . .+  .++|+++|..+..    .+...+..  |.+..+   ...|.|  .|+|.+.|..+
T Consensus        12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~~--~~~~~~~~~~~~d~g~g~Y~C~a~n~~~   85 (265)
T 2oz4_A           12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDS--FSAKASVSVTAEDEGTQRLTCAVILGNQ   85 (265)
T ss_dssp             CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSSE--EEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred             CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCCe--EEEEeecccccccCCcceEEEEEecCCC
Confidence            447889999999999987 3 34  9999999998865    23333332  444444   677777  49999998655


Q ss_pred             E----EEEEEEecCCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCC
Q psy2775         406 S----AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLED  481 (785)
Q Consensus       406 ~----~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  481 (785)
                      .    ..+.|...|+ ....+....+.+|+.++|.|.+. +.+.++|  +|..+...        +....|.|..+..+|
T Consensus        86 ~~~~~~~l~V~~~p~-p~~~~~~~~v~~G~~v~l~C~~~-p~~~i~W--~g~~~~~~--------~~~~~l~i~~~~~~~  153 (265)
T 2oz4_A           86 SQETLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEAH-PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDN  153 (265)
T ss_dssp             EEEEEEEEEEECCCC-CEEEESCSEEETTCEEEEEEECC-TTSEEEE--SSCSSSCC--------SSEECCEEECCGGGT
T ss_pred             CcEEEEEEEEeCCCC-ceeecCCceecCCCcEEEEEEcc-CCCEEEE--CCEEccCC--------CCcEEEEEccccccC
Confidence            4    3455554443 22223456688999999999998 8899999  88777322        233578999999999


Q ss_pred             cEEEEEEEeec--Ccce---eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         482 AGEYSCRVGDT--GDKE---SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       482 ~G~Y~C~a~n~--g~~~---~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      +|.|+|.|.|.  |...   ..+.|.|..+|......                                           
T Consensus       154 ~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~-------------------------------------------  190 (265)
T 2oz4_A          154 GRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD-------------------------------------------  190 (265)
T ss_dssp             TEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGG-------------------------------------------
T ss_pred             CceEEEEEEcCCCCCcccccccEEEEEEeCCcccccc-------------------------------------------
Confidence            99999999863  5544   56778887664211110                                           


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                             .+.+..+.+|+.++|.|.+.|+|.|.+.|+|++..+....         .  |.  .++. +|+|.|+|.|.|
T Consensus       191 -------~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g---------~--~~--~v~~-~d~G~Y~C~a~N  249 (265)
T 2oz4_A          191 -------CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------E--SV--TVTR-DLEGTYLCRARS  249 (265)
T ss_dssp             -------SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT---------S--CE--ECCG-GGCEEEEEEEEE
T ss_pred             -------CCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCC---------c--EE--Eeeh-hhCeEEEEEEEC
Confidence                   1225578899999999999999999999999998332221         1  21  3667 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|+
T Consensus       250 ~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          250 TQGEVTREVTVNVL  263 (265)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEe
Confidence            99999999998886

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=255.81  Aligned_cols=270  Identities=18%  Similarity=0.165  Sum_probs=197.9

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEe-------C-CCceEEEEECCEEc--ccCCCEEEEEeCcEEEEEEccCCCCCcE
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELT-------K-GDALVKWYKDGKEI--AFSENVTLSIDGKKQKLIIFSAGLEDAG  483 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~-------~-~~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G  483 (785)
                      ..|.+...+....+.+|+.+.|.|.+.       + +.+.|.|++++..+  .......+...+.  .|.|.+++.+|+|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G   94 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSG   94 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCCE
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccCE
Confidence            346666777888999999999999996       5 67789999999874  3322333333332  7999999999999


Q ss_pred             EEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEe
Q psy2775         484 EYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI  562 (785)
Q Consensus       484 ~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~  562 (785)
                      .|+|.|.|. |....++.|.|..++....                                               +.+ 
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~-----------------------------------------------~~~-  126 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDAFL-----------------------------------------------PFI-  126 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGGGH-----------------------------------------------HHH-
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCccc-----------------------------------------------ccc-
Confidence            999999997 7777788888887642110                                               000 


Q ss_pred             eeeeeeeeeecCeEEEEEE-----EecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         563 ERFEEKTVKEKGTIRLMAK-----VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~-----~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                        .....+.+|+.++|.|.     +.|.|.|.|.|+|+|..+..+...... ..+...|.|.++.. +|+|.|+|.|.|.
T Consensus       127 --~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~-~~~~~~L~i~~v~~-~d~G~Y~C~a~n~  202 (339)
T 3o4o_C          127 --SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS-VRGTTHLLVHDVAL-EDAGYYRCVLTFA  202 (339)
T ss_dssp             --CEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE-CTTSSEEEESSCCG-GGCEEEEEEEECC
T ss_pred             --ccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE-cCCcceEEEcccCH-hhCeEEEEEEEEC
Confidence              01346789999999999     899999999999999998765433332 23335799999999 9999999999999


Q ss_pred             Ccc----eEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEE
Q psy2775         638 LGS----ATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK  713 (785)
Q Consensus       638 ~g~----~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~  713 (785)
                      .|.    ...++.|.|....                                    ...+|.+... +....+..|+.++
T Consensus       203 ~g~~~~~~~~~~~l~V~~~~------------------------------------~~~~P~i~~~-~~~~~v~~G~~v~  245 (339)
T 3o4o_C          203 HEGQQYNITRSIELRIKKKK------------------------------------EETIPVIISP-LKTISASLGSRLT  245 (339)
T ss_dssp             BTTBCCEEEEEEEEEEECCC------------------------------------CCCCCEECCC-SCCCCCCCCSCCC
T ss_pred             CCCeEEEEEEEEEEEEEcCC------------------------------------CCCCCEEecC-CceeEeccCCCEE
Confidence            884    4555666665211                                    1134555442 4555688999999


Q ss_pred             EEEEE---ecCC-CCceEEeECCEEeeec---------cccccchh----hhcccccceeeeeec-eEEEEEEecccce
Q psy2775         714 IEVRF---KALP-PPKAEWTVNGTVIVPS---------KRVKGKAE----FIKKLDDLEVKEREN-AVLEVEVTSDKAD  774 (785)
Q Consensus       714 l~C~~---~g~P-~p~i~W~~~~~~~~~~---------~~~~~~~~----~~~~l~~~~v~~~~~-~~~~c~~~~~~~~  774 (785)
                      |.|.+   .|.| +|.+.|++||..+...         .++.....    +...|.+..+...|. |.|+|.+.+..+.
T Consensus       246 L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~  324 (339)
T 3o4o_C          246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF  324 (339)
T ss_dssp             CCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEE
T ss_pred             EEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCc
Confidence            99999   9999 8899999999876432         22222111    112688999999997 9999999975443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=1.8e-27  Score=244.82  Aligned_cols=273  Identities=13%  Similarity=0.129  Sum_probs=178.7

Q ss_pred             eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCC
Q psy2775          96 GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCST  175 (785)
Q Consensus        96 ~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~  175 (785)
                      +++.......+......+|.|...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+.... ........|.|.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~~~~~~L~I~~v~~   83 (316)
T 3vh8_G            7 GSGSDDDDKGSHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGRIFQESFNMSPVTT   83 (316)
T ss_dssp             -----------------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHCCBSSCEEECSCCG
T ss_pred             CCCCCCcccccccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCCcceEEEEECCCCc
Confidence            33333333344444457788877765 568899999999999877 67999999998765421 1112345799999999


Q ss_pred             CCcEEEEEEEEcCC-----eeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCC
Q psy2775         176 KDKGRYSVKVTNKE-----GTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEG  250 (785)
Q Consensus       176 ~d~G~Y~C~a~n~~-----g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G  250 (785)
                      +|+|.|+|.|.|..     +..+..+.|.|....                             .+|.+...+... +.+|
T Consensus        84 ~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~-----------------------------~~p~~~~~~~~~-v~~G  133 (316)
T 3vh8_G           84 AHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNH-----------------------------RKPSLLAHPGPL-VKSG  133 (316)
T ss_dssp             GGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSS-----------------------------CCCEEEEESCSE-EETT
T ss_pred             ccCeEEEEEEEcCCCCcceecCCCcEEEEEecCC-----------------------------CCCeEEecCCCc-cCCC
Confidence            99999999998643     223344666665432                             345565554443 7899


Q ss_pred             CeEEEEEEEccCCCCeEEEEECCEEcccce----EEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce-----EEEEEEE
Q psy2775         251 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV-----ESAANLN  321 (785)
Q Consensus       251 ~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~-----~~~~~l~  321 (785)
                      +.++|.|.+. .+++.+.|+++|..+....    .........|.|.++..+|+|.|+|.|.|..|..     ...+.|.
T Consensus       134 ~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~  212 (316)
T 3vh8_G          134 ERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIV  212 (316)
T ss_dssp             CCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEE
T ss_pred             CeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEE
Confidence            9999999995 4667999999998765221    1112245689999999999999999999987642     3346666


Q ss_pred             Eecc--ccceeeeccceeEeeCccEEEEEEEcCCCCeEEEEECCEEcCCCCcEEEEEcC-cEEEEEEcCCCCCCceEEEE
Q psy2775         322 VDQG--KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKG-TIRKLLIRNISVHDEGEYTC  398 (785)
Q Consensus       322 v~~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C  398 (785)
                      |...  ++.+...+ ...+.+|+.++|.|.+..+.+.+.|+++|..+...........+ ....|.|.+++  |+|.|+|
T Consensus       213 V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C  289 (316)
T 3vh8_G          213 VTGPYEKPSLSAQP-GPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRC  289 (316)
T ss_dssp             EECSSCCCEEEEES-CSCCCTTSCCEEEEEESSCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEE
T ss_pred             ecCCCCCCeEEeCC-CCeecCCCcEEEEEECCCCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEE
Confidence            7642  33333332 23678999999999999888999999999876532211111122 23569999999  9999999


Q ss_pred             EEeccce
Q psy2775         399 SLPDQET  405 (785)
Q Consensus       399 ~a~n~~~  405 (785)
                      .|.|..+
T Consensus       290 ~a~n~~~  296 (316)
T 3vh8_G          290 FGSFRHS  296 (316)
T ss_dssp             EEEBTTB
T ss_pred             EeecCCC
Confidence            9998543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=2e-24  Score=229.52  Aligned_cols=349  Identities=17%  Similarity=0.259  Sum_probs=230.9

Q ss_pred             CCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeEC--CEEcccc------e--EEEeCCEEEEEEcccCCCCcEEEE
Q psy2775         113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD--GKLIKDR------Q--ITSEKNTHTLTLIQCSTKDKGRYS  182 (785)
Q Consensus       113 ~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~--g~~~~~~------~--~~~~~~~~~L~i~~~~~~d~G~Y~  182 (785)
                      +|.|.. +.+..+.+|+.+.|.|.+.|.|.+.|+|+|+  |..+...      .  +.......+|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            356665 4567788899999999999999999999999  8887542      2  222345779999999999999999


Q ss_pred             EEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccC
Q psy2775         183 VKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE  262 (785)
Q Consensus       183 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~  262 (785)
                      |.|.|..|..+..+.|.|..                                +|.+...+....+.+|+.+.|.|.+.|.
T Consensus        80 C~a~n~~g~~~~~~~l~V~~--------------------------------~P~~~~~~~~~~~~~g~~~~l~C~~~g~  127 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEY--------------------------------APKFISNQTIYYSWEGNPINISCDVKSN  127 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEE--------------------------------EEEECCSCCEEEECTTCCEEEEECEEEE
T ss_pred             EEEEeCCCCcceEEEEEEEe--------------------------------CCEEecCcceEEeccCCEEEEEEEEEec
Confidence            99999999988889999873                                2455554444567899999999999999


Q ss_pred             CCCeEEEEECCEEccc-----ceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEEeccccceeeecccee
Q psy2775         263 PSPKVEWYKDGKLIKD-----RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE  337 (785)
Q Consensus       263 p~~~v~W~~~~~~l~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~  337 (785)
                      |.+.+.|+++|..+..     ..+........|.|.++..+|+|.|+|.|.|..|.....+.+.+...|.... .. ...
T Consensus       128 p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~-~~-~~~  205 (389)
T 2jll_A          128 PPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPY-GV-KII  205 (389)
T ss_dssp             SCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCE-EE-EEE
T ss_pred             CCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCc-ce-EEe
Confidence            9999999999998862     2233445567899999999999999999999999988888887765433211 11 112


Q ss_pred             EeeCccEEEEEEEcC---CCC----eEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccceEEE--
Q psy2775         338 VKERENAVLEVEVTS---DKA----DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE--  408 (785)
Q Consensus       338 ~~~g~~~~l~C~~~~---~~~----~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~--  408 (785)
                      ...+..+.|.|....   ..+    .+.|.+++...    .......+....|.|.++...+.|.|+|.|.|..+...  
T Consensus       206 ~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s  281 (389)
T 2jll_A          206 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI----WKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS  281 (389)
T ss_dssp             EECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSC----CEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCC
T ss_pred             eccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcc----cEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCC
Confidence            233567888887532   112    56777765421    11222333334599999999999999999998765322  


Q ss_pred             --EEEEecCCcccccCCCe-EEecCCcEEEEEEEeC--CCc--e--EEEEECCEEcccCCCEEEEEeCcEEEEEEccCCC
Q psy2775         409 --LNVVELPPEISVPLQDV-KVSRDEKASFEIELTK--GDA--L--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGL  479 (785)
Q Consensus       409 --~~v~~~~~~~~~~~~~~-~v~~g~~~~l~C~~~~--~~~--~--i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  479 (785)
                        +.+...+.....++... ....+..+.|.+....  +.+  .  +.|...+..-   ........+....++|.++..
T Consensus       282 ~~~~~~t~~~~~p~~p~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~~~~i~~L~~  358 (389)
T 2jll_A          282 KIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKED---QWLEKKVQGNKDHIILEHLQW  358 (389)
T ss_dssp             CCEEEECCCCCCCCCCCEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC--------CCBCCEECTTCCEEEECSCCT
T ss_pred             cceEEEecCCCCCCCCccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCc---ceeEeeccCCcceEEeCCcCC
Confidence              22222221111222211 1224567777766422  111  1  2332211110   000111223334678889998


Q ss_pred             CCcEEEEEEEeec-CcceeEEEEEEE
Q psy2775         480 EDAGEYSCRVGDT-GDKESKATLTVE  504 (785)
Q Consensus       480 ~d~G~Y~C~a~n~-g~~~~~~~l~V~  504 (785)
                      .....|+..|.|. |... ...+.+.
T Consensus       359 ~t~Y~~~V~A~n~~G~s~-~s~~~~~  383 (389)
T 2jll_A          359 TMGYEVQITAANRLGYSE-PTVYEFS  383 (389)
T ss_dssp             TCEEEEEEEEEC-CCBCC-CEEEEEE
T ss_pred             CCEEEEEEEEEcCCcCCC-ceeeEec
Confidence            8889999999997 5433 3333444

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=2e-25  Score=228.51  Aligned_cols=266  Identities=22%  Similarity=0.336  Sum_probs=203.6

Q ss_pred             ccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCC-cEEEEE-cCcEEEEEEcCCCCCCceEEEEEEec
Q psy2775         326 KAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSK-KVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPD  402 (785)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n  402 (785)
                      +|.+...+....+.+|+.++|.|.+.+ |.+.++|+++|..+.... ++.+.. .+....|.|.++..+|+|.|+|.|.|
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n   83 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN   83 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEc
Confidence            566777777889999999999999977 678999999999987654 554433 45556799999999999999999998


Q ss_pred             cceEE----EEEEEecC----CcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEE
Q psy2775         403 QETSA----ELNVVELP----PEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLI  473 (785)
Q Consensus       403 ~~~~~----~~~v~~~~----~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~  473 (785)
                      ..+..    .+.|...|    +.....+....+..|+.+.|.|.+.+ +.+.+.|++++..+....++.+...+....|.
T Consensus        84 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~  163 (305)
T 2nzi_A           84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLV  163 (305)
T ss_dssp             TTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEE
T ss_pred             CCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEE
Confidence            76543    33333211    22222345677889999999999998 78899999999998888888887777778999


Q ss_pred             Ecc-CCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEE-ecCCceeeEEeeccccccc
Q psy2775         474 IFS-AGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLNLFIVPTC  550 (785)
Q Consensus       474 i~~-~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~W~~~~~~~~~  550 (785)
                      |.+ +..+|+|.|+|.|.|. |....++.|.|..+|..     |          ..+.+. +....+.+.|..+.     
T Consensus       164 i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~-----p----------~~~~~~~~~~~~v~l~w~~p~-----  223 (305)
T 2nzi_A          164 FPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP-----P----------RGVKVSDVSRDSVNLTWTEPA-----  223 (305)
T ss_dssp             ETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCC-----C----------EEEEEESCCSSCEEEEEECCS-----
T ss_pred             EecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCC-----C----------CCceeeeccCCEEEEEEcCCc-----
Confidence            999 9999999999999998 88888899998876421     1          111221 33456667774221     


Q ss_pred             CCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       551 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                                          ..|....+.|.+.+.|.+...|++.+...             ...|.|.++.. .+.|.|
T Consensus       224 --------------------~~g~~~i~~y~v~~~~~~~~~w~~~~~~~-------------~~~~~i~~l~~-~~~y~~  269 (305)
T 2nzi_A          224 --------------------SDGGSKITNYIVEKCATTAERWLRVGQAR-------------ETRYTVINLFG-KTSYQF  269 (305)
T ss_dssp             --------------------CCSBSCEEEEEEEEEETTSCCEEEEEEES-------------SSEEEECSCCS-SCEEEE
T ss_pred             --------------------cCCCCceeEEEEEEecCCCCccEECcccc-------------CceEEecCCCC-CCeEEE
Confidence                                23555678899988888899998865432             33589999999 999999


Q ss_pred             EEEEEcCCcceEEEE
Q psy2775         631 KVVATNELGSATHGA  645 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~  645 (785)
                      +|.|.|..|....+.
T Consensus       270 ~~~A~N~~G~~~~S~  284 (305)
T 2nzi_A          270 RVIAENKFGLSKPSE  284 (305)
T ss_dssp             EEEEEETTEECCCCC
T ss_pred             EEEEEeCCcccCCcC
Confidence            999999999765543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.94  E-value=5.8e-27  Score=241.74  Aligned_cols=276  Identities=13%  Similarity=0.173  Sum_probs=181.5

Q ss_pred             cCCCCeeeecCCceEecCC--CeEEEEEEEEec-C-CCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCC
Q psy2775           9 EGIPPTFSKKTKPVYAEEN--SEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G--~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      ...||.+...+.......|  ++++|.|.+.|. | .+.|.|+++|..+...... .....++.....+.|+|.+++.+|
T Consensus         4 ~~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d   83 (323)
T 2wqr_A            4 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS   83 (323)
T ss_dssp             CCCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHT
T ss_pred             CCCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCC
Confidence            3457777665444334445  699999999886 4 4789999999988654321 111123444445679999999999


Q ss_pred             CeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCce-ecCCCceEeccCCcEEEEEEEecc-CCC---eEEEeECC-EEcccc
Q psy2775          84 EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGE-PSP---KVEWYKDG-KLIKDR  157 (785)
Q Consensus        84 ~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i-~~~~~~~~~~~G~~v~l~C~~~g~-p~~---~v~W~~~g-~~~~~~  157 (785)
                      +|.|+|.|.|..+.....+.+.+.. ....|.+ ..++....+.+|+.+.|.|.+.|. |.+   .|+|++++ ..+...
T Consensus        84 ~g~Y~C~a~n~~~~~~~~~~~~~~~-~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~  162 (323)
T 2wqr_A           84 DRTYTCQVTYQGHTFEDSTKKCADS-NPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS  162 (323)
T ss_dssp             TCCEEEEEEETTEEEEEEECCCCCS-SGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC
T ss_pred             CCcEEEEEEeCCCCcceeeecCCCC-CCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc
Confidence            9999999999887655443321111 1123333 444555668899999999999875 455   89999964 444321


Q ss_pred             e-EE--EeC----CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecC
Q psy2775         158 Q-IT--SEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT  230 (785)
Q Consensus       158 ~-~~--~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (785)
                      . ..  ...    ....|.|.++..+|+|.|+|.|.|..+...  ..+.|....                          
T Consensus       163 ~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~~~~--------------------------  214 (323)
T 2wqr_A          163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRA--LMRSTTKTS--------------------------  214 (323)
T ss_dssp             CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC--EEEEECCCC--------------------------
T ss_pred             cCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCC--eeeEEEccC--------------------------
Confidence            1 11  111    245799999999999999999999864322  233332110                          


Q ss_pred             CCCCCCeeeecCCcceeCCCCeEEEEEEEcc-CCCC-eEEEEECCEEcccceEE------EeC----CEEEEEEccCCCC
Q psy2775         231 GKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQIT------SEK----NTHTLTLIQCSTK  298 (785)
Q Consensus       231 ~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~~-~v~W~~~~~~l~~~~~~------~~~----~~~~l~i~~~~~~  298 (785)
                      ....+|.+...+.......|+.++|.|.+.| .|++ .|.|+++|..+......      ..+    ..+.|.|..+..+
T Consensus       215 ~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~  294 (323)
T 2wqr_A          215 GPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWE  294 (323)
T ss_dssp             SCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHH
T ss_pred             CCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHcc
Confidence            0013344443222222234999999999988 4543 89999999988633111      111    1357999999999


Q ss_pred             CCeEEEEEEEeCCCc
Q psy2775         299 DKGRYSVKVTNKEGT  313 (785)
Q Consensus       299 d~G~Y~C~~~n~~g~  313 (785)
                      |+|.|+|.|.|....
T Consensus       295 d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          295 QKDEFICRAVHEAAS  309 (323)
T ss_dssp             HCCCEEEEEECTTST
T ss_pred             CCCEEEEEEEeCCCC
Confidence            999999999998765

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.94  E-value=9.9e-26  Score=213.85  Aligned_cols=187  Identities=31%  Similarity=0.493  Sum_probs=160.2

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCC--CEEEEEeCcEEEEEEccCCCCCcEEEEEEEe
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSE--NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG  490 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  490 (785)
                      .+|.+...+....+.+|+.++|.|.+.+ +.+.+.|++++..+....  +..+...+....|.|.+++.+|+|.|+|.|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            3567777778889999999999999988 778999999999887654  5666667777899999999999999999999


Q ss_pred             ec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeee
Q psy2775         491 DT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT  569 (785)
Q Consensus       491 n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~  569 (785)
                      |. |....+..|.|.....                                                 +|.+...+....
T Consensus        84 n~~~~~~~~~~l~v~~~~~-------------------------------------------------~p~~~~~~~~~~  114 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETA-------------------------------------------------PPNFVQRLQSMT  114 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCE-------------------------------------------------EEEEEECCCCEE
T ss_pred             cCCceEeEEEEEEEccCCC-------------------------------------------------CCEEEeCCccEE
Confidence            97 6667777888875321                                                 155555566778


Q ss_pred             eeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         570 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      +.+|+.++|.|.+.|+|.|.+.|+|+|..+..+.++.+..++...+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus       115 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYP-EDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECG-GGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCCh-hcCeEEEEEEEeCCCceEEEEEEEE
Confidence            999999999999999999999999999999888888777788888999999999 9999999999999999998888887


Q ss_pred             E
Q psy2775         650 D  650 (785)
Q Consensus       650 ~  650 (785)
                      +
T Consensus       194 ~  194 (194)
T 2a38_A          194 Q  194 (194)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.94  E-value=1.6e-25  Score=232.26  Aligned_cols=261  Identities=17%  Similarity=0.215  Sum_probs=186.9

Q ss_pred             CCceecCCCceEeccCCcEEEEEEEecc----CCCeEEEeECC--EEc-------------c---cceEEE---eCCEEE
Q psy2775         113 KPSILEPLHDVSITEGESAVLSVQVGGE----PSPKVEWYKDG--KLI-------------K---DRQITS---EKNTHT  167 (785)
Q Consensus       113 ~p~i~~~~~~~~~~~G~~v~l~C~~~g~----p~~~v~W~~~g--~~~-------------~---~~~~~~---~~~~~~  167 (785)
                      ++.+...+..+.+.+|+.+.|.|.+.+.    +.+.+.|++++  ...             .   ...+..   .....+
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            3344455567889999999999999775    44579999954  111             0   011111   223557


Q ss_pred             EEEcccCCCCcEEEEEE-EEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCee--eecCCc
Q psy2775         168 LTLIQCSTKDKGRYSVK-VTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI--LEPLHD  244 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~-a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~  244 (785)
                      |.|.+++.+|+|.|+|. +.+..+.....+.|.|...                                |.+  ......
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~--------------------------------p~~~~~~~~~~  141 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAK--------------------------------PTNWIEGTQAV  141 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC--------------------------------CEEEEEECSSC
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecC--------------------------------CcceeecCCCc
Confidence            99999999999999998 5566787777888888743                                222  223445


Q ss_pred             ceeCCC---CeEEEEEE-EccCCCCeEEEEECCEEccc-ceEEEeCC----EEEEEEccCCCCCCeEEEEEEEeCCCceE
Q psy2775         245 VSITEG---ESAVLSVQ-VGGEPSPKVEWYKDGKLIKD-RQITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVE  315 (785)
Q Consensus       245 ~~~~~G---~~~~l~C~-~~g~p~~~v~W~~~~~~l~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  315 (785)
                      ..+.+|   +.+.|.|. +.+.|.+.+.|++++..... .......+    ...|.|..+..+|+|.|+|.|.|..|...
T Consensus       142 ~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~  221 (331)
T 3u83_A          142 LRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK  221 (331)
T ss_dssp             EEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEE
T ss_pred             eeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcce
Confidence            667788   77999998 78999999999995322211 11111111    24699999999999999999999998888


Q ss_pred             EEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCe-EEEEECCEEcCCCCcEEEEEcCcEEEEEEc-CCCCCC
Q psy2775         316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKAD-VKWFKDGQEIKTSKKVTIEKKGTIRKLLIR-NISVHD  392 (785)
Q Consensus       316 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~-~~~~~d  392 (785)
                      .++.|.|...|...........+.+|+.+.|.|.+.+ |.+. +.|++++..+.....   ..++   .|.|. ++..+|
T Consensus       222 ~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~---~~~~---~L~i~~~v~~~d  295 (331)
T 3u83_A          222 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE---AQNR---TLFFKGPINYSL  295 (331)
T ss_dssp             EEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE---EETT---EEEECSCCCGGG
T ss_pred             eeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccce---ecCc---EEEEeCCCcccc
Confidence            8888888865543334445556888999999999987 6676 999999988865422   2333   39999 999999


Q ss_pred             ceEEEEEEeccceEEEEEE
Q psy2775         393 EGEYTCSLPDQETSAELNV  411 (785)
Q Consensus       393 ~G~Y~C~a~n~~~~~~~~v  411 (785)
                      +|.|+|.|.|..+.....+
T Consensus       296 ~G~Y~C~a~N~~G~~~~~~  314 (331)
T 3u83_A          296 AGTYICEATNPIGTRSGQV  314 (331)
T ss_dssp             CEEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEEEEeccccceEEE
Confidence            9999999999877665443

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.94  E-value=5.2e-25  Score=208.83  Aligned_cols=188  Identities=29%  Similarity=0.507  Sum_probs=158.2

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ...||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....  +..+...++    ...|+|.+++.+|+|.
T Consensus         2 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~   77 (194)
T 2a38_A            2 TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTIPAVTKANSGR   77 (194)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETT----EEEEEESSCCGGGCEE
T ss_pred             CCCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCC----EEEEEECCCCcccCEE
Confidence            4578999999999999999999999999999999999999998876653  344433322    2569999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEEEeC
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK  163 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~  163 (785)
                      |+|.+.|..+.......|.|.. ...+|.+...+....+..|+.+.|.|.+.|.|.+.++|+++|..+...   .....+
T Consensus        78 Y~C~~~n~~~~~~~~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~  156 (194)
T 2a38_A           78 YSLKATNGSGQATSTAELLVKA-ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG  156 (194)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC-CCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEET
T ss_pred             EEEEEEcCCceEeEEEEEEEcc-CCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcC
Confidence            9999999999888877787763 234667777777888999999999999999999999999999988654   234445


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      ...+|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       157 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             TEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            56689999999999999999999999998888888773

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.93  E-value=1.1e-25  Score=234.22  Aligned_cols=287  Identities=15%  Similarity=0.217  Sum_probs=179.2

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEEC--CEEcc-----------------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYN--GEPLQ-----------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ...|..+.+.+|++++|.|.+.+.+  .+.|.|+|+  +..+.                 ...++.+..+..  ....+|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L   81 (344)
T 1za6_B            4 LVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTS--ASTAYV   81 (344)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETT--TTEEEE
T ss_pred             eeCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecC--CCEEEE
Confidence            3456678999999999999998863  578999997  32210                 123454443321  123569


Q ss_pred             EEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeECCE
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKDGK  152 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~g~  152 (785)
                      +|.+++.+|+|.|+|.|.|..+.......|.|....+.+|.+........+.+|+.+.|.|.+.|. |. +.|+|+++|.
T Consensus        82 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~  161 (344)
T 1za6_B           82 ELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  161 (344)
T ss_dssp             EECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTB
T ss_pred             EECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCc
Confidence            999999999999999999966555455677776544556666544334456799999999999886 54 6999999997


Q ss_pred             Ecccc---eEEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccce
Q psy2775         153 LIKDR---QITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT  225 (785)
Q Consensus       153 ~~~~~---~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~  225 (785)
                      .+...   .....++    ...|.|.++..+| |.|+|.|.|..+.......+.+..... . ...++      ......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~-~-~~~~~------~~~~~~  232 (344)
T 1za6_B          162 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDK-T-HTCPP------CGGGSS  232 (344)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC----------------------
T ss_pred             cCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeeccccccc-c-cccCC------CCCCcc
Confidence            64211   0111111    3478998888878 999999999887654433332110000 0 00000      000000


Q ss_pred             eeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccC-C-CCeEEEEECCEEcccce---EE-EeCC----EEEEEEccC
Q psy2775         226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-P-SPKVEWYKDGKLIKDRQ---IT-SEKN----THTLTLIQC  295 (785)
Q Consensus       226 ~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~~~v~W~~~~~~l~~~~---~~-~~~~----~~~l~i~~~  295 (785)
                      +........+|.+..........+|..++|.|.+.|. | .+.++|+++|..+....   .. ..++    .+.|.|...
T Consensus       233 l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~  312 (344)
T 1za6_B          233 GGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKS  312 (344)
T ss_dssp             ------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHH
T ss_pred             ccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChH
Confidence            0000011234555443333223356679999999885 4 35899999998876321   11 1122    235677777


Q ss_pred             CCCCCeEEEEEEEeCCCc
Q psy2775         296 STKDKGRYSVKVTNKEGT  313 (785)
Q Consensus       296 ~~~d~G~Y~C~~~n~~g~  313 (785)
                      ..+|+|.|+|.|.|....
T Consensus       313 ~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          313 RWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             HHHTTCEEEEEEECTTST
T ss_pred             HccCCCeEEEEEEcCCCC
Confidence            777899999999997543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.93  E-value=9e-25  Score=210.32  Aligned_cols=189  Identities=21%  Similarity=0.385  Sum_probs=156.0

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEcc-CCCCEEEeecCCccceEEEEEEcccCC-CCCeEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDMHSYVSIVTIKSIKK-REEGVY   87 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y   87 (785)
                      ..||.|...|..+.+.+|++++|.|.+.|.|.+.|.|++++..+. ...++.+....+.   .++|+|.+++. +|+|.|
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~~d~G~Y   80 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG---ISILRIEPVRAGRDDAPY   80 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTT---EEEEEESSCCTTTTCSEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCC---eEEEEEEecCCCCcCceE
Confidence            478999999999999999999999999999999999999999986 4455555443221   25699999999 999999


Q ss_pred             EEEEEcCCee-EEEEeeEEEeCCCCC---CCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc--eEEE
Q psy2775          88 TVVAKNREGE-AKMDIPVKVNTGKPE---KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR--QITS  161 (785)
Q Consensus        88 ~C~a~~~~~~-~~~~~~v~v~~~~~~---~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~--~~~~  161 (785)
                      +|.|.|..+. ....+.|.|......   .|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+...  ....
T Consensus        81 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~  160 (212)
T 2yd1_A           81 ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL  160 (212)
T ss_dssp             EEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE
T ss_pred             EEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc
Confidence            9999999887 677788888753222   267777777888999999999999999999999999999998653  2222


Q ss_pred             eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecC
Q psy2775         162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPY  203 (785)
Q Consensus       162 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~  203 (785)
                      ..  .+|.|.++..+|+|.|+|.|.|..|...+. +.|.|...
T Consensus       161 ~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          161 KD--GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             ET--TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             cC--CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence            22  279999999999999999999999988765 88988754

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.93  E-value=5.7e-25  Score=209.38  Aligned_cols=198  Identities=22%  Similarity=0.309  Sum_probs=145.8

Q ss_pred             CcccccCCCeEEecCCcEEEEEEEeC--CCceEEEEECCEEcccCCCEEEEEeC--cEEEEEEccCCCCCcEEEEEEEee
Q psy2775         416 PEISVPLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENVTLSIDG--KKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       416 ~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      |.+..+. +..+.+|+.+.|.|.+..  |.|.|+|+|||.++..+.++.+..++  ....|.|.+++.+|+|.|+|.|.|
T Consensus         4 p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A            4 PFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             --CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             CeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            4444433 567889999999999964  78899999999999888888877765  567899999999999999999999


Q ss_pred             cCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeee
Q psy2775         492 TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK  571 (785)
Q Consensus       492 ~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  571 (785)
                       |.......+.+.................                               ......+|.|...+ ...+.
T Consensus        83 -g~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~P~~~~~~-~~~v~  129 (207)
T 3rbs_A           83 -GKATNHSTVVLVGDVFKKLQKEAEFQRQ-------------------------------EWIRKQGPHFVEYL-SWEVT  129 (207)
T ss_dssp             -TTEEEEEEEEECTHHHHHHHHHHHHHHH-------------------------------HHHHHTSSEEEEEE-EEEEE
T ss_pred             -CCeEEEEEEEEEccchhhhccccccccc-------------------------------ccccCCCCceEecC-CcEEc
Confidence             4444444443322111000000000000                               00000137777766 47899


Q ss_pred             ecCeEEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         572 EKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|+.++|.|.+.|. |.|.|+|+|||.++..+.++  ....+..+|.|.++.. +|+|.|+|.|.|..|.+.+++.|.++
T Consensus       130 ~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          130 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEFSK-KDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             TTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTCCG-GGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCCCc-ccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            99999999999999 99999999999999776543  3345567899999999 99999999999999999998888653

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.93  E-value=2.3e-24  Score=207.36  Aligned_cols=191  Identities=23%  Similarity=0.363  Sum_probs=154.4

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEccc-CCCCCeEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSI-KKREEGVY   87 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y   87 (785)
                      ...||.|...|..+.+.+|+++.|.|.+.|.|.+.|.|++++..+.............   ..+.|.|.++ +.+|+|.|
T Consensus         3 ~~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~~d~G~Y   79 (212)
T 2yd6_A            3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG---SGSVLRIQPLRTPRDEAIY   79 (212)
T ss_dssp             -CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGG---TEEEEEECSCCTTTTCEEE
T ss_pred             CCCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCC---CceEEEEeccCCCCCCeEE
Confidence            3578999999999999999999999999999999999999999887654333332221   1256999999 59999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCC---CCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc------e
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGK---PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR------Q  158 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~---~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~------~  158 (785)
                      +|.|.|..+.....+.|.|....   +..|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+...      .
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~  159 (212)
T 2yd6_A           80 ECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK  159 (212)
T ss_dssp             EEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEE
T ss_pred             EEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEE
Confidence            99999999988888888886421   23467777777788899999999999999999999999999988653      1


Q ss_pred             EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeec
Q psy2775         159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDP  202 (785)
Q Consensus       159 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~  202 (785)
                      .........|.|.++..+|+|.|+|.|.|..|...+. +.|.|..
T Consensus       160 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence            2223456899999999999999999999999987654 6777763

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.93  E-value=1.4e-24  Score=206.34  Aligned_cols=189  Identities=24%  Similarity=0.379  Sum_probs=156.9

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccC-CCEEEEE-eCcEEEEEEccCCCCCcEEEEEEEe
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFS-ENVTLSI-DGKKQKLIIFSAGLEDAGEYSCRVG  490 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~  490 (785)
                      .||.+...+....+.+|+.++|.|.+.+ +.+.+.|++++..+... .++.+.. .+....|.|.+++.+|+|.|+|.|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            4677878888899999999999999988 67889999999988654 3455443 4556799999999999999999999


Q ss_pred             ec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeee
Q psy2775         491 DT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT  569 (785)
Q Consensus       491 n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~  569 (785)
                      |. |.....+.|.|..++...                                               .|.+...+....
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~-----------------------------------------------~~~~~~~~~~~~  115 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIH-----------------------------------------------LPKTLEGMGAVH  115 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEEC-----------------------------------------------CSSCBTTBEEEE
T ss_pred             ECCCceeEEEEEEEcCCCcCC-----------------------------------------------CCccccccCeEE
Confidence            97 777778888887654210                                               022222334567


Q ss_pred             eeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEcc-CCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775         570 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE-ADSETDAGDYKVVATNELGSATHGARVT  648 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  648 (785)
                      +.+|+.++|.|.+.|+|.|.+.|+|++..+..+.++.+...+...+|.|.+ +.. +|+|.|+|.|.|..|....++.|.
T Consensus       116 ~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~a~N~~g~~~~~~~l~  194 (197)
T 2j8h_A          116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQKTVELD  194 (197)
T ss_dssp             EETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCG-GGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCc-ccCEeEEEEEEeCCCcEeEEEEEE
Confidence            889999999999999999999999999999888787777777888999999 999 999999999999999998888888


Q ss_pred             EE
Q psy2775         649 VD  650 (785)
Q Consensus       649 V~  650 (785)
                      |.
T Consensus       195 V~  196 (197)
T 2j8h_A          195 VA  196 (197)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=205.68  Aligned_cols=189  Identities=25%  Similarity=0.368  Sum_probs=159.5

Q ss_pred             ecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         413 ELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       413 ~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      ..+|.+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....++.+..++....|.|.+++.+|+|.|+|.|.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            34677777788889999999999999987 67789999999999888888888888888999999999999999999999


Q ss_pred             c-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeee
Q psy2775         492 T-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTV  570 (785)
Q Consensus       492 ~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v  570 (785)
                      . |.......|.|..++......                                                 .......+
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~-------------------------------------------------~~~~~~~~  115 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPGY-------------------------------------------------PLKEKYYG  115 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTTS-------------------------------------------------CCCSEEEE
T ss_pred             CCCceeEEEEEEEEcCCCCCCCc-------------------------------------------------cCCcceee
Confidence            7 777788888887664211100                                                 00124467


Q ss_pred             eecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         571 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .+|+.++|.|.+.|+|.|.+.|++++..+..+.+..+...+....|.|.++...+|+|.|+|.|.|..|....++.|.|.
T Consensus       116 ~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             ETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            88999999999999999999999999999888777777777778999999983179999999999999999888888875

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.93  E-value=7.5e-24  Score=199.93  Aligned_cols=177  Identities=23%  Similarity=0.315  Sum_probs=144.8

Q ss_pred             CCcccccCCCeEEec-CCcEEEEEEEeC-CC--ceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEe
Q psy2775         415 PPEISVPLQDVKVSR-DEKASFEIELTK-GD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG  490 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~-g~~~~l~C~~~~-~~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  490 (785)
                      ||.+..+ ....+.+ |+.++|.|.+.+ +.  +.+.|++++..+.......     ....|.|.+++.+|+|.|+|.|.
T Consensus         3 ~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            3 EPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEE
Confidence            5556553 4455666 999999999987 44  6799999999886554322     34689999999999999999999


Q ss_pred             ecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeee
Q psy2775         491 DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTV  570 (785)
Q Consensus       491 n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v  570 (785)
                      |.+....++.|.|..+                                                    |.+...+....+
T Consensus        77 n~~~~~~~~~l~V~~~----------------------------------------------------p~~~~~~~~~~~  104 (190)
T 2wv3_A           77 FVSAPKANATIEVKAA----------------------------------------------------PDITGHKRSENK  104 (190)
T ss_dssp             ETTEEEEEEEEEEECC----------------------------------------------------CEEEEECSEEEE
T ss_pred             eCCcccccEEEEEecC----------------------------------------------------CcccccCCccee
Confidence            9866667788888765                                                    445555556789


Q ss_pred             eecCeEEEEEEEecCCCCceEEEe--CCEEec---CCCCeeEEeeCCeEEEEEccCC-CCCCceeEEEEEEcCCcceEEE
Q psy2775         571 KEKGTIRLMAKVKASPAPSIVWFR--NNKPLL---SSPKKREIFDGENIILELKEAD-SETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~p~v~W~~--~~~~i~---~~~~~~~~~~~~~~~L~i~~~~-~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      .+|+.++|.|.+.|+|.|.+.|++  ++..+.   .+.++.+...+...+|.|.++. . +|+|.|+|.|.|..|....+
T Consensus       105 ~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~a~N~~g~~~~~  183 (190)
T 2wv3_A          105 NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT-EDPGEYECNATNSIGSASVS  183 (190)
T ss_dssp             ETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTT-TSCEEEEEEEECSSCEEEEE
T ss_pred             eCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEecccc-CCCEEEEEEEEecCCcceeE
Confidence            999999999999999999999999  788764   4455666666677899999999 8 99999999999999999999


Q ss_pred             EEEEEE
Q psy2775         645 ARVTVD  650 (785)
Q Consensus       645 ~~l~V~  650 (785)
                      +.|.|+
T Consensus       184 ~~l~V~  189 (190)
T 2wv3_A          184 TVLRVR  189 (190)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999886

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=207.11  Aligned_cols=186  Identities=19%  Similarity=0.276  Sum_probs=142.4

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      +++|.|..+. .+.+.+|+.+.|.|.+. +.|.+.|.|++|+..+..+.++.+..+...  ...+|.|.+++.+|+|.|+
T Consensus         1 ~~~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~--g~~~L~I~~v~~~D~G~Y~   77 (207)
T 3rbs_A            1 GIDPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT--GIIEMFMEKLQDEDEGTYT   77 (207)
T ss_dssp             -----CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTT--CEEEEEESCCCGGGCEEEE
T ss_pred             CCCCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCC--CEEEEEECCCChhhCEEEE
Confidence            4789998866 68999999999999985 469999999999999988877766654321  2346999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEeCC-----------------CCCCCceecCCCceEeccCCcEEEEEEEecc-CCCeEEEeEC
Q psy2775          89 VVAKNREGEAKMDIPVKVNTG-----------------KPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSPKVEWYKD  150 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~~-----------------~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~~v~W~~~  150 (785)
                      |.|.|..  ......+.+...                 ...+|.+..++ ...+.+|+.+.|.|.+.|. |.+.|+|+||
T Consensus        78 C~a~Ng~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~  154 (207)
T 3rbs_A           78 FQLQDGK--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD  154 (207)
T ss_dssp             EEEEETT--EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEET
T ss_pred             EEEECCC--eEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEEC
Confidence            9999943  333333322100                 00256666555 4788899999999999998 8999999999


Q ss_pred             CEEcccce-EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         151 GKLIKDRQ-ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       151 g~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      |.++.... .....+..+|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus       155 g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          155 EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             TEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            99986542 2233445689999999999999999999999999998888763

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.93  E-value=3.9e-24  Score=203.29  Aligned_cols=185  Identities=23%  Similarity=0.402  Sum_probs=152.5

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..||.|...|..+.+.+|++++|.|.+.+.|.+.+.|++++..+... .++.+....+.   ...|+|.+++.+|+|.|+
T Consensus         2 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~   78 (197)
T 2j8h_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG---YHQLIIASVTDDDATVYQ   78 (197)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTT---EEEEEECSCCGGGCSEEE
T ss_pred             CCCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCC---EEEEEECcCCHHhCEEEE
Confidence            36899999999999999999999999999999999999999988654 34444432221   246999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEeCCCCCCCcee-----cCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEE
Q psy2775          89 VVAKNREGEAKMDIPVKVNTGKPEKPSIL-----EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QIT  160 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~~~~~~p~i~-----~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~  160 (785)
                      |.|.|..+.....+.|.|..    +|.+.     ..+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+...   ...
T Consensus        79 C~~~n~~g~~~~~~~l~V~~----~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~  154 (197)
T 2j8h_A           79 VRATNQGGSVSGTASLEVEV----PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI  154 (197)
T ss_dssp             EEEEETTEEEEEEEEEEEEE----EEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEE
T ss_pred             EEEEECCCceeEEEEEEEcC----CCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEE
Confidence            99999999888888888763    33332     2234567889999999999999999999999999988643   233


Q ss_pred             EeCCEEEEEEcc-cCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         161 SEKNTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       161 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      ......+|.|.+ +..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       155 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             ECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            445677999999 99999999999999999999888888885

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.93  E-value=1.1e-25  Score=234.31  Aligned_cols=283  Identities=14%  Similarity=0.156  Sum_probs=170.7

Q ss_pred             CCCeEEecCCcEEEEEEEeCC---CceEEEEEC--CEEcc-----------------cCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTKG---DALVKWYKD--GKEIA-----------------FSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +....+.+|++++|.|.+.+.   .+.+.|+|+  +..+.                 ...++.+..+  +....|+|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            345678899999999999873   568999996  33221                 1356666654  35678999999


Q ss_pred             CCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         478 GLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      +.+|+|.|+|.|.|. +.....+.|.|...+.                                                
T Consensus        87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~------------------------------------------------  118 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSAST------------------------------------------------  118 (344)
T ss_dssp             CGGGCEEEEEEETTTTCEECCCEEEEECSSCC------------------------------------------------
T ss_pred             CcccCEEEEEEEecCcceecCcEEEEEecCCC------------------------------------------------
Confidence            999999999999995 4444567788874210                                                


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCeeEEeeCC----eEEEEEccCCCCCCceeE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAGDY  630 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y  630 (785)
                      .+|.+........+.+|+.++|.|.+.|. |. |.|+|+|+|..+...........++    ...|.|.++.. +| |.|
T Consensus       119 ~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-G~Y  196 (344)
T 1za6_B          119 KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GT-QTY  196 (344)
T ss_dssp             BCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHH-HH-BCE
T ss_pred             CCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHc-CC-CcE
Confidence            01333322223356789999999999997 65 6999999997642110000111111    24799999887 77 999


Q ss_pred             EEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCC
Q psy2775         631 KVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGE  710 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~  710 (785)
                      +|.|.|..|.......+.+.+..-. .....+.++                ..+........+|.+....+... ...|+
T Consensus       197 ~C~a~n~~~~~~~~~~~~~~v~~~~-~~~~~~~~~----------------~~l~~~~~~~~~P~v~~~~~~~~-~~~~~  258 (344)
T 1za6_B          197 ICNVNHKPSNTKVDKKVEPKSCDKT-HTCPPCGGG----------------SSGGGSGGQPREPQVYTLPPSRD-ELTKN  258 (344)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC-------------------------------------CCBCCEEEEECCCGG-GGGSS
T ss_pred             EEEEEeCCCCccceEeecccccccc-cccCCCCCC----------------ccccccCCCCcCCEEEEeCCChH-hccCC
Confidence            9999999987655444432110000 000000000                00000001224555443222222 22466


Q ss_pred             eEEEEEEEecC-C-CCceEEeECCEEeeecccccc--chh----hhcccccceeeeeeceEEEEEEeccc
Q psy2775         711 DLKIEVRFKAL-P-PPKAEWTVNGTVIVPSKRVKG--KAE----FIKKLDDLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       711 ~~~l~C~~~g~-P-~p~i~W~~~~~~~~~~~~~~~--~~~----~~~~l~~~~v~~~~~~~~~c~~~~~~  772 (785)
                      .++|.|.+.|+ | .+.|+|++||..+........  ..+    ....|.+......|.|.|+|.+.++.
T Consensus       259 ~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~  328 (344)
T 1za6_B          259 QVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  328 (344)
T ss_dssp             SEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTT
T ss_pred             cEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCC
Confidence            69999999996 4 358999999998865443222  111    11223333333345899999999744

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.93  E-value=5.8e-24  Score=202.16  Aligned_cols=187  Identities=24%  Similarity=0.441  Sum_probs=157.6

Q ss_pred             ccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775           8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus         8 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +.+.||.|...+..+.+.+|++++|.|.+.+.|.+.+.|++++..+....+..+...+..    .+|+|.+++.+|+|.|
T Consensus         3 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y   78 (197)
T 3lcy_A            3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT----HTLTVMTEEQEDEGVY   78 (197)
T ss_dssp             CCCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSE----EEEEEECCSGGGCEEE
T ss_pred             ccCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCE----EEEEEecCCccCCEEE
Confidence            567899999999999999999999999999999999999999999988888777665532    4699999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCCCCCCceec---CCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEEE
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGKPEKPSILE---PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITS  161 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~---~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~  161 (785)
                      +|.+.|..+.......|.|..    +|.+..   ......+..|+.+.|.|.+.|.|.+.+.|+++|..+...   ....
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~  154 (197)
T 3lcy_A           79 TCIATNEVGEVETSSKLLLQA----TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN  154 (197)
T ss_dssp             EEEEECSSCEEEEEEEEEEEE----EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE
T ss_pred             EEEEECCCCceeEEEEEEEEc----CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEE
Confidence            999999998888888887763    333332   224567789999999999999999999999999998654   2333


Q ss_pred             eCCEEEEEEcccCC-CCcEEEEEEEEcCCeeEEEEEEEEeec
Q psy2775         162 EKNTHTLTLIQCST-KDKGRYSVKVTNKEGTVESAANLNVDP  202 (785)
Q Consensus       162 ~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~  202 (785)
                      .....+|.|.++.. +|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       155 ~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          155 TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             CSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            44457899999984 899999999999999999889888863

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.92  E-value=1.1e-23  Score=202.73  Aligned_cols=192  Identities=23%  Similarity=0.346  Sum_probs=151.8

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEe-CcEEEEEEccC-CCCCcEEEEEEEe
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSID-GKKQKLIIFSA-GLEDAGEYSCRVG  490 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~-~~~d~G~Y~C~a~  490 (785)
                      .||.+...+.+..+.+|+.+.|.|.+.+ +.+.+.|++++..+........... +....|.|.++ +.+|+|.|+|.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~   84 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS   84 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence            4677777788889999999999999997 7789999999999865543333332 35678999999 5999999999999


Q ss_pred             ec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeee
Q psy2775         491 DT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT  569 (785)
Q Consensus       491 n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~  569 (785)
                      |. |....++.|.|..++..     +                                        ...|.+...+....
T Consensus        85 n~~g~~~~~~~l~V~~~~~~-----~----------------------------------------~~~p~~~~~~~~~~  119 (212)
T 2yd6_A           85 NNVGEISVSTRLTVLREDQI-----P----------------------------------------RGFPTIDMGPQLKV  119 (212)
T ss_dssp             ETTEEEEEEEEEEEECGGGC-----C----------------------------------------TTCCEEEECCCCEE
T ss_pred             cCCCcEEEEEEEEEeccCcc-----C----------------------------------------CCcceeecCCccee
Confidence            97 77777888888765310     0                                        01255555556678


Q ss_pred             eeecCeEEEEEEEecCCCCceEEEeCCEEecCC---CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE-E
Q psy2775         570 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS---PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG-A  645 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~---~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~  645 (785)
                      +.+|+.++|.|.+.|+|.|.|.|+|+|..+...   .+......+....|.|.++.. +|+|.|+|.|.|..|...++ +
T Consensus       120 ~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G~~~s~~a  198 (212)
T 2yd6_A          120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAGTRYSAPA  198 (212)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEECCCE
T ss_pred             EecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCc-ccCEEEEEEEECCCCccccccc
Confidence            899999999999999999999999999998764   344455556678999999999 99999999999999997654 7


Q ss_pred             EEEEEe
Q psy2775         646 RVTVDV  651 (785)
Q Consensus       646 ~l~V~~  651 (785)
                      .|.|.+
T Consensus       199 ~l~~~~  204 (212)
T 2yd6_A          199 NLYVRG  204 (212)
T ss_dssp             EEEEEC
T ss_pred             cEEEEe
Confidence            777763

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=1e-23  Score=202.94  Aligned_cols=189  Identities=24%  Similarity=0.377  Sum_probs=153.7

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcc-cCCCEEEEEe-CcEEEEEEccCCC-CCcEEEEEEE
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIA-FSENVTLSID-GKKQKLIIFSAGL-EDAGEYSCRV  489 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~-~~~~~~~~~~-~~~~~L~i~~~~~-~d~G~Y~C~a  489 (785)
                      .||.+...+.+..+.+|+.++|.|.+.+ +.+.+.|++++..+. ...++.+... +....|.|.++.. +|+|.|+|.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            4788888888999999999999999997 677999999999986 4456665543 4558999999999 9999999999


Q ss_pred             eec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeee
Q psy2775         490 GDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEE  567 (785)
Q Consensus       490 ~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~  567 (785)
                      .|. |. ....+.|.|..++..                                             +..+|.+...+..
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~---------------------------------------------~~~~p~~~~~~~~  119 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKT---------------------------------------------PAGFPVITQGPGT  119 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCS---------------------------------------------CTTCCEEEECCCC
T ss_pred             EeCCCCeEEeeEEEEEecccCC---------------------------------------------CCCCCeeEeCCCc
Confidence            997 66 677788888865311                                             0012566666667


Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE-EE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG-AR  646 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~~  646 (785)
                      ..+.+|+.++|.|.+.|+|.|.|.|++++..+.......... ++  +|.|.++.. +|+|.|+|.|.|..|...+. +.
T Consensus       120 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-~~--~L~i~~v~~-~d~G~Y~C~a~N~~G~~~s~~~~  195 (212)
T 2yd1_A          120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK-DG--FLQIENSRE-EDQGKYECVAENSMGTEHSKATN  195 (212)
T ss_dssp             EEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE-TT--EEEECSCCG-GGCEEEEEEEEETTEEEECCCEE
T ss_pred             eEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc-CC--eEEEccCCh-hhCEEEEEEeecCCCceeEEEEE
Confidence            788999999999999999999999999999987644333322 22  799999999 99999999999999998875 78


Q ss_pred             EEEEe
Q psy2775         647 VTVDV  651 (785)
Q Consensus       647 l~V~~  651 (785)
                      |.|+.
T Consensus       196 l~V~~  200 (212)
T 2yd1_A          196 LYVKV  200 (212)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88873

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.92  E-value=1e-23  Score=199.95  Aligned_cols=181  Identities=19%  Similarity=0.285  Sum_probs=150.1

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEccCCC--CEEEeecCC-ccce--EEEEEEcccCCCCCe
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETD--EVVFSDQSD-MHSY--VSIVTIKSIKKREEG   85 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~-~~~~--~~~L~i~~~~~~D~G   85 (785)
                      ||+|...|..+.+.+|++++|.|.+. |.|.+.+.|++++..+....  +..+....+ ...+  .++|+|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            79999999999999999999999998 99999999999999987763  333333332 1122  467999999999999


Q ss_pred             EEEEEEEcCCeeEEEE-eeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCC-eEEEeECCEEcccceEEEeC
Q psy2775          86 VYTVVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEK  163 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~-~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~  163 (785)
                      .|+|.|.+..+..... +.|.|.    .+|.+...+....+.+|+.+.|.|.+.|.|.+ .+.|+++|..+......  .
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--~  155 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLE----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--G  155 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC----CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--S
T ss_pred             EEEEEEEeCCCceecccEEEEEe----cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--C
Confidence            9999999988765443 677776    56888877778899999999999999999999 99999999987654221  3


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcCCeeEE-EEEEEEe
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANLNV  200 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  200 (785)
                      ...+|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       156 ~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          156 PQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            56689999887  89999999999999886 5788888

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.92  E-value=8e-25  Score=206.91  Aligned_cols=167  Identities=16%  Similarity=0.182  Sum_probs=128.5

Q ss_pred             CeEEecCCcEEEEEEEe---C-CCceEEEEECCEEcc-----------------cCCCEEEEEeCcEEEEEEccCCCCCc
Q psy2775         424 DVKVSRDEKASFEIELT---K-GDALVKWYKDGKEIA-----------------FSENVTLSIDGKKQKLIIFSAGLEDA  482 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~---~-~~~~i~W~~~~~~~~-----------------~~~~~~~~~~~~~~~L~i~~~~~~d~  482 (785)
                      .+.+..|++++|.|.+.   + |.+.|+|+|+|..+.                 ....+.+..+.+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            46788999999999653   3 678999999764321                 12345556667778999999999999


Q ss_pred             EEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeE
Q psy2775         483 GEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF  561 (785)
Q Consensus       483 G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~  561 (785)
                      |.|+|.|.|. |.....+.|.|..|                                                    |.+
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p----------------------------------------------------~~~  109 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKP----------------------------------------------------LTL  109 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEE----------------------------------------------------EEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCC----------------------------------------------------cee
Confidence            9999999997 77788888888764                                                    555


Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecC----CCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS----SPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ...+....+.+|++++|.|.+.|+|.|.|+|++++..+..    +.+..+..++....|.|.++.. +|+|.|+|.|+|.
T Consensus       110 ~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~-~D~G~YtC~A~N~  188 (203)
T 4fa8_A          110 SVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPK-PWHLPVTCVGKND  188 (203)
T ss_dssp             EEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEEEEECS-SCCCCEEEEEESS
T ss_pred             eecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCH-HHCEEEEEEEEcC
Confidence            6666678899999999999999999999999987755432    2333333444455677889998 9999999999999


Q ss_pred             CcceEE
Q psy2775         638 LGSATH  643 (785)
Q Consensus       638 ~g~~~~  643 (785)
                      +|++..
T Consensus       189 ~G~a~~  194 (203)
T 4fa8_A          189 KEEAHG  194 (203)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            998875

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.92  E-value=1.8e-23  Score=195.78  Aligned_cols=177  Identities=16%  Similarity=0.324  Sum_probs=145.3

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      +|.|...|..+.+.+|++++|.|.+.+.|.+.+.|++++..+....+..+....+  ...+.|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~   79 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ--HWIGFLSLKSVERSDAGRYWCQV   79 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT--EEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCC--CceEEEEEeecCcccCeEEEEEE
Confidence            6889999999999999999999999998999999999999988776655554442  23467999999999999999999


Q ss_pred             EcCCee-EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCC-eEEEeECCEEcccceEEEeCCEEEEE
Q psy2775          92 KNREGE-AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLT  169 (785)
Q Consensus        92 ~~~~~~-~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~L~  169 (785)
                      .+..+. ....+.|.|.    .+|.+...+....+.+|+.+.|.|.+.|.|.+ .+.|+++|..+.....    ...+|.
T Consensus        80 ~~~~~~~~~~~~~l~V~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~----~~~~L~  151 (182)
T 1rhf_A           80 EDGGETEISQPVWLTVE----GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----SPSVLN  151 (182)
T ss_dssp             SSCTTCEECCCEEEEEE----CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----SSEEEE
T ss_pred             EcCCCcEEEEEEEEEEe----cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC----CceEEE
Confidence            998664 4456778887    57888887788889999999999999999998 9999999998865432    456899


Q ss_pred             EcccCCCCcEEEEEEEEcCCeeEEE-EEEEEe
Q psy2775         170 LIQCSTKDKGRYSVKVTNKEGTVES-AANLNV  200 (785)
Q Consensus       170 i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V  200 (785)
                      |.++  +|+|.|+|.|.|..|...+ .+.|.|
T Consensus       152 i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          152 VTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             Eecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            9987  5899999999999998764 677776

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.92  E-value=6.2e-23  Score=193.63  Aligned_cols=176  Identities=23%  Similarity=0.320  Sum_probs=146.4

Q ss_pred             CCCeeeecCCceEecC-CCeEEEEEEEEecCC--CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          11 IPPTFSKKTKPVYAEE-NSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~-G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .||.|... ....+.+ |++++|.|.+.+.|.  +.+.|++++..+.......         ....|+|.+++.+|+|.|
T Consensus         2 ~~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y   71 (190)
T 2wv3_A            2 NEPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---------SNMEYRINKPRAEDSGEY   71 (190)
T ss_dssp             -CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---------SEEEEEESSCCGGGCEEE
T ss_pred             CCCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---------ccEEEEEecCCcccCEEE
Confidence            47888874 4566666 999999999998887  8899999999886653321         225699999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeE--CCEEccc----c--eE
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK--DGKLIKD----R--QI  159 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~--~g~~~~~----~--~~  159 (785)
                      +|.|.|. +.....+.|.|.    .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++  +|..+..    .  .+
T Consensus        72 ~C~~~n~-~~~~~~~~l~V~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~  146 (190)
T 2wv3_A           72 HCVYHFV-SAPKANATIEVK----AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFI  146 (190)
T ss_dssp             EEEEEET-TEEEEEEEEEEE----CCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEE
T ss_pred             EEEEEeC-CcccccEEEEEe----cCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEE
Confidence            9999998 888888888887    57888877778889999999999999999999999999  7877631    1  23


Q ss_pred             EEeCCEEEEEEcccC-CCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         160 TSEKNTHTLTLIQCS-TKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       160 ~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      .......+|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus       147 ~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          147 INKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            334455689999999 699999999999999999988888875

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.92  E-value=1.1e-24  Score=224.72  Aligned_cols=250  Identities=15%  Similarity=0.182  Sum_probs=162.7

Q ss_pred             ccEEEEEEEcC--C-CCeEEEEECCEEcCCCCcE--EEEEcCc---EEEEEEcCCCCCCceEEEEEEeccceEEEEEEEe
Q psy2775         342 ENAVLEVEVTS--D-KADVKWFKDGQEIKTSKKV--TIEKKGT---IRKLLIRNISVHDEGEYTCSLPDQETSAELNVVE  413 (785)
Q Consensus       342 ~~~~l~C~~~~--~-~~~v~W~~~~~~l~~~~~~--~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~v~~  413 (785)
                      +.+.|.|.+.+  | .+.++|+++|..+......  ....++.   .+.|.|.+...+|+|.|+|.|.|..+.....+..
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            69999999987  2 3689999999998754321  1222332   2357788877789999999999987766554421


Q ss_pred             -------cCCcccccCCCeEEecCCcEEEEEEEeC--CCc---eEEEEECC-EEcccCCCEEEEE-eC---cEEEEEEcc
Q psy2775         414 -------LPPEISVPLQDVKVSRDEKASFEIELTK--GDA---LVKWYKDG-KEIAFSENVTLSI-DG---KKQKLIIFS  476 (785)
Q Consensus       414 -------~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~---~i~W~~~~-~~~~~~~~~~~~~-~~---~~~~L~i~~  476 (785)
                             .|+.+..++....+.+|+.++|.|.+.+  |.+   .|.|++++ ..+.......... ++   ..+.|+|.+
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~  184 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGT  184 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCH
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECH
Confidence                   1222233344445678999999999987  344   89999975 4443222211101 11   235799999


Q ss_pred             CCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         477 AGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      ++.+|+|.|+|.|.|. +..  ...+.|.....  ...                                          
T Consensus       185 ~~~~D~G~Y~C~a~n~~~~~--~~~~~v~~~~~--~~~------------------------------------------  218 (323)
T 2wqr_A          185 RDWIEGETYQCRVTHPHLPR--ALMRSTTKTSG--PRA------------------------------------------  218 (323)
T ss_dssp             HHHHTTCCEEEEEECTTSSS--CEEEEECCCCS--CCB------------------------------------------
T ss_pred             HHccCCCCEEEEEECCCCCC--CeeeEEEccCC--CCC------------------------------------------
Confidence            9999999999999996 332  23444432100  000                                          


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe---eEEeeCC----eEEEEEccCCCCCC
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK---REIFDGE----NIILELKEADSETD  626 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~---~~~~~~~----~~~L~i~~~~~~~d  626 (785)
                        +|.+...........|+.++|.|.+.|. |++ .|+|+|||..+..+...   .....++    .++|.|..+.. +|
T Consensus       219 --~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d  295 (323)
T 2wqr_A          219 --APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEW-EQ  295 (323)
T ss_dssp             --CCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHH-HH
T ss_pred             --CCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHc-cC
Confidence              1333322222222339999999999995 544 79999999988643210   0111121    35799999988 99


Q ss_pred             ceeEEEEEEcCCcc
Q psy2775         627 AGDYKVVATNELGS  640 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~  640 (785)
                      +|.|+|.|.|..+.
T Consensus       296 ~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          296 KDEFICRAVHEAAS  309 (323)
T ss_dssp             CCCEEEEEECTTST
T ss_pred             CCEEEEEEEeCCCC
Confidence            99999999999886

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.91  E-value=4.1e-24  Score=202.23  Aligned_cols=183  Identities=24%  Similarity=0.396  Sum_probs=150.9

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..||.|...+..+.+.+|++++|.|.+.|.|.+.+.|++++..+.. ..++.+...+      .+|+|.+++.+|+|.|+
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~   78 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG------QLLTILSVEDSDDGIYC   78 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG------TEEEESSCCGGGCEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc------cEEEEcCCCcccCeEEE
Confidence            4578999999999999999999999999999999999999998865 3455544333      24999999999999999


Q ss_pred             EEEEcCCee-EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEE
Q psy2775          89 VVAKNREGE-AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT  167 (785)
Q Consensus        89 C~a~~~~~~-~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  167 (785)
                      |.+.|..+. ......|.|.    .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+............+
T Consensus        79 C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~  154 (192)
T 2iep_A           79 CTANNGVGGAVESCGALQVK----MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS  154 (192)
T ss_dssp             EEEECSSSCCEEEEEEEEEE----EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSC
T ss_pred             EEEEcCCCceeEeEEEEEEE----eCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCc
Confidence            999998776 4555667776    46777777778889999999999999999999999999999887653322223347


Q ss_pred             EEEcccCCCCcEEEEEEEEcCCeeEEE-EEEEEeec
Q psy2775         168 LTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDP  202 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~  202 (785)
                      |.|.++..+|+|.|+|.|.|..|...+ .+.|.|..
T Consensus       155 L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          155 LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            999999999999999999999998744 57787763

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.91  E-value=3.1e-23  Score=199.70  Aligned_cols=187  Identities=22%  Similarity=0.363  Sum_probs=145.2

Q ss_pred             cCCcEEEEEEEeC--CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEc
Q psy2775         429 RDEKASFEIELTK--GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEA  505 (785)
Q Consensus       429 ~g~~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~  505 (785)
                      .++.+.|.|.+.+  +.+.+.|+++|..+..+.++.+..++....|.|.+++.+|+|.|+|.|.|. |....++.|.|..
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~   95 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA   95 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHH
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEee
Confidence            5778899999887  478899999999999888999888888889999999999999999999997 6555555555442


Q ss_pred             Ccccccc----cCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEE
Q psy2775         506 PAVEFLT----KLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK  581 (785)
Q Consensus       506 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~  581 (785)
                      .......    ..+...                                   ....++.+...+....+.+|+.++|.|.
T Consensus        96 ~~~~~~~~~~~~~~~~~-----------------------------------~~~~p~~~~~~~~~~~v~~g~~~~l~C~  140 (212)
T 2r15_A           96 YDEAYAEFQRLKQAAIA-----------------------------------EKNRARVLGGLPDVVTIQEGKALNLTCN  140 (212)
T ss_dssp             HHHHHHHHHHHHHHHHH-----------------------------------HHHSCEEEEBCCSEEEEETTCCEEEEEE
T ss_pred             ccchhhhccccCccccc-----------------------------------ccCCCcccccCCCcEEEccCCeEEEEEE
Confidence            1000000    000000                                   0000122333345678999999999999


Q ss_pred             EecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         582 VKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       582 ~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      +.|+|.|.+.|+|++..+..+.++.+... +...+|.|.++.. +|+|.|+|.|.|..|....++.|.|.+
T Consensus       141 ~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          141 VWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcch-HHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            99999999999999999988887766665 6678999999999 999999999999999999988888863

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.91  E-value=4.3e-23  Score=195.66  Aligned_cols=175  Identities=22%  Similarity=0.402  Sum_probs=141.4

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEe-C-CCceEEEEECCEEcccCC--CEEEEEeCc-------EEEEEEccCCCCCcE
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELT-K-GDALVKWYKDGKEIAFSE--NVTLSIDGK-------KQKLIIFSAGLEDAG  483 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~-~-~~~~i~W~~~~~~~~~~~--~~~~~~~~~-------~~~L~i~~~~~~d~G  483 (785)
                      +|.+...+.+..+.+|+.++|.|.+. + +.+.+.|++++..+....  +..+.....       ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            56777788899999999999999999 5 678899999999987663  333333322       468999999999999


Q ss_pred             EEEEEEeec-Ccce-eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeE
Q psy2775         484 EYSCRVGDT-GDKE-SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF  561 (785)
Q Consensus       484 ~Y~C~a~n~-g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~  561 (785)
                      .|+|.|.|. |... ..+.|.|..+                                                    |.+
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~----------------------------------------------------p~~  109 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGL----------------------------------------------------PYF  109 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCS----------------------------------------------------CEE
T ss_pred             EEEEEEEeCCCceecccEEEEEecC----------------------------------------------------CeE
Confidence            999999997 4332 3377777665                                                    445


Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ...+....+.+|+.++|.|.+.|+|.| .|.|+|++..+......     ....+|.|.++   .|+|.|+|.|.|..|.
T Consensus       110 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~---~d~G~Y~C~a~N~~g~  181 (195)
T 2c5d_C          110 LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGL---NKTSSFSCEAHNAKGV  181 (195)
T ss_dssp             EECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCC---SSCEEEEEEEEETTEE
T ss_pred             EcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEccc---ccCceEEEEEEcCCCc
Confidence            555556788999999999999999999 99999999988765442     45678999987   4789999999999998


Q ss_pred             eE-EEEEEEE
Q psy2775         641 AT-HGARVTV  649 (785)
Q Consensus       641 ~~-~~~~l~V  649 (785)
                      .. .++.|.|
T Consensus       182 ~~s~~~~l~V  191 (195)
T 2c5d_C          182 TTSRTATITV  191 (195)
T ss_dssp             EECCCEEEEE
T ss_pred             eEEEEEEEEE
Confidence            86 6888887

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.91  E-value=7.9e-23  Score=191.46  Aligned_cols=174  Identities=21%  Similarity=0.338  Sum_probs=139.0

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCc--EEEEEEccCCCCCcEEEEEEEee
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGK--KQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      ++.+...+.+..+.+|+.++|.|.+.+ +.+.+.|++++..+....+..+..++.  ...|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            355666777888999999999999998 678899999999987776665555443  46899999999999999999999


Q ss_pred             c-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeee
Q psy2775         492 T-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT  569 (785)
Q Consensus       492 ~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~  569 (785)
                      . |. ....+.|.|..+                                                    |.+...+....
T Consensus        82 ~~~~~~~~~~~l~V~~~----------------------------------------------------p~~~~~~~~~~  109 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGV----------------------------------------------------PFFTVEPKDLA  109 (182)
T ss_dssp             CTTCEECCCEEEEEECS----------------------------------------------------CEEEECCCCEE
T ss_pred             CCCcEEEEEEEEEEecC----------------------------------------------------CeEEecCcceE
Confidence            7 43 445788888765                                                    44444455678


Q ss_pred             eeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE-EEEE
Q psy2775         570 VKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH-GARV  647 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l  647 (785)
                      +.+|+.++|.|.+.|+|.| .+.|++++..+.....       ...+|.|.++   +|+|.|+|.|.|..|...+ ++.|
T Consensus       110 ~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~---~d~G~Y~C~a~N~~g~~~s~~~~l  179 (182)
T 1rhf_A          110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV---TQSTMFSCEAHNLKGLASSRTATV  179 (182)
T ss_dssp             ECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC---SSCEEEEEEEEETTEEEECCCEEE
T ss_pred             ecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc---ccCeEEEEEEECCCCCcccceEEE
Confidence            8999999999999999999 9999999998854321       5677999987   6899999999999998864 7777


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|+
T Consensus       180 ~Vk  182 (182)
T 1rhf_A          180 HLQ  182 (182)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            763

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.90  E-value=7.5e-23  Score=193.32  Aligned_cols=182  Identities=16%  Similarity=0.232  Sum_probs=145.4

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecC-CCeeEEEE-CCEEcc-CCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYY-NGEPLQ-ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .|+.|...|..+.+.+|++++|.|.+.+.+ .+.+.|++ ++..+. ...++.+.....   ..+.|+|.+++.+|+|.|
T Consensus         1 rp~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y   77 (191)
T 1epf_A            1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD---DSSTLTIYNANIDDAGIY   77 (191)
T ss_dssp             --CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEET---TEEEEEECSCCGGGCEEE
T ss_pred             CceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCC---CceEEEEccCCcccCEEE
Confidence            378899999999999999999999998876 78999999 887776 344554433211   225799999999999999


Q ss_pred             EEEEEcCC-eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc---eEEEeC
Q psy2775          88 TVVAKNRE-GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK  163 (785)
Q Consensus        88 ~C~a~~~~-~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~  163 (785)
                      +|.+.+.. +.....+.|.|.    .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+...   ......
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~  153 (191)
T 1epf_A           78 KCVVTAEDGTQSEATVNVKIF----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS  153 (191)
T ss_dssp             EEEEEETTTEEEEEEEEEEEE----CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT
T ss_pred             EEEEEcCCCcceEEEEEEEee----cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEec
Confidence            99999987 566677778876    5778877778888999999999999999999999999999988643   222222


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                       ..+|.|.++..+|+|.|+|.|.|..+.......+.|
T Consensus       154 -~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          154 -NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             -TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             -CCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence             237999999999999999999998865555544444

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.90  E-value=1.1e-22  Score=192.13  Aligned_cols=182  Identities=19%  Similarity=0.351  Sum_probs=140.8

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-C-CceEEEEE-CCEEcc-cCCCEEEEE-eCcEEEEEEccCCCCCcEEEEEEE
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-G-DALVKWYK-DGKEIA-FSENVTLSI-DGKKQKLIIFSAGLEDAGEYSCRV  489 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~-~~~i~W~~-~~~~~~-~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a  489 (785)
                      |+.+...+.+..+.+|+.++|.|.+.+ + .+.+.|++ ++..+. ...++.+.. +.....|.|.+++.+|+|.|+|.|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            455666778888999999999999998 4 67899999 888776 344555543 356789999999999999999999


Q ss_pred             eec-C-cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeee
Q psy2775         490 GDT-G-DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEE  567 (785)
Q Consensus       490 ~n~-g-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~  567 (785)
                      .|. + .....+.|.|..+                                                    |.+...+..
T Consensus        82 ~~~~~~~~~~~~~l~v~~~----------------------------------------------------p~~~~~~~~  109 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQK----------------------------------------------------LMFKNAPTP  109 (191)
T ss_dssp             EETTTEEEEEEEEEEEECC----------------------------------------------------SEEEECCSS
T ss_pred             EcCCCcceEEEEEEEeecC----------------------------------------------------ceEecCCCc
Confidence            997 2 3344566666544                                                    444444556


Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      ..+.+|+.++|.|.+.|+|.|.+.|+|++..+............ ..+|.|.++.. +|+|.|+|.|.|..|.......+
T Consensus       110 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~~~i  187 (191)
T 1epf_A          110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-NNYLQIRGIKK-TDEGTYRCEGRILARGEINFKDI  187 (191)
T ss_dssp             EECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT-TSCEEETTCCG-GGCEEEEEEEEEGGGTEEEEEEE
T ss_pred             EeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEec-CCeEEECCCCh-hhCEEEEEEEEEecceeEEEEEE
Confidence            77889999999999999999999999999998643322222222 22599999999 99999999999999877777776


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|.
T Consensus       188 ~v~  190 (191)
T 1epf_A          188 QVI  190 (191)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            664

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.90  E-value=7.9e-24  Score=203.86  Aligned_cols=188  Identities=28%  Similarity=0.458  Sum_probs=146.2

Q ss_pred             ccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCC-----EEEeecCCccceEEEEEEcccCCC
Q psy2775           8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE-----VVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus         8 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      ....||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+.....     ......+.  .....|.|.+++.+
T Consensus         5 ~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~   82 (212)
T 2v9r_A            5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS--LFFLRIVHGRKSRP   82 (212)
T ss_dssp             -CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSC--EEESSCCCCSSCCC
T ss_pred             cccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCc--EEEEEEEecCCCcc
Confidence            456799999999999999999999999999999999999999998754321     12222221  11223566788999


Q ss_pred             CCeEEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccce--
Q psy2775          83 EEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQ--  158 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~--  158 (785)
                      |+|.|+|.|.|..+.. ...+.|.|..   .++.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+....  
T Consensus        83 d~G~Y~C~~~n~~g~~~~~~~~l~V~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~  159 (212)
T 2v9r_A           83 DEGVYVCVARNYLGEAVSHDASLEVAI---LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER  159 (212)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEEECE---ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTT
T ss_pred             cCeEEEEEEECCCCceeecceEEEEEe---ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcce
Confidence            9999999999988765 3455666653   34455556667889999999999998 889999999999999887532  


Q ss_pred             EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeec
Q psy2775         159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDP  202 (785)
Q Consensus       159 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~  202 (785)
                      .....  ..|.|.++..+|+|.|+|.|.|..|...+. +.|.|..
T Consensus       160 ~~~~~--~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          160 ITIRG--GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             EEEET--TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEccC--CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            22222  379999999999999999999999987664 7888874

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.90  E-value=3.1e-23  Score=196.21  Aligned_cols=178  Identities=25%  Similarity=0.403  Sum_probs=143.4

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEccc-CCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAF-SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT  492 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  492 (785)
                      +|.+..++....+.+|+.++|.|.+.+ +.+.+.|++++..+.. ..++.+..++  ..|.|.+++.+|+|.|+|.+.|.
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~   84 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG--QLLTILSVEDSDDGIYCCTANNG   84 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG--TEEEESSCCGGGCEEEEEEEECS
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc--cEEEEcCCCcccCeEEEEEEEcC
Confidence            566777778888999999999999987 7789999999998865 3455554443  37999999999999999999997


Q ss_pred             -Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeee
Q psy2775         493 -GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTV  570 (785)
Q Consensus       493 -g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v  570 (785)
                       |. ......|.|..+                                                    |.+...+....+
T Consensus        85 ~~~~~~~~~~l~v~~~----------------------------------------------------p~~~~~~~~~~~  112 (192)
T 2iep_A           85 VGGAVESCGALQVKMK----------------------------------------------------PKITRPPINVKI  112 (192)
T ss_dssp             SSCCEEEEEEEEEEEE----------------------------------------------------EEEEECCCCEEE
T ss_pred             CCceeEeEEEEEEEeC----------------------------------------------------CccccCCcceEE
Confidence             55 455677777764                                                    444444446678


Q ss_pred             eecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceE-EEEEEEE
Q psy2775         571 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTV  649 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  649 (785)
                      .+|+.++|.|.+.|+|.|.+.|++++..+..+.+.....   ..+|.|.++.. +|+|.|+|.|.|..|... ..+.|.|
T Consensus       113 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~---~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V  188 (192)
T 2iep_A          113 IEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE---SGSLRIHNVQK-EDAGQYRCVAKNSLGTAYSKLVKLEV  188 (192)
T ss_dssp             ETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECT---TSCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEec---CCcEEEecCCh-hhCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            899999999999999999999999999997766543332   23699999999 999999999999999884 4577777


Q ss_pred             E
Q psy2775         650 D  650 (785)
Q Consensus       650 ~  650 (785)
                      +
T Consensus       189 ~  189 (192)
T 2iep_A          189 E  189 (192)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=196.25  Aligned_cols=180  Identities=26%  Similarity=0.460  Sum_probs=140.6

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC--CCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      .+|.|...|.++.+.+|++++|.|.+.+.|.+.+.|++++..+..  ..++.+..++       +|+|.+++.+|+|.|+
T Consensus         1 s~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-------~L~i~~~~~~d~G~Y~   73 (189)
T 2v5t_A            1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-------NLQILNINKSDEGIYR   73 (189)
T ss_dssp             CCCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS-------CEEETTCCGGGCEEEE
T ss_pred             CCceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC-------CEEEeeCCHhHCcEEE
Confidence            379999999999999999999999999999999999999987754  3344333222       3999999999999999


Q ss_pred             EEEEcCCeeE--EEEeeEEEeCCCCCCCceecCCC--ceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce-EEEeC
Q psy2775          89 VVAKNREGEA--KMDIPVKVNTGKPEKPSILEPLH--DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-ITSEK  163 (785)
Q Consensus        89 C~a~~~~~~~--~~~~~v~v~~~~~~~p~i~~~~~--~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~-~~~~~  163 (785)
                      |.+.+..+..  ...+.+.+.    .+|.+.....  ...+..|+.+.|.|.+.|.|.+.+.|+++|..+.... .....
T Consensus        74 C~~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~  149 (189)
T 2v5t_A           74 CEGRVEARGEIDFRDIIVIVN----VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG  149 (189)
T ss_dssp             EEEEETTTTEEEEEEEEEEEE----EEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET
T ss_pred             EEEEEcCCCceEEEEEEEEec----CCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec
Confidence            9999876433  244555554    3555554433  4567889999999999999999999999999887542 33334


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      ...+|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       150 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          150 SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            45579999999999999999999999999988888875

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.90  E-value=1.9e-23  Score=202.01  Aligned_cols=188  Identities=23%  Similarity=0.377  Sum_probs=145.5

Q ss_pred             ccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775           8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus         8 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ....||.|...|..+.+.+|++++|.|.+.|.|.+.|.|++++..+....  ...+...++.  ....|+|.+++.+|+|
T Consensus         5 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~~~~l~i~~v~~~d~G   82 (217)
T 2vr9_A            5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA--LFFYRTMQGKKEQDGG   82 (217)
T ss_dssp             -CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSC--EEESSCCBSSSCBCCE
T ss_pred             cccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCc--eEEEEEeccCCcccCc
Confidence            34679999999999999999999999999999999999999999886542  2222222221  1233578999999999


Q ss_pred             EEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccc------
Q psy2775          86 VYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDR------  157 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~------  157 (785)
                      .|+|.+.|..+... ....|.|..   .+|.+...+....+..|+.+.|.|.+ .|.|.+.+.|+++|..+...      
T Consensus        83 ~Y~C~~~n~~g~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~  159 (217)
T 2vr9_A           83 EYWCVAKNRVGQAVSRHASLQIAV---LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFG  159 (217)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECE---ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---
T ss_pred             eEEEEEecCCCccccccceEEEEE---eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccc
Confidence            99999999888653 345566543   34555566667889999999999999 88999999999999988732      


Q ss_pred             ---eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         158 ---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       158 ---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                         ..... ...+|.|.+++.+|+|.|+|.|.|..|....+..+.+.
T Consensus       160 ~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          160 ASSRVRIV-DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             CCCSEEEE-TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCcEEec-CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence               11111 22379999999999999999999999988877555443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.89  E-value=3.1e-23  Score=195.98  Aligned_cols=167  Identities=13%  Similarity=0.118  Sum_probs=125.3

Q ss_pred             CceEecCCCeEEEEEE---EEecCCCeeEEEECCEEccC-----------------CCCEEEeecCCccceEEEEEEccc
Q psy2775          20 KPVYAEENSEVTLEVR---LVAVPEPDLLWYYNGEPLQE-----------------TDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~---~~g~p~~~i~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      +.+++..|++++|.|.   +.+.|.+.|.|+|++..+..                 ..++.+....    ....|.|.++
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v   76 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA----NTFFLVVTAA   76 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEET----TEEEEEESSC
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcC----CEEEEEEccC
Confidence            3578999999999995   46778999999997643211                 1112222222    1256999999


Q ss_pred             CCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEccc---
Q psy2775          80 KKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---  156 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~---  156 (785)
                      +.+|+|.|+|.|.|..+.....+.|.|.    .||.+...+....+.+|+.+.|.|.+.|.|.|.|+|++++..+..   
T Consensus        77 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~----~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~  152 (203)
T 4fa8_A           77 NISHDGNYLCRMKLGETEVTKQEHLSVV----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTA  152 (203)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE----EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC---------
T ss_pred             CHHHCeEEEEEEEcCCCcEEEEEEEEec----CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCccc
Confidence            9999999999999999999888889887    567777777778889999999999999999999999987654432   


Q ss_pred             --ceEEE--eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE
Q psy2775         157 --RQITS--EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES  194 (785)
Q Consensus       157 --~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  194 (785)
                        ..+..  ++.-..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus       153 ~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          153 ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ---CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             ccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence              11111  222345667899999999999999999998764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=189.95  Aligned_cols=179  Identities=21%  Similarity=0.297  Sum_probs=135.3

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccC--CCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFS--ENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      +|.+...+.+..+.+|+.++|.|.+.+ +.+.+.|++++..+...  .++.+..++   .|.|.+++.+|+|.|+|.|.|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEEEE
Confidence            456666778889999999999999988 67889999999887643  344433333   699999999999999999999


Q ss_pred             c-Ccce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeee--e
Q psy2775         492 T-GDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF--E  566 (785)
Q Consensus       492 ~-g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~--~  566 (785)
                      . +...  ....+.|..++                                                    .+....  .
T Consensus        79 ~~~~~~~~~~~~l~v~~~p----------------------------------------------------~~~~~~~~~  106 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNVPP----------------------------------------------------AISMPQKSF  106 (189)
T ss_dssp             TTTTEEEEEEEEEEEEEEE----------------------------------------------------EEECSCCEE
T ss_pred             cCCCceEEEEEEEEecCCC----------------------------------------------------Ccccccccc
Confidence            7 4433  33455555442                                                    111111  1


Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      ...+.+|+.++|.|.+.|+|.|.+.|+++|..+..+.++..  .+...+|.|.++.. +|+|.|+|.|.|..|....++.
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~--~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~  183 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAF  183 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEE--ETTTTEEEECSCCG-GGCEEEEEEEEETTEEEEEEEE
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEE--ecCCCEEEEcCCCh-hhCeeEEEEEEeCCCceeEEEE
Confidence            44678899999999999999999999999999977665433  34456799999999 9999999999999999999999


Q ss_pred             EEEEe
Q psy2775         647 VTVDV  651 (785)
Q Consensus       647 l~V~~  651 (785)
                      |.|.|
T Consensus       184 l~V~v  188 (189)
T 2v5t_A          184 LQVFV  188 (189)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88863

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.89  E-value=3.4e-22  Score=192.99  Aligned_cols=176  Identities=15%  Similarity=0.203  Sum_probs=143.5

Q ss_pred             ccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775           8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus         8 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ..+..++|...|..+.+.+|++++|.|.+.+.|.+.+.|++++..+.....             ++|.|.+++.+|+|.|
T Consensus        14 ~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y   80 (218)
T 3k0w_A           14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-------------SELIFNAVHVKDAGFY   80 (218)
T ss_dssp             -----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS-------------SEEEETTCCGGGCEEE
T ss_pred             ccCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC-------------CEEEEccCChhhCeEe
Confidence            356789999999999999999999999999999999999999998765421             3499999999999999


Q ss_pred             EEEEEcCCeeE-EEEeeEEEeCCC-----------CCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcc
Q psy2775          88 TVVAKNREGEA-KMDIPVKVNTGK-----------PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK  155 (785)
Q Consensus        88 ~C~a~~~~~~~-~~~~~v~v~~~~-----------~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~  155 (785)
                      +|.+.+..+.. ...+.|.|....           ..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+.
T Consensus        81 ~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~  160 (218)
T 3k0w_A           81 VCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT  160 (218)
T ss_dssp             EEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECT
T ss_pred             EEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECC
Confidence            99999987754 444667776421           123677777778889999999999999999999999999999886


Q ss_pred             cceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCee-EEEEEEEEeec
Q psy2775         156 DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNVDP  202 (785)
Q Consensus       156 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~  202 (785)
                      ..      ...+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus       161 ~~------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          161 HE------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             TC------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             CC------CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence            54      2347999999999999999999998887 44457788864

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=5.2e-22  Score=195.37  Aligned_cols=191  Identities=21%  Similarity=0.358  Sum_probs=148.5

Q ss_pred             ccCCCCeeeec----CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCE---EEeecCCccceEEEEEEcccC
Q psy2775           8 LEGIPPTFSKK----TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV---VFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus         8 ~~~~~p~~~~~----~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +...||.|..+    +..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+.   ......      .+|+|.+++
T Consensus         7 v~~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~------~~L~i~~v~   80 (241)
T 3grw_A            7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ------WSLVMESVV   80 (241)
T ss_dssp             ----CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGG------TEEEECSCC
T ss_pred             ccCCCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccc------eEEEEEeCC
Confidence            34568888765    45799999999999999999999999999999988654322   222211      359999999


Q ss_pred             CCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceec-CCCceEeccCCcEEEEEEEeccCCCeEEEeE----CCEEcc
Q psy2775          81 KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILE-PLHDVSITEGESAVLSVQVGGEPSPKVEWYK----DGKLIK  155 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~----~g~~~~  155 (785)
                      .+|+|.|+|.+.|..+.....+.|.|....+.+|.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++    +|..+.
T Consensus        81 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~  160 (241)
T 3grw_A           81 PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG  160 (241)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSC
T ss_pred             cccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccC
Confidence            99999999999999998888888888765555555443 4567788899999999999999999999999    787765


Q ss_pred             cceE---E--------EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCC
Q psy2775         156 DRQI---T--------SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE  204 (785)
Q Consensus       156 ~~~~---~--------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  204 (785)
                      ....   .        ......+|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             TTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             CCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence            4311   0        11235679999999999999999999999999999999997543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.89  E-value=4.3e-22  Score=194.54  Aligned_cols=191  Identities=20%  Similarity=0.339  Sum_probs=151.5

Q ss_pred             ccCCCCeeeecC----CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCE---EEeecCCccceEEEEEEcccC
Q psy2775           8 LEGIPPTFSKKT----KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV---VFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus         8 ~~~~~p~~~~~~----~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      ....||.|...+    ..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+.   ......      .+|.|.+++
T Consensus        11 ~~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~------~~L~i~~~~   84 (231)
T 3ojm_B           11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH------WSLIMESVV   84 (231)
T ss_dssp             --CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG------TEEEECSCC
T ss_pred             CCccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCc------ceEEEecCC
Confidence            345678887766    7899999999999999999999999999999988654332   222111      359999999


Q ss_pred             CCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceec-CCCceEeccCCcEEEEEEEeccCCCeEEEeE----CCEEcc
Q psy2775          81 KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILE-PLHDVSITEGESAVLSVQVGGEPSPKVEWYK----DGKLIK  155 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~----~g~~~~  155 (785)
                      .+|+|.|+|.+.|..+.......|.|......+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+.
T Consensus        85 ~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~  164 (231)
T 3ojm_B           85 PSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG  164 (231)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBC
T ss_pred             cccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCcccc
Confidence            99999999999999998888888888765444555543 3457788999999999999999999999999    777664


Q ss_pred             cceE-----EE-----eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCC
Q psy2775         156 DRQI-----TS-----EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE  204 (785)
Q Consensus       156 ~~~~-----~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  204 (785)
                      ....     ..     .....+|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          165 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             TTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             CCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCC
Confidence            3310     00     1123469999999999999999999999999999999997543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.88  E-value=1.7e-22  Score=194.47  Aligned_cols=187  Identities=24%  Similarity=0.375  Sum_probs=138.7

Q ss_pred             EEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCC-----EEEEEeCcEE--EEEEccCCCC
Q psy2775         409 LNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSEN-----VTLSIDGKKQ--KLIIFSAGLE  480 (785)
Q Consensus       409 ~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~--~L~i~~~~~~  480 (785)
                      +.+...||.+...+....+.+|+.++|.|.+.+ +.+.+.|++++..+.....     .....++...  .|.|.+++.+
T Consensus         3 l~~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   82 (212)
T 2v9r_A            3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP   82 (212)
T ss_dssp             ---CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCC
T ss_pred             cCcccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcc
Confidence            344456788888888899999999999999987 7789999999998764321     1122222211  2445677999


Q ss_pred             CcEEEEEEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCC
Q psy2775         481 DAGEYSCRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA  558 (785)
Q Consensus       481 d~G~Y~C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  558 (785)
                      |+|.|+|.|.|. |.. ...+.|.|...+                                                   
T Consensus        83 d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~---------------------------------------------------  111 (212)
T 2v9r_A           83 DEGVYVCVARNYLGEAVSHDASLEVAILR---------------------------------------------------  111 (212)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEEECEEC---------------------------------------------------
T ss_pred             cCeEEEEEEECCCCceeecceEEEEEecc---------------------------------------------------
Confidence            999999999997 433 346777776543                                                   


Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      +.+...+....+.+|+.++|.|.+ .|+|.|.+.|+|++..+.......... +  ..|.|.++.. +|+|.|+|.|.|.
T Consensus       112 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-~--~~L~i~~~~~-~d~G~Y~C~a~N~  187 (212)
T 2v9r_A          112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-G--GKLMITYTRK-SDAGKYVCVGTNM  187 (212)
T ss_dssp             SSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE-T--TEEEESSCCG-GGCEEEEEEEEET
T ss_pred             ccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc-C--CeEEEeeCCH-hhCeeEEEEEecc
Confidence            122222335578899999999999 999999999999999997655433332 2  3699999999 9999999999999


Q ss_pred             CcceEEE-EEEEEE
Q psy2775         638 LGSATHG-ARVTVD  650 (785)
Q Consensus       638 ~g~~~~~-~~l~V~  650 (785)
                      .|...+. +.|.|.
T Consensus       188 ~g~~~s~~~~l~V~  201 (212)
T 2v9r_A          188 VGERESEVAELTVL  201 (212)
T ss_dssp             TEEEECCCEEEEEE
T ss_pred             cCceecceEEEEEE
Confidence            9987664 777776

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.88  E-value=1.8e-22  Score=200.30  Aligned_cols=204  Identities=13%  Similarity=0.113  Sum_probs=125.4

Q ss_pred             CCCCCceEEEEEEeccceEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeCCC------ceEEEEECC--EEc----
Q psy2775         388 ISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD------ALVKWYKDG--KEI----  455 (785)
Q Consensus       388 ~~~~d~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~------~~i~W~~~~--~~~----  455 (785)
                      +..+|+|.|+|.|........+.+...++.+...+....+.+|++++|.|.+.+.+      +.+.|+|++  ..+    
T Consensus        11 v~~~dsg~Y~C~a~g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~   90 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLI   90 (254)
T ss_dssp             ---------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEE
T ss_pred             ecCCccEEEEEcCchhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEE
Confidence            67889999999998322222222223356666667788899999999999998843      789999843  221    


Q ss_pred             --------ccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCc
Q psy2775         456 --------AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGD  525 (785)
Q Consensus       456 --------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  525 (785)
                              ....++.+..++....|+|.+++.+|+|.|+|.|.|. +. ......|.|.....                 
T Consensus        91 ~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~-----------------  153 (254)
T 2c1o_A           91 YLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADA-----------------  153 (254)
T ss_dssp             ETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCB-----------------
T ss_pred             EeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCC-----------------
Confidence                    1235677766777789999999999999999999986 32 12234666654210                 


Q ss_pred             eeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCC-
Q psy2775         526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSS-  602 (785)
Q Consensus       526 ~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~-  602 (785)
                                                      +|.+...........|+.++|.|.+.|. |+ +.|+|+|+|.++..+ 
T Consensus       154 --------------------------------~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  201 (254)
T 2c1o_A          154 --------------------------------APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  201 (254)
T ss_dssp             --------------------------------CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTE
T ss_pred             --------------------------------CCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcc
Confidence                                            1333332223334468899999999985 44 369999999988654 


Q ss_pred             CC-eeEEeeC-----CeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         603 PK-KREIFDG-----ENIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       603 ~~-~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .. ......+     ..+.|.|.++.. +|+|.|+|.|.|.....
T Consensus       202 ~~~~~~~~~~~g~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          202 LNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEECTTCSS
T ss_pred             eeccccccCCCCcEEEEEEEEeccccc-cCCCeEEEEEEcCCCCC
Confidence            11 1111111     145799999998 99999999999998754

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=2.8e-22  Score=192.92  Aligned_cols=179  Identities=24%  Similarity=0.389  Sum_probs=139.2

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEc------------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL------------QETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      |..|...+..+.+.+|++++|.|.+.+.|.+.+.|++++..+            ....++.+..        ..|+|.++
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--------~~L~i~~v   72 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--------SGITFSSV   72 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET--------TEEEESCC
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec--------eeEEEccc
Confidence            567888999999999999999999999899999999987542            1223333322        35999999


Q ss_pred             CCCCCeEEEEEEEcCCe--eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEE-EeccCCCeEEEeECCE-Ecc
Q psy2775          80 KKREEGVYTVVAKNREG--EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-VGGEPSPKVEWYKDGK-LIK  155 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~--~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~-~~g~p~~~v~W~~~g~-~~~  155 (785)
                      +.+|+|.|+|.|.+..+  .....+.|.|..    +|.+........+.+|+.+.|.|. +.+.|.+.+.|++++. .+.
T Consensus        73 ~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~  148 (212)
T 1f97_A           73 TRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV----PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT  148 (212)
T ss_dssp             CGGGCEEEEEEEEETTSSSEEEEEEEEEEEB----CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC
T ss_pred             CcccCeEEEEEEEccCCCcccEEEEEEEEEc----CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccc
Confidence            99999999999999866  556677777763    444433334467889999999999 6889999999999999 776


Q ss_pred             cce----------EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeE--EEEEEEEeec
Q psy2775         156 DRQ----------ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV--ESAANLNVDP  202 (785)
Q Consensus       156 ~~~----------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~  202 (785)
                      ...          ........+|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          149 ADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             -----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            432          2233445689999999999999999999999987  4456676654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=1.4e-22  Score=195.94  Aligned_cols=185  Identities=21%  Similarity=0.343  Sum_probs=138.8

Q ss_pred             EEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCC--CEEEEEeCc--EEEEEEccCCCCCcEEE
Q psy2775         411 VVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSE--NVTLSIDGK--KQKLIIFSAGLEDAGEY  485 (785)
Q Consensus       411 v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~--~~~~~~~~~--~~~L~i~~~~~~d~G~Y  485 (785)
                      ....+|.+...+....+.+|+.+.|.|.+.+ +.+.+.|+++|..+....  ...+...+.  ...|+|.+++.+|+|.|
T Consensus         5 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             -CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred             cccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence            3456788888888899999999999999988 678899999999886542  222222222  22347889999999999


Q ss_pred             EEEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEee
Q psy2775         486 SCRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIE  563 (785)
Q Consensus       486 ~C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~  563 (785)
                      +|.|.|. |.. .....|.|...+                                                   |.+..
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~~---------------------------------------------------~~~~~  113 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVLR---------------------------------------------------DDFRV  113 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEEC---------------------------------------------------CSCSB
T ss_pred             EEEEecCCCccccccceEEEEEeC---------------------------------------------------CCcEE
Confidence            9999997 433 335666665432                                                   22222


Q ss_pred             eeeeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCC--------CeeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         564 RFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSP--------KKREIFDGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~--------~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      .+....+.+|+.++|.|.+ .|+|.|.+.|+|+|..+....        +... .  ...+|.|.++.. +|+|.|+|.|
T Consensus       114 ~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~--~~~~L~i~~~~~-~d~G~Y~C~a  189 (217)
T 2vr9_A          114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI-V--DGGNLLISNVEP-IDEGNYKCIA  189 (217)
T ss_dssp             CCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE-E--TTTEEEESSCCS-TTCEEEEEEE
T ss_pred             CCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe-c--CCCcEEEeeCCH-HHCeEEEEEE
Confidence            2335678899999999999 899999999999999987432        2211 1  223699999999 9999999999


Q ss_pred             EcCCcceEEEEEEEEE
Q psy2775         635 TNELGSATHGARVTVD  650 (785)
Q Consensus       635 ~n~~g~~~~~~~l~V~  650 (785)
                      .|..|....+..+.|.
T Consensus       190 ~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          190 QNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcccceeccccEEEEE
Confidence            9999999888666664

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=4.1e-22  Score=191.81  Aligned_cols=179  Identities=23%  Similarity=0.315  Sum_probs=133.3

Q ss_pred             CcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEc------------ccCCCEEEEEeCcEEEEEEccCCCCCc
Q psy2775         416 PEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEI------------AFSENVTLSIDGKKQKLIIFSAGLEDA  482 (785)
Q Consensus       416 ~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~  482 (785)
                      ..+..++....+.+|+.+.|.|.+.+ +.+.+.|++++..+            ....++.+..    ..|.|.+++.+|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~   77 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDN   77 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccC
Confidence            34455667788999999999999998 78899999987652            2234444332    4799999999999


Q ss_pred             EEEEEEEeec-C--cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCC
Q psy2775         483 GEYSCRVGDT-G--DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP  559 (785)
Q Consensus       483 G~Y~C~a~n~-g--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p  559 (785)
                      |.|+|.|.|. |  .....+.|.|..++.                                                   
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~---------------------------------------------------  106 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPS---------------------------------------------------  106 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEBCCC---------------------------------------------------
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEcCCC---------------------------------------------------
Confidence            9999999996 5  345567777776532                                                   


Q ss_pred             eEeeeeeeeeeeecCeEEEEEE-EecCCCCceEEEeCCE-EecCCCCe-------eEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAK-VKASPAPSIVWFRNNK-PLLSSPKK-------REIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~-~i~~~~~~-------~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                       +........+.+|+.++|.|. +.|+|.|.+.|+|++. .+......       .........+|.|.++.. +|+|.|
T Consensus       107 -~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y  184 (212)
T 1f97_A          107 -KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA-FDSGEY  184 (212)
T ss_dssp             -CCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCG-GGCEEE
T ss_pred             -CcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecCh-hhCcEE
Confidence             111122456889999999999 7999999999999999 87654331       222334556799999999 999999


Q ss_pred             EEEEEcCCcceEEEEEEEEEe
Q psy2775         631 KVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      +|.|.|..|....+..+.|.+
T Consensus       185 ~C~a~n~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          185 YCQAQNGYGTAMRSEAAHMDA  205 (212)
T ss_dssp             EEEEECSSSCCEECCCEEEEE
T ss_pred             EEEEccccCCccccceEEEEE
Confidence            999999999985555555443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=188.04  Aligned_cols=180  Identities=21%  Similarity=0.282  Sum_probs=142.4

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-  492 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-  492 (785)
                      .+.+...+.+..+.+|+.+.|.|.+.+ +.+.+.|++++..+.....         ..|.|.+++.+|+|.|+|.|.|. 
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~~~n~~   88 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT---------SELIFNAVHVKDAGFYVCRVNNNF   88 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS---------SEEEETTCCGGGCEEEEEEEECTT
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC---------CEEEEccCChhhCeEeEEEEEcCC
Confidence            456667778889999999999999988 6788999999998865432         36999999999999999999997 


Q ss_pred             Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeee
Q psy2775         493 GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK  571 (785)
Q Consensus       493 g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  571 (785)
                      |.. ...+.|.|...+..+....+.+                                     ...+|.+...+....+.
T Consensus        89 ~~~~s~~~~l~V~~~~~~~~~~~~~~-------------------------------------~~~~p~~~~~~~~~~v~  131 (218)
T 3k0w_A           89 TFEFSQWSQLDVCDIPESFQRSVDGV-------------------------------------SESKLQICVEPTSQKLM  131 (218)
T ss_dssp             CCEECCCEEEEEECCCGGGCTTCCSB-------------------------------------CCSSCEEEECCCCEEEC
T ss_pred             CCceeeEEEEEEEccCcccccccccc-------------------------------------cCCCceEEECCCceeec
Confidence            533 5568888887654332221111                                     11236677777788899


Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc-eEEEEEEEEE
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS-ATHGARVTVD  650 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  650 (785)
                      +|+.++|.|.+.|+|.|.|.|++++..+..+.         ..+|.|.++.. +|+|.|+|.|.|..|. ....+.|.|.
T Consensus       132 ~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHET---------KKLYMVPYVDL-EHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             TTCCEEEECEEEBSSCCEEEEEETTEECTTCC---------SSEEEESSCCG-GGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             CCCcEEEEEEecccCCCeEEEEECCEECCCCC---------CCEEEEeecCh-hcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            99999999999999999999999999886543         24699999999 9999999999999987 4445666665

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=187.98  Aligned_cols=173  Identities=21%  Similarity=0.303  Sum_probs=139.2

Q ss_pred             cCCCeEEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775          25 EENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP  103 (785)
Q Consensus        25 ~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~  103 (785)
                      .+|+.+.|.|.+.+. |.+.|.|++++..+....++.+...++.    ..|+|.+++.+|+|.|+|.|.|..+.....+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~   90 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQ----IWLQINEPTPNDKGKYVMELFDGKTGHQKTVD   90 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTE----EEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCE----EEEEECCCCcccCEEEEEEEecCCcceEEEEE
Confidence            367888888988775 5789999999999988888877665542    46999999999999999999998887776666


Q ss_pred             EEEeC-----------------CCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce---EEEe-
Q psy2775         104 VKVNT-----------------GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSE-  162 (785)
Q Consensus       104 v~v~~-----------------~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~-  162 (785)
                      |.+..                 ..+.++.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....   +... 
T Consensus        91 l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~  170 (212)
T 2r15_A           91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA  170 (212)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET
T ss_pred             EEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC
Confidence            65431                 00123333444556789999999999999999999999999999987542   2222 


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      +...+|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       171 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          171 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            456799999999999999999999999999888888886

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=8.8e-22  Score=193.70  Aligned_cols=189  Identities=20%  Similarity=0.309  Sum_probs=141.0

Q ss_pred             cCCccccc----CCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCE-EEEEeCcEEEEEEccCCCCCcEEEEE
Q psy2775         414 LPPEISVP----LQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENV-TLSIDGKKQKLIIFSAGLEDAGEYSC  487 (785)
Q Consensus       414 ~~~~~~~~----~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C  487 (785)
                      .+|.+..+    +....+.+|+++.|.|.+.+ +.+.+.|++++..+...... ..........|.|.+++.+|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            35555433    34677889999999999998 67789999999988654432 11222233579999999999999999


Q ss_pred             EEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEe-eee
Q psy2775         488 RVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI-ERF  565 (785)
Q Consensus       488 ~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~-~~~  565 (785)
                      .|.|. |.......|.|...+..                                                +|.+. ...
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~------------------------------------------------~~~~~~~~~  121 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPH------------------------------------------------RPILQAGLP  121 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCC------------------------------------------------CCEEEECTT
T ss_pred             EEeecCCceEEEEEEEEeccCCC------------------------------------------------CceeecCCC
Confidence            99997 77777788888764210                                                02222 223


Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEe----CCEEecCCCCeeEEe--------eCCeEEEEEccCCCCCCceeEEEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFR----NNKPLLSSPKKREIF--------DGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~----~~~~i~~~~~~~~~~--------~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      ....+.+|+.++|.|.+.|+|.|.+.|++    ++..+..+.......        .....+|.|.++.. +|+|.|+|.
T Consensus       122 ~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~  200 (241)
T 3grw_A          122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE-RDGGEYLCR  200 (241)
T ss_dssp             CSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCG-GGCEEEEEE
T ss_pred             ccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCc-ccCcEEEEE
Confidence            46678899999999999999999999999    888876554432211        12356899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEEe
Q psy2775         634 ATNELGSATHGARVTVDV  651 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~~  651 (785)
                      |.|..|....++.|.|..
T Consensus       201 a~N~~g~~~~~~~l~V~~  218 (241)
T 3grw_A          201 ATNFIGVAEKAFWLSVHG  218 (241)
T ss_dssp             EECSSCEEEEEEEEEC--
T ss_pred             EecCcceEEEEEEEEecC
Confidence            999999998877777753

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.87  E-value=1e-21  Score=186.75  Aligned_cols=168  Identities=15%  Similarity=0.133  Sum_probs=131.5

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..|.|...|....+.+|++++|.|.+.+.|.+. +.|++++..+....              .+|.|.+++.+|+|.|+|
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------~~L~i~~v~~~D~G~Y~C   71 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDDSGEYRC   71 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------SEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------cEEEEecccccCCEEEEE
Confidence            457888889889999999999999999887765 99999998876543              349999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCCeEEEeECCEEcccceEEEeCCEEEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSPKVEWYKDGKLIKDRQITSEKNTHTL  168 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~L  168 (785)
                      .|.|...  +..+.|.|.    .+|.+...+ ...+.+|+.+.|.|.+.+. |.+.+.|++||..+...     .....|
T Consensus        72 ~a~n~~~--s~~~~l~V~----~~p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----~~~~~L  139 (204)
T 3sgj_C           72 QTQLSTL--SDPVQLEVH----IGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-----HHNSDF  139 (204)
T ss_dssp             EETTSBC--CCCEEEEEE----CSSEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EECCCE
T ss_pred             EeCCCcc--cccEEEEEe----cCceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----cCCceE
Confidence            9998543  345566665    345554443 3678899999999999655 56799999999886432     123479


Q ss_pred             EEcccCCCCcEEEEEEEEcCC-eeEEEEEEEEeecCC
Q psy2775         169 TLIQCSTKDKGRYSVKVTNKE-GTVESAANLNVDPYE  204 (785)
Q Consensus       169 ~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~  204 (785)
                      .|.+++.+|+|.|+|.|.|.. +..+..+.|.|...+
T Consensus       140 ~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          140 YIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            999999999999999999954 445556788887543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=8.9e-21  Score=177.75  Aligned_cols=164  Identities=18%  Similarity=0.267  Sum_probs=128.6

Q ss_pred             eEEecCCcEEEEEEEeC-CCc--eEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcceeEEEE
Q psy2775         425 VKVSRDEKASFEIELTK-GDA--LVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATL  501 (785)
Q Consensus       425 ~~v~~g~~~~l~C~~~~-~~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l  501 (785)
                      ..+.+|+.++|.|.+.+ +.+  .+.|++++..+.......     ....|.|.  +.+|+|.|+|.|.|.  ....+.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~-----~~~~l~i~--~~~d~G~Y~C~~~n~--~~~~~~l   78 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVD--SDDQWGEYSCVFLPE--PMGTANI   78 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-----SEEEEEEC--GGGCCEEEEEEEEST--TSCEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC-----CcEEEEEe--chhhCeEEEEEEECC--cCcEEEE
Confidence            45778999999999987 445  899999999886554321     23456666  689999999999983  4467788


Q ss_pred             EEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEE
Q psy2775         502 TVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK  581 (785)
Q Consensus       502 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~  581 (785)
                      .|..+                                                    |.+...+....+.+|+.++|.|.
T Consensus        79 ~V~~~----------------------------------------------------P~~~~~~~~~~~~~g~~~~l~C~  106 (184)
T 3b5h_A           79 QLHGP----------------------------------------------------PRVKAVKSSEHINEGETAMLVCK  106 (184)
T ss_dssp             EECCS----------------------------------------------------CCCEESCSEEEECTTSCEEEEEE
T ss_pred             EEecC----------------------------------------------------CceeecCCCcEEcCCCcEEEEEE
Confidence            88765                                                    33333334567889999999999


Q ss_pred             EecCC-CCceEEEe---CCE-EecCC--CCeeEEeeCCeEEEEEccCC-CCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         582 VKASP-APSIVWFR---NNK-PLLSS--PKKREIFDGENIILELKEAD-SETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       582 ~~g~P-~p~v~W~~---~~~-~i~~~--~~~~~~~~~~~~~L~i~~~~-~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +.|+| .|.|.|+|   ++. .+...  .++.+...+....|.|.++. . +|+|.|+|.|.|..|....++.|.|.
T Consensus       107 ~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          107 SESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME-ADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             CCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT-TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc-ccCceEEEEEEeCCCcceEEEEEEEe
Confidence            99999 78999999   444 44332  45666666777899999999 8 99999999999999999998888875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.87  E-value=1.7e-21  Score=180.70  Aligned_cols=166  Identities=16%  Similarity=0.156  Sum_probs=130.2

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..+|.|...|..+.+.+|++++|.|.+.+.|.+. +.|++++..+....              +.|.|.+++.+|+|.|+
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~--------------~~L~i~~~~~~d~G~Y~   70 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYR   70 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC--------------SEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCc--------------eEEEEeCCCcccCEEEE
Confidence            3578889999999999999999999998887765 89999998775321              34999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCC-eEEEeECCEEcccceEEEeCCEEE
Q psy2775          89 VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHT  167 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~  167 (785)
                      |.+.|..+  ...+.|.|.    .++.+... ....+.+|+.+.|.|.+.+.+++ .+.|+++|..+...     .....
T Consensus        71 C~~~n~~~--s~~~~l~V~----~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----~~~~~  138 (175)
T 1fnl_A           71 CQTNLSTL--SDPVQLEVH----IGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HHNSD  138 (175)
T ss_dssp             EECSSSCC--CCCEEEEEE----CSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EECCC
T ss_pred             EEeeCCcc--cccEEEEEe----CCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----CCCCE
Confidence            99998655  334556665    23333333 44678899999999999877654 99999999987432     12357


Q ss_pred             EEEcccCCCCcEEEEEEEEcCCee-EEEEEEEEee
Q psy2775         168 LTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNVD  201 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  201 (785)
                      |.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus       139 L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          139 FHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            999999999999999999997664 3445677775

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=186.27  Aligned_cols=186  Identities=18%  Similarity=0.235  Sum_probs=136.9

Q ss_pred             CCcccccCCCeEEecCCcEEEEEE-EeC-CC-ceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIE-LTK-GD-ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~-~~~-~~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      |+....++....+.+|+.+.|.|. +.+ +. +.+.|++++..+................|.|.+++.+|+|.|+|.|.|
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   87 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS   87 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEe
Confidence            444455667888999999999999 655 66 899999999877532222222222234799999999999999999999


Q ss_pred             c-Cccee---EEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeee
Q psy2775         492 T-GDKES---KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEE  567 (785)
Q Consensus       492 ~-g~~~~---~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~  567 (785)
                      . +....   ...+.+.....                                             ....+|.+......
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~p~~~~~~~~  122 (201)
T 3s97_C           88 PSITKSVFSKFIPLIPIPERT---------------------------------------------TKPYPADIVVQFKD  122 (201)
T ss_dssp             GGGTEEEECCCEEEEEECCSS---------------------------------------------CCCEEEEEEEECCC
T ss_pred             cCCCcchhhcccceeeccccc---------------------------------------------cCCCCCceEecCCc
Confidence            5 33332   23333332110                                             00012556665567


Q ss_pred             eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      ..+.+|+.++|.|.+.|+|.|.|.|++++..+....  ..  .....+|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus       123 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~--~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l  197 (201)
T 3s97_C          123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EI--STSGAVLKIFNIQL-EDEGIYECEAENIRGKDKHQARI  197 (201)
T ss_dssp             EEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EE--ETTTTEEEECSCCG-GGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--ee--cCCCCEEEEccCCh-hhCEEEEEEEEecCCceeeeEEE
Confidence            889999999999999999999999999999776442  22  22345799999999 99999999999999999999988


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|+
T Consensus       198 ~V~  200 (201)
T 3s97_C          198 YVQ  200 (201)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            886

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=185.50  Aligned_cols=183  Identities=19%  Similarity=0.282  Sum_probs=140.6

Q ss_pred             CCeeeecCCceEecCCCeEEEEEE-EEecCC-CeeEEEECCEEccC--CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVR-LVAVPE-PDLLWYYNGEPLQE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~-~~g~p~-~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      |+.+...+..+.+.+|++++|.|. +.+.|. +.+.|++++..+..  ..+......+      .+|.|.+++.+|+|.|
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~d~G~Y   81 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN------GNLYIANVEASDKGNY   81 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTT------CCEEESSCCGGGCEEE
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCC------CeEEECcCCcccCeEE
Confidence            344445668899999999999999 788888 99999999977642  2333332222      2499999999999999


Q ss_pred             EEEEEcCCeeEEE---EeeEEEeCC---CCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEE
Q psy2775          88 TVVAKNREGEAKM---DIPVKVNTG---KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS  161 (785)
Q Consensus        88 ~C~a~~~~~~~~~---~~~v~v~~~---~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~  161 (785)
                      +|.+.+..+....   ...+.+...   ...+|.+........+..|+.+.|.|.+.|.|.+.+.|++++..+.......
T Consensus        82 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~  161 (201)
T 3s97_C           82 SCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS  161 (201)
T ss_dssp             EEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEE
T ss_pred             EEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeec
Confidence            9999986654433   233333221   1234556665568889999999999999999999999999999877543222


Q ss_pred             eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       162 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                       ....+|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       162 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          162 -TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             -TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -CCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence             234489999999999999999999999999988888885

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.87  E-value=4.6e-22  Score=197.34  Aligned_cols=181  Identities=12%  Similarity=0.173  Sum_probs=124.1

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCC-----CCceEEEeCC--EEe------------cCCCCeeEEeeCCeEEEEEc
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASP-----APSIVWFRNN--KPL------------LSSPKKREIFDGENIILELK  619 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P-----~p~v~W~~~~--~~i------------~~~~~~~~~~~~~~~~L~i~  619 (785)
                      +.+...+....+.+|++++|.|.+.|.|     .+.|.|+|++  ..+            ....++.....+...+|+|.
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  118 (254)
T 2c1o_A           39 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKIS  118 (254)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEEC
Confidence            4455556678899999999999999998     4899999843  211            11245555556677899999


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEE-EEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCC
Q psy2775         620 EADSETDAGDYKVVATNELGSATH-GARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDP  698 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~  698 (785)
                      +++. +|+|.|+|.|.|..+.... ...|.|..                                      ...+|.+..
T Consensus       119 ~v~~-~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--------------------------------------~~~~P~v~~  159 (254)
T 2c1o_A          119 RVEA-EDLGIYYCVQGSHFPPTFGAGTKLELKR--------------------------------------ADAAPTVSI  159 (254)
T ss_dssp             SCCG-GGCSEEEEEECSSSSCEEBCCEEEEECC--------------------------------------CCBCCEEEE
T ss_pred             cCCc-ccCEEEEEEEEcCcceEecCCEEEEECC--------------------------------------CCCCCeeEe
Confidence            9999 9999999999998764332 23455531                                      113444432


Q ss_pred             CCCCcEEeecCCeEEEEEEEecC-CC-CceEEeECCEEeeec--cccccch------hhhcccccceeeeeeceEEEEEE
Q psy2775         699 PPPPEVLVKKGEDLKIEVRFKAL-PP-PKAEWTVNGTVIVPS--KRVKGKA------EFIKKLDDLEVKERENAVLEVEV  768 (785)
Q Consensus       699 ~~~~~~~~~~g~~~~l~C~~~g~-P~-p~i~W~~~~~~~~~~--~~~~~~~------~~~~~l~~~~v~~~~~~~~~c~~  768 (785)
                      ..... .+..|+.++|.|.+.|. |+ +.|+|+++|..+..+  .+.....      .....|.+..+...|.|.|+|.+
T Consensus       160 ~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a  238 (254)
T 2c1o_A          160 FPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEA  238 (254)
T ss_dssp             ECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEE
T ss_pred             ecCCh-hhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEE
Confidence            21211 12358899999999995 44 369999999998776  1111111      12346778888888999999999


Q ss_pred             eccc----ceeEEee
Q psy2775         769 TSDK----ADVKWFK  779 (785)
Q Consensus       769 ~~~~----~~~~w~~  779 (785)
                      .++.    ....|-|
T Consensus       239 ~n~~~~~~~~~~~~~  253 (254)
T 2c1o_A          239 THKTSTSPIVKSFNR  253 (254)
T ss_dssp             ECTTCSSCEEEEEEC
T ss_pred             EcCCCCCcceEeccC
Confidence            9744    4566654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.87  E-value=1.7e-21  Score=187.23  Aligned_cols=175  Identities=11%  Similarity=0.042  Sum_probs=124.6

Q ss_pred             CCCeEEecC--CcEEEEEEEeCCCceEEEEEC---CEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcce
Q psy2775         422 LQDVKVSRD--EKASFEIELTKGDALVKWYKD---GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKE  496 (785)
Q Consensus       422 ~~~~~v~~g--~~~~l~C~~~~~~~~i~W~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~  496 (785)
                      +..+.+.+|  ++++|.|.+.++.+.+.|+++   +..+....++.....+   .|+|.+++.+|+|.|+|.|.|.+...
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~~~~~   90 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKINDESY   90 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC----CE
T ss_pred             ceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEECCeeE
Confidence            356778899  999999999888889999884   6666555444333222   59999999999999999999964333


Q ss_pred             eE--EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeee-eeeeeeeec
Q psy2775         497 SK--ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER-FEEKTVKEK  573 (785)
Q Consensus       497 ~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g  573 (785)
                      .+  ..|.|....                                                  +|.+... .....+.+|
T Consensus        91 ~s~~~~l~v~~~~--------------------------------------------------~p~~~~~~~~~~~v~~G  120 (213)
T 2x1w_L           91 QSIMYIVVVVGYR--------------------------------------------------IYDVVLSPSHGIELSVG  120 (213)
T ss_dssp             ECCCEEEEECBCC--------------------------------------------------EEEEEEESCSCEEEETT
T ss_pred             EEEEEEEEEeCCc--------------------------------------------------ccceEEcCCCCeEEcCC
Confidence            33  555554311                                                  0222222 234488999


Q ss_pred             CeEEEEEEEecCCC--CceEEEeCCEEecCCCC-eeEEe-------eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         574 GTIRLMAKVKASPA--PSIVWFRNNKPLLSSPK-KREIF-------DGENIILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       574 ~~v~l~C~~~g~P~--p~v~W~~~~~~i~~~~~-~~~~~-------~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      ++++|.|.+.|.|.  +.+.|+++|..+..... .....       ....++|.|.+++. +|+|.|+|.|.|..|....
T Consensus       121 ~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~~  199 (213)
T 2x1w_L          121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAASSGLMTKKN  199 (213)
T ss_dssp             CCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCG-GGCEEEEEEEECSSCEEEE
T ss_pred             CCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCc-ccCEEEEEEEecCCCcEEE
Confidence            99999999999764  47999999886532211 00000       12245799999999 9999999999999999988


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      ++.|.|.
T Consensus       200 ~~~l~V~  206 (213)
T 2x1w_L          200 STFVRVH  206 (213)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8888887

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.86  E-value=4.8e-22  Score=188.31  Aligned_cols=171  Identities=11%  Similarity=0.051  Sum_probs=118.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+.....     ..........|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-----NPLEPKNKARFSIPSMTEHHAGRYRCY   76 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-----CCCSSTTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-----cccCCccccEEEeccCChhHCeEEEEE
Confidence            57899888874 8999999999999988765 8999999986643211     000111235699999999999999999


Q ss_pred             EEcCCeeEE--EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEE--E---eC
Q psy2775          91 AKNREGEAK--MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT--S---EK  163 (785)
Q Consensus        91 a~~~~~~~~--~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~--~---~~  163 (785)
                      |.|..+...  ..+.|.|.. ...+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|+|..+......  .   ..
T Consensus        77 a~n~~g~~~~s~~~~l~V~~-~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~  153 (196)
T 2d3v_A           77 YYSPAGWSEPSDPLELVVTG-FYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQ  153 (196)
T ss_dssp             EEETTEECBCCCCEEEEEEC-SSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSC
T ss_pred             EeCCCCcCCcCccEEEEecC-CCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCC
Confidence            998876432  345666653 22356665543 35788999999999999888 899999999887543221  1   12


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      ....|.|.+++.+|+|.|+|.|.|..+.
T Consensus       154 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          154 FQALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             ceeEEEeeecCcccCeeEEEEEEccCCC
Confidence            3478999999999999999999998753

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.86  E-value=3e-21  Score=185.48  Aligned_cols=177  Identities=17%  Similarity=0.164  Sum_probs=128.1

Q ss_pred             ecCCceEecCC--CeEEEEEEEEecCCCeeEEEEC---CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          17 KKTKPVYAEEN--SEVTLEVRLVAVPEPDLLWYYN---GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        17 ~~~~~~~v~~G--~~v~l~C~~~g~p~~~i~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      ..|..+.+.+|  ++++|.|.+.+ |.+.+.|+++   +..+....++......       .|+|.+++.+|+|.|+|.|
T Consensus        12 ~~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~-------~l~I~~v~~~D~G~Y~C~a   83 (213)
T 2x1w_L           12 DQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK-------GFTIPSYMISYAGMVFCEA   83 (213)
T ss_dssp             --CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT-------EEEEEGGGTTTCSEEEEEE
T ss_pred             CCceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc-------cEEEccCChhcCceEEEEE
Confidence            35689999999  99999999976 7789999884   6666555444332221       3999999999999999999


Q ss_pred             EcCCeeEEE-EeeEEEeCCCCCCCceec-CCCceEeccCCcEEEEEEEeccC--CCeEEEeECCEEcccceE---EE---
Q psy2775          92 KNREGEAKM-DIPVKVNTGKPEKPSILE-PLHDVSITEGESAVLSVQVGGEP--SPKVEWYKDGKLIKDRQI---TS---  161 (785)
Q Consensus        92 ~~~~~~~~~-~~~v~v~~~~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g~p--~~~v~W~~~g~~~~~~~~---~~---  161 (785)
                      .|..+.... .+.|.|..  ..+|.+.. +...+.+.+|+.++|.|.+.|.|  .+.+.|+++|..+.....   ..   
T Consensus        84 ~n~~~~~~s~~~~l~v~~--~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~  161 (213)
T 2x1w_L           84 KINDESYQSIMYIVVVVG--YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ  161 (213)
T ss_dssp             C----CEECCCEEEEECB--CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCC
T ss_pred             EECCeeEEEEEEEEEEeC--CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccc
Confidence            985443332 25566632  23444443 44455899999999999999854  458999999876543211   10   


Q ss_pred             -----eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecC
Q psy2775         162 -----EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPY  203 (785)
Q Consensus       162 -----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  203 (785)
                           .....+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...
T Consensus       162 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~  208 (213)
T 2x1w_L          162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED  208 (213)
T ss_dssp             SSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-
T ss_pred             cCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecc
Confidence                 122457999999999999999999999999999999999743

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.86  E-value=7.2e-22  Score=187.15  Aligned_cols=170  Identities=12%  Similarity=0.065  Sum_probs=128.3

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+......   ...  ......|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~--~~~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQN---PLE--PKNKARFSIPSMTEDYAGRYRCY   76 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEEC---CCS--SSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccc---ccc--CCceEEEEeccCCcccCceEEEE
Confidence            47889888888 8999999999999987 77899999999876432110   000  01235699999999999999999


Q ss_pred             EEcCCee--EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceE----EEeCC
Q psy2775          91 AKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKN  164 (785)
Q Consensus        91 a~~~~~~--~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~----~~~~~  164 (785)
                      |.|..+.  .+..+.|.|.. .+.+|.+...+. ..+.+|+.++|.|.+.+. ++.+.|+|+|..+.....    .....
T Consensus        77 a~n~~g~~~~s~~~~l~V~~-~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~  153 (196)
T 3p2t_A           77 YRSPVGWSQPSDPLELVMTG-AYSKPTLSALPS-PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQH  153 (196)
T ss_dssp             EEETTEEBCCCCCEEEEEEC-SSCCCEEEEESC-SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEE
T ss_pred             EeCCCcccCCCccEEEEecC-CCCCCEEEeCCc-ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCc
Confidence            9998873  23445666643 234566665543 367899999999999874 468999999987654321    12234


Q ss_pred             EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         165 THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ...|.|.+++.+|+|.|+|.|.|..+
T Consensus       154 ~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          154 QAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             ceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            56899999999999999999999875

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.86  E-value=9.2e-21  Score=179.80  Aligned_cols=176  Identities=15%  Similarity=0.217  Sum_probs=126.6

Q ss_pred             eeecCCc-eEecCCCeEEEEEEEEecCCCeeEEEECC-EEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          15 FSKKTKP-VYAEENSEVTLEVRLVAVPEPDLLWYYNG-EPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        15 ~~~~~~~-~~v~~G~~v~l~C~~~g~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |...|.. +.+.+|++++|.|.+.|.|.+.|.|+++. ..+  .... . ..+.    ...|+|.+++.+|+|.|+|.|.
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~-~-~~~~----~~~L~I~~v~~~D~G~Y~C~a~   74 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKV-T-NEGT----TSTLTMNPVSFGNEHSYLCTAT   74 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEE-E-EETT----EEEEEESSCCGGGCSEEEEEEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceE-E-EcCC----ccEEEECcCCHHHCEEEEEEEE
Confidence            4445555 45569999999999999999999999843 211  1111 1 1111    2459999999999999999999


Q ss_pred             cCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCC---CeEEEeECCEEcccceEEE-------e
Q psy2775          93 NREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDGKLIKDRQITS-------E  162 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~---~~v~W~~~g~~~~~~~~~~-------~  162 (785)
                      |..+..+..+.|.|.. .|..+.+..  . ..+.+|+.++|.|.+.|.++   +.|+|+++|..+.......       .
T Consensus        75 n~~~~~~~~~~l~V~~-~p~~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~  150 (202)
T 1vca_A           75 CESRKLEKGIQVEIYS-FPKDPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE  150 (202)
T ss_dssp             ETTEEEEEEEEEEEEB-CCSCCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCE
T ss_pred             ECCceEeeEEEEEEEe-CCCCCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcce
Confidence            9998887888888874 122233322  2 56889999999999987543   3799999999876443211       1


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCee-------EEEEEEEEeec
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGT-------VESAANLNVDP  202 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-------~~~~~~l~V~~  202 (785)
                      .....|.|.....+|.|.|+|+|.|..+.       .+.+..|.|..
T Consensus       151 ~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y  197 (202)
T 1vca_A          151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI  197 (202)
T ss_dssp             EEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred             EEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence            12345778888889999999999998765       45567777763

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.86  E-value=2.1e-21  Score=189.59  Aligned_cols=179  Identities=21%  Similarity=0.316  Sum_probs=137.6

Q ss_pred             CCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEE-EEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEE
Q psy2775         423 QDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTL-SIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKA  499 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~  499 (785)
                      ....+.+|+++.|.|.+.+ +.+.+.|++++..+....+... ........|.|.+++.+|+|.|+|.|.|. |......
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            6778999999999999997 6788999999998865543211 12223357999999999999999999997 7777788


Q ss_pred             EEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEee-eeeeeeeeecCeEEE
Q psy2775         500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIE-RFEEKTVKEKGTIRL  578 (785)
Q Consensus       500 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~l  578 (785)
                      .|.|...+..                                                +|.+.. .+....+.+|+.++|
T Consensus       107 ~l~V~~~~~~------------------------------------------------~p~~~~~~~~~~~~~~g~~~~l  138 (231)
T 3ojm_B          107 HLDVVERSRH------------------------------------------------RPILQAGLPANASTVVGGDVEF  138 (231)
T ss_dssp             EEEEECCCCC------------------------------------------------CCEECTTCSCCEEEETTCCEEE
T ss_pred             EEEEEcCCCC------------------------------------------------CCceeeccCCceEEEeCCcEEE
Confidence            8888764310                                                022221 234567889999999


Q ss_pred             EEEEecCCCCceEEEe----CCEEecCCCCeeE--Ee-----eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         579 MAKVKASPAPSIVWFR----NNKPLLSSPKKRE--IF-----DGENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       579 ~C~~~g~P~p~v~W~~----~~~~i~~~~~~~~--~~-----~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      .|.+.|+|.|.+.|++    +|..+..+.....  ..     .....+|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus       139 ~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l  217 (231)
T 3ojm_B          139 VCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYICKVSNYIGQANQSAWL  217 (231)
T ss_dssp             ECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCG-GGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCH-HHCeEEEEEEEeccceEeeEEEE
Confidence            9999999999999999    7877755443211  11     12235799999999 99999999999999999888888


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|.
T Consensus       218 ~V~  220 (231)
T 3ojm_B          218 TVL  220 (231)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            876

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.86  E-value=1.1e-21  Score=182.41  Aligned_cols=167  Identities=20%  Similarity=0.217  Sum_probs=128.8

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .+|.|...|..+.+.+|++++|.|.+.+.+.+ .+.|++++..+....              +.|.|.+++.+|+|.|+|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C   68 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAKFEDSGEYKC   68 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS--------------SEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCc--------------eEEEEeccceecCEEEEE
Confidence            57899999999999999999999999887774 699999998876431              349999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccceEEEeCCEEEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTL  168 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L  168 (785)
                      .+.|..+..  .+.|.|.    .++.+... ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...     .....|
T Consensus        69 ~~~~~~~s~--~~~l~V~----~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----~~~~~L  136 (176)
T 1f2q_A           69 QHQQVNESE--PVYLEVF----SDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-----YENHNI  136 (176)
T ss_dssp             ECTTSSCCC--CEEEEEE----CSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-----CCSSEE
T ss_pred             EcCCccccc--cEEEEEe----CcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-----cCCCeE
Confidence            999876543  4455554    23333333 34578899999999999 45667799999999987432     234589


Q ss_pred             EEcccCCCCcEEEEEEEEcCCee-EEEEEEEEeecC
Q psy2775         169 TLIQCSTKDKGRYSVKVTNKEGT-VESAANLNVDPY  203 (785)
Q Consensus       169 ~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~  203 (785)
                      .|.+++.+|+|.|+|.|.|..+. .+..+.|.|...
T Consensus       137 ~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A          137 SITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA  172 (176)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             EECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence            99999999999999999997554 334478888744

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.86  E-value=2.2e-22  Score=209.36  Aligned_cols=199  Identities=17%  Similarity=0.193  Sum_probs=149.2

Q ss_pred             CceEEEEEEeccceEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEE
Q psy2775         392 DEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQ  470 (785)
Q Consensus       392 d~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~  470 (785)
                      +.|.|+|.+.+......+ ..-.+|.+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+.......  ......
T Consensus       136 ~~~~~~C~~~~~l~~l~~-~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~  212 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAHMPN-ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--GGLPSL  212 (347)
T ss_dssp             GGGCCCCSSSSCSSCCCC-TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--CCSSEE
T ss_pred             cccCCCCCCChHHhcCCc-ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--eecccc
Confidence            468899988773222211 1113567777777788999999999999988 678899999987643221110  123456


Q ss_pred             EEEEccCCCCCcE-EEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775         471 KLIIFSAGLEDAG-EYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP  548 (785)
Q Consensus       471 ~L~i~~~~~~d~G-~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  548 (785)
                      .|.|.+++.+|+| .|+|.|.|. |.....+.|.|..+|                                         
T Consensus       213 ~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P-----------------------------------------  251 (347)
T 2ifg_A          213 GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPA-----------------------------------------  251 (347)
T ss_dssp             EEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEE-----------------------------------------
T ss_pred             eEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCC-----------------------------------------
Confidence            8999999999999 999999997 666666777775542                                         


Q ss_pred             ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-------CCeEEEEEccC
Q psy2775         549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEA  621 (785)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-------~~~~~L~i~~~  621 (785)
                                 .+    ....+.+|+.++|.|.+.|+|.|.|+|+|+|..+..+........       ....+|+|.++
T Consensus       252 -----------~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  316 (347)
T 2ifg_A          252 -----------SV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP  316 (347)
T ss_dssp             -----------EE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSC
T ss_pred             -----------ee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCC
Confidence                       22    122356799999999999999999999999999986544333221       23668999999


Q ss_pred             CCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         622 DSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .. +|+|.|+|.|.|..|....++.|.|.
T Consensus       317 ~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          317 TH-VNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             CG-GGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             Cc-ccCceEEEEEecCCCceeeEEEEEec
Confidence            99 99999999999999998888777764

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.86  E-value=2.9e-21  Score=191.20  Aligned_cols=262  Identities=11%  Similarity=0.103  Sum_probs=112.1

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      ...|..+.|.+|++++|+|.+. .+.+. +.|...-   ...   .....+.   .-..|.|.+++.+  |.|+|.+...
T Consensus         3 ~v~P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l---~~~---~~~~~g~---~~~~~~l~~v~~~--~~y~C~~~~~   70 (291)
T 1mq8_A            3 SVSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETPL---PKK---ELLLPGN---NRKVYELSNVQED--SQPMCYSNCP   70 (291)
T ss_dssp             EEECSEEEECTTCEEEEEEEEC-CSSCSEEEEECSS---CCC---CCCCSCS---SEEEEEEESCCSC--CCCEEEEECS
T ss_pred             EEeCCccEEcCCCeEEEEEeCC-CCCCccceEEecC---CCc---ccccCCC---ceEEEEEEecccC--CeEEEEEEcC
Confidence            4457789999999999999986 34444 8885311   000   0000111   1124788888753  4699999876


Q ss_pred             CeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC--eEEEeECCEEcccceEEEeCCEEEEEEc
Q psy2775          95 EGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP--KVEWYKDGKLIKDRQITSEKNTHTLTLI  171 (785)
Q Consensus        95 ~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~--~v~W~~~g~~~~~~~~~~~~~~~~L~i~  171 (785)
                      .......+.|.|+. .|..|.|...  ...+.+|+.++|.|.+.|. |..  +|+|||+++.+............+|.+.
T Consensus        71 ~~~~~~~v~l~V~~-~P~~v~I~~~--~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~  147 (291)
T 1mq8_A           71 DGQSTAKTFLTVYW-TPERVELAPL--PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL  147 (291)
T ss_dssp             SCEEEEECEEEECB-CCSCCCBCCC--CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECC
T ss_pred             CccEEEEEEEEEec-CCCCCEEecC--CccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEee
Confidence            55666777888864 3444444433  2457889999999999765 443  5999999988865542222334577777


Q ss_pred             ccCCCCcEEEEEEEEcCCee--------EEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCC
Q psy2775         172 QCSTKDKGRYSVKVTNKEGT--------VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH  243 (785)
Q Consensus       172 ~~~~~d~G~Y~C~a~n~~g~--------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  243 (785)
                      ..+.+|.+.|+|+|.|..+.        .+....|.|...++                            ..+.+..   
T Consensus       148 ~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~----------------------------~~~~~~~---  196 (291)
T 1mq8_A          148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA----------------------------TPPQLVS---  196 (291)
T ss_dssp             CSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------------------------
T ss_pred             eeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCC----------------------------CCceecC---
Confidence            77888888999999987542        12335566654321                            1122222   


Q ss_pred             cceeCCCCeEEEEEEEccCCCC---eEEEEECCEEcccceEEEeCCEEEEEEccC---CC--CCCeEEEEEEEeCCCceE
Q psy2775         244 DVSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKDRQITSEKNTHTLTLIQC---ST--KDKGRYSVKVTNKEGTVE  315 (785)
Q Consensus       244 ~~~~~~G~~~~l~C~~~g~p~~---~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~---~~--~d~G~Y~C~~~n~~g~~~  315 (785)
                      ...+.+|+.++|.|.+.|+|++   .+.|+++|+.+........ +  .+++...   ..  ++.+.|+|.+.+......
T Consensus       197 p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~~~g-~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~  273 (291)
T 1mq8_A          197 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN-D--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQE  273 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceeeecC-C--eEEEEEecceeEcCCCCEEEEEEEEeCCcceE
Confidence            2257799999999999997654   6999999998874332222 2  2333222   23  446778899988665666


Q ss_pred             EEEEEEEeccc
Q psy2775         316 SAANLNVDQGK  326 (785)
Q Consensus       316 ~~~~l~v~~~~  326 (785)
                      ....|+|+..|
T Consensus       274 ~~~~l~v~~~~  284 (291)
T 1mq8_A          274 TLQTVTIYSFP  284 (291)
T ss_dssp             -----------
T ss_pred             EEEEEEEEcCC
Confidence            77788887643

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.85  E-value=7.1e-21  Score=180.90  Aligned_cols=162  Identities=16%  Similarity=0.223  Sum_probs=122.6

Q ss_pred             CcccccCCCeEEecCCcEEEEEEEeC-CCce-EEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecC
Q psy2775         416 PEISVPLQDVKVSRDEKASFEIELTK-GDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG  493 (785)
Q Consensus       416 ~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g  493 (785)
                      |.+...+....+.+|++++|.|.+.+ +.+. +.|+++|..+....          ..|.|.+++.+|+|.|+|.|.|. 
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~-   76 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQLS-   76 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETTS-
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCCC-
Confidence            44555566678999999999999988 4444 99999999886543          37999999999999999999983 


Q ss_pred             cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeec
Q psy2775         494 DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEK  573 (785)
Q Consensus       494 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g  573 (785)
                      ..+..+.|.|..++                                                    .+... ....+.+|
T Consensus        77 ~~s~~~~l~V~~~p----------------------------------------------------~~~~~-~~~~v~~G  103 (204)
T 3sgj_C           77 TLSDPVQLEVHIGW----------------------------------------------------LLLQA-PRWVFKEE  103 (204)
T ss_dssp             BCCCCEEEEEECSS----------------------------------------------------EEEEC-SCSEEETT
T ss_pred             cccccEEEEEecCc----------------------------------------------------eEecC-CceeEeCC
Confidence            34556778877653                                                    11111 12467889


Q ss_pred             CeEEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC-cceEEEEEEEEE
Q psy2775         574 GTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL-GSATHGARVTVD  650 (785)
Q Consensus       574 ~~v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~  650 (785)
                      +.++|.|.+.+. |.+.|.|+|+|..+..        ......|.|.++.. +|+|.|+|.|.|.. +.....+.|.|.
T Consensus       104 ~~v~L~C~~~~~~p~~~v~W~k~g~~~~~--------~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          104 DPIHLRCHSWKNTALHKVTYLQNGKGRKY--------FHHNSDFYIPKATL-KDSGSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             CCEEEEEEEGGGCCCEEEEEEETTEEEEE--------EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CcEEEEEEecCCCCCceEEEEECCcEeec--------ccCCceEEECcCCc-ccCEEEEEEEEeCCCceecCcEEEEEe
Confidence            999999999766 6679999999998632        12244699999999 99999999999954 444444555554

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.85  E-value=2.1e-21  Score=186.42  Aligned_cols=184  Identities=13%  Similarity=0.045  Sum_probs=133.1

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEE--EEEEcccCCCCCeEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS--IVTIKSIKKREEGVY   87 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y   87 (785)
                      ..+|.|...|. ..+.+|++|+|.|.+.+ +.+.|.|+|++..+...... .....    ...  .|.|.+++.+|+|.|
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~~~~----~~~~~~L~I~~v~~~D~G~Y   79 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RLKFW----NETDPEFVIDHMDANKAGRY   79 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-ECC--------CCCEEEECSCCGGGCEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cCCCC----cceeeEEEEcccccccCEEE
Confidence            46789998887 58999999999999976 67899999998655322111 00000    012  599999999999999


Q ss_pred             EEEEEcCCeeEE--EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCE
Q psy2775          88 TVVAKNREGEAK--MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT  165 (785)
Q Consensus        88 ~C~a~~~~~~~~--~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  165 (785)
                      +|.|.|..+...  ..+.|.|.. ...+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+... .......
T Consensus        80 ~C~a~n~~~~~~~s~~~~l~V~~-~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~~~~~~~  156 (218)
T 1uct_A           80 QCQYRIGHYRFRYSDTLELVVTG-LYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQSGEHP  156 (218)
T ss_dssp             EEEEEETTTEEEECCCEEEEEEC-SSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEECSSS
T ss_pred             EEEEEcCCCceeecCCEEEEEcC-cccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-ccCCCcc
Confidence            999999765333  345566643 23456665554 457889999999997777778899999999877643 2233456


Q ss_pred             EEEEEcccCCCCcEEEEEEEEcCCe-----eEEEEEEEEeecC
Q psy2775         166 HTLTLIQCSTKDKGRYSVKVTNKEG-----TVESAANLNVDPY  203 (785)
Q Consensus       166 ~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~  203 (785)
                      ..|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|.+.
T Consensus       157 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          157 ANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             EEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             CEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            7899999999999999999998642     2234467777643

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.85  E-value=4.7e-21  Score=184.46  Aligned_cols=179  Identities=20%  Similarity=0.205  Sum_probs=133.3

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEcc------------CCCCEEEeecCCccceEEEEEEcc
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPLQ------------ETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      |.+...| .+.+.+|++++|.|.+.+.|.+.+.|+++  +....            ...++.+....    ...+|+|.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~   76 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSG----NMATLTISK   76 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEESS
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecC----CEEEEEECC
Confidence            5677777 99999999999999999889999999983  21110            22344433321    235699999


Q ss_pred             cCCCCCeEEEEEEEcCCe---eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeECCEE
Q psy2775          79 IKKREEGVYTVVAKNREG---EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKDGKL  153 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~---~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~g~~  153 (785)
                      ++.+|+|.|+|.|.+..+   .....+.|.|......+|.+...+....+..|+.+.|.|.+.|. |+ +.|.|++||..
T Consensus        77 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~  156 (213)
T 3mj8_L           77 AQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTP  156 (213)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcc
Confidence            999999999999999877   34455677777544467777766655556689999999999885 43 49999999998


Q ss_pred             cccceE----EEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE
Q psy2775         154 IKDRQI----TSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  196 (785)
Q Consensus       154 ~~~~~~----~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  196 (785)
                      +.....    ....+    ...|.|.++..+|+|.|+|.|.|..+....++
T Consensus       157 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          157 ITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             ECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            865311    10222    34689999999999999999999987665544

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.85  E-value=4.6e-21  Score=189.72  Aligned_cols=180  Identities=13%  Similarity=0.218  Sum_probs=130.6

Q ss_pred             eeecCCceEecCCCeEEEEEEEEe---cCCCeeEEEECCEEcc------------------------------CCCCEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVA---VPEPDLLWYYNGEPLQ------------------------------ETDEVVF   61 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g---~p~~~i~W~~~~~~~~------------------------------~~~~~~~   61 (785)
                      +..++..+.+.+|++++|.|.+.+   .|.+.|.|++++....                              ...+..+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            455677899999999999999988   7888999999875321                              0112222


Q ss_pred             eecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee-----EEEEeeEEEeCCCCCCCcee-cCCCceEeccCCcEEEEE
Q psy2775          62 SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE-----AKMDIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVLSV  135 (785)
Q Consensus        62 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~-----~~~~~~v~v~~~~~~~p~i~-~~~~~~~~~~G~~v~l~C  135 (785)
                      ...+     ..+|+|.+++.+|+|.|+|.|.+..+.     +...+.|.|.... .+|.+. ..+....+.+|+.+.|.|
T Consensus        85 ~~~~-----~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~~~~~~~~~~~~v~~g~~v~L~C  158 (250)
T 2fbo_J           85 ANLA-----APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT-PSNNVHVSTAEVVQVDEGNDITMTC  158 (250)
T ss_dssp             SCTT-----SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS-CCSCCEECCCSEEECCTTCCEEECC
T ss_pred             ccCC-----cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC-CCCeEEEecCceEEecCCCcEEEEE
Confidence            1111     135999999999999999999987663     3556777776422 233333 344567788899999999


Q ss_pred             EEeccCCCeEEEeECCEEcccce------------------------EEEeCCEEEEEEcccCCCCcEEEEEEEEc---C
Q psy2775         136 QVGGEPSPKVEWYKDGKLIKDRQ------------------------ITSEKNTHTLTLIQCSTKDKGRYSVKVTN---K  188 (785)
Q Consensus       136 ~~~g~p~~~v~W~~~g~~~~~~~------------------------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n---~  188 (785)
                      .+.+.|.|.|+|++++..+....                        ........+|.|.+++.+|+|.|+|.|.|   .
T Consensus       159 ~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          159 PCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             CEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             EecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            99998999999999988775411                        00001225899999999999999999999   5


Q ss_pred             CeeEEEEEEEEe
Q psy2775         189 EGTVESAANLNV  200 (785)
Q Consensus       189 ~g~~~~~~~l~V  200 (785)
                      .|....++.|.|
T Consensus       239 ~g~~~~~~~l~V  250 (250)
T 2fbo_J          239 LDADRSSTILKV  250 (250)
T ss_dssp             GGEEEEEEEEEC
T ss_pred             cCccceeEEEeC
Confidence            556666666654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.85  E-value=4.4e-20  Score=175.10  Aligned_cols=172  Identities=16%  Similarity=0.218  Sum_probs=128.0

Q ss_pred             ceEeccCCcEEEEEEEeccCCCeEEEeECC-EEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         122 DVSITEGESAVLSVQVGGEPSPKVEWYKDG-KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       122 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      ...+.+|+.+.|.|.+.|.|.+.|.|+++. ..+. ...........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V   88 (202)
T 1vca_A           10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (202)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEE
Confidence            344558999999999999999999999843 2222 23334455668999999999999999999999998888888888


Q ss_pred             ecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCC---CeEEEEECCEEcc
Q psy2775         201 DPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDGKLIK  277 (785)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~---~~v~W~~~~~~l~  277 (785)
                      ...+                             ..+.+..  . ..+.+|+.++|.|.+.+.++   +.|.|++++..+.
T Consensus        89 ~~~p-----------------------------~~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           89 YSFP-----------------------------KDPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             EBCC-----------------------------SCCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             EeCC-----------------------------CCCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence            7543                             1222222  1 56789999999999987543   3799999998876


Q ss_pred             cceEEE-------eCCEEEEEEccCCCCCCeEEEEEEEeCCCc-------eEEEEEEEEeccc
Q psy2775         278 DRQITS-------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGT-------VESAANLNVDQGK  326 (785)
Q Consensus       278 ~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~-------~~~~~~l~v~~~~  326 (785)
                      ......       ......|.|.....+|+|.|+|+|.|..+.       ...+..|.|.++|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          137 SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             EEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             ccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            322111       112346788888889999999999998765       3556788888654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.85  E-value=8e-21  Score=182.99  Aligned_cols=181  Identities=19%  Similarity=0.293  Sum_probs=133.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC----CCeeEEEE----------------CCEEccC-----CCCEEEeecCCccc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP----EPDLLWYY----------------NGEPLQE-----TDEVVFSDQSDMHS   69 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p----~~~i~W~~----------------~~~~~~~-----~~~~~~~~~~~~~~   69 (785)
                      |...+..+.+.+|++++|.|.+.+.+    .+.+.|++                ++..+..     ..+..+... +...
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~   81 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN-DVKS   81 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCS-CGGG
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEecc-CccC
Confidence            44566789999999999999998876    46999998                3333321     334443321 1111


Q ss_pred             eEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEe
Q psy2775          70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWY  148 (785)
Q Consensus        70 ~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~  148 (785)
                      ...+|+|.+++.+|+|.|+|.|.+..+.....+.|.|..    +|.+........+..|+.+.|.|.+ .|.|.+.+.|+
T Consensus        82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~----~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~  157 (214)
T 3jz7_A           82 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV----KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQ  157 (214)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC----CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEE
T ss_pred             CcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc----CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEE
Confidence            224599999999999999999999999888888888874    4444333333447889999999999 88999999999


Q ss_pred             EC--CEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         149 KD--GKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       149 ~~--g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      ++  +..+..... ......+|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       158 ~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          158 KLSDSQTMPTPWL-AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             ECSTTCCCCGGGG-GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             ECCCCCccCccce-eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            94  444433211 12223489999999999999999999999999888888886

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.85  E-value=2.3e-21  Score=183.96  Aligned_cols=170  Identities=13%  Similarity=0.094  Sum_probs=122.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+....+.......     ...|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~   76 (198)
T 1ugn_A            4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVK-----KGQFPIPSITWEHTGRYRCY   76 (198)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHT-----TTEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCc-----ccEEEECCCCHHHCeEEEEE
Confidence            57899888874 8999999999999988765 69999999766321110000011     13599999999999999999


Q ss_pred             EEcCC-ee--EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEE-----Ee
Q psy2775          91 AKNRE-GE--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT-----SE  162 (785)
Q Consensus        91 a~~~~-~~--~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~-----~~  162 (785)
                      |.|.. +.  .+..+.|.|.. .+.+|.+...+ ...+.+|+.+.|.|.+.+. .+.+.|+|+|..+......     ..
T Consensus        77 a~n~~~g~~~~s~~~~l~V~~-~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~  153 (198)
T 1ugn_A           77 YGSDTAGRSESSDPLELVVTG-AYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARG  153 (198)
T ss_dssp             EEETTTEECCCCCCEEEEEEC-SSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------
T ss_pred             EECCCCCcccCCccEEEEEcc-cccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCC
Confidence            99987 52  23455666653 23356665443 3678899999999999887 7799999999887533221     11


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       154 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          154 SSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cceeEEEecccCcccCeEEEEEEEeCCC
Confidence            2357899999999999999999999865

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.85  E-value=6.1e-22  Score=190.11  Aligned_cols=173  Identities=25%  Similarity=0.364  Sum_probs=133.7

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEc------------cCCCCEEEeecCCccceEEEEEEcc
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL------------QETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      .++.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++.+..        ..|+|.+
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--------~~L~i~~   74 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--------TGITFKS   74 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--------TEEECSC
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec--------cEEEEee
Confidence            5678888999999999999999999999899999999987542            1122232221        3599999


Q ss_pred             cCCCCCeEEEEEEEcCCe--eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcc
Q psy2775          79 IKKREEGVYTVVAKNREG--EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK  155 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~--~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~  155 (785)
                      ++.+|+|.|+|.|.+..+  .....+.|.|..    +|.+........+..|+.+.|.|.+ .+.|.+.+.|+++|..+.
T Consensus        75 ~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~  150 (209)
T 1nbq_A           75 VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV----PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP  150 (209)
T ss_dssp             CCTTSCSEEEEEEEETTSSCEECCEEECCEEB----CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCC
T ss_pred             CCHHHCcEEEEEEecCCCCccceEEEEEEEec----CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCC
Confidence            999999999999998755  344455666653    4444433445568899999999997 889999999999998876


Q ss_pred             cce----------EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE
Q psy2775         156 DRQ----------ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA  195 (785)
Q Consensus       156 ~~~----------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  195 (785)
                      ...          ........+|.|.++..+|+|.|+|.|.|..|....+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  200 (209)
T 1nbq_A          151 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS  200 (209)
T ss_dssp             SCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             CccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccccc
Confidence            532          1122244689999999999999999999999987444

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.85  E-value=7.7e-22  Score=189.39  Aligned_cols=179  Identities=19%  Similarity=0.339  Sum_probs=133.0

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEc------------ccCCCEEEEEeCcEEEEEEccCCCCC
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEI------------AFSENVTLSIDGKKQKLIIFSAGLED  481 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d  481 (785)
                      +..+..++....+.+|+++.|.|.+.+ +.+.+.|++++..+            ....++.+.  +  ..|.|.+++.+|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--P--TGITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--T--TEEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee--c--cEEEEeeCCHHH
Confidence            344555667778899999999999998 78889999987552            112333332  2  479999999999


Q ss_pred             cEEEEEEEeec-C--cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCC
Q psy2775         482 AGEYSCRVGDT-G--DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA  558 (785)
Q Consensus       482 ~G~Y~C~a~n~-g--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  558 (785)
                      +|.|+|.|.|. |  .....+.|.|..+|..                                                 
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~-------------------------------------------------  110 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK-------------------------------------------------  110 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEBCCCC-------------------------------------------------
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEecCCcC-------------------------------------------------
Confidence            99999999996 4  2345667777765421                                                 


Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCe-------eEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKK-------REIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~-------~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                         ........+.+|+.++|.|.+ .|+|.|.+.|+|++..+..+...       .........+|.|.++.. +|+|.|
T Consensus       111 ---~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y  186 (209)
T 1nbq_A          111 ---PTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEY  186 (209)
T ss_dssp             ---CCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG-GGCCCE
T ss_pred             ---CCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccc-cCCeEE
Confidence               111123457889999999997 89999999999999988765432       111223456799999999 999999


Q ss_pred             EEEEEcCCcceEEEEEEEEE
Q psy2775         631 KVVATNELGSATHGARVTVD  650 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|.|.|..|....+..+.|.
T Consensus       187 ~C~a~n~~g~~~~s~~v~l~  206 (209)
T 1nbq_A          187 SCEARNGYGTPMTSNAVRME  206 (209)
T ss_dssp             EEEEECSSSCCEECCCBCCE
T ss_pred             EEEEeCCcCcccccccEEEE
Confidence            99999999998666555554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=1.3e-20  Score=176.97  Aligned_cols=168  Identities=13%  Similarity=0.104  Sum_probs=125.4

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .+|.|...|.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+.....     ..........|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~   75 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCI   75 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-----ccCCCcceeEEEeCcCCcccCeEEEEE
Confidence            47889888887 8999999999999865 4568999999987642100     000111235699999999999999999


Q ss_pred             EEcCCeeE--EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEE
Q psy2775          91 AKNREGEA--KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL  168 (785)
Q Consensus        91 a~~~~~~~--~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L  168 (785)
                      +.|..+..  +..+.|.|.. ...+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+|+|..+.. ..........|
T Consensus        76 ~~~~~~~~~~s~~~~l~V~~-~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~-~~~~~~~~~~L  151 (188)
T 1oll_A           76 YRVGELWSEPSNLLDLVVTE-MYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV-QRGYGKVQAEF  151 (188)
T ss_dssp             EEETTEECCCCCCEEEEEES-CSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE-EEEECSSEEEE
T ss_pred             ecCCCCCCCCCCceEEEecc-cCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc-cccCCCceeEE
Confidence            98865532  3345566653 22356666544 456889999999999865 4569999999977654 22344567789


Q ss_pred             EEcccCCCCcEEEEEEEEcCC
Q psy2775         169 TLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       169 ~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      .|.+++.+|+|.|+|.|.|..
T Consensus       152 ~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          152 PLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEECCGGGCEEEEEECEEET
T ss_pred             EECCCCcCCCcEEEEEEEcCC
Confidence            999999999999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.85  E-value=2.5e-21  Score=201.39  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=144.3

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe-EE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG-VY   87 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y   87 (785)
                      .-.+|.|...+..+.+.+|++++|.|.+.|.|.+.+.|++++..+.....      .......++|.|.+++.+|+| .|
T Consensus       155 ~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~~Y  228 (347)
T 2ifg_A          155 SCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM------KSGGLPSLGLTLANVTSDLNRKNV  228 (347)
T ss_dssp             TCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC------CCCCSSEEEEEEESCCSTTTTCCE
T ss_pred             cCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc------cceecccceEEEeeCChHHCCCeE
Confidence            34589999999999999999999999999999999999999865432211      111223467999999999999 99


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEE----e-
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS----E-  162 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~----~-  162 (785)
                      +|.|.|..|.....+.|.|.    .+|.+    ......+|+.+.|.|.+.|.|.|.|+|+++|..+.......    . 
T Consensus       229 ~C~a~n~~g~~~~~~~l~V~----~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~  300 (347)
T 2ifg_A          229 TCWAENDVGRAEVSVQVNVS----FPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP  300 (347)
T ss_dssp             EECCEETTEECCEEECCCCB----EEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCC
T ss_pred             EEEEEcCCCCEEEEEEEEEc----CCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEee
Confidence            99999999887777666665    45554    11234578999999999999999999999999987542211    1 


Q ss_pred             -----CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeec
Q psy2775         163 -----KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP  202 (785)
Q Consensus       163 -----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  202 (785)
                           ....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       301 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             CTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             cCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence                 2356899999999999999999999999998888888863

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.85  E-value=3.2e-21  Score=185.77  Aligned_cols=174  Identities=19%  Similarity=0.260  Sum_probs=128.6

Q ss_pred             ccCCCeEEecCCcEEEEEEEeCC-----CceEEEEE----------------CCEEccc-----CCCEEEEE---eCcEE
Q psy2775         420 VPLQDVKVSRDEKASFEIELTKG-----DALVKWYK----------------DGKEIAF-----SENVTLSI---DGKKQ  470 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~~-----~~~i~W~~----------------~~~~~~~-----~~~~~~~~---~~~~~  470 (785)
                      .++..+.+.+|++++|.|.+.+.     .+.+.|++                ++..+..     ..+..+..   .....
T Consensus         5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   84 (214)
T 3jz7_A            5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA   84 (214)
T ss_dssp             -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred             cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence            34456778999999999999873     36899998                4444321     33444432   11345


Q ss_pred             EEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccc
Q psy2775         471 KLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT  549 (785)
Q Consensus       471 ~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  549 (785)
                      .|.|.+++.+|+|.|+|.|.|. |.....+.|.|..++.                                         
T Consensus        85 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~-----------------------------------------  123 (214)
T 3jz7_A           85 SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS-----------------------------------------  123 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCB-----------------------------------------
T ss_pred             cEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCC-----------------------------------------
Confidence            7999999999999999999997 7677788899887632                                         


Q ss_pred             cCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEE-ecCCCCceEEEeCC--EEecCCCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNN--KPLLSSPKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~--~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                                 +........+.+|+.++|.|.+ .|.|.|.|.|+|++  ..+.....    ......+|.|.++.. +|
T Consensus       124 -----------~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~-~d  187 (214)
T 3jz7_A          124 -----------GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL----AEMTSPVISVKNASS-EY  187 (214)
T ss_dssp             -----------SCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG----GGTTSSEEEECSCCG-GG
T ss_pred             -----------CceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce----eccCCCEEEEecCCH-HH
Confidence                       1111224457889999999999 89999999999954  33322111    122334799999999 99


Q ss_pred             ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         627 AGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|.|+|.|.|..|....++.|.|.
T Consensus       188 ~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          188 SGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             CEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CEEEEEEEEcCCCcEEEEEEEEEe
Confidence            999999999999999888877775

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.85  E-value=2.2e-20  Score=173.19  Aligned_cols=163  Identities=17%  Similarity=0.218  Sum_probs=123.2

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-CCce-EEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-GDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT  492 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  492 (785)
                      +|.+...+....+.+|+.++|.|.+.+ +.+. +.|++++..+...          ...|.|.+++.+|+|.|+|.|.|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~~~n~   76 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLS   76 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSS
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEEeeCC
Confidence            456666667778999999999999988 4444 8999999887532          237999999999999999999985


Q ss_pred             CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeee
Q psy2775         493 GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKE  572 (785)
Q Consensus       493 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~  572 (785)
                       .....+.|.|..++                                                    .++. .....+.+
T Consensus        77 -~~s~~~~l~V~~~~----------------------------------------------------~~~~-~~~~~~~~  102 (175)
T 1fnl_A           77 -TLSDPVQLEVHIGW----------------------------------------------------LLLQ-APRWVFKE  102 (175)
T ss_dssp             -CCCCCEEEEEECSS----------------------------------------------------EEEE-CSCSEEET
T ss_pred             -cccccEEEEEeCCC----------------------------------------------------ceee-CCCceecC
Confidence             22456777776432                                                    1111 12346788


Q ss_pred             cCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc-eEEEEEEEEE
Q psy2775         573 KGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS-ATHGARVTVD  650 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  650 (785)
                      |+.++|.|.+.|.|++ .+.|+|+|..+..        ......|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|.
T Consensus       103 g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~--------~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          103 EDPIHLRCHSWKNTALHKVTYLQNGKDRKY--------FHHNSDFHIPKATL-KDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             TCCEEEEEEECTTCCCEEEEEEETTEEEEE--------EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCEEEEEEcCCCCCceEEEEEECCeEccC--------CCCCCEEEEcccCh-hhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            9999999999988665 9999999998732        12245699999999 9999999999997664 3334555554

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=8.5e-20  Score=171.02  Aligned_cols=163  Identities=19%  Similarity=0.286  Sum_probs=128.9

Q ss_pred             ceEecCCCeEEEEEEEEecCCC--eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEP--DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA   98 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~   98 (785)
                      ...+.+|++++|.|.+.+.|.+  .+.|++++..+......         .....|.|.  +.+|+|.|+|.|.|...  
T Consensus         7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------~~~~~l~i~--~~~d~G~Y~C~~~n~~~--   73 (184)
T 3b5h_A            7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------GQKTEFKVD--SDDQWGEYSCVFLPEPM--   73 (184)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------CSEEEEEEC--GGGCCEEEEEEEESTTS--
T ss_pred             EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------CCcEEEEEe--chhhCeEEEEEEECCcC--
Confidence            3677899999999999887776  89999999887654321         112457776  68999999999998432  


Q ss_pred             EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccC-CCeEEEeE---CC-EEccc---c--eEEEeCCEEEE
Q psy2775          99 KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK---DG-KLIKD---R--QITSEKNTHTL  168 (785)
Q Consensus        99 ~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-~~~v~W~~---~g-~~~~~---~--~~~~~~~~~~L  168 (785)
                       ..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++   ++ ..+..   .  .+........|
T Consensus        74 -~~~~l~V~----~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  148 (184)
T 3b5h_A           74 -GTANIQLH----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSEL  148 (184)
T ss_dssp             -CEEEEEEC----CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEE
T ss_pred             -cEEEEEEe----cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEE
Confidence             44566775    577777777778899999999999999999 78999999   44 44432   1  23344566789


Q ss_pred             EEcccC-CCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         169 TLIQCS-TKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       169 ~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      .|.++. .+|+|.|+|.|.|..|.....+.|.|.
T Consensus       149 ~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          149 HIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            999999 899999999999999999988888885

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.84  E-value=2.3e-20  Score=176.77  Aligned_cols=168  Identities=15%  Similarity=0.124  Sum_probs=128.4

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEE--EeCCEEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT--SEKNTHTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      .+|.|...+.. .+.+|+.++|.|.+.+ +.+.+.|+|+|..+......  ......+|.|.+++.+|+|.|+|.|.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            56777776666 7899999999999987 67899999999887643221  12456789999999999999999999998


Q ss_pred             ee--EEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeE
Q psy2775         190 GT--VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKV  267 (785)
Q Consensus       190 g~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v  267 (785)
                      |.  .+..+.|.|....                             .+|.+...+.. .+.+|+.++|.|.+.+ +++.+
T Consensus        82 g~~~~s~~~~l~V~~~~-----------------------------~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~  130 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAY-----------------------------SKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTF  130 (196)
T ss_dssp             EEBCCCCCEEEEEECSS-----------------------------CCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEE
T ss_pred             cccCCCccEEEEecCCC-----------------------------CCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEE
Confidence            73  2345667775332                             34555554443 6789999999999987 45689


Q ss_pred             EEEECCEEcccc----eEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy2775         268 EWYKDGKLIKDR----QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG  312 (785)
Q Consensus       268 ~W~~~~~~l~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g  312 (785)
                      .|+++|..+...    ..........|.|.+++.+|+|.|+|.|.|..+
T Consensus       131 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            999999876522    112233456899999999999999999999865

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.84  E-value=3.8e-20  Score=175.59  Aligned_cols=172  Identities=12%  Similarity=0.172  Sum_probs=118.4

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecC-
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG-  493 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g-  493 (785)
                      +|.+...+. ..+.+|++++|.|.+.+.++.+.|+|++..+........ .......|.|.+++.+|+|.|+|.|.|.. 
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~   82 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQ-ELVKKGQFPIPSITWEHTGRYRCYYGSDTA   82 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSCH-HHHTTTEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCcEEEEEECCccccccccccc-cCCcccEEEECCCCHHHCeEEEEEEECCCC
Confidence            456655555 378899999999999886668999999987642111000 01122479999999999999999999953 


Q ss_pred             ---cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeee
Q psy2775         494 ---DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTV  570 (785)
Q Consensus       494 ---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v  570 (785)
                         ..+..+.|.|...+.                                                 +|.+... ....+
T Consensus        83 g~~~~s~~~~l~V~~~~~-------------------------------------------------~p~i~~~-~~~~v  112 (198)
T 1ugn_A           83 GRSESSDPLELVVTGAYI-------------------------------------------------KPTLSAQ-PSPVV  112 (198)
T ss_dssp             EECCCCCCEEEEEECSSC-------------------------------------------------CCEEEEE-SCSEE
T ss_pred             CcccCCccEEEEEccccc-------------------------------------------------CCccccC-Ccccc
Confidence               334567788876321                                                 1333222 23578


Q ss_pred             eecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee-EEe-eCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         571 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIF-DGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      .+|++++|.|.+.|. .|.|.|+|+|..+....... ... .+....|.|.++.. +|+|.|+|.|.|..+.
T Consensus       113 ~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          113 NSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSP-SRRWWYRCYAYDSNSP  182 (198)
T ss_dssp             ETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCT-TSCEEEEEEEECTTST
T ss_pred             CCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCc-ccCeEEEEEEEeCCCC
Confidence            899999999999998 78999999998874332211 111 22457899999999 9999999999999763

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.84  E-value=2e-20  Score=172.71  Aligned_cols=164  Identities=16%  Similarity=0.224  Sum_probs=127.5

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecC-CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .+|.|...|..+.+.+|++++|.|.+.+.| .+.+.|++++..+.....              .+.|.+++.+|+|.|+|
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~d~G~Y~C   68 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTC   68 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEE
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc--------------ceEEEecccccCeEEEE
Confidence            357778888889999999999999998876 578999999998865422              16678999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccceEEEeCCEEEE
Q psy2775          90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTL  168 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L  168 (785)
                      .+.+....  ..+.|.|..    +|.+... ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..     ......|
T Consensus        69 ~~~~~~~s--~~~~l~v~~----~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-----~~~~~~L  136 (170)
T 3ry4_A           69 QTGQTSLS--DPVHLTVLF----EWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-----SHLDPTF  136 (170)
T ss_dssp             EETTSBCC--CCEEEEEEC----CSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-----ESSCCEE
T ss_pred             EEeCCCce--EeEEEEEEC----CceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-----cCCCCeE
Confidence            99976543  345566652    3444333 35678899999999999 4556689999999988642     2334579


Q ss_pred             EEcccCCCCcEEEEEEEEcCCee-EEEEEEEEe
Q psy2775         169 TLIQCSTKDKGRYSVKVTNKEGT-VESAANLNV  200 (785)
Q Consensus       169 ~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V  200 (785)
                      .|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       137 ~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          137 SIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            99999999999999999999986 333455555

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.84  E-value=3.7e-21  Score=179.99  Aligned_cols=161  Identities=13%  Similarity=0.115  Sum_probs=123.1

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++...        ....      ..|.|.+++.+|+|.|+|
T Consensus         6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~~~~------~~L~i~~v~~~D~G~Y~C   69 (184)
T 2gi7_A            6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------YQDQ------AVLFIPAMKRSLAGRYRC   69 (184)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------EESS------SEEEESSCCGGGCEEEEE
T ss_pred             CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------cCcc------cEEEECcCChhhCceEEE
Confidence            367888888875 8999999999999877 77899999998651        1111      349999999999999999


Q ss_pred             EEEcCCeeE--EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEE
Q psy2775          90 VAKNREGEA--KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT  167 (785)
Q Consensus        90 ~a~~~~~~~--~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  167 (785)
                      .|.|..+..  +..+.|.|.. ...+|.+...+ ...+.+|+.+.|.|.+.+. ++.+.|+|+|..+.... ........
T Consensus        70 ~a~n~~g~~~~s~~~~l~V~~-~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~-~~~~~~~~  145 (184)
T 2gi7_A           70 SYQNGSLWSLPSDQLELVATG-VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKN-PERWYRAS  145 (184)
T ss_dssp             EEEETTEEBCCCCCEEEEEES-SSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCC-CCEEEEES
T ss_pred             EEEcCCCccCCCCCEEEEecC-cCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCccee-cCCCceEE
Confidence            999987632  2345566643 23456666554 4567899999999998755 46999999998876421 12223557


Q ss_pred             EEEcccCCCCcEEEEEEEEcCCe
Q psy2775         168 LTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      |.|.+++.+|+|.|+|.|.|..+
T Consensus       146 L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          146 FPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             SSEEEETTCCSEEEEEEEECTTS
T ss_pred             EEEccCCccCCeEEEEEEEeCCC
Confidence            99999999999999999999754

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.84  E-value=4.6e-20  Score=176.73  Aligned_cols=176  Identities=15%  Similarity=0.279  Sum_probs=132.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC-------------------CCCEEEeecCCccceEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE-------------------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      |...+..+.+.+|++++|.|.+.+.+.+.+.|++++.....                   ..+..+..+       .+|.
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-------~~L~   74 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-------GSLL   74 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT-------SCEE
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC-------CeEE
Confidence            34455668899999999999987888889999997643221                   112222111       2499


Q ss_pred             EcccCCCCCeEEEEEEEcCC-eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEc
Q psy2775          76 IKSIKKREEGVYTVVAKNRE-GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI  154 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~-~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~  154 (785)
                      |.+++.+|+|.|+|.+.+.. +.....+.|.|.. .+..|.+......  +..|+.+.|.|.+.+.| +.+.|+++|..+
T Consensus        75 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l  150 (208)
T 3r4d_A           75 FQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQ-PVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSL  150 (208)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEC-CCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEEC
T ss_pred             EccccccCCeEEEEEEEcccCceeEEEEEEEecc-CCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeC
Confidence            99999999999999999985 5666677777763 3344666555444  88999999999998866 799999999998


Q ss_pred             ccc-eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEee
Q psy2775         155 KDR-QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVD  201 (785)
Q Consensus       155 ~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~  201 (785)
                      ... .........+|.|.++..+|+|.|+|.|.|..|...+. ++|.|.
T Consensus       151 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          151 QLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             CCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             CCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            754 23333344689999999999999999999999976653 666654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.84  E-value=6.5e-21  Score=176.37  Aligned_cols=153  Identities=17%  Similarity=0.200  Sum_probs=114.6

Q ss_pred             eEEecCCcEEEEEE-Ee--CCCceEEEEECCEEcc----------cCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         425 VKVSRDEKASFEIE-LT--KGDALVKWYKDGKEIA----------FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       425 ~~v~~g~~~~l~C~-~~--~~~~~i~W~~~~~~~~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      +.+.+|++++|.|. ..  .+.+.|.|+|++..+.          ...++.+..++   .|.|.+++.+|+|.|+|.|.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEEe
Confidence            45779999999994 33  2456799999997542          34455553333   499999999999999999999


Q ss_pred             c-Ccc--eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeee
Q psy2775         492 T-GDK--ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK  568 (785)
Q Consensus       492 ~-g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~  568 (785)
                      . |..  ...+.|.|..++.                                                 .|.+.      
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~-------------------------------------------------~p~i~------  107 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVS-------------------------------------------------KPMIY------  107 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCC-------------------------------------------------CCEEE------
T ss_pred             CCCCEEEEEEEEEEEeCCCC-------------------------------------------------CCEEE------
Confidence            7 665  5567777765421                                                 02221      


Q ss_pred             eeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775         569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT  648 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  648 (785)
                        ..+..++|.|.+.|.|.|.|+|+|+|..+..+.+           +.|.++.. +|+|.|+|.|.|..|...+.+.|.
T Consensus       108 --~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~-~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          108 --WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWT-NLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             --EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEECS-CCSSCEEEEEEETTEEEEEEECCC
T ss_pred             --ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEEEc-cCCeEEEEEEEecCCCceeccccc
Confidence              2245699999999999999999999998864433           34446667 999999999999999988877665


Q ss_pred             E
Q psy2775         649 V  649 (785)
Q Consensus       649 V  649 (785)
                      +
T Consensus       174 ~  174 (176)
T 1hng_A          174 C  174 (176)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.84  E-value=9.4e-21  Score=181.93  Aligned_cols=167  Identities=13%  Similarity=0.042  Sum_probs=121.1

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEE--EEEEccCCCCCcEEEEEEEeec
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ--KLIIFSAGLEDAGEYSCRVGDT  492 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~  492 (785)
                      +|.+...+. ..+.+|++++|.|.+.++.+.+.|+|+|..+...... ........  .|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   86 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   86 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCCCCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEEEcC
Confidence            455655555 4788999999999998888899999998765432221 10111223  7999999999999999999996


Q ss_pred             -Ccc--eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeee
Q psy2775         493 -GDK--ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT  569 (785)
Q Consensus       493 -g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~  569 (785)
                       |..  +....|.|.+...                                                 +|.+...+ ...
T Consensus        87 ~~~~~~s~~~~l~V~~~~~-------------------------------------------------~P~i~~~p-~~~  116 (218)
T 1uct_A           87 HYRFRYSDTLELVVTGLYG-------------------------------------------------KPFLSADR-GLV  116 (218)
T ss_dssp             TTEEEECCCEEEEEECSSC-------------------------------------------------CCEEEESS-CSE
T ss_pred             CCceeecCCEEEEEcCccc-------------------------------------------------CCEEEeCC-CCc
Confidence             432  3346667765210                                                 14443322 457


Q ss_pred             eeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         570 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      +.+|++++|.|.+.+.|.+.+.|+|+|..+...    .........|.|.+++. +|+|.|+|.|.|..
T Consensus       117 v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          117 LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDL-NVSGIYRCYGWYNR  180 (218)
T ss_dssp             ECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCG-GGCEEEEEEEECTT
T ss_pred             cCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccCCCccCEEEEccCCc-ccCEEEEEEEEcCC
Confidence            889999999998778888999999999877541    12334567899999999 99999999999864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.84  E-value=2.8e-20  Score=172.74  Aligned_cols=164  Identities=18%  Similarity=0.246  Sum_probs=122.9

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeCC-C-ceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTKG-D-ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~~-~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      .+|.+...+....+.+|++++|.|.+.+. . ..+.|++++..+...          ...|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcCC
Confidence            35667777777889999999999999874 3 359999999987542          24799999999999999999998


Q ss_pred             cCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeee
Q psy2775         492 TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK  571 (785)
Q Consensus       492 ~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  571 (785)
                      .. ....+.|.|..++                                                    .+. ......+.
T Consensus        73 ~~-~s~~~~l~V~~~~----------------------------------------------------~~~-~~~~~~~~   98 (176)
T 1f2q_A           73 VN-ESEPVYLEVFSDW----------------------------------------------------LLL-QASAEVVM   98 (176)
T ss_dssp             SS-CCCCEEEEEECSS----------------------------------------------------EEE-EESCSEEE
T ss_pred             cc-ccccEEEEEeCcc----------------------------------------------------eee-cCCcceee
Confidence            52 2345667776331                                                    111 11234678


Q ss_pred             ecCeEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce-EEEEEEEE
Q psy2775         572 EKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV  649 (785)
Q Consensus       572 ~g~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  649 (785)
                      +|+.++|.|.+. |.|.+.+.|+|+|..+...        .....|.|.++.. +|+|.|+|.|.|..|.. ...+.|.|
T Consensus        99 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V  169 (176)
T 1f2q_A           99 EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW--------YENHNISITNATV-EDSGTYYCTGKVWQLDYESEPLNITV  169 (176)
T ss_dssp             TTSCEEEEEEEGGGCCEEEEEEEETTEECCSC--------CCSSEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCEEEEEEecCCCCceEEEEEECCEEEeee--------cCCCeEEECCCCc-ccCEEEEEEEEeCCcceEecCEEEEE
Confidence            999999999995 6677899999999988432        2345799999999 99999999999975543 33355555


Q ss_pred             E
Q psy2775         650 D  650 (785)
Q Consensus       650 ~  650 (785)
                      .
T Consensus       170 ~  170 (176)
T 1f2q_A          170 I  170 (176)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.84  E-value=8.1e-21  Score=179.83  Aligned_cols=178  Identities=10%  Similarity=0.078  Sum_probs=120.0

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      +|.|...+. ..+.+|++++|.|.+.|.|. .+.|+|+|..+..... ..........|.|.+++. +|+|.|+|.|.|.
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            5 KATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTE-HHAGRYRCYYYSP   80 (196)
T ss_dssp             BCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCG-GGCEEEEEEEEET
T ss_pred             CCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCCh-hHCeEEEEEEeCC
Confidence            477877665 48999999999999998876 9999999987743211 111234567899999999 9999999999999


Q ss_pred             CcceEE--EEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEE
Q psy2775         638 LGSATH--GARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE  715 (785)
Q Consensus       638 ~g~~~~--~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~  715 (785)
                      .|....  .+.|.|..  .                                    ..+|.+...  ....+.+|++++|.
T Consensus        81 ~g~~~~s~~~~l~V~~--~------------------------------------~~~p~i~~~--~~~~v~~G~~v~L~  120 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTG--F------------------------------------YNKPTLSAL--PSPVVTSGENVTLQ  120 (196)
T ss_dssp             TEECBCCCCEEEEEEC--S------------------------------------SCCCEEEC-------------CEEE
T ss_pred             CCcCCcCccEEEEecC--C------------------------------------CCCCeEEcc--CCccccCCCcEEEE
Confidence            875443  35555541  1                                    123444332  12357899999999


Q ss_pred             EEEecCCCCceEEeECCEEeeeccccc-c--chhhhcccccceeeeeeceEEEEEEecccceeEEeec
Q psy2775         716 VRFKALPPPKAEWTVNGTVIVPSKRVK-G--KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKN  780 (785)
Q Consensus       716 C~~~g~P~p~i~W~~~~~~~~~~~~~~-~--~~~~~~~l~~~~v~~~~~~~~~c~~~~~~~~~~w~~~  780 (785)
                      |.+.|.| |.|.|+|+|..+....... .  .......|.+..+...|+|.|+|.+.+......|...
T Consensus       121 C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~  187 (196)
T 2d3v_A          121 CGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEP  187 (196)
T ss_dssp             EEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEEEEECCC
T ss_pred             EEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCCCccCCC
Confidence            9999998 9999999999875432211 1  1112247888899999999999999987766777643

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=4.6e-20  Score=173.14  Aligned_cols=166  Identities=13%  Similarity=0.100  Sum_probs=121.1

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-C
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-G  493 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g  493 (785)
                      +|.+...+.. .+.+|++++|.|.+.++.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.|.|. +
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   81 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCCCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence            4555555555 788999999999998777789999999876421100 001123468999999999999999999985 3


Q ss_pred             c--ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeee
Q psy2775         494 D--KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK  571 (785)
Q Consensus       494 ~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  571 (785)
                      .  .+..+.|.|.+...                                                 +|.+...+ ...+.
T Consensus        82 ~~~~s~~~~l~V~~~~~-------------------------------------------------~p~i~~~p-~~~v~  111 (188)
T 1oll_A           82 WSEPSNLLDLVVTEMYD-------------------------------------------------TPTLSVHP-GPEVI  111 (188)
T ss_dssp             ECCCCCCEEEEEESCSC-------------------------------------------------CCEEEEES-CSEEE
T ss_pred             CCCCCCceEEEecccCC-------------------------------------------------CCeEEECC-CCccc
Confidence            2  24456777765310                                                 14443322 35688


Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      +|+.++|.|.+.+ +.+.+.|+|+|..+..    ..........|.|.+++. +|+|.|+|.|.|..
T Consensus       112 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          112 SGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNN  172 (188)
T ss_dssp             TTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCG-GGCEEEEEECEEET
T ss_pred             cCCEEEEEEEcCC-CCCEEEEEECCccccc----cccCCCceeEEEECCCCc-CCCcEEEEEEEcCC
Confidence            9999999999886 4579999999976643    122345667899999999 99999999999875

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=1.1e-19  Score=176.62  Aligned_cols=178  Identities=13%  Similarity=0.194  Sum_probs=122.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCC---eeEEEECCEEc-----------cC------CCCEEEeecCCccceEEEEEEc
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEP---DLLWYYNGEPL-----------QE------TDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~---~i~W~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      ++.++.+.+|++|+|.|.+.+.+.+   .|.|+|++...           ..      ..+.... .........+|+|.
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~-~~~~~~~~~~L~I~   88 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL-RDGITAGKAALRIH   88 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEE-CTTGGGTEEEEEES
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEe-cccccCCeEEEEEe
Confidence            4567899999999999999876553   69999876321           10      1122222 22223345679999


Q ss_pred             ccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCCeEEEeECC-EEcc
Q psy2775          78 SIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSPKVEWYKDG-KLIK  155 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~~v~W~~~g-~~~~  155 (785)
                      +++.+|+|.|+|.|.|..+.....+.+.+..      .+........+.+|+.+.|.|.+.| .|.|.|+|++++ ..+.
T Consensus        89 ~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~------~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A           89 NVTASDSGKYLCYFQDGDFYEKALVELKVAA------LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             eCchHHCeeEEEEEECCCcEEEEEEEEeecc------ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            9999999999999999998877766666542      1222223556778999999999987 599999999965 4444


Q ss_pred             cce--EEEe-CC-EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeec
Q psy2775         156 DRQ--ITSE-KN-THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP  202 (785)
Q Consensus       156 ~~~--~~~~-~~-~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  202 (785)
                      ...  .... .+ -..+.+..++.+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       163 ~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          163 TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             CCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            322  1111 22 23344556788999999999999999999888888853

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=1.3e-19  Score=175.94  Aligned_cols=175  Identities=17%  Similarity=0.204  Sum_probs=116.1

Q ss_pred             cCCCeEEecCCcEEEEEEEeCC-C---ceEEEEECCEE-----------ccc------CCCEEEEEe---CcEEEEEEcc
Q psy2775         421 PLQDVKVSRDEKASFEIELTKG-D---ALVKWYKDGKE-----------IAF------SENVTLSID---GKKQKLIIFS  476 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~~-~---~~i~W~~~~~~-----------~~~------~~~~~~~~~---~~~~~L~i~~  476 (785)
                      |..++.+.+|++++|.|.+.+. .   ..|.|+|++..           +..      ..+......   .+...|.|.+
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence            4456788999999999999862 2   26999987632           111      112232221   2357899999


Q ss_pred             CCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         477 AGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      ++.+|+|.|+|.|.|. |.......+.+..+.                                                
T Consensus        90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~------------------------------------------------  121 (226)
T 4f80_A           90 VTASDSGKYLCYFQDGDFYEKALVELKVAALG------------------------------------------------  121 (226)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC------------------------------------------------
T ss_pred             CchHHCeeEEEEEECCCcEEEEEEEEeeccce------------------------------------------------
Confidence            9999999999999996 544443333332221                                                


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEee-CC-eEEEEEccCCCCCCceeEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFD-GE-NIILELKEADSETDAGDYKV  632 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~-~~-~~~L~i~~~~~~~d~G~Y~C  632 (785)
                            ........+.+|+.+.|.|.+.| .|.|.|+|+|++..+..........+ ++ ...+.+.+++. +|+|.|+|
T Consensus       122 ------~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~-~d~G~YtC  194 (226)
T 4f80_A          122 ------SDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG-SSGEGVSC  194 (226)
T ss_dssp             ------CCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC-----CEEE
T ss_pred             ------ecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEech-hcCcEEEE
Confidence                  11112456788999999999998 59999999997654433332222222 22 23445556777 99999999


Q ss_pred             EEEcCCcceEEEEEEEEE
Q psy2775         633 VATNELGSATHGARVTVD  650 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~  650 (785)
                      .|+|..|...+++.|.|.
T Consensus       195 ~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          195 TIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             EEEETTTTEEEEEEECCC
T ss_pred             EEEeCCCCeEEEEEEEEC
Confidence            999999999998888875

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.83  E-value=4.7e-20  Score=177.40  Aligned_cols=180  Identities=18%  Similarity=0.243  Sum_probs=130.2

Q ss_pred             cccccCCCeEEecCCcEEEEEEEeC-CCceEEEEEC--CEEcc------------cCCCEEEEEeCcEEEEEEccCCCCC
Q psy2775         417 EISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKD--GKEIA------------FSENVTLSIDGKKQKLIIFSAGLED  481 (785)
Q Consensus       417 ~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~d  481 (785)
                      .+..++ ...+.+|++++|.|.+.+ +.+.+.|+|.  +....            ...++.+........|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            344555 778999999999999996 6788999982  22111            2346666667778899999999999


Q ss_pred             cEEEEEEEeec-C---cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCC
Q psy2775         482 AGEYSCRVGDT-G---DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQ  557 (785)
Q Consensus       482 ~G~Y~C~a~n~-g---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  557 (785)
                      +|.|+|.|.|. +   .....+.|.|...+.                                                .
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------------~  113 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPN------------------------------------------------A  113 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEECSCC------------------------------------------------B
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeCCCC------------------------------------------------C
Confidence            99999999997 4   234557787774321                                                1


Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeE-EeeCC----eEEEEEccCCCCCCceeE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDY  630 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~-~~~~~----~~~L~i~~~~~~~d~G~Y  630 (785)
                      +|.+...+....+.+|+.++|.|.+.|. |++ .|.|+|+|..+..+..... ...++    ...|.|.++.. +|+|.|
T Consensus       114 ~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y  192 (213)
T 3mj8_L          114 APSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAW-KSRNTF  192 (213)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHH-HSCSCE
T ss_pred             CCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHc-CCCCEE
Confidence            2455444444455689999999999996 443 9999999999865321100 01222    24599999988 999999


Q ss_pred             EEEEEcCCcceEEEEE
Q psy2775         631 KVVATNELGSATHGAR  646 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~  646 (785)
                      +|.|.|..|....++.
T Consensus       193 ~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          193 ICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             EEEEEETTEEEEEEEC
T ss_pred             EEEEEECCccEEeeec
Confidence            9999999987666543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.83  E-value=1e-19  Score=175.77  Aligned_cols=181  Identities=12%  Similarity=0.124  Sum_probs=130.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCC---eeEEEECCEEccCCC------------------CEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPEP---DLLWYYNGEPLQETD------------------EVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~~---~i~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.|.+|++++|.|.+.+.|.+   .|.|+|++..+....                  ++.+... .......+|+
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~sL~   82 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPP-PRNPLDGSVL   82 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSS-CCCTTBCCEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecc-cccCCeEEEE
Confidence            45778999999999999999887765   489999875432211                  1111111 1111224599


Q ss_pred             EcccCCCCCeEEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEc
Q psy2775          76 IKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI  154 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~  154 (785)
                      |.+++.+|+|.|.|.+.+..+... ....+.+..   .++..........+..|+.+.|.|.+.|.|++.|+|++++..+
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~  159 (218)
T 4frw_A           83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLV---PPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGT  159 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB---CCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCE
T ss_pred             EeeccHHHCCceeEEEEeccCceeeeEEEEEEee---eccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCccc
Confidence            999999999999999987655433 333344432   2333344445677788999999999999999999999999887


Q ss_pred             ccceEEEeC----CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         155 KDRQITSEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       155 ~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      .........    ..+.|.|.++..+|+|.|+|.|.|..|..+..+.+.|.
T Consensus       160 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          160 TSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             ccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            655333222    24579999999999999999999999977776666664

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.83  E-value=1.8e-20  Score=185.53  Aligned_cols=179  Identities=15%  Similarity=0.194  Sum_probs=124.2

Q ss_pred             ccCCCeEEecCCcEEEEEEEeC----CCceEEEEECCEEcc------------------------------cCCCEEEEE
Q psy2775         420 VPLQDVKVSRDEKASFEIELTK----GDALVKWYKDGKEIA------------------------------FSENVTLSI  465 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~----~~~~i~W~~~~~~~~------------------------------~~~~~~~~~  465 (785)
                      .++..+.+.+|++++|.|.+.+    +.+.+.|++++....                              ...+..+..
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3445778899999999999984    567899999875421                              111222211


Q ss_pred             eCcEEEEEEccCCCCCcEEEEEEEeec-Ccc-----eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceee
Q psy2775         466 DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDK-----ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQV  539 (785)
Q Consensus       466 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (785)
                      + ....|.|.+++.+|+|.|+|.|.|. +..     ...+.|.|..++..     +                        
T Consensus        87 ~-~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~-----~------------------------  136 (250)
T 2fbo_J           87 L-AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPS-----N------------------------  136 (250)
T ss_dssp             T-TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCC-----S------------------------
T ss_pred             C-CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCC-----C------------------------
Confidence            1 1247999999999999999999996 432     34777888764210     0                        


Q ss_pred             EEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCe--eEE---------
Q psy2775         540 KWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK--REI---------  608 (785)
Q Consensus       540 ~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~--~~~---------  608 (785)
                                         ...+.......+.+|+.++|.|.+.|.|.|.|+|+|++..+......  ..+         
T Consensus       137 -------------------~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~  197 (250)
T 2fbo_J          137 -------------------NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGIT  197 (250)
T ss_dssp             -------------------CCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCE
T ss_pred             -------------------eEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCcc
Confidence                               11112223567788999999999999999999999999887543211  000         


Q ss_pred             ----------eeCCeEEEEEccCCCCCCceeEEEEEEc---CCcceEEEEEEE
Q psy2775         609 ----------FDGENIILELKEADSETDAGDYKVVATN---ELGSATHGARVT  648 (785)
Q Consensus       609 ----------~~~~~~~L~i~~~~~~~d~G~Y~C~a~n---~~g~~~~~~~l~  648 (785)
                                .......|.|.++.. +|+|.|+|.|.|   ..|....++.|.
T Consensus       198 ~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          198 WFSSEIAGRASFSGARNLVIRAAKI-TDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             EECTTTTTSEEEETTTEEEECSCCG-GGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             ccCceEecccccCCccEEEEecCCc-ccCEEEEEEecCCccccCccceeEEEe
Confidence                      011235799999999 999999999999   455555555554

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.82  E-value=3.1e-20  Score=171.78  Aligned_cols=156  Identities=14%  Similarity=0.224  Sum_probs=117.3

Q ss_pred             ceEecCCCeEEEEEEEEe--cCCCeeEEEECCEEcc----------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          21 PVYAEENSEVTLEVRLVA--VPEPDLLWYYNGEPLQ----------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g--~p~~~i~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      .+.+.+|++++|.|...+  .+.+.|.|+|++..+.          ...++.+..+       ..|+|.+++.+|+|.|+
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~-------gsL~I~~v~~~D~G~Y~   77 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN-------GDLKIKNLTRDDSGTYN   77 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT-------SCEEESSCCGGGCEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC-------CcEEEcccccccCEEEE
Confidence            477899999999994322  4567899999997542          2344444221       13999999999999999


Q ss_pred             EEEEcCCeeE--EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEE
Q psy2775          89 VVAKNREGEA--KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH  166 (785)
Q Consensus        89 C~a~~~~~~~--~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~  166 (785)
                      |.|.|..|..  ...+.|.|.. .+..|.+.        ..+..+.|.|.+.|.|++.|+|++||..+....        
T Consensus        78 C~~~n~~g~~~~~~~~~l~V~~-~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~--------  140 (176)
T 1hng_A           78 VTVYSTNGTRILNKALDLRILE-MVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLR--------  140 (176)
T ss_dssp             EEEEETTCCEEEEEEEEEEEEC-CCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEES--------
T ss_pred             EEEEeCCCCEEEEEEEEEEEeC-CCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCC--------
Confidence            9999998876  5667777764 22234332        224569999999999999999999998875431        


Q ss_pred             EEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       167 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      .+.|.++..+|+|.|+|.|.|..|..+....|.+
T Consensus       141 ~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          141 QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SSEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             cEEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            1456678899999999999999998888776654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.82  E-value=1.5e-19  Score=173.92  Aligned_cols=174  Identities=16%  Similarity=0.183  Sum_probs=126.3

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--Ec------------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--PL------------QETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      .+...|..+.+.+|++++|.|.+.+.|.+.|.|++++.  .+            ....++.+...+    ...+|+|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v   78 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG----TDFTLSINSV   78 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESSC
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCC----CEEEEEECCC
Confidence            45667889999999999999999998888999998532  11            111344443322    1246999999


Q ss_pred             CCCCCeEEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEEEeECCEEccc
Q psy2775          80 KKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKD  156 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W~~~g~~~~~  156 (785)
                      +.+|+|.|+|.|.|..+.... ...|.|.. ...+|.+...........|+.+.|.|.+.| .|++ .++|++||..+..
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  157 (213)
T 3d9a_L           79 ETEDFGMYFCQQSNSWPYTFGGGTKLEIKR-ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  157 (213)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECC-CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             ChhhCEEEEEeeecCCcceeCCCEEEEEec-CCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcc
Confidence            999999999999998765432 33566642 223666665444444457999999999987 5554 8999999998876


Q ss_pred             c-eEEE-----eCC----EEEEEEcccCCCCcEEEEEEEEcCCeeE
Q psy2775         157 R-QITS-----EKN----THTLTLIQCSTKDKGRYSVKVTNKEGTV  192 (785)
Q Consensus       157 ~-~~~~-----~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  192 (785)
                      . ....     .++    .++|.|.++..+|+|.|+|.|.|.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          158 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             TEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             eeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            5 1111     111    3489999999999999999999987553

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=9.1e-20  Score=178.94  Aligned_cols=220  Identities=13%  Similarity=0.087  Sum_probs=126.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .+|.|...|. ..|.+|++|+|.|.+.+ +.+.+.|+|++..+....   .............|.|.+++.+|+|.|+|.
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~---~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   80 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLH---LIGEHHDGVSKANFSIGPMMQDLAGTYRCY   80 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEE---EECBCCTTCEEEEEEECSCCTTTCEEEEEE
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcce---eeeeccCCCceEEEEeecCCcccCEEEEEe
Confidence            5788888886 77999999999999864 567899999986542210   100000111236699999999999999999


Q ss_pred             EEcCCe-----eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceE--E--E
Q psy2775          91 AKNREG-----EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI--T--S  161 (785)
Q Consensus        91 a~~~~~-----~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~--~--~  161 (785)
                      +.+...     ..+..+.|.|.. ...+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+.....  .  .
T Consensus        81 a~~~~~~~~~s~~S~~~~L~V~~-~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~  157 (257)
T 1b6u_A           81 GSVTHSPYQLSAPSDPLDIVITG-LYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVN  157 (257)
T ss_dssp             EECSSCTTSCCCCCCCEEEEEEC-SSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSS
T ss_pred             EeccCCCccccccCCCEEEeccc-CCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccC
Confidence            986421     223445666653 234667765544 467899999999998765 469999999987653211  1  1


Q ss_pred             eCCEEEEEEcccCCCCcEEEEEEEEcCCe-----eEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCC
Q psy2775         162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEG-----TVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP  236 (785)
Q Consensus       162 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  236 (785)
                      ......|.|.+++  |+|.|+|.|.+...     ..+..+.|.|...+                                
T Consensus       158 ~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p--------------------------------  203 (257)
T 1b6u_A          158 GTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP--------------------------------  203 (257)
T ss_dssp             SCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC--------------------------------
T ss_pred             CceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC--------------------------------
Confidence            1235789999998  99999999997532     22334566665332                                


Q ss_pred             eeeec-CCcceeCCCCeEEEEEEEccCCCCeEEEEECC
Q psy2775         237 SILEP-LHDVSITEGESAVLSVQVGGEPSPKVEWYKDG  273 (785)
Q Consensus       237 ~~~~~-~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~  273 (785)
                      .+..+ +.......|..+.|.|.+ |.+.+.|.|...+
T Consensus       204 ~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~  240 (257)
T 1b6u_A          204 SNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLD  240 (257)
T ss_dssp             --------------------------------------
T ss_pred             CCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhhhh
Confidence            11111 112235568889999887 5677889998754

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.82  E-value=1.9e-19  Score=174.50  Aligned_cols=178  Identities=17%  Similarity=0.175  Sum_probs=123.0

Q ss_pred             ccCCCeEEecCCcEEEEEEEeC-C-----CceEEEEECCEEccc---------------CCCEEEEEe---CcEEEEEEc
Q psy2775         420 VPLQDVKVSRDEKASFEIELTK-G-----DALVKWYKDGKEIAF---------------SENVTLSID---GKKQKLIIF  475 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~-~-----~~~i~W~~~~~~~~~---------------~~~~~~~~~---~~~~~L~i~  475 (785)
                      .++..+.+.+|+++.|.|.+.+ +     .+.+.|++++..+..               ..+..+..+   .....|.|.
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            3456677889999999999865 3     347999997643211               123333221   235689999


Q ss_pred             cCCCCCcEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         476 SAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      +++.+|+|.|+|.|.|.+.....+.|.|..++..                                              
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~----------------------------------------------  119 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISYGGADYKRITVKVNAPYNK----------------------------------------------  119 (222)
T ss_dssp             SCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCC----------------------------------------------
T ss_pred             CcccccCeEEEEEEEeCCCceeEEEEEEECCCCC----------------------------------------------
Confidence            9999999999999999666666788888865321                                              


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeC-CEEecCCCCeeEEee--CCeEEEEEccCCCCCCceeEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                         |...   ....+.+|+.++|.|.+.|+|.|.|.|+++ +..+...........  +....+.+..+.. +|+|.|+|
T Consensus       120 ---~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~-~d~g~Y~C  192 (222)
T 3sbw_C          120 ---INQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT-TTNEIFYC  192 (222)
T ss_dssp             ---CEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEEC-CTTCEEEE
T ss_pred             ---CCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEec-cCCcEEEE
Confidence               1110   122567899999999999999999999998 555543222111111  1111222224456 89999999


Q ss_pred             EEEcCCcceEEEEEEEEE
Q psy2775         633 VATNELGSATHGARVTVD  650 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~  650 (785)
                      .|.|..|....++.|.|.
T Consensus       193 ~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          193 TFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             EEEETTTTEEEEEEEECC
T ss_pred             EEEeCccceeeEEEEEec
Confidence            999999999998888876

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.82  E-value=3e-19  Score=171.51  Aligned_cols=176  Identities=14%  Similarity=0.111  Sum_probs=125.5

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecC---CCeeEEEECC--EEc------------cCCCCEEEeecCCccceEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNG--EPL------------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+.. |..+.+.+|++++|.|.+.+.|   .+.|.|++++  ..+            ....++.+...+    ....|+|
T Consensus         3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I   77 (212)
T 1q0x_L            3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG----DKAALTI   77 (212)
T ss_dssp             CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEET----TEEEEEE
T ss_pred             eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeC----CEEEEEE
Confidence            3556 8899999999999999998877   4789999863  221            112344433321    1256999


Q ss_pred             cccCCCCCeEEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCC--eEEEeECCEE
Q psy2775          77 KSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP--KVEWYKDGKL  153 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~--~v~W~~~g~~  153 (785)
                      .+++.+|+|.|+|.|.+..+... ....|.|......+|.+...........|+.+.|.|.+.|.+++  .|+|++||..
T Consensus        78 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  157 (212)
T 1q0x_L           78 TGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTP  157 (212)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEe
Confidence            99999999999999999876432 33456665433356777654444445679999999999885433  8999999998


Q ss_pred             cccceE----E-EeC----CEEEEEEcccCCCCcEEEEEEEEcCCeeEEE
Q psy2775         154 IKDRQI----T-SEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVES  194 (785)
Q Consensus       154 ~~~~~~----~-~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  194 (785)
                      +.....    . ..+    ....|.|.....+|+|.|+|.|.|.......
T Consensus       158 l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          158 VTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK  207 (212)
T ss_dssp             ECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence            865421    1 111    1346899999999999999999998765443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.82  E-value=1.3e-19  Score=167.24  Aligned_cols=161  Identities=19%  Similarity=0.335  Sum_probs=120.6

Q ss_pred             CcccccCCCeEEecCCcEEEEEEEeCC--CceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecC
Q psy2775         416 PEISVPLQDVKVSRDEKASFEIELTKG--DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG  493 (785)
Q Consensus       416 ~~~~~~~~~~~v~~g~~~~l~C~~~~~--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g  493 (785)
                      |.+...+....+.+|+.+.|.|.+.+.  .+.+.|++++..+.....          .+.+.+++.+|+|.|+|.|.|. 
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~-   73 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQT-   73 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETTS-
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeCC-
Confidence            444455666678999999999999884  568999999999865432          3667789999999999999984 


Q ss_pred             cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeec
Q psy2775         494 DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEK  573 (785)
Q Consensus       494 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g  573 (785)
                      .....+.|.|..++.                                                    +. ......+.+|
T Consensus        74 ~~s~~~~l~v~~~~~----------------------------------------------------~~-~~~~~~~~~g  100 (170)
T 3ry4_A           74 SLSDPVHLTVLFEWL----------------------------------------------------VL-QTPHLEFQEG  100 (170)
T ss_dssp             BCCCCEEEEEECCSE----------------------------------------------------EE-ECSCSEECTT
T ss_pred             CceEeEEEEEECCce----------------------------------------------------Ee-cCCCceeecC
Confidence            233456777766421                                                    11 1113467889


Q ss_pred             CeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc-eEEEEEEEE
Q psy2775         574 GTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS-ATHGARVTV  649 (785)
Q Consensus       574 ~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V  649 (785)
                      +.++|.|.+ .|.|.+.+.|+|+|..+..        ......|.|.++.. +|+|.|+|.|.|..|. ....+.|.|
T Consensus       101 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--------~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          101 ETIMLRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSIPQANH-SHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             CCEEEEEEEGGGCCEEEEEEEETTEEEEE--------ESSCCEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEECCCCCCCceEEEEECCeEccc--------cCCCCeEEEEeccc-cCCEEEEEEEEeCcCccccccEEEEE
Confidence            999999999 4567789999999988642        22345699999999 9999999999999996 333345544

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.82  E-value=1e-19  Score=174.71  Aligned_cols=177  Identities=17%  Similarity=0.182  Sum_probs=129.2

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEcc------------CCCCEEEeecCCccceEEEEEEcc
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPLQ------------ETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      |.+...| .+.+.+|++++|.|.+.  +.+.+.|+++  +..+.            ...++.+....    ...+|+|.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~   74 (211)
T 3tv3_L            2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSG----NTASLTVSG   74 (211)
T ss_dssp             -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEEES
T ss_pred             ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccC----CEEEEEECC
Confidence            4566667 89999999999999987  8889999994  22111            22344433321    235699999


Q ss_pred             cCCCCCeEEEEEEEcCCe--eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccC--CCeEEEeECCEEc
Q psy2775          79 IKKREEGVYTVVAKNREG--EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP--SPKVEWYKDGKLI  154 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~--~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p--~~~v~W~~~g~~~  154 (785)
                      ++.+|+|.|+|.|.+..+  .......|.|......+|.+...+....+..|+.+.|.|.+.|.+  .+.+.|++||..+
T Consensus        75 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  154 (211)
T 3tv3_L           75 LQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV  154 (211)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             CChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeec
Confidence            999999999999999877  344456677764444677777665555555899999999998853  4799999999988


Q ss_pred             ccceE-----EEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE
Q psy2775         155 KDRQI-----TSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  196 (785)
Q Consensus       155 ~~~~~-----~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  196 (785)
                      .....     ...++    ...|.|.++..+|+|.|+|.|.|..+....++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          155 KAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             CTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            65311     11111    25799999999999999999999987665543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.82  E-value=1.9e-19  Score=173.91  Aligned_cols=178  Identities=18%  Similarity=0.220  Sum_probs=125.9

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECC---EE--c---c----------CCCCEEEeecCCccceEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNG---EP--L---Q----------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~---~~--~---~----------~~~~~~~~~~~~~~~~~~~   73 (785)
                      |.+...| .+.+.+|++++|.|.+.+. |.+.+.|+++.   ..  +   .          ...++.+...    ....+
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~   76 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSS----GADRY   76 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEE----TTEEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecC----CceEE
Confidence            5677777 9999999999999999998 88999999832   10  0   0          0123333321    12356


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCe-----eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEE
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREG-----EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVE  146 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~-----~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~  146 (785)
                      |+|.+++.+|+|.|+|.|.+..+     .......|.|......+|.+...........|+.+.|.|.+.| .|.+ .|+
T Consensus        77 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~  156 (218)
T 3s96_B           77 LSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVA  156 (218)
T ss_dssp             EEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEE
Confidence            99999999999999999998765     2233456777654445677766445555667899999999987 5666 899


Q ss_pred             EeECCEEcccceE----EEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE
Q psy2775         147 WYKDGKLIKDRQI----TSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESA  195 (785)
Q Consensus       147 W~~~g~~~~~~~~----~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  195 (785)
                      |++||..+.....    ...++    ...|.|.....+|+|.|+|.|.|..+..+.+
T Consensus       157 W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          157 WKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             EEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             EEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            9999998865210    00111    2348888888899999999999998765543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.82  E-value=7.5e-20  Score=183.05  Aligned_cols=182  Identities=13%  Similarity=0.232  Sum_probs=125.5

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEE---ecCCCeeEEEECCEEccCC------------------CCEEEeecCCccc
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLV---AVPEPDLLWYYNGEPLQET------------------DEVVFSDQSDMHS   69 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~---g~p~~~i~W~~~~~~~~~~------------------~~~~~~~~~~~~~   69 (785)
                      ..+.+...+..+.+.+|++++|.|.+.   +.+.+.|.|++++......                  .+..+..+..  .
T Consensus         4 g~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~   81 (268)
T 3mj6_A            4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTF--H   81 (268)
T ss_dssp             --------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTT--T
T ss_pred             cccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCC--C
Confidence            346677788889999999999999997   6677889999965432211                  2333221111  1


Q ss_pred             eEEEEEEcccCCCCCeEEEEEEEcCCee--EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE---eccCCCe
Q psy2775          70 YVSIVTIKSIKKREEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV---GGEPSPK  144 (785)
Q Consensus        70 ~~~~L~i~~~~~~D~G~Y~C~a~~~~~~--~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~---~g~p~~~  144 (785)
                      ...+|.|.+++.+|+|.|+|.|.+..+.  ....+.|.|..   .      .+....+.+|+.+.|.|.+   .+.|.+.
T Consensus        82 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~---~------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~  152 (268)
T 3mj6_A           82 NDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP---E------EPRDLRVRVGDTTQMRCSIQSTEEKRVTK  152 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC---C------CCSEEEEETTCCEEECCBCEESSSSCCCE
T ss_pred             CEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec---c------CCCccccccCCcEEEEEEecCCCCCCccc
Confidence            1245999999999999999999986543  34445555541   1      2246778899999999999   5668899


Q ss_pred             EEEeE-CCEEcccce----------------------EEE----eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEE
Q psy2775         145 VEWYK-DGKLIKDRQ----------------------ITS----EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN  197 (785)
Q Consensus       145 v~W~~-~g~~~~~~~----------------------~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  197 (785)
                      +.|++ ++..+....                      ...    .....+|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus       153 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~  232 (268)
T 3mj6_A          153 VNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV  232 (268)
T ss_dssp             EEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEE
Confidence            99999 332221110                      000    123568999999999999999999999999888899


Q ss_pred             EEeecC
Q psy2775         198 LNVDPY  203 (785)
Q Consensus       198 l~V~~~  203 (785)
                      |.|...
T Consensus       233 l~V~~~  238 (268)
T 3mj6_A          233 LHVVQD  238 (268)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            988644

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.82  E-value=5.1e-20  Score=172.44  Aligned_cols=165  Identities=17%  Similarity=0.217  Sum_probs=124.0

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEEECCEE--ccC------------CCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEP--LQE------------TDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ..+.+.+|++++|.|.+.+.|.+.+.|++++..  +..            ..+..+... .......+|.|.+++.+|+|
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~L~i~~v~~~D~G   81 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS-LWDQGNFPLIIKNLKIEDSD   81 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGG-GGGGTBCCEEECSCCGGGCE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccc-cccCCeEEEEEecCCHHHCE
Confidence            457899999999999998888899999999853  211            111211110 00111245999999999999


Q ss_pred             EEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCE
Q psy2775          86 VYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT  165 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  165 (785)
                      .|+|.+.+..+    .+.|.|..       +.. +....+.+|+.+.|.|.+.+.|.+.+.|+++|..+.       ...
T Consensus        82 ~Y~C~~~~~~~----~~~l~V~~-------~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------~~~  142 (184)
T 2ny1_B           82 TYICEVEDQKE----EVQLLVFG-------LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------QGG  142 (184)
T ss_dssp             EEEEEETTEEE----EEEEEEEE-------EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-------EES
T ss_pred             EEEEEEEcCCC----cEEEEEEE-------ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-------cCc
Confidence            99999998754    33444431       112 234577899999999999889999999999986552       123


Q ss_pred             EEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCC
Q psy2775         166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE  204 (785)
Q Consensus       166 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  204 (785)
                      .+|.|.+++.+|+|.|+|.|.|..+..+..+.|.|.+.+
T Consensus       143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence            479999999999999999999999999999999998653

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.81  E-value=2.2e-19  Score=172.21  Aligned_cols=171  Identities=12%  Similarity=0.176  Sum_probs=122.6

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EEc------------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPL------------QETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      .|.. |..+.+.+|++++|.|.+.+.|.+.|.|++++  ..+            ....++.+...+    ....|+|.++
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v   77 (210)
T 1lk3_L            3 VLTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG----TDFTLTIDPV   77 (210)
T ss_dssp             CEEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSC
T ss_pred             cEEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecC----CEEEEEECCC
Confidence            3555 88999999999999999999888899999843  211            112344433221    1246999999


Q ss_pred             CCCCCeEEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeECCEEccc
Q psy2775          80 KKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGKLIKD  156 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~~g~~~~~  156 (785)
                      +.+|+|.|+|.|.|..+.... ...|.|.. ...+|.+...........|+.+.|.|.+.|. |++ .|.|++||..+..
T Consensus        78 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~  156 (210)
T 1lk3_L           78 EADDTAIYFCQQSWNGPLTFGAGTKLELKR-ADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRD  156 (210)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECC-CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCT
T ss_pred             CHHHCeEEEEEEEcCCCceeCCCEEEEEcC-CCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCC
Confidence            999999999999988764332 33566643 2235666654443345589999999999874 443 8999999998875


Q ss_pred             c-eEE----E-eCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         157 R-QIT----S-EKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       157 ~-~~~----~-~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      . ...    . .++    .++|.|.++..+|+|.|+|.|.|...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          157 GVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             TEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            5 111    1 111    24799999999999999999999875

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.81  E-value=1.2e-19  Score=174.55  Aligned_cols=174  Identities=14%  Similarity=0.182  Sum_probs=124.5

Q ss_pred             ccCCCeEEecCCcEEEEEEEeC-CCceEEEEECC--EEc------------ccCCCEEEEEeCcEEEEEEccCCCCCcEE
Q psy2775         420 VPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG--KEI------------AFSENVTLSIDGKKQKLIIFSAGLEDAGE  484 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  484 (785)
                      ..+..+.+.+|++++|.|.+.+ +.+.+.|+|++  ..+            ....++.+..++....|.|.+++.+|+|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   85 (213)
T 3d9a_L            6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEE
Confidence            3456778999999999999988 56789999853  211            11256777767777899999999999999


Q ss_pred             EEEEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEe
Q psy2775         485 YSCRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI  562 (785)
Q Consensus       485 Y~C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~  562 (785)
                      |+|.|.|. +.. ...+.|.|.....                                                 +|.+.
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------------~p~v~  116 (213)
T 3d9a_L           86 YFCQQSNSWPYTFGGGTKLEIKRADA-------------------------------------------------APTVS  116 (213)
T ss_dssp             EEEEECSSSSCEECCCEEEEECCCCB-------------------------------------------------CCEEE
T ss_pred             EEEeeecCCcceeCCCEEEEEecCCC-------------------------------------------------CceeE
Confidence            99999996 432 2345677754310                                                 13333


Q ss_pred             eeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCC-CC-eeEEee-CC----eEEEEEccCCCCCCceeEEEE
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSS-PK-KREIFD-GE----NIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~-~~-~~~~~~-~~----~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      .......+.+|+.++|.|.+.| .|+| .|+|+|+|..+..+ .. ...... ++    .++|.|.++.. +|+|.|+|.
T Consensus       117 ~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~  195 (213)
T 3d9a_L          117 IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCE  195 (213)
T ss_dssp             EECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HHCCEEEEE
T ss_pred             eECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEecccc-CCCCEEEEE
Confidence            3222333457999999999998 6666 89999999998655 11 111111 11    34899999998 999999999


Q ss_pred             EEcCCcceEE
Q psy2775         634 ATNELGSATH  643 (785)
Q Consensus       634 a~n~~g~~~~  643 (785)
                      |.|.......
T Consensus       196 a~n~~~~~~~  205 (213)
T 3d9a_L          196 ATHKTSTSPI  205 (213)
T ss_dssp             EECTTCSSCE
T ss_pred             EEEccCCCce
Confidence            9999876533

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.81  E-value=4.1e-20  Score=172.90  Aligned_cols=152  Identities=16%  Similarity=0.266  Sum_probs=111.9

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcc-cCCCCCeEEEEEEEcCCee
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKS-IKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~D~G~Y~C~a~~~~~~   97 (785)
                      +....+.+|++++|.|.+.+ +. .|.|+|++..+.....             .+|.|.+ ++.+|+|.|+|.|.|..|.
T Consensus         6 ~~~~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~~-------------~~L~I~~~~~~~D~G~Y~C~a~n~~g~   70 (186)
T 1jbj_A            6 IEYKVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKHD-------------KHLVLQDFSEVEDSGYYVCYTPASNKN   70 (186)
T ss_dssp             CCCEEEEETTEEEEECSSCC-CT-TCEEEETTEEECSCCC-------------SEEEEESCCTTTSCEEEEEECSSCCCC
T ss_pred             eEEEEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCCC-------------CEEEECCCCccccCEEEEEEEEeCCCc
Confidence            33445578999999999977 44 4999999998866411             1499999 9999999999999999887


Q ss_pred             EEEEeeEEEeCCCCCC--------------CceecCC----Cc---eEeccCCcEEEEEEEeccCCCeEEEeECCEEccc
Q psy2775          98 AKMDIPVKVNTGKPEK--------------PSILEPL----HD---VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD  156 (785)
Q Consensus        98 ~~~~~~v~v~~~~~~~--------------p~i~~~~----~~---~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~  156 (785)
                      ....+.+.|....+..              |.+....    ..   ..+.+|+.+.|.|.+   |.+.|+|+|||..+..
T Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~  147 (186)
T 1jbj_A           71 TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISP  147 (186)
T ss_dssp             CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCC
T ss_pred             EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcc
Confidence            5555555443211111              1111000    01   234489999999988   7889999999999864


Q ss_pred             ceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeE
Q psy2775         157 RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV  192 (785)
Q Consensus       157 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  192 (785)
                      ..    ....+|.|.++..+|+|.|+|.|.|..|..
T Consensus       148 ~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          148 LN----ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SS----CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cC----CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            32    234579999999999999999999998765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.81  E-value=4.6e-20  Score=172.46  Aligned_cols=162  Identities=15%  Similarity=0.105  Sum_probs=122.6

Q ss_pred             CCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       110 ~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      ...+|.|...+.. .+.+|+.++|.|.+.+ +.+.+.|+|+|...       ......|.|.+++.+|+|.|+|.|.|..
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   75 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------YQDQAVLFIPAMKRSLAGRYRCSYQNGS   75 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC-------EESSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc-------cCcccEEEECcCChhhCceEEEEEEcCC
Confidence            3467777766654 7899999999999987 77899999998761       1234479999999999999999999987


Q ss_pred             eeE--EEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeE
Q psy2775         190 GTV--ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKV  267 (785)
Q Consensus       190 g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v  267 (785)
                      |..  +..+.|.|....                             .+|.+...+ ...+.+|+.++|.|.+.+.| +.+
T Consensus        76 g~~~~s~~~~l~V~~~~-----------------------------~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~  124 (184)
T 2gi7_A           76 LWSLPSDQLELVATGVF-----------------------------AKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQF  124 (184)
T ss_dssp             EEBCCCCCEEEEEESSS-----------------------------CCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEE
T ss_pred             CccCCCCCEEEEecCcC-----------------------------CCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEE
Confidence            632  234666665322                             345565554 45678999999999987654 699


Q ss_pred             EEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy2775         268 EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG  312 (785)
Q Consensus       268 ~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g  312 (785)
                      .|+++|..+.... ........|.|.+++.+|+|.|+|.|.|..+
T Consensus       125 ~w~k~g~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          125 ALYKEGDPAPYKN-PERWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEEECCCCTTSCC-CCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EEEECCCcCccee-cCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            9999998775311 1122345799999999999999999999754

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=4.5e-20  Score=172.86  Aligned_cols=157  Identities=13%  Similarity=0.194  Sum_probs=118.8

Q ss_pred             CeEEecCCcEEEEEEEeC-CCceEEEEECCEE--ccc------------CCCEEEEE---eCcEEEEEEccCCCCCcEEE
Q psy2775         424 DVKVSRDEKASFEIELTK-GDALVKWYKDGKE--IAF------------SENVTLSI---DGKKQKLIIFSAGLEDAGEY  485 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~--~~~------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y  485 (785)
                      .+.+.+|++++|.|.+.+ +.+.+.|++++..  +..            ..+.....   ......|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            456789999999999986 5678999999863  211            11222211   11245699999999999999


Q ss_pred             EEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeee
Q psy2775         486 SCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF  565 (785)
Q Consensus       486 ~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~  565 (785)
                      +|.|.|.   ...+.|.|....                                                        .+
T Consensus        84 ~C~~~~~---~~~~~l~V~~~~--------------------------------------------------------~~  104 (184)
T 2ny1_B           84 ICEVEDQ---KEEVQLLVFGLT--------------------------------------------------------AN  104 (184)
T ss_dssp             EEEETTE---EEEEEEEEEEEE--------------------------------------------------------ES
T ss_pred             EEEEEcC---CCcEEEEEEEec--------------------------------------------------------CC
Confidence            9999984   335666665321                                                        01


Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      ....+.+|++++|.|.+.|.|.|.+.|++++..+.          ....+|.|.++.. +|+|.|+|.|.|..|....++
T Consensus       105 ~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~----------~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~~~~  173 (184)
T 2ny1_B          105 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI----------QGGKTLSVSQLEL-QDSGTWTCTVLQNQKKVEFKI  173 (184)
T ss_dssp             SCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE----------EESSEEEESSCCG-GGCEEEEEEEEETTEEEEEEE
T ss_pred             CCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc----------cCceEEEEecCCc-CCCeEEEEEEEECCceEEEEE
Confidence            13467899999999999999999999999876541          2335699999999 999999999999999888888


Q ss_pred             EEEEE
Q psy2775         646 RVTVD  650 (785)
Q Consensus       646 ~l~V~  650 (785)
                      .|.|.
T Consensus       174 ~l~V~  178 (184)
T 2ny1_B          174 DIVVL  178 (184)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87776

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.81  E-value=2e-20  Score=175.06  Aligned_cols=165  Identities=15%  Similarity=0.239  Sum_probs=110.5

Q ss_pred             EEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEcc-CCCCCcEEEEEEEeec-CcceeEEEEEE
Q psy2775         426 KVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS-AGLEDAGEYSCRVGDT-GDKESKATLTV  503 (785)
Q Consensus       426 ~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~-g~~~~~~~l~V  503 (785)
                      ....|+++.|.|.+.+ .+.|.|+|+|..+.....         ..|.|.+ ++.+|+|.|+|.|.|. |.......+.|
T Consensus        10 v~~~G~~v~L~C~~~~-~~~i~W~k~g~~l~~~~~---------~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DENLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEEETTEEEEECSSCC-CTTCEEEETTEEECSCCC---------SEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EEeCCcEEEEEEeCCC-CCceEEEECCEECCCCCC---------CEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            3468999999999987 445999999999865421         2699999 9999999999999997 66444444444


Q ss_pred             EcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEee---eeeeeeeeecCeEEEEE
Q psy2775         504 EAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIE---RFEEKTVKEKGTIRLMA  580 (785)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~---~~~~~~v~~g~~v~l~C  580 (785)
                      ........  .+...     ...    ....                   .+...|....   ......+.+|++++|.|
T Consensus        80 ~~~~~~~~--~~~~~-----~~~----~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C  129 (186)
T 1jbj_A           80 GSADDAKK--DAAKK-----DDA----KKDD-------------------AKKDGSQTNKAKNLVQVDGSRGDGSVLLTC  129 (186)
T ss_dssp             CSCCCCCC--CCCCC-----CCC----SCCS-------------------SSTTCCSCCCCSSCCEECCCSSSCEEEEEC
T ss_pred             eccccccc--ccccc-----ccc----ccCC-------------------ccccccccccccccccceecCCCCeEEEEe
Confidence            33211000  00000     000    0000                   0000000000   00112456999999999


Q ss_pred             EEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       581 ~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .+   |.|.|+|+|||..+.....       ...+|.|.++.. +|+|.|+|.|.|..|..
T Consensus       130 ~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          130 GL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAK-DPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTS-CCEEEEEEEESSCEEEE
T ss_pred             eC---CCCeEEEEECCEECcccCC-------CcceEEECCCCc-CcCEEEEEEEEcCcCCc
Confidence            98   8899999999999864322       345699999999 99999999999999876

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.81  E-value=8.5e-20  Score=176.25  Aligned_cols=180  Identities=17%  Similarity=0.142  Sum_probs=125.2

Q ss_pred             cCCCeEEecCCcEEEEEEEeC-CCc---eEEEEECCEEcccC------------------CCEEEEE---eCcEEEEEEc
Q psy2775         421 PLQDVKVSRDEKASFEIELTK-GDA---LVKWYKDGKEIAFS------------------ENVTLSI---DGKKQKLIIF  475 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~-~~~---~i~W~~~~~~~~~~------------------~~~~~~~---~~~~~~L~i~  475 (785)
                      .+..+.+.+|++++|.|.+.+ +.+   .|.|+|++..+...                  .++.+..   .....+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            345678899999999999987 333   48999987543211                  1111110   1123469999


Q ss_pred             cCCCCCcEEEEEEEeec-Ccce-eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         476 SAGLEDAGEYSCRVGDT-GDKE-SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~-g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      +++.+|+|.|.|.+.|. +... ....+.+..++                                              
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  118 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP----------------------------------------------  118 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC----------------------------------------------
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeec----------------------------------------------
Confidence            99999999999999986 3332 33334443332                                              


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEE-eeCCeEEEEEccCCCCCCceeEEE
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~-~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                           +..........+..|+.+.|.|.+.|.|+|.|+|+|++..+......... .....+.|.|.++.. +|+|.|+|
T Consensus       119 -----~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC  192 (218)
T 4frw_A          119 -----LPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRS-MNGQPLTC  192 (218)
T ss_dssp             -----CCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGG-GTTCEEEE
T ss_pred             -----cceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCH-HhCeEEEE
Confidence                 11222223456778999999999999999999999999877543221100 011245799999999 99999999


Q ss_pred             EEEcCCcceEEEEEEEEEee
Q psy2775         633 VATNELGSATHGARVTVDVE  652 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~~~  652 (785)
                      .|+|..|.....+++.|.|.
T Consensus       193 ~a~N~~g~~~~~~t~~v~V~  212 (218)
T 4frw_A          193 VVSHPGLLQDQRITHILHVS  212 (218)
T ss_dssp             EEECTTCSSCEEEEEECCEE
T ss_pred             EEEeCCCCeEEEEEEEEEEC
Confidence            99999999888888888753

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=2.8e-19  Score=174.21  Aligned_cols=183  Identities=13%  Similarity=0.084  Sum_probs=132.0

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..+|.|...|.. .|.+|++|+|.|.+.+ +...+.|+|++..+.....     ..........|.|.+++.+|+|.|+|
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~I~~v~~~DsG~Y~C   77 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSC   77 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEECSCCGGGCEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-----cccCCcceeEEEecCCCcccCeEEEE
Confidence            357889888887 8999999999999864 4568999999987541100     00011123569999999999999999


Q ss_pred             EEEcCCeeE--EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEE
Q psy2775          90 VAKNREGEA--KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT  167 (785)
Q Consensus        90 ~a~~~~~~~--~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  167 (785)
                      .+.+..+..  +..+.|.|.. ...+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+.. ..........
T Consensus        78 ~~~~~~~~s~~S~~~~L~V~~-~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~-~~~~~~~~~~  153 (242)
T 1p6f_A           78 IYRVGELWSEPSNLLDLVVTE-MYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-QRGYGKVQAE  153 (242)
T ss_dssp             EEEETTEECCCCCCEEEEEEC-CSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE-EEEECSSEEE
T ss_pred             EEecCCccccCCcceEEEeec-ccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc-cccCCCceEE
Confidence            998765432  3345566653 22356666554 4568899999999998754 469999999987654 2234456778


Q ss_pred             EEEcccCCCCcEEEEEEEEcCC---eeEEEEEEEEeecC
Q psy2775         168 LTLIQCSTKDKGRYSVKVTNKE---GTVESAANLNVDPY  203 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~  203 (785)
                      |.|.+++.+|+|.|+|.|.|..   ...+..+.|.|...
T Consensus       154 l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          154 FPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             EEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             EEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            9999999999999999999864   12334577777654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.81  E-value=5.5e-19  Score=171.15  Aligned_cols=181  Identities=16%  Similarity=0.216  Sum_probs=125.0

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC-----CeeEEEECCEEccC---------------CCCEEEeecCCccceEEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE-----PDLLWYYNGEPLQE---------------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~-----~~i~W~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..++..+.+.+|++++|.|.+.+.|.     +.+.|++++..+..               ..+..+..+. ......+|+
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~-~~~~~~~L~   83 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ-LSLGNAALQ   83 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHH-HTTTEEEEE
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEcccc-ccCCEEEEE
Confidence            34567789999999999999977663     48999997643210               1233322110 011235799


Q ss_pred             EcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeEC-CEEc
Q psy2775          76 IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLI  154 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~-g~~~  154 (785)
                      |.+++.+|+|.|+|.|.+ .+.....+.|.|.. ++..|.+.   ....+..|+.+.|.|.+.|.|.+.+.|+++ |..+
T Consensus        84 I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~-~~~~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~  158 (222)
T 3sbw_C           84 ITDVKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL  158 (222)
T ss_dssp             ESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEB-CCCCCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             EcCcccccCeEEEEEEEe-CCCceeEEEEEEEC-CCCCCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCcee
Confidence            999999999999999999 56666677788863 11122211   112567899999999999999999999998 6665


Q ss_pred             ccceEE--EeCCE---EEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeec
Q psy2775         155 KDRQIT--SEKNT---HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP  202 (785)
Q Consensus       155 ~~~~~~--~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  202 (785)
                      ......  .....   ....+..+..+|.|.|+|.|.|..|.....+.|.|..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          159 SGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             CCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             cCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            543211  11111   1122224567899999999999999999999998864

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=8.9e-19  Score=172.71  Aligned_cols=185  Identities=14%  Similarity=0.211  Sum_probs=129.0

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEc-----------------cCCCCEEEeecCCccceEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPL-----------------QETDEVVFSDQSDMHSYVS   72 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~   72 (785)
                      .+.. |..+.+.+|++++|.|.+.|.|  .+.|.|++++  ..+                 ....++.+..+...  ...
T Consensus         5 ~v~~-p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~   81 (247)
T 2ghw_B            5 QLVQ-SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSK--NTL   81 (247)
T ss_dssp             EEEE-ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTT--TEE
T ss_pred             EEEe-cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCC--CEE
Confidence            3444 4569999999999999999887  5789999843  110                 11235554433211  235


Q ss_pred             EEEEcccCCCCCeEEEEEEEcCCeeE--EEEeeEEEeCCC-----------CCCCceecCCCceEeccCCcEEEEEEEec
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNREGEA--KMDIPVKVNTGK-----------PEKPSILEPLHDVSITEGESAVLSVQVGG  139 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~~~~~--~~~~~v~v~~~~-----------~~~p~i~~~~~~~~~~~G~~v~l~C~~~g  139 (785)
                      +|+|.+++.+|+|.|+|.|.|..+..  .....|.|....           ..+|.+...+....+.+|+.+.|.|.+.+
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~  161 (247)
T 2ghw_B           82 YLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQ  161 (247)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESS
T ss_pred             EEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCC
Confidence            69999999999999999999874332  223466665321           13455666667788999999999999999


Q ss_pred             cCCCeEEEeE--CCEEcc-------------cce--EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE-EEEEEEee
Q psy2775         140 EPSPKVEWYK--DGKLIK-------------DRQ--ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANLNVD  201 (785)
Q Consensus       140 ~p~~~v~W~~--~g~~~~-------------~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  201 (785)
                      .|.+.+.|+|  +|..+.             ...  ........+|+|.+++.+|+|.|+|.|.|...... ....|.|.
T Consensus       162 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          162 SVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            8888999999  555431             011  11234567899999999999999999998643322 34566664

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.81  E-value=1.5e-19  Score=173.60  Aligned_cols=177  Identities=16%  Similarity=0.183  Sum_probs=127.6

Q ss_pred             ccccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--CEEcc------------cCCCEEEEEeCcEEEEEEccCCCCCcE
Q psy2775         418 ISVPLQDVKVSRDEKASFEIELTKGDALVKWYKD--GKEIA------------FSENVTLSIDGKKQKLIIFSAGLEDAG  483 (785)
Q Consensus       418 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G  483 (785)
                      +..++ ...+.+|++++|.|.+. +.+.+.|+|+  +..+.            ...++.+........|+|.+++.+|+|
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   81 (211)
T 3tv3_L            4 LTQPP-SASGSPGQSITISCTGT-SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA   81 (211)
T ss_dssp             CBCCS-EEEECTTCEEEEEEECC-CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             EEeCc-eEEEcCCCCEEEEEEEC-CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence            34445 77889999999999999 8889999994  22211            235666666677789999999999999


Q ss_pred             EEEEEEeec-C--cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCe
Q psy2775         484 EYSCRVGDT-G--DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL  560 (785)
Q Consensus       484 ~Y~C~a~n~-g--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~  560 (785)
                      .|+|.|.|. +  .....+.|.|...+.                                                .+|.
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------------~~P~  113 (211)
T 3tv3_L           82 VYYCGSLVGNWDVIFGGGTKLTVLGQPK------------------------------------------------AAPS  113 (211)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEECCSCC------------------------------------------------BCCE
T ss_pred             EEEEEEecCCCceeECCCceEEEeCCCC------------------------------------------------cCCe
Confidence            999999997 4  244456777763210                                                1244


Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCC--CCceEEEeCCEEecCCCCee--EEeeCC----eEEEEEccCCCCCCceeEEE
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNNKPLLSSPKKR--EIFDGE----NIILELKEADSETDAGDYKV  632 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~~~i~~~~~~~--~~~~~~----~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      +...+....+.+|+.++|.|.+.|.+  .+.+.|+|+|..+..+....  ....++    ...|.|.++.. +|+|.|+|
T Consensus       114 v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~Y~C  192 (211)
T 3tv3_L          114 VTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQW-KSHRSYSC  192 (211)
T ss_dssp             EEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHH-HHSSCEEE
T ss_pred             eEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHh-CCCCeEEE
Confidence            44444444555899999999999963  46899999999986532111  111112    25699999888 89999999


Q ss_pred             EEEcCCcceEEEE
Q psy2775         633 VATNELGSATHGA  645 (785)
Q Consensus       633 ~a~n~~g~~~~~~  645 (785)
                      .|.|..|...+++
T Consensus       193 ~v~~~~~~~~~~~  205 (211)
T 3tv3_L          193 QVTHEGSTVEKTV  205 (211)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEEECCCCEEeec
Confidence            9999998766544

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.81  E-value=3.8e-19  Score=169.00  Aligned_cols=169  Identities=12%  Similarity=0.081  Sum_probs=121.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+.......... .  ......|+|.+++.+|+|.|+|.
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~-~--~~~~~~l~I~~v~~~D~G~Y~C~   81 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHH-D--GVSKANFSISRMTQDLAGTYRCY   81 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEE-T--TEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecC-C--CCceEEEEeccCCcccCeEEEEe
Confidence            5788888886 78999999999999864 778999999987553211100000 0  11235699999999999999999


Q ss_pred             EEcCCe-----eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce--EEEeC
Q psy2775          91 AKNREG-----EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ--ITSEK  163 (785)
Q Consensus        91 a~~~~~-----~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~  163 (785)
                      +.+...     ..+..+.|.|.. ...+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+....  .....
T Consensus        82 a~~~~~~~~~~~~s~~~~l~V~~-~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~  158 (201)
T 1nkr_A           82 GSVTHSPYQVSAPSDPLDIVIIG-LYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN  158 (201)
T ss_dssp             EEBTTBTTCCCCCCCCEEEEEEC-SSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET
T ss_pred             EecCCCCccccCCCCCEEEEeec-cCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccC
Confidence            986431     223445666653 234567765544 46889999999999875 567999999998775432  11111


Q ss_pred             --CEEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         164 --NTHTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       164 --~~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                        ....|.|.+++  |+|.|+|.|.+..
T Consensus       159 ~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          159 GTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             TEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             CceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence              25689999998  9999999998764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.81  E-value=1.1e-18  Score=172.57  Aligned_cols=182  Identities=13%  Similarity=0.180  Sum_probs=128.9

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEc---c--------------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPL---Q--------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~---~--------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ...|..+.+.+|++++|.|.+.+.|  .+.|.|++++  ..+   .              ...++.+..+...  ...+|
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~~L   81 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPS--STAYM   81 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTT--TEEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCC--CEEEE
Confidence            3456779999999999999998875  5789999942  211   0              1234544432211  13569


Q ss_pred             EEcccCCCCCeEEEEEEEcCCee-----EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCC-----e
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGE-----AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-----K  144 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~-----~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~-----~  144 (785)
                      +|.+++.+|+|.|+|.|.+..+.     ....+.|.|.    .+|.+...+....+.+|+.++|.|.+.+.|.+     .
T Consensus        82 ~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~----~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           82 QLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS----SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             EECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC----CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             EECcCChhhCEEEEEEEeeccCccceeEEcCceeeeec----ccccEEecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence            99999999999999999998552     2233566665    45667666777889999999999999887764     9


Q ss_pred             EEEeE--CCEEcc-------------cc--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeE-EEEEEEEeecC
Q psy2775         145 VEWYK--DGKLIK-------------DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV-ESAANLNVDPY  203 (785)
Q Consensus       145 v~W~~--~g~~~~-------------~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  203 (785)
                      +.|+|  +|..+.             ..  .........+|.|.+++.+|+|.|+|.|.+..... .....|.|...
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence            99999  665431             01  11223456789999999999999999998854322 23466777643

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.80  E-value=6e-19  Score=168.96  Aligned_cols=171  Identities=17%  Similarity=0.278  Sum_probs=127.7

Q ss_pred             ceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceE-------------------EEeCCEEEEEEcccCCCCcEEEE
Q psy2775         122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI-------------------TSEKNTHTLTLIQCSTKDKGRYS  182 (785)
Q Consensus       122 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~-------------------~~~~~~~~L~i~~~~~~d~G~Y~  182 (785)
                      ...+.+|+.+.|.|...+.+.+.+.|++++.......+                   .......+|.|.+++.+|+|.|+
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~   87 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEE
Confidence            45688999999999987788889999997643322111                   00111236999999999999999


Q ss_pred             EEEEcCC-eeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEcc
Q psy2775         183 VKVTNKE-GTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG  261 (785)
Q Consensus       183 C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g  261 (785)
                      |.+.+.. +.....+.|.|...+                             ..|.+......  +.+|+.+.|.|.+.+
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~-----------------------------~~p~i~~~~~~--~~~g~~v~l~C~~~~  136 (208)
T 3r4d_A           88 LDMTDENYRRTQATVRFHVHQPV-----------------------------TQPFLQVTNTT--VKELDSVTLTCLSND  136 (208)
T ss_dssp             EEEECSSCEEEEEEEEEEEECCC-----------------------------CCCEEEESCSS--CCTTCCEEEEEECSC
T ss_pred             EEEEcccCceeEEEEEEEeccCC-----------------------------CCCEEecCCce--EeeCCCEEEEEECCC
Confidence            9999985 566666778886432                             33555554433  889999999999988


Q ss_pred             CCCCeEEEEECCEEcc-cceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEE-EEEEEec
Q psy2775         262 EPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQ  324 (785)
Q Consensus       262 ~p~~~v~W~~~~~~l~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v~~  324 (785)
                      .| +.+.|++++..+. ...........+|.|.++..+|.|.|+|.|.|..|...+. +.|.|..
T Consensus       137 ~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~  200 (208)
T 3r4d_A          137 IG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF  200 (208)
T ss_dssp             TT-CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred             CC-CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence            66 7999999999887 2233334444689999999999999999999999886643 5666654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.80  E-value=1.7e-19  Score=176.04  Aligned_cols=179  Identities=18%  Similarity=0.293  Sum_probs=130.1

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC-CeeEEEECCEEcc---------CCCCE--EEe----------ecCCccceEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNGEPLQ---------ETDEV--VFS----------DQSDMHSYVSI   73 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~---------~~~~~--~~~----------~~~~~~~~~~~   73 (785)
                      ...|..+.+.+|+++.|.|.+.+.+. +.+.|++++....         ....+  .+.          ...+     ..
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~   78 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-----GR   78 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-----CC
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-----ce
Confidence            45678899999999999999998885 8999998654311         00001  111          1111     22


Q ss_pred             EEEcccCCCCCeEEEEEEEcCC-eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcE-EEEEEE-eccCCCeEEEeEC
Q psy2775          74 VTIKSIKKREEGVYTVVAKNRE-GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA-VLSVQV-GGEPSPKVEWYKD  150 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~-~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v-~l~C~~-~g~p~~~v~W~~~  150 (785)
                      |+|.+++.+|+|.|+|.|.+.. +.....+.|.|.. .+..|.+...+....+.+|+.+ .|.|.+ .+.|.+.+.|+++
T Consensus        79 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~  157 (231)
T 2pet_A           79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA-KPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN  157 (231)
T ss_dssp             EEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEB-CCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEET
T ss_pred             EEEcccCcccCceEEEEEEecCCCceEEEEEEEEEe-cCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEEC
Confidence            9999999999999999999987 7777788888874 3344677777677778899988 999999 8899999999999


Q ss_pred             CEEcccce-----EE--E----eCC-----EEEEEEcccCCCCcEEEEEEEEc-----CCee-EEEEEEEEe
Q psy2775         151 GKLIKDRQ-----IT--S----EKN-----THTLTLIQCSTKDKGRYSVKVTN-----KEGT-VESAANLNV  200 (785)
Q Consensus       151 g~~~~~~~-----~~--~----~~~-----~~~L~i~~~~~~d~G~Y~C~a~n-----~~g~-~~~~~~l~V  200 (785)
                      |..+....     ..  .    ...     .+.|.|.....+|.|.|+|.|.|     ..|. .+..+.|+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          158 GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             TEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             CccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            99876543     10  0    111     25688886667779999999999     4454 334455544

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.80  E-value=3.9e-19  Score=170.43  Aligned_cols=171  Identities=16%  Similarity=0.186  Sum_probs=121.1

Q ss_pred             CCCeEEecCCcEEEEEEEeC-CCceEEEEEC--CEEc------------ccCCCEEEEEeCcEEEEEEccCCCCCcEEEE
Q psy2775         422 LQDVKVSRDEKASFEIELTK-GDALVKWYKD--GKEI------------AFSENVTLSIDGKKQKLIIFSAGLEDAGEYS  486 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  486 (785)
                      +....+.+|++++|.|.+.+ +.+.+.|+++  +..+            ....++.+...+....|.|.+++.+|+|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            56778899999999999988 5678999984  2221            1135666666667789999999999999999


Q ss_pred             EEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeee
Q psy2775         487 CRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER  564 (785)
Q Consensus       487 C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~  564 (785)
                      |.|.|. +.. .....|.|.....                                                 +|.+...
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------------~P~v~~~  117 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADA-------------------------------------------------APTVSIF  117 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCB-------------------------------------------------CCEEEEE
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCc-------------------------------------------------CCeEEEE
Confidence            999996 422 2245677754310                                                 1333332


Q ss_pred             eeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCC-CC-eeEEe-eCC----eEEEEEccCCCCCCceeEEEEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS-PK-KREIF-DGE----NIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~-~~-~~~~~-~~~----~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      .....+.+|+.++|.|.+.|. |++ .|.|+|+|..+..+ .. ..... .++    .++|.|.++.. +|+|.|+|.|.
T Consensus       118 ~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~  196 (210)
T 1lk3_L          118 PPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADY-ESHNLYTCEVV  196 (210)
T ss_dssp             CCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEE
T ss_pred             CCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHh-ccCCcEEEEEE
Confidence            223334579999999999984 554 89999999988654 11 11111 112    23799999998 99999999999


Q ss_pred             cCCcceE
Q psy2775         636 NELGSAT  642 (785)
Q Consensus       636 n~~g~~~  642 (785)
                      |......
T Consensus       197 n~~~~~~  203 (210)
T 1lk3_L          197 HKTSSSP  203 (210)
T ss_dssp             CTTCSSC
T ss_pred             ecCCCCe
Confidence            9877543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=6.7e-19  Score=171.52  Aligned_cols=166  Identities=13%  Similarity=0.117  Sum_probs=120.4

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-C
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-G  493 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g  493 (785)
                      +|.+...+.. .+.+|++++|.|.+.++.+.+.|+|++..+...... .........|.|.+++.+|+|.|+|.+.|. +
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   84 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   84 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCCCCcEEEEEECCCcccccccc-ccCCcceeEEEecCCCcccCeEEEEEEecCCc
Confidence            4555555555 788999999999998777789999999876421000 001123467999999999999999999885 3


Q ss_pred             --cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeee
Q psy2775         494 --DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK  571 (785)
Q Consensus       494 --~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  571 (785)
                        ..+....|.|.+...                                                 +|.+...+ ...+.
T Consensus        85 ~s~~S~~~~L~V~~~~~-------------------------------------------------~P~i~~~p-~~~v~  114 (242)
T 1p6f_A           85 WSEPSNLLDLVVTEMYD-------------------------------------------------TPTLSVHP-GPEVI  114 (242)
T ss_dssp             ECCCCCCEEEEEECCSC-------------------------------------------------CCEEEEES-CSEEE
T ss_pred             cccCCcceEEEeecccC-------------------------------------------------CCceEccC-CCccC
Confidence              234457777765310                                                 13333322 34688


Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      +|+.++|.|.+.+. .+.+.|+|+|..+..    ..........|.|.+++. +|+|.|+|.|.|..
T Consensus       115 ~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~-~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          115 SGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNN  175 (242)
T ss_dssp             TTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEECSSEEEEEEEECCG-GGCEEEEEEEEEET
T ss_pred             CCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCCCceEEEEeCCCcc-ccCEEEEEEEECCC
Confidence            99999999999865 469999999976643    122345677899999999 99999999999874

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.80  E-value=8.2e-19  Score=168.68  Aligned_cols=175  Identities=19%  Similarity=0.184  Sum_probs=127.1

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE---E--c---------cCCCCEEEeecCCccceEEEEEEc
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE---P--L---------QETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~---~--~---------~~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .|.|...|..+.+.+|++++|.|.+.+.|.+.+.|++++.   .  +         ....++.+....    ...+|+|.
T Consensus         1 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~   76 (213)
T 3r06_A            1 DIQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSG----RDSSFTIS   76 (213)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEES
T ss_pred             CCeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccC----CEEEEEEC
Confidence            3678888999999999999999999998889999998421   0  0         112344443211    23569999


Q ss_pred             ccCCCCCeEEEEEEEcCCee-EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCC--CeEEEeECCEEc
Q psy2775          78 SIKKREEGVYTVVAKNREGE-AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS--PKVEWYKDGKLI  154 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~~-~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~--~~v~W~~~g~~~  154 (785)
                      +++.+|+|.|+|.|.+..+. ......|.|. ....+|.+...+.......|+.+.|.|.+.|.++  +.++|++||..+
T Consensus        77 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~-~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l  155 (213)
T 3r06_A           77 SLESEDIGSYYCQQYYNYPWTFGPGTKLEIK-RADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEK  155 (213)
T ss_dssp             SCCGGGCSEEEEEECSSSSCEECCCEEEEEC-CCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CCCcccCEEEEEecccCCceEEcCCceEEEe-ccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCccc
Confidence            99999999999999987542 2333456663 2346777776555556667889999999987654  389999999998


Q ss_pred             ccce-E----EE-eCC----EEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         155 KDRQ-I----TS-EKN----THTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       155 ~~~~-~----~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      .... .    .. ..+    ...|.|.....+|+|.|+|.|.|....
T Consensus       156 ~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          156 RDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             CCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            7542 1    01 111    246888888889999999999998643

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.80  E-value=5.9e-19  Score=174.89  Aligned_cols=184  Identities=15%  Similarity=0.196  Sum_probs=126.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---cc-------------CCCCEEEeecCCccceEEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---LQ-------------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~~-------------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ..|..+.+.+|++|+|.|.+.|.|  .+.|.|++++  ..   +.             ...++.+..+..  ....+|+|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I   82 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS--KNQVFLKM   82 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETT--TTEEEEEE
T ss_pred             ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECC--CCEEEEEE
Confidence            345567899999999999999875  6899999862  11   10             123444433211  12356999


Q ss_pred             cccCCCCCeEEEEEEEcCCe-------eEE--EEeeEEEeCCCC-----------CCCceecCCCceEeccCCcEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAKNREG-------EAK--MDIPVKVNTGKP-----------EKPSILEPLHDVSITEGESAVLSVQ  136 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~-------~~~--~~~~v~v~~~~~-----------~~p~i~~~~~~~~~~~G~~v~l~C~  136 (785)
                      .+++.+|+|.|+|.|.|..|       ...  ....|.|.....           .++.+...+..+.+.+|+.++|.|.
T Consensus        83 ~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  162 (257)
T 1f3r_B           83 NSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCK  162 (257)
T ss_dssp             ESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEE
T ss_pred             CCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEE
Confidence            99999999999999999853       211  234666654210           1233445556777899999999999


Q ss_pred             EeccCCCeEEEeE--CCEEcc-------------cc--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775         137 VGGEPSPKVEWYK--DGKLIK-------------DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  199 (785)
Q Consensus       137 ~~g~p~~~v~W~~--~g~~~~-------------~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  199 (785)
                      +.+.|.+.+.|+|  +|..+.             ..  .........+|+|.+++.+|+|.|.|.|.|........+.|.
T Consensus       163 ~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~  242 (257)
T 1f3r_B          163 GSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLE  242 (257)
T ss_dssp             CSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEEC
T ss_pred             ECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEE
Confidence            9988888999999  665431             01  112234567899999999999999999999752222335666


Q ss_pred             eec
Q psy2775         200 VDP  202 (785)
Q Consensus       200 V~~  202 (785)
                      |..
T Consensus       243 V~~  245 (257)
T 1f3r_B          243 LKA  245 (257)
T ss_dssp             CSS
T ss_pred             EeC
Confidence            653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.80  E-value=1.7e-18  Score=163.05  Aligned_cols=163  Identities=13%  Similarity=0.171  Sum_probs=116.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEcc---CC---------------CCEEEeecCCccceEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQ---ET---------------DEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~~L~   75 (785)
                      |+..|..+.+.+|++|+|.|.+.+ .+.+.|.|++++..+.   ..               .|..+.  .     ..+|+
T Consensus         1 ~s~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~--~-----~~sL~   73 (193)
T 2if7_A            1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT--Q-----SYSLQ   73 (193)
T ss_dssp             --CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC--T-----TCCEE
T ss_pred             CCCCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC--C-----CeEEE
Confidence            345688899999999999999865 4457899999986542   11               122222  1     13499


Q ss_pred             EcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCC-cEEEEEEEecc-CCCeEEEeECCEE
Q psy2775          76 IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE-SAVLSVQVGGE-PSPKVEWYKDGKL  153 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~-~v~l~C~~~g~-p~~~v~W~~~g~~  153 (785)
                      |.+++.+|+|.|+|.|.+..+.....+.|.|.. .+..|.+....  .....|. .+.|.|.+.|. |.+.|+|+++|..
T Consensus        74 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~-~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~  150 (193)
T 2if7_A           74 LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR-QLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNT  150 (193)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-CCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred             ECCCCcccCceEEEEEEecCCCeEEEEEEEEEc-cCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEE
Confidence            999999999999999999988766777888864 22234444433  1233465 89999999984 5789999999987


Q ss_pred             cccceEEEeCCEEEEEEcccCCC-CcEEEEEEEEcCCeeEEEE
Q psy2775         154 IKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESA  195 (785)
Q Consensus       154 ~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~  195 (785)
                      +...        ..|.|.....+ |+|.|+|.|.|..|..+..
T Consensus       151 l~~~--------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          151 LSSQ--------PNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             EESS--------SEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             cCCC--------CeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            6321        24666544454 8999999999999987543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=6.4e-19  Score=172.93  Aligned_cols=217  Identities=12%  Similarity=0.099  Sum_probs=126.5

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEE----EeCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT----SEKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                      .+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+......    .......|.|.+++.+|+|.|+|.+.+
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            5677776654 67889999999999964 56799999998765422111    122456899999999999999999986


Q ss_pred             CCe-----eEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccC
Q psy2775         188 KEG-----TVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE  262 (785)
Q Consensus       188 ~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~  262 (785)
                      ..+     ..+..+.|.|....                             .+|.+...+. ..+.+|++++|.|.+.+.
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~-----------------------------~~P~l~~~p~-~~V~~G~~vtL~C~~~~~  133 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLY-----------------------------EKPSLSAQPG-PTVLAGESVTLSCSSRSS  133 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSS-----------------------------CCCEEECSSC-TTCBTTCEEEEEEECSSC
T ss_pred             cCCCccccccCCCEEEecccCC-----------------------------CCcceEccCC-CccCCCCEEEEEEeCCCC
Confidence            532     23445677776432                             3455655443 467899999999999775


Q ss_pred             CCCeEEEEECCEEcccce--EEE--eCCEEEEEEccCCCCCCeEEEEEEEeCCC-----ceEEEEEEEEeccccceeeec
Q psy2775         263 PSPKVEWYKDGKLIKDRQ--ITS--EKNTHTLTLIQCSTKDKGRYSVKVTNKEG-----TVESAANLNVDQGKAEFIKKL  333 (785)
Q Consensus       263 p~~~v~W~~~~~~l~~~~--~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g-----~~~~~~~l~v~~~~~~~~~~~  333 (785)
                       ++.+.|+|+|..+....  ...  ......|.|.+++  |+|.|+|.+.+...     ..+..+.|.|...|......+
T Consensus       134 -~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~  210 (257)
T 1b6u_A          134 -YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSP  210 (257)
T ss_dssp             -CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------
T ss_pred             -CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCC
Confidence             46999999997664211  111  1236789999998  99999999997532     122336777776433221112


Q ss_pred             cceeEeeCccEEEEEEEcCCCCeEEEEECC
Q psy2775         334 DDLEVKERENAVLEVEVTSDKADVKWFKDG  363 (785)
Q Consensus       334 ~~~~~~~g~~~~l~C~~~~~~~~v~W~~~~  363 (785)
                      .......|..+.|.|.+..+.+.+.|..-+
T Consensus       211 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~  240 (257)
T 1b6u_A          211 TEPSSETGNPRHLHAAAEQKLISEEDLNLD  240 (257)
T ss_dssp             ------------------------------
T ss_pred             cccCccCCCeEEEEEEEcchHHHHHHhhhh
Confidence            223456788999999888788899997543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.80  E-value=5.6e-19  Score=170.61  Aligned_cols=179  Identities=12%  Similarity=0.183  Sum_probs=122.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEcc-----------------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPLQ-----------------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|++++  ..+.                 ...++.+..+..  ....+|+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~   82 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETS--ATTAYLQ   82 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGG--GTEEEEE
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecC--CCEEEEE
Confidence            456778999999999999998875  6889999973  2211                 123444433211  1235799


Q ss_pred             EcccCCCCCeEEEEEEEcCCe----eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEEEeE
Q psy2775          76 IKSIKKREEGVYTVVAKNREG----EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYK  149 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~----~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W~~  149 (785)
                      |.+++.+|+|.|+|.|.+..+    .......|.|....+.+|.+........+.+|+.+.|.|.+.| .|.+ .|+|++
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  162 (219)
T 1c1e_H           83 INNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (219)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEe
Confidence            999999999999999998763    1223456777653445566654443445678999999999988 8888 999999


Q ss_pred             CCEEcccc---eEEEeC---CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEE
Q psy2775         150 DGKLIKDR---QITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL  198 (785)
Q Consensus       150 ~g~~~~~~---~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  198 (785)
                      +|..+...   .....+   ....|.|..... |.|.|+|.|.|..+.......+
T Consensus       163 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             GTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred             CCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence            99865321   111111   124688854444 5699999999998765544433

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.80  E-value=2.4e-18  Score=170.55  Aligned_cols=179  Identities=15%  Similarity=0.236  Sum_probs=127.6

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECC--EEc-----------------cCCCCEEEeecCCcc
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG--EPL-----------------QETDEVVFSDQSDMH   68 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~~~-----------------~~~~~~~~~~~~~~~   68 (785)
                      ..+|.|...+..+.+.+|++|+|.|.+.+.  +.+.+.|++..  ..+                 ....++.+..+....
T Consensus         4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            467888999999999999999999999873  66789999843  110                 012344444322221


Q ss_pred             ceEEEEEEcccCCCCCeEEEEEEEcC------------CeeEEEEeeEEEeCCCC-----------CCCceecCCCceEe
Q psy2775          69 SYVSIVTIKSIKKREEGVYTVVAKNR------------EGEAKMDIPVKVNTGKP-----------EKPSILEPLHDVSI  125 (785)
Q Consensus        69 ~~~~~L~i~~~~~~D~G~Y~C~a~~~------------~~~~~~~~~v~v~~~~~-----------~~p~i~~~~~~~~~  125 (785)
                        ..+|+|.+++.+|+|.|.|.+.+.            .........|.|.....           .+|.+...+....+
T Consensus        84 --~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  161 (256)
T 3juy_B           84 --TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSL  161 (256)
T ss_dssp             --EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEE
T ss_pred             --EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEE
Confidence              256999999999999999999986            33333445677764221           14567777788899


Q ss_pred             ccCCcEEEEEEEeccCC-CeEEEeEC--CEEcc-------------cc--eEEEeCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         126 TEGESAVLSVQVGGEPS-PKVEWYKD--GKLIK-------------DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       126 ~~G~~v~l~C~~~g~p~-~~v~W~~~--g~~~~-------------~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                      .+|++++|.|.+.+.+. +.+.|+|.  +..+.             ..  .........+|.|.+++.+|+|.|.|.|.|
T Consensus       162 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  241 (256)
T 3juy_B          162 SPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYG  241 (256)
T ss_dssp             CTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECC
T ss_pred             eCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEee
Confidence            99999999999988776 89999982  22211             01  122344567899999999999999999988


Q ss_pred             CCe
Q psy2775         188 KEG  190 (785)
Q Consensus       188 ~~g  190 (785)
                      ...
T Consensus       242 ~~~  244 (256)
T 3juy_B          242 ASS  244 (256)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.79  E-value=9.2e-19  Score=171.50  Aligned_cols=176  Identities=16%  Similarity=0.187  Sum_probs=127.8

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--E------------ccCCCCEEEeecCCccceEEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--P------------LQETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ..+.+...|..+.+.+|++++|.|.+.+.+.+.+.|++++.  .            .....++......    ...+|+|
T Consensus        23 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I   98 (237)
T 3sob_L           23 ADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG----TDFTLTI   98 (237)
T ss_dssp             -CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEE
T ss_pred             ccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCC----CEEEEEE
Confidence            34677788999999999999999999888889999998431  0            0112344443221    2356999


Q ss_pred             cccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cC-CCeEEEeECCEE
Q psy2775          77 KSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EP-SPKVEWYKDGKL  153 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p-~~~v~W~~~g~~  153 (785)
                      .+++.+|+|.|+|.+.+..+.. .....+.|.. ...+|.+...........|+.+.|.|.+.+ .| .+.|+|++||..
T Consensus        99 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~  177 (237)
T 3sob_L           99 SSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKR-TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL  177 (237)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC-CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCChhhCeEEEEeeccCCceEEcCcEEEEEec-CCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCC
Confidence            9999999999999998876532 2334566644 446677765555555567899999999987 44 579999999999


Q ss_pred             cccceE-----EE-eCC----EEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         154 IKDRQI-----TS-EKN----THTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       154 ~~~~~~-----~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      +.....     .. .++    ..+|.|.....+|+|.|+|.|.|....
T Consensus       178 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          178 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            875320     00 111    356889999999999999999998754

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.79  E-value=1.9e-19  Score=175.70  Aligned_cols=164  Identities=20%  Similarity=0.275  Sum_probs=118.8

Q ss_pred             cCCCeEEecCCcEEEEEEEeCCC--ceEEEEECCEEcc---------c----CCCEE----------EEEeCcEEEEEEc
Q psy2775         421 PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIA---------F----SENVT----------LSIDGKKQKLIIF  475 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~~~--~~i~W~~~~~~~~---------~----~~~~~----------~~~~~~~~~L~i~  475 (785)
                      .+....+.+|+.+.|.|.+.+.+  +.+.|++++....         .    ..++.          +..++   .|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~L~i~   82 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG---RLVLA   82 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC---CEEES
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc---eEEEc
Confidence            45677889999999999999843  6899998654311         0    11111          22122   39999


Q ss_pred             cCCCCCcEEEEEEEeec--CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         476 SAGLEDAGEYSCRVGDT--GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~--g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      +++.+|+|.|+|.|.|.  +.....+.|.|..++..                                            
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~--------------------------------------------  118 (231)
T 2pet_A           83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEA--------------------------------------------  118 (231)
T ss_dssp             SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCC--------------------------------------------
T ss_pred             ccCcccCceEEEEEEecCCCceEEEEEEEEEecCCC--------------------------------------------
Confidence            99999999999999985  56667788888876421                                            


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeE-EEEEEE-ecCCCCceEEEeCCEEecCCC----CeeEEee----C-C----eEEEEE
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTI-RLMAKV-KASPAPSIVWFRNNKPLLSSP----KKREIFD----G-E----NIILEL  618 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v-~l~C~~-~g~P~p~v~W~~~~~~i~~~~----~~~~~~~----~-~----~~~L~i  618 (785)
                           |.+........+.+|+.+ +|.|.+ .|.|.|.|.|+|+|..+....    +..+...    . +    .++|.|
T Consensus       119 -----~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i  193 (231)
T 2pet_A          119 -----TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL  193 (231)
T ss_dssp             -----CEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             -----cEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEE
Confidence                 344444445667789988 999999 899999999999999987665    3333221    1 1    256888


Q ss_pred             ccCCCCCCceeEEEEEEcC
Q psy2775         619 KEADSETDAGDYKVVATNE  637 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ..... +|+|.|+|.|.|.
T Consensus       194 ~~~~~-dd~g~Y~C~a~n~  211 (231)
T 2pet_A          194 RLRKD-DRDASFHCAAHYS  211 (231)
T ss_dssp             ECCGG-GGGCEEEEEEEEE
T ss_pred             ecchh-hCCceEEEEEEcC
Confidence            75554 6799999999994

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=4.6e-19  Score=147.62  Aligned_cols=96  Identities=31%  Similarity=0.342  Sum_probs=89.3

Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      +.+.||.|+..++++.+.+|++++|.|.+.|+|.|.|+|+|||..|..+.++.+..++..++|.|.++.. +|+|.|+|.
T Consensus         9 ~~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~   87 (107)
T 3knb_B            9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALP-TDAGVYVCR   87 (107)
T ss_dssp             -CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCG-GGCEEEEEE
T ss_pred             CCCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCCh-hhCEEEEEE
Confidence            3456799999999999999999999999999999999999999999988888888888889999999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTVD  650 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~  650 (785)
                      |.|..|....++.|.|.
T Consensus        88 a~N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           88 ARNAAGEAYAAAAVTVL  104 (107)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999999999988887

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.79  E-value=4.5e-18  Score=167.63  Aligned_cols=190  Identities=14%  Similarity=0.159  Sum_probs=129.0

Q ss_pred             CCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EEc-----------------ccCCCEEEEEe--CcEEEEEEccCC
Q psy2775         423 QDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KEI-----------------AFSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      ....+.+|++++|.|.+.+ +  .+.+.|+|++  ..+                 ....++.+..+  +...+|+|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            4577889999999999998 3  4679999842  111                 12346666654  346789999999


Q ss_pred             CCCcEEEEEEEeec-Cc--ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         479 LEDAGEYSCRVGDT-GD--KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      .+|+|.|+|.|.|. +.  ....+.|.|..++..-    +...         +                        ...
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~----~~~~---------~------------------------~~~  132 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGS----GGGG---------S------------------------GGG  132 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------------------------------------------
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccc----cccc---------c------------------------CCC
Confidence            99999999999995 22  1234567776542100    0000         0                        000


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe--CCEEec------------CCCCeeEEeeCCeEEEEEccC
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL------------SSPKKREIFDGENIILELKEA  621 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~--~~~~i~------------~~~~~~~~~~~~~~~L~i~~~  621 (785)
                      ..+|.+...+....+.+|++++|.|.+.|.|.|.+.|+|  ++..+.            ...++.....+...+|+|.++
T Consensus       133 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  212 (247)
T 2ghw_B          133 GSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRL  212 (247)
T ss_dssp             -CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSC
T ss_pred             CcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcC
Confidence            012455555667789999999999999999999999999  554331            123444444556778999999


Q ss_pred             CCCCCceeEEEEEEcCCcceEE-EEEEEEE
Q psy2775         622 DSETDAGDYKVVATNELGSATH-GARVTVD  650 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~  650 (785)
                      .. +|+|.|+|.|.|..+.... ...|.|.
T Consensus       213 ~~-~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          213 EP-EDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             CG-GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CH-HHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            99 9999999999997544332 2455554

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.79  E-value=1.1e-18  Score=167.51  Aligned_cols=174  Identities=15%  Similarity=0.159  Sum_probs=121.6

Q ss_pred             CCCeEEecCCcEEEEEEEeC-C---CceEEEEECC--EEc------------ccCCCEEEEEeCcEEEEEEccCCCCCcE
Q psy2775         422 LQDVKVSRDEKASFEIELTK-G---DALVKWYKDG--KEI------------AFSENVTLSIDGKKQKLIIFSAGLEDAG  483 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~---~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G  483 (785)
                      +....+.+|++++|.|.+.+ +   .+.+.|++++  ..+            ....++.+...+....|+|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            56677899999999999987 4   3689999852  222            1235666666667789999999999999


Q ss_pred             EEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeE
Q psy2775         484 EYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF  561 (785)
Q Consensus       484 ~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~  561 (785)
                      .|+|.|.|. +. ......|.|...+.                                                .+|.+
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------------~~P~v  118 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPK------------------------------------------------SSPTV  118 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCC------------------------------------------------BCCEE
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCC------------------------------------------------CCCee
Confidence            999999996 32 12345566643210                                                01444


Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCC-CC-ceEEEeCCEEecCCCCee-EEee-CC----eEEEEEccCCCCCCceeEEEE
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASP-AP-SIVWFRNNKPLLSSPKKR-EIFD-GE----NIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P-~p-~v~W~~~~~~i~~~~~~~-~~~~-~~----~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      ........+..|+.++|.|.+.|.| +| .|.|+|+|..+..+.... .... ++    .+.|.|..+.. +|+|.|+|.
T Consensus       119 ~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~  197 (212)
T 1q0x_L          119 TLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW-ERHSSYSCQ  197 (212)
T ss_dssp             EEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHH-TTCCEEEEE
T ss_pred             EEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHc-cCCCcEEEE
Confidence            4333333445799999999999864 44 899999999986542211 1111 11    24689999888 899999999


Q ss_pred             EEcCCcceEEE
Q psy2775         634 ATNELGSATHG  644 (785)
Q Consensus       634 a~n~~g~~~~~  644 (785)
                      |.|..+....+
T Consensus       198 a~n~~~~~~~~  208 (212)
T 1q0x_L          198 VTHEGHSSNKT  208 (212)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEeCCcceeee
Confidence            99987765443

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.79  E-value=6.3e-19  Score=174.48  Aligned_cols=241  Identities=12%  Similarity=0.087  Sum_probs=109.6

Q ss_pred             CCceEeccCCcEEEEEEEeccCCC-eEEEeE--CCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE
Q psy2775         120 LHDVSITEGESAVLSVQVGGEPSP-KVEWYK--DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  196 (785)
Q Consensus       120 ~~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~--~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  196 (785)
                      +....+.+|+.+.|+|.+.. +.+ .+.|.-  ++..+.    ........|.|.++..+  |.|+|++.......+..+
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~----~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v   78 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELL----LPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKT   78 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCC----CSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEEC
T ss_pred             CCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccc----cCCCceEEEEEEecccC--CeEEEEEEcCCccEEEEE
Confidence            35678899999999999964 444 488853  111110    11223346788887754  469999986655566667


Q ss_pred             EEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccC-CCC--eEEEEECC
Q psy2775         197 NLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP--KVEWYKDG  273 (785)
Q Consensus       197 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~~--~v~W~~~~  273 (785)
                      .|.|...|                             ..|.+...  ...+.+|+.++|.|.+.+. |..  .|+|+|++
T Consensus        79 ~l~V~~~P-----------------------------~~v~I~~~--~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~  127 (291)
T 1mq8_A           79 FLTVYWTP-----------------------------ERVELAPL--PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (291)
T ss_dssp             EEEECBCC-----------------------------SCCCBCCC--CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred             EEEEecCC-----------------------------CCCEEecC--CccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence            78887543                             22233322  2347889999999999764 444  58999999


Q ss_pred             EEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCc--------eEEEEEEEEeccccceeeeccceeEeeCccEE
Q psy2775         274 KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT--------VESAANLNVDQGKAEFIKKLDDLEVKERENAV  345 (785)
Q Consensus       274 ~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~--------~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~  345 (785)
                      +.+............+|.+.....+|++.|+|+|.|..+.        .+....|.|.+.|+.......+..+.+|+.++
T Consensus       128 ~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~  207 (291)
T 1mq8_A          128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGT  207 (291)
T ss_dssp             SEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------
T ss_pred             EEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEE
Confidence            8876333222233557888888888888999999987552        22336788887654422212233678999999


Q ss_pred             EEEEEcC-CCC---eEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCC---CC--CCceEEEEEEeccc
Q psy2775         346 LEVEVTS-DKA---DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI---SV--HDEGEYTCSLPDQE  404 (785)
Q Consensus       346 l~C~~~~-~~~---~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~---~~--~d~G~Y~C~a~n~~  404 (785)
                      |.|.+.+ +++   .+.|+++|+.+.....    .+|..  +.+...   ..  ++.+.|+|.|.+..
T Consensus       208 l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~~C~~~~~~  269 (291)
T 1mq8_A          208 VVCSLDGLFPVSEAQVHLALGDQRLNPTVT----YGNDS--FSAKASVSVTAEDEGTQRLTCAVILGN  269 (291)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             EEEEcCCCCCCcccEEEEEECCEecCceee----ecCCe--EEEEEecceeEcCCCCEEEEEEEEeCC
Confidence            9999997 343   6999999998875321    11221  223222   23  34678889998644

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.79  E-value=6.5e-18  Score=167.02  Aligned_cols=176  Identities=15%  Similarity=0.220  Sum_probs=126.3

Q ss_pred             CCCeEEecCCcEEEEEEEeCC---CceEEEEEC--CEEc-----------------ccCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTKG---DALVKWYKD--GKEI-----------------AFSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +....+.+|++++|.|.+.+.   .+.+.|+|+  +..+                 ....++.+..+  +....|+|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            456788999999999999873   568999994  2221                 01356666654  45678999999


Q ss_pred             CCCCcEEEEEEEeec-Cc-----ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccC
Q psy2775         478 GLEDAGEYSCRVGDT-GD-----KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCP  551 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~-----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  551 (785)
                      +.+|+|.|+|.|.|. |.     ......|.|..+                                             
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~---------------------------------------------  121 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD---------------------------------------------  121 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCC---------------------------------------------
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeeccc---------------------------------------------
Confidence            999999999999996 42     112355666533                                             


Q ss_pred             CCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC-----ceEEEe--CCEEec------------CCCCeeEEeeCC
Q psy2775         552 LGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-----SIVWFR--NNKPLL------------SSPKKREIFDGE  612 (785)
Q Consensus       552 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-----~v~W~~--~~~~i~------------~~~~~~~~~~~~  612 (785)
                             |.+...+....+.+|++++|.|.+.|.|.+     .|.|+|  +|..+.            ...++.......
T Consensus       122 -------~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (256)
T 1nqb_A          122 -------IELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGT  194 (256)
T ss_dssp             -------CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT
T ss_pred             -------ccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCC
Confidence                   333344456678999999999999999875     999999  555431            123444444566


Q ss_pred             eEEEEEccCCCCCCceeEEEEEEcCCcceEE-EEEEEEE
Q psy2775         613 NIILELKEADSETDAGDYKVVATNELGSATH-GARVTVD  650 (785)
Q Consensus       613 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~  650 (785)
                      .++|+|.+++. +|+|.|+|.|.|..+.... ...|.|.
T Consensus       195 ~~~L~I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          195 DFTLKISRVEA-EDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             EEEEEESSCCG-GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEECCCCh-HHCEEEEEEEccCCceEECCCEEEEEE
Confidence            78899999999 9999999999986543322 2455554

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.79  E-value=2.7e-18  Score=169.97  Aligned_cols=188  Identities=15%  Similarity=0.227  Sum_probs=129.3

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c----------cCCCCEEEeecCCccceEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L----------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~----------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +..+...|..+.+.+|++|+|.|.+.+.|.+.+.|++..  ..   +          ....++.+.....  ....+|+|
T Consensus         3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL~I   80 (256)
T 3tf7_C            3 AQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS--DSSFHLRK   80 (256)
T ss_dssp             -CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETT--TTEEEEEE
T ss_pred             ccEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCC--CCEEEEEE
Confidence            456788889999999999999999999899999999842  11   0          0122333321111  12356999


Q ss_pred             cccCCCCCeEEEEEEEcCCe----eEEEEeeEEEeCC----------------CCCCCceecCCCceEeccCCcEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAKNREG----EAKMDIPVKVNTG----------------KPEKPSILEPLHDVSITEGESAVLSVQ  136 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~----~~~~~~~v~v~~~----------------~~~~p~i~~~~~~~~~~~G~~v~l~C~  136 (785)
                      .+++.+|+|.|.|.+.+..+    .......|.|...                ...+|.+...+....+.+|+.++|.|.
T Consensus        81 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~  160 (256)
T 3tf7_C           81 ASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCR  160 (256)
T ss_dssp             SSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEE
T ss_pred             CCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEE
Confidence            99999999999999998754    1222345666531                234677888888888899999999999


Q ss_pred             EeccCCCeEEEeECC--EEccc----------------ceEE---EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE-
Q psy2775         137 VGGEPSPKVEWYKDG--KLIKD----------------RQIT---SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-  194 (785)
Q Consensus       137 ~~g~p~~~v~W~~~g--~~~~~----------------~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-  194 (785)
                      +.+. .+.+.|+|..  ..+..                ..+.   ......+|+|.+++.+|+|.|+|.|.|..|.... 
T Consensus       161 ~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG  239 (256)
T 3tf7_C          161 QTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFG  239 (256)
T ss_dssp             ECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEEC
T ss_pred             cCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEEC
Confidence            9876 6799999832  11100                0000   1234558999999999999999999998765433 


Q ss_pred             -EEEEEeec
Q psy2775         195 -AANLNVDP  202 (785)
Q Consensus       195 -~~~l~V~~  202 (785)
                       ...|.|.+
T Consensus       240 ~gt~l~v~~  248 (256)
T 3tf7_C          240 EGSKLTVLE  248 (256)
T ss_dssp             CCEEEEEEC
T ss_pred             CCeEEEEEc
Confidence             35666653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.79  E-value=1.8e-18  Score=171.03  Aligned_cols=188  Identities=12%  Similarity=0.193  Sum_probs=131.0

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecC--CCeeEEEEC--CEE---c--------------cCCCCEEEeecCCccceEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYN--GEP---L--------------QETDEVVFSDQSDMHSYVS   72 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~--~~~---~--------------~~~~~~~~~~~~~~~~~~~   72 (785)
                      .++..|..+.+.+|++|+|.|.+.+.+  .+.+.|++.  +..   +              ....++.+..+....  ..
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~   80 (253)
T 3uzq_A            3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSN--TA   80 (253)
T ss_dssp             CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTT--EE
T ss_pred             eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCC--eE
Confidence            356778899999999999999998754  678999983  111   1              112344444333222  25


Q ss_pred             EEEEcccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCC-----------CCCCCceecCCCceEeccCCcEEEEEEEecc
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTG-----------KPEKPSILEPLHDVSITEGESAVLSVQVGGE  140 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~-----------~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~  140 (785)
                      +|+|.+++.+|+|.|.|.|.+..+.. .....|.|...           ...+|.+...+....+.+|++++|.|.+.+.
T Consensus        81 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  160 (253)
T 3uzq_A           81 YLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASEN  160 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred             EEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCc
Confidence            69999999999999999999865543 23455666531           1235677777778899999999999999887


Q ss_pred             CCC----eEEEeEC--CEEcc---------------cceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE-EEEEE
Q psy2775         141 PSP----KVEWYKD--GKLIK---------------DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANL  198 (785)
Q Consensus       141 p~~----~v~W~~~--g~~~~---------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l  198 (785)
                      +.+    .+.|+|+  +..+.               ...........+|+|.+++.+|+|.|.|.|.|..+... ..+.|
T Consensus       161 ~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l  240 (253)
T 3uzq_A          161 VDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKL  240 (253)
T ss_dssp             CEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEE
T ss_pred             cccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEE
Confidence            776    8999984  22211               01122344567899999999999999999998654322 23667


Q ss_pred             EeecC
Q psy2775         199 NVDPY  203 (785)
Q Consensus       199 ~V~~~  203 (785)
                      .|...
T Consensus       241 ~v~~~  245 (253)
T 3uzq_A          241 EIKRP  245 (253)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            77643

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.79  E-value=1.5e-18  Score=167.07  Aligned_cols=175  Identities=15%  Similarity=0.223  Sum_probs=120.2

Q ss_pred             eecCCceEecCCCeEEEEEEEEec-------CCCeeEEEECCEEc-----------------cCCCCEEEeecCCccceE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAV-------PEPDLLWYYNGEPL-----------------QETDEVVFSDQSDMHSYV   71 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~-------p~~~i~W~~~~~~~-----------------~~~~~~~~~~~~~~~~~~   71 (785)
                      ...|..+.+.+|++++|.|.+.+.       +.+.+.|++++...                 ....++.+..+.  ....
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~   81 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDV--QKKN   81 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCG--GGTB
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccC--CCCe
Confidence            456888999999999999999754       46789999987521                 011344433221  1112


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCeeEE----EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc----CCC
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKNREGEAK----MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE----PSP  143 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~~~~~~~----~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~----p~~  143 (785)
                      .+|+|.+++.+|+|.|.|.+.+..+...    ..+.|.|.. .+.+|.+..+.   .+.+|+.+.|.|.+.+.    |.+
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~-~~~~p~i~~~~---~~~~G~~v~L~C~~~~~~~~~p~p  157 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTA-LIEKPDIHFLE---PLESGRPTRLSCSLPGSCEAGPPL  157 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEEC-CCCCCEEC--C---CCCTTCCEEEEEECTTCCSCSSCC
T ss_pred             EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEec-CCCCCceecCc---cccCCCeEEEEEEeccCCCCCCCc
Confidence            3599999999999999999998763322    346677763 23356665432   26789999999999764    788


Q ss_pred             eEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775         144 KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  199 (785)
Q Consensus       144 ~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  199 (785)
                      .++|++++..+....   ......|.|..+..+|+|.|+|.|.|..+....+..++
T Consensus       158 ~v~W~~~~~~~~~~~---~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          158 TFSWTGNALSPLDPE---TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             EEEEESSTTSSSCSS---CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             eEEEeCCCCccCCCC---ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            999999986543221   13345799999999999999999999765443333333

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.79  E-value=1.6e-18  Score=167.24  Aligned_cols=178  Identities=17%  Similarity=0.257  Sum_probs=121.7

Q ss_pred             ccccCCCeEEecCCcEEEEEEEeCC--CceEEEEECC---EE------------cc---cCCCEEEEEeCcEEEEEEccC
Q psy2775         418 ISVPLQDVKVSRDEKASFEIELTKG--DALVKWYKDG---KE------------IA---FSENVTLSIDGKKQKLIIFSA  477 (785)
Q Consensus       418 ~~~~~~~~~v~~g~~~~l~C~~~~~--~~~i~W~~~~---~~------------~~---~~~~~~~~~~~~~~~L~i~~~  477 (785)
                      +..++ ...+.+|++++|.|.+.+.  .+.+.|+|..   ..            ..   ...++.+...+....|.|.++
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNI   82 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccC
Confidence            44455 7788999999999999874  6789999831   10            00   113666666667788999999


Q ss_pred             CCCCcEEEEEEEeec-C-----cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccC
Q psy2775         478 GLEDAGEYSCRVGDT-G-----DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCP  551 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  551 (785)
                      +.+|+|.|+|.|.|. |     .....+.|.|...+.                                           
T Consensus        83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------  119 (218)
T 3s96_B           83 QPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK-------------------------------------------  119 (218)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC-------------------------------------------
T ss_pred             CcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC-------------------------------------------
Confidence            999999999999996 4     223456777775321                                           


Q ss_pred             CCCCCCCCeEeeeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCCCCee-EEeeCC----eEEEEEccCCCC
Q psy2775         552 LGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKR-EIFDGE----NIILELKEADSE  624 (785)
Q Consensus       552 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~~~~~-~~~~~~----~~~L~i~~~~~~  624 (785)
                           .+|.+........+..|+.++|.|.+.| .|.| .|.|+|+|..+..+.... ....++    ...|.|..... 
T Consensus       120 -----~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~-  193 (218)
T 3s96_B          120 -----STPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQW-  193 (218)
T ss_dssp             -----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHH-
T ss_pred             -----CCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHc-
Confidence                 1144443333445567899999999998 5777 899999999986532211 111122    23488888877 


Q ss_pred             CCceeEEEEEEcCCcceEEEE
Q psy2775         625 TDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      +|+|.|+|.|.|..|....++
T Consensus       194 ~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          194 RSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             HTCSCEEEEEEETTEEEEEEE
T ss_pred             cCCCeEEEEEEeCCCcccccc
Confidence            889999999999988666543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.78  E-value=9.7e-19  Score=169.28  Aligned_cols=178  Identities=11%  Similarity=0.165  Sum_probs=124.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---cc----------------CCCCEEEeecCCccceEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---LQ----------------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~~~   73 (785)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|++++  ..   +.                ...++.+..+..  ....+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~   82 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS--QSILY   82 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT--TTEEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECC--CCeEE
Confidence            346678999999999999998765  6789999853  11   10                023444443321  12356


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCe-----eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEE
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREG-----EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVE  146 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~-----~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~  146 (785)
                      |+|.+++.+|+|.|.|.+.+..+     .......|.|....+.+|.+........+..|+.+.|.|.+.|. |.+ .|.
T Consensus        83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  162 (222)
T 1q9r_B           83 LQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  162 (222)
T ss_dssp             EEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEE
Confidence            99999999999999999998653     11223466776544456766544333346689999999999885 877 999


Q ss_pred             EeECCEEcccceE--EEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEE
Q psy2775         147 WYKDGKLIKDRQI--TSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN  197 (785)
Q Consensus       147 W~~~g~~~~~~~~--~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  197 (785)
                      |+++|..+.....  ....+    .+.|.|.++..+| |.|+|.|.|..|.......
T Consensus       163 W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~  218 (222)
T 1q9r_B          163 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  218 (222)
T ss_dssp             EGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEe
Confidence            9999987643211  11122    3468999998889 9999999999886554443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.78  E-value=2.8e-18  Score=168.10  Aligned_cols=172  Identities=15%  Similarity=0.218  Sum_probs=119.0

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EEc---------------cCCCCEEEeecCCccceEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPL---------------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .|...|..+.+.+|++++|.|. .+.|.+.|.|++++  ..+               ....++.+.....   ...+|+|
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I   77 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQ---ENFSLIL   77 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSS---SBCEEEE
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCC---ceEEEEE
Confidence            4667789999999999999999 77888999999952  110               0123444332111   1245999


Q ss_pred             cccCCCCCeEEEEEEEcCCeeE-----EEEeeEEEeCCCCC--------CCceecCCCceEeccCCcEEEEEEEeccCCC
Q psy2775          77 KSIKKREEGVYTVVAKNREGEA-----KMDIPVKVNTGKPE--------KPSILEPLHDVSITEGESAVLSVQVGGEPSP  143 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~~~-----~~~~~v~v~~~~~~--------~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~  143 (785)
                      .+++.+|+|.|+|.|.|..+..     .....|.|....+.        .+.+...+....+.+|+.+.|.|.+.+.|.+
T Consensus        78 ~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~  157 (238)
T 2p1y_A           78 ELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD  157 (238)
T ss_dssp             SSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC
T ss_pred             ecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC
Confidence            9999999999999999875421     12345666531110        0155556677889999999999999998889


Q ss_pred             eEEEeECC--EE---cc----------cceEE----EeCCEEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         144 KVEWYKDG--KL---IK----------DRQIT----SEKNTHTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       144 ~v~W~~~g--~~---~~----------~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      .+.|+|++  ..   +.          ...+.    ......+|.|.+++.+|+|.|+|.|.|..
T Consensus       158 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          158 YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99999963  11   10          11111    12345789999999999999999999873

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.78  E-value=1.5e-18  Score=171.90  Aligned_cols=178  Identities=15%  Similarity=0.133  Sum_probs=123.0

Q ss_pred             CCeEEecCCcEEEEEEEeCC---CceEEEEEC--CEEcc----------------cCCCEEEEEe--CcEEEEEEccCCC
Q psy2775         423 QDVKVSRDEKASFEIELTKG---DALVKWYKD--GKEIA----------------FSENVTLSID--GKKQKLIIFSAGL  479 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~--~~~~~----------------~~~~~~~~~~--~~~~~L~i~~~~~  479 (785)
                      ....+.+|++++|.|.+.+.   .+.+.|+|+  +..+.                ...++.+..+  +....|+|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            34578899999999999873   578999985  22110                1346666654  4567899999999


Q ss_pred             CCcEEEEEEEeec-C------cc---eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccc
Q psy2775         480 EDAGEYSCRVGDT-G------DK---ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT  549 (785)
Q Consensus       480 ~d~G~Y~C~a~n~-g------~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  549 (785)
                      +|+|.|+|.|.|. |      ..   ...+.|.|..++...  ......                               
T Consensus        88 ~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~--~~~~~~-------------------------------  134 (257)
T 1f3r_B           88 DDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGS--GGGGSG-------------------------------  134 (257)
T ss_dssp             TCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSS--CCSSSC-------------------------------
T ss_pred             ccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccc--cccccC-------------------------------
Confidence            9999999999996 3      11   134567776543100  000000                               


Q ss_pred             cCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe--CCEEec------------CCCCeeEEeeCCeEE
Q psy2775         550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL------------SSPKKREIFDGENII  615 (785)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~--~~~~i~------------~~~~~~~~~~~~~~~  615 (785)
                          ....++.+...+....+.+|++++|.|.+.|.|.|.+.|+|  +|..+.            ...++.....+..++
T Consensus       135 ----~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  210 (257)
T 1f3r_B          135 ----GGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYT  210 (257)
T ss_dssp             ----CCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEE
T ss_pred             ----CCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEE
Confidence                00001333444456778999999999999999999999999  554331            123444444566778


Q ss_pred             EEEccCCCCCCceeEEEEEEcCC
Q psy2775         616 LELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       616 L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |+|.++.. +|+|.|+|.|.|..
T Consensus       211 L~I~~v~~-~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          211 LTISSLQP-EDVATYFCYQYNNG  232 (257)
T ss_dssp             EEECSCCG-GGCSEEEEEEESSS
T ss_pred             EEECCCCh-hhCEEEEEEEeCCC
Confidence            99999999 99999999999975

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.78  E-value=2e-18  Score=162.45  Aligned_cols=159  Identities=16%  Similarity=0.216  Sum_probs=111.3

Q ss_pred             cCCCeEEecCCcEEEEEEEeC--CCceEEEEECCEEcc---cC---------------CCEEEEEeCcEEEEEEccCCCC
Q psy2775         421 PLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIA---FS---------------ENVTLSIDGKKQKLIIFSAGLE  480 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~--~~~~i~W~~~~~~~~---~~---------------~~~~~~~~~~~~~L~i~~~~~~  480 (785)
                      .+..+.+.+|++++|.|.+.+  +.+.|.|++++..+.   ..               ++..+.   ....|+|.+++.+
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~   80 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKME   80 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGG
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcc
Confidence            455677889999999999875  346899999986542   10               133332   1347999999999


Q ss_pred             CcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCC
Q psy2775         481 DAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP  559 (785)
Q Consensus       481 d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p  559 (785)
                      |+|.|+|.|.|. +.....+.|.|..++..                                                 |
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~-------------------------------------------------p  111 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRILRQLRN-------------------------------------------------I  111 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCEE-------------------------------------------------E
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEEccCCC-------------------------------------------------C
Confidence            999999999997 65566778888765310                                                 2


Q ss_pred             eEeeeeeeeeeeecC-eEEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         560 LFIERFEEKTVKEKG-TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~-~v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .+....  ..+..|. .++|.|.+.|. |.|.|+|+|+|..+..+         .  .|.|......+|+|.|+|.|.|.
T Consensus       112 ~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~---------~--~l~i~~~~~~~d~G~Y~C~a~N~  178 (193)
T 2if7_A          112 QVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ---------P--NLTVSWDPRISSEQDYTCIAENA  178 (193)
T ss_dssp             EEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS---------S--EEEEEECTTTCSCCEEEEEEEET
T ss_pred             eEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC---------C--eEEEEeccCcCCCCcEEEEEECC
Confidence            222111  1233465 89999999996 57899999999876432         1  36665444413899999999999


Q ss_pred             CcceEEE
Q psy2775         638 LGSATHG  644 (785)
Q Consensus       638 ~g~~~~~  644 (785)
                      .|..+..
T Consensus       179 ~g~~s~~  185 (193)
T 2if7_A          179 VSNLSFS  185 (193)
T ss_dssp             TEEEEEE
T ss_pred             CCccccc
Confidence            9987543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.78  E-value=1.5e-19  Score=171.54  Aligned_cols=174  Identities=20%  Similarity=0.230  Sum_probs=105.4

Q ss_pred             ecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcceeEEEEEEEcCc
Q psy2775         428 SRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPA  507 (785)
Q Consensus       428 ~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l~V~~~~  507 (785)
                      .+|++++|.|.+  +.+.|.|+|+|..+...       ......|.|.+++.+|+|.|+|.+.+..+.  ...|.|....
T Consensus        16 ~~G~~v~L~C~~--p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~--~~~v~v~~~~   84 (204)
T 1sy6_A           16 QEDGSVLLTCDA--EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSK--PLQVYYRMGS   84 (204)
T ss_dssp             CSSSEEEEEECS--CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCCC--CEEEEEEC--
T ss_pred             cCCCeEEEEEcC--CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCCe--eEEEEEEEec
Confidence            579999999998  78899999999987532       112347999999999999999998664322  2444444110


Q ss_pred             ccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeee-ecCeEEEEEEEecCC
Q psy2775         508 VEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK-EKGTIRLMAKVKASP  586 (785)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~-~g~~v~l~C~~~g~P  586 (785)
                      .....  ......   ...      ..+...    ..+.      .....++.+...  ...+. +|++++|.|.  |.|
T Consensus        85 ~~~~~--~~~~~~---~~~------~~~~~~----~~~~------~~~~~~~~~~~~--p~~v~~~G~~v~L~C~--g~p  139 (204)
T 1sy6_A           85 ADDAK--KDAAKK---DDA------KKDDAK----KDGS------DGNEEMGGITQT--PYKVSISGTTVILTCP--QYP  139 (204)
T ss_dssp             -------------------------------------------------------CC--CCEEEEETTEEEEECS--CCC
T ss_pred             ccccc--cccccc---ccc------cccccc----cccc------cccccccceecC--CceeeecCCcEEEEcC--CCC
Confidence            00000  000000   000      000000    0000      000001222111  12334 8999999999  899


Q ss_pred             CCceEEEeCCEEecCCCC-eeEEeeCCeEEEEEccC-CCCCCceeEEEEEEcCCcc
Q psy2775         587 APSIVWFRNNKPLLSSPK-KREIFDGENIILELKEA-DSETDAGDYKVVATNELGS  640 (785)
Q Consensus       587 ~p~v~W~~~~~~i~~~~~-~~~~~~~~~~~L~i~~~-~~~~d~G~Y~C~a~n~~g~  640 (785)
                      .|.|+|+|+|..+....+ ..+...  ..+|.|.++ .. +|+|.|+|.|.|..|.
T Consensus       140 ~p~i~W~k~~~~l~~~~~~~~~~~~--~~~L~I~~v~~~-~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          140 GSEILWQHNDKNIGGDEDDKNIGSD--EDHLSLKEFSEL-EQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             SSCEEEEETTEEESCCTTCTTEEEE--TTEEEETTCCHH-HHCEEEEEEETTSCGG
T ss_pred             CCceEEEECCEECCCccCCceEecC--CCEEEEeeCCcc-ccCEEEEEEeccCCCC
Confidence            999999999999865422 222222  456999999 88 9999999999999996

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=1.4e-19  Score=173.80  Aligned_cols=173  Identities=18%  Similarity=0.214  Sum_probs=122.0

Q ss_pred             CCCeEEecCCcEEEEEEEeC-CCceEEEEEC--CEEcc------------cCCCEEEEEeCcEEEEEEccCCCCCcEEEE
Q psy2775         422 LQDVKVSRDEKASFEIELTK-GDALVKWYKD--GKEIA------------FSENVTLSIDGKKQKLIIFSAGLEDAGEYS  486 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  486 (785)
                      +....+.+|++++|.|.+.+ +.+.+.|+|+  +..+.            ...++.+...+....|.|.+++.+|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            55678899999999999876 4567999985  33221            135677666677789999999999999999


Q ss_pred             EEEeec-Ccc---eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEe
Q psy2775         487 CRVGDT-GDK---ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI  562 (785)
Q Consensus       487 C~a~n~-g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~  562 (785)
                      |.|.|. +..   .....|.|...+.                                                .+|.+.
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~------------------------------------------------~~p~v~  117 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPK------------------------------------------------SSPKVT  117 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCC------------------------------------------------BCCEEE
T ss_pred             EEEEcccCcccccCCceEEEEccCCC------------------------------------------------CCCEEE
Confidence            999973 211   2335566653210                                                013333


Q ss_pred             eeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCeeE-EeeCC----eEEEEEccCCCCCCceeEEEEEE
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~~-~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      .......+.+|+.++|.|.+.|. |+ |.|+|+|+|..+..+..... ..+++    .++|.|.++.. +|+|.|+|.|.
T Consensus       118 ~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~  196 (212)
T 1nfd_E          118 VFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQW-KSHNRVSCQVT  196 (212)
T ss_dssp             CCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHH-HTCSCEEEEEE
T ss_pred             eeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhc-CCCCeEEEEEE
Confidence            32223345689999999999998 55 79999999999865432111 11111    24599999998 99999999999


Q ss_pred             cCCcceEE
Q psy2775         636 NELGSATH  643 (785)
Q Consensus       636 n~~g~~~~  643 (785)
                      |..+....
T Consensus       197 n~~~~~~~  204 (212)
T 1nfd_E          197 HEGETVEK  204 (212)
T ss_dssp             CTTTTCCC
T ss_pred             eCCceEEE
Confidence            99876443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.78  E-value=2.2e-18  Score=166.37  Aligned_cols=176  Identities=14%  Similarity=0.170  Sum_probs=118.9

Q ss_pred             CCCeEEecCCcEEEEEEEeC-C--CceEEEEEC--CEEcc-----------------cCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTK-G--DALVKWYKD--GKEIA-----------------FSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +....+.+|++++|.|.+.+ +  .+.+.|+|+  +..+.                 ...++.+..+  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            34567889999999999997 3  578999996  33221                 1345665543  34578999999


Q ss_pred             CCCCcEEEEEEEeecC-c----ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         478 GLEDAGEYSCRVGDTG-D----KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~g-~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      +.+|+|.|+|.|.|.. .    ....+.|.|...+.                                            
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------------  122 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT--------------------------------------------  122 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC--------------------------------------------
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCC--------------------------------------------
Confidence            9999999999999963 1    12346677765310                                            


Q ss_pred             CCCCCCCeEeeeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCCCCeeEEeeC---CeEEEEEccCCCCCCc
Q psy2775         553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREIFDG---ENIILELKEADSETDA  627 (785)
Q Consensus       553 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~~~~~~~~~~---~~~~L~i~~~~~~~d~  627 (785)
                          .+|.+........+.+|+.++|.|.+.| +|.| .|+|+|+|..+...........+   ..+.|.|... . .|.
T Consensus       123 ----~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~-~d~  196 (219)
T 1c1e_H          123 ----TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-P-RPS  196 (219)
T ss_dssp             ----BCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESS-S-TTT
T ss_pred             ----CCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecc-c-CCC
Confidence                0133333222335678999999999999 8999 99999999864211111111111   1246888444 4 466


Q ss_pred             eeEEEEEEcCCcceEEEEEE
Q psy2775         628 GDYKVVATNELGSATHGARV  647 (785)
Q Consensus       628 G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      |.|+|.|.|..|......+|
T Consensus       197 g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          197 ETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             SCCEEEEEEGGGTEEEEEEC
T ss_pred             CEEEEEEEeCCCCccEEEec
Confidence            99999999999877655544

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=1.1e-19  Score=174.72  Aligned_cols=172  Identities=17%  Similarity=0.210  Sum_probs=123.0

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EEcc------------CCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPLQ------------ETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +.. |..+.+.+|++++|.|.+.+.|.+.|.|++++  ..+.            ...++.+....    ....|+|.+++
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~   77 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG----TTATLTISGAQ   77 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEETTCC
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeC----CEEEEEECcCC
Confidence            455 88899999999999999988777889999853  2220            12344443322    12469999999


Q ss_pred             CCCCeEEEEEEEcC-CeeE--EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeECCEEcc
Q psy2775          81 KREEGVYTVVAKNR-EGEA--KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKDGKLIK  155 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~-~~~~--~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~g~~~~  155 (785)
                      .+|+|.|+|.|.|. .+..  .....|.|......+|.+........+.+|+.+.|.|.+.|. |+ +.|+|++||..+.
T Consensus        78 ~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~  157 (212)
T 1nfd_E           78 PEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIN  157 (212)
T ss_dssp             GGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcC
Confidence            99999999999962 2221  223456665433456777665544556689999999999886 54 7999999999886


Q ss_pred             cceEE----E-eC---CEEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         156 DRQIT----S-EK---NTHTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       156 ~~~~~----~-~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      .....    . .+   ..+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          158 DGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             SSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            54210    0 11   1245889999999999999999998754

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.78  E-value=1.4e-18  Score=167.39  Aligned_cols=171  Identities=16%  Similarity=0.175  Sum_probs=118.6

Q ss_pred             eeecCCceEecCCCeEEEEEEE-EecC-CCeeEEEECCE--Ec------------cCCCCEEEeecCCccceEEEEEEcc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRL-VAVP-EPDLLWYYNGE--PL------------QETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~-~g~p-~~~i~W~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      |.. |..+.+.+|++++|.|.+ .+.+ .+.|.|++++.  .+            ....++.+...+    ..++|+|.+
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~   78 (216)
T 2xzc_L            4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSG----TSATLGITG   78 (216)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET----TEEEEEECS
T ss_pred             EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccC----CEEEEEECC
Confidence            444 778999999999999995 4432 57899999542  11            012344433211    235699999


Q ss_pred             cCCCCCeEEEEEEEcCCe--eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEEEeECCEEc
Q psy2775          79 IKKREEGVYTVVAKNREG--EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLI  154 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~--~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W~~~g~~~  154 (785)
                      ++.+|+|.|+|.|.|..+  .......|.|.. ...+|.+...........|+.+.|.|.+.| .|++ .|+|++||..+
T Consensus        79 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~  157 (216)
T 2xzc_L           79 LQTGDEADYYCGTWDSSLNPVFGGGTKLEIKR-TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ  157 (216)
T ss_dssp             CCGGGCEEEEEEEECTTSCEEEBCCEEEEECC-CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CCcccCEEEEEEEEeCCCcceECCCEEEEEcC-CCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeec
Confidence            999999999999999876  222334566642 234676665333333446899999999988 4554 89999999988


Q ss_pred             ccc-eEE----E-eCC----EEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         155 KDR-QIT----S-EKN----THTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       155 ~~~-~~~----~-~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      ... ...    . .++    .+.|.|..+..+|+|.|+|.|.|....
T Consensus       158 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          158 SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            665 111    1 111    237999999999999999999998754

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.78  E-value=6.5e-18  Score=167.36  Aligned_cols=185  Identities=11%  Similarity=0.202  Sum_probs=127.7

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c--------------cCCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L--------------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~--------------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+..+.+.+|++|+|.|.+.+.+  .+.+.||+..  ..   +              ....++.+..+...  ...+|+|
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~I   85 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSS--STAYLEL   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGG--TEEEEEE
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCC--CEEEEEE
Confidence            34557799999999999998866  6789999842  11   1              01234444332211  2356999


Q ss_pred             cccCCCCCeEEEEEEEcC----CeeEEEEeeEEEeCC------------CCCCCceecCCCceEeccCCcEEEEEEEecc
Q psy2775          77 KSIKKREEGVYTVVAKNR----EGEAKMDIPVKVNTG------------KPEKPSILEPLHDVSITEGESAVLSVQVGGE  140 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~----~~~~~~~~~v~v~~~------------~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~  140 (785)
                      .+++.+|+|.|.|.+.+.    .+.......|.|...            .+.+|.+...+....+.+|+.++|.|.+.+.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  165 (256)
T 3umt_A           86 RSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQD  165 (256)
T ss_dssp             CSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecC
Confidence            999999999999999987    333334456777531            1126677777778899999999999999988


Q ss_pred             CCCeEEEeEC--CEEcc-------------cc--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE-EEEEEEeec
Q psy2775         141 PSPKVEWYKD--GKLIK-------------DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANLNVDP  202 (785)
Q Consensus       141 p~~~v~W~~~--g~~~~-------------~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~  202 (785)
                      +.+.+.|+|+  +..+.             ..  .........+|+|.+++.+|+|.|.|.|.+...... ..+.|.|..
T Consensus       166 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~  245 (256)
T 3umt_A          166 IGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR  245 (256)
T ss_dssp             CTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence            8889999983  22211             01  122344567899999999999999999998654333 247788875


Q ss_pred             CC
Q psy2775         203 YE  204 (785)
Q Consensus       203 ~~  204 (785)
                      .+
T Consensus       246 ~~  247 (256)
T 3umt_A          246 AA  247 (256)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.78  E-value=1.3e-17  Score=165.42  Aligned_cols=191  Identities=12%  Similarity=0.136  Sum_probs=129.4

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECC--E---Ec-------------cCCCCEEEeecCCccce
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG--E---PL-------------QETDEVVFSDQSDMHSY   70 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~---~~-------------~~~~~~~~~~~~~~~~~   70 (785)
                      .++.....|..+.+.+|++|+|.|.+.+.  +.+.+.|++..  .   .+             ....++.+..+...  .
T Consensus         7 ~~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~   84 (257)
T 3gkz_A            7 DKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSK--N   84 (257)
T ss_dssp             --CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGG--T
T ss_pred             CccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCC--c
Confidence            34445667788889999999999999884  46899999842  1   11             01234444332211  2


Q ss_pred             EEEEEEcccCCCCCeEEEEEEEcC----CeeEEEEeeEEEeCCC----------CCCCceecCCCceEeccCCcEEEEEE
Q psy2775          71 VSIVTIKSIKKREEGVYTVVAKNR----EGEAKMDIPVKVNTGK----------PEKPSILEPLHDVSITEGESAVLSVQ  136 (785)
Q Consensus        71 ~~~L~i~~~~~~D~G~Y~C~a~~~----~~~~~~~~~v~v~~~~----------~~~p~i~~~~~~~~~~~G~~v~l~C~  136 (785)
                      ..+|+|.+++.+|+|.|+|.|.|.    .........|.|....          ..+|.+...+....+.+|+.++|.|.
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  164 (257)
T 3gkz_A           85 QVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCS  164 (257)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEE
T ss_pred             eEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEE
Confidence            356999999999999999999986    2222334556665320          13466777777789999999999999


Q ss_pred             EeccCCC-eEEEeEC--CEEccc-------------c--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE-EEE
Q psy2775         137 VGGEPSP-KVEWYKD--GKLIKD-------------R--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AAN  197 (785)
Q Consensus       137 ~~g~p~~-~v~W~~~--g~~~~~-------------~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~  197 (785)
                      +.+.+.+ .+.|+|.  +..+..             .  .........+|.|.+++.+|+|.|.|.|.+.....-. ...
T Consensus       165 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~  244 (257)
T 3gkz_A          165 ASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTK  244 (257)
T ss_dssp             ESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEE
Confidence            9888777 9999983  332210             1  1123345678999999999999999999875433222 366


Q ss_pred             EEeecC
Q psy2775         198 LNVDPY  203 (785)
Q Consensus       198 l~V~~~  203 (785)
                      |.|...
T Consensus       245 l~v~~~  250 (257)
T 3gkz_A          245 LEIKRA  250 (257)
T ss_dssp             EEECCC
T ss_pred             EEEEeC
Confidence            777643

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.78  E-value=7.9e-18  Score=166.74  Aligned_cols=189  Identities=12%  Similarity=0.114  Sum_probs=131.1

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeC---CCceEEEEECC--EEc-----------------ccCCCEEEEEe--CcE
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTK---GDALVKWYKDG--KEI-----------------AFSENVTLSID--GKK  469 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~  469 (785)
                      .++.+...+..+.+.+|++++|.|.+.+   +.+.+.|++..  ..+                 ....++.+..+  +..
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            3566667788899999999999999988   46679999732  111                 11246666644  346


Q ss_pred             EEEEEccCCCCCcEEEEEEEeec-------------CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCc
Q psy2775         470 QKLIIFSAGLEDAGEYSCRVGDT-------------GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPD  536 (785)
Q Consensus       470 ~~L~i~~~~~~d~G~Y~C~a~n~-------------g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (785)
                      ..|+|.+++.+|+|.|.|.|.|.             +.......|.|..++...... +                     
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~-~---------------------  142 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGG-G---------------------  142 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC-----------------------------
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccccc-c---------------------
Confidence            78999999999999999999984             112334667776542110000 0                     


Q ss_pred             eeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCC-CceEEEeC--CEEec------------C
Q psy2775         537 IQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRN--NKPLL------------S  601 (785)
Q Consensus       537 ~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~~--~~~i~------------~  601 (785)
                                     ......+|.+...+....+.+|++++|.|.+.+.|. +.+.|||.  +..+.            .
T Consensus       143 ---------------~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~  207 (256)
T 3juy_B          143 ---------------SGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGI  207 (256)
T ss_dssp             ------------------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTC
T ss_pred             ---------------cCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCcc
Confidence                           000011356666677889999999999999999887 89999983  22211            2


Q ss_pred             CCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         602 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       602 ~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ..++.....+...+|+|.+++. +|+|.|.|.|.|..+.
T Consensus       208 ~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~~~~~  245 (256)
T 3juy_B          208 SDRFSGSGSGTDFTLTITRVEP-EDFALYYCQVYGASSY  245 (256)
T ss_dssp             CTTEEEEEETTEEEEEESSCCG-GGCSEEEEEECCSSCC
T ss_pred             CCcEEEEccCCEEEEEECCCCH-hHCEEEEEEEeeCCCc
Confidence            3455555666778899999999 9999999999996543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.78  E-value=5.3e-18  Score=170.44  Aligned_cols=185  Identities=13%  Similarity=0.237  Sum_probs=129.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEcc-----------------CCCCEEEeecCCccceEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPLQ-----------------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~   73 (785)
                      +...|..+.+.+|++|+|.|.+.+.+  .+.+.|++++  ..+.                 ...++.+..+...  ...+
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~s  106 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSS--NTAY  106 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTT--TEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCC--CeEE
Confidence            45678899999999999999998875  5789999964  1110                 1234444332111  2256


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCe---eE--EEEeeEEEeCCC-----------CCCCceecCCCceEeccCCcEEEEEEE
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREG---EA--KMDIPVKVNTGK-----------PEKPSILEPLHDVSITEGESAVLSVQV  137 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~---~~--~~~~~v~v~~~~-----------~~~p~i~~~~~~~~~~~G~~v~l~C~~  137 (785)
                      |+|.+++.+|+|.|.|.+.|..+   ..  .....|.|...+           ..++.+...+....+.+|+.++|.|.+
T Consensus       107 L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  186 (282)
T 1qok_A          107 LQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSA  186 (282)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             EEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEe
Confidence            99999999999999999999865   11  123456665422           124556666677889999999999999


Q ss_pred             eccCCCeEEEeE--CCEEcc-------------cc--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCee-EEEEEEEE
Q psy2775         138 GGEPSPKVEWYK--DGKLIK-------------DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLN  199 (785)
Q Consensus       138 ~g~p~~~v~W~~--~g~~~~-------------~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~  199 (785)
                      .+.+ +.+.|+|  +|..+.             ..  .........+|+|.+++.+|+|.|.|.|.+.... ....+.|.
T Consensus       187 ~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~  265 (282)
T 1qok_A          187 SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLE  265 (282)
T ss_dssp             SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEE
T ss_pred             cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEE
Confidence            9888 8999999  665441             11  1122345678999999999999999999875432 23346777


Q ss_pred             eec
Q psy2775         200 VDP  202 (785)
Q Consensus       200 V~~  202 (785)
                      |..
T Consensus       266 V~~  268 (282)
T 1qok_A          266 LKR  268 (282)
T ss_dssp             EC-
T ss_pred             Eec
Confidence            763

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=6.3e-19  Score=172.27  Aligned_cols=177  Identities=17%  Similarity=0.150  Sum_probs=123.3

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCC-C-eeEEEECCE--Ec------------cCCCCEEEeecCCccceEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPE-P-DLLWYYNGE--PL------------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~-~i~W~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .+.+.. |..+.+.+|++++|.|.+.+.+. + .+.|++++.  .+            ....++......    ...+|+
T Consensus        20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~   94 (234)
T 2j6e_L           20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSG----TSASLA   94 (234)
T ss_dssp             CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEET----TEEEEE
T ss_pred             ccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecC----CeEEEE
Confidence            455555 88899999999999999987543 4 799998632  11            012344333211    124699


Q ss_pred             EcccCCCCCeEEEEEEEcCCe---eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccC-C-CeEEEeEC
Q psy2775          76 IKSIKKREEGVYTVVAKNREG---EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP-S-PKVEWYKD  150 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~---~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-~-~~v~W~~~  150 (785)
                      |.+++.+|+|.|+|.|.+..+   .......|.|......+|.+...........|+.+.|.|.+.|.+ + +.|+|++|
T Consensus        95 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  174 (234)
T 2j6e_L           95 ISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKAD  174 (234)
T ss_dssp             EESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEET
T ss_pred             ECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEEC
Confidence            999999999999999999876   222344566643333456665433333345688999999998854 3 38999999


Q ss_pred             CEEcccceEE-----Ee----CCEEEEEEcccCCCCcEEEEEEEEcCCeeEE
Q psy2775         151 GKLIKDRQIT-----SE----KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE  193 (785)
Q Consensus       151 g~~~~~~~~~-----~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  193 (785)
                      |..+......     ..    ...+.|.|.++..+|+|.|+|.|.|..+..+
T Consensus       175 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  226 (234)
T 2j6e_L          175 GAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  226 (234)
T ss_dssp             TEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred             CEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence            9988654211     01    1235799999999999999999999876543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.77  E-value=3.8e-18  Score=167.11  Aligned_cols=180  Identities=17%  Similarity=0.183  Sum_probs=126.7

Q ss_pred             cccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECC--E------------EcccCCCEEEEEeCcEEEEEEccCCCCC
Q psy2775         417 EISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG--K------------EIAFSENVTLSIDGKKQKLIIFSAGLED  481 (785)
Q Consensus       417 ~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~--~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d  481 (785)
                      .+...+....+.+|++++|.|.+.+ +.+.+.|+|.+  .            ......++.....+....|.|.+++.+|
T Consensus        26 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  105 (237)
T 3sob_L           26 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPED  105 (237)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhh
Confidence            3444556778999999999999988 47789999832  1            1112356776666677899999999999


Q ss_pred             cEEEEEEEeec-C-cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCC
Q psy2775         482 AGEYSCRVGDT-G-DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP  559 (785)
Q Consensus       482 ~G~Y~C~a~n~-g-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p  559 (785)
                      +|.|+|.|.|. + .......|.|.....                                                 +|
T Consensus       106 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------------~p  136 (237)
T 3sob_L          106 FATYYCQQSYTTPPTFGQGTKVEIKRTVA-------------------------------------------------AP  136 (237)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEECCCB-------------------------------------------------CC
T ss_pred             CeEEEEeeccCCceEEcCcEEEEEecCCC-------------------------------------------------CC
Confidence            99999999986 3 223445677755211                                                 14


Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecC-C-CCceEEEeCCEEecCCC-C-eeEEe-eCC----eEEEEEccCCCCCCceeE
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSP-K-KREIF-DGE----NIILELKEADSETDAGDY  630 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~-P-~p~v~W~~~~~~i~~~~-~-~~~~~-~~~----~~~L~i~~~~~~~d~G~Y  630 (785)
                      .+........+.+|+.++|.|.+.|. | .|.|+|+|+|..+..+. . ..... .++    ..+|.|..... +|+|.|
T Consensus       137 ~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y  215 (237)
T 3sob_L          137 SVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVY  215 (237)
T ss_dssp             EEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEE
T ss_pred             ceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHc-cCCCcE
Confidence            44433334455679999999999985 5 57999999999886532 1 01111 111    35688999888 899999


Q ss_pred             EEEEEcCCcceEEEEE
Q psy2775         631 KVVATNELGSATHGAR  646 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~  646 (785)
                      +|.|.|.......+.+
T Consensus       216 ~C~a~n~~~~~~~~~~  231 (237)
T 3sob_L          216 ACEVTHQGLSSPVTKS  231 (237)
T ss_dssp             EEEEECTTCSSCEEEE
T ss_pred             EEEEeeCCCCCceeee
Confidence            9999999875544333

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.77  E-value=2.1e-18  Score=165.78  Aligned_cols=176  Identities=14%  Similarity=0.194  Sum_probs=124.2

Q ss_pred             cccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECC---EE--c---------ccCCCEEEEEeCcEEEEEEccCCCCC
Q psy2775         417 EISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG---KE--I---------AFSENVTLSIDGKKQKLIIFSAGLED  481 (785)
Q Consensus       417 ~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~---~~--~---------~~~~~~~~~~~~~~~~L~i~~~~~~d  481 (785)
                      .+..++..+.+.+|++++|.|.+.+ +.+.+.|+|.+   ..  +         ....++.+...+....|+|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            3444566778999999999999998 57889999832   11  0         12456666666677899999999999


Q ss_pred             cEEEEEEEeec-C-cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCC
Q psy2775         482 AGEYSCRVGDT-G-DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP  559 (785)
Q Consensus       482 ~G~Y~C~a~n~-g-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p  559 (785)
                      +|.|+|.|.|. + .......|.|.....                                                 +|
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------------~p  113 (213)
T 3r06_A           83 IGSYYCQQYYNYPWTFGPGTKLEIKRADA-------------------------------------------------KP  113 (213)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEECCCCB-------------------------------------------------CC
T ss_pred             CEEEEEecccCCceEEcCCceEEEeccCC-------------------------------------------------Cc
Confidence            99999999986 3 233446677733211                                                 14


Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCCC-Ce-eEEe-eCC----eEEEEEccCCCCCCceeE
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSP-KK-REIF-DGE----NIILELKEADSETDAGDY  630 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~-~~-~~~~-~~~----~~~L~i~~~~~~~d~G~Y  630 (785)
                      .+........+..|+.++|.|.+.|.|++  .|.|+|+|..+..+. .. .... .++    .++|.|..... +|+|.|
T Consensus       114 ~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~g~Y  192 (213)
T 3r06_A          114 TVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADY-ERHNLY  192 (213)
T ss_dssp             EEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEE
T ss_pred             eeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHh-ccCCeE
Confidence            44444445556678899999999987643  899999999986542 11 1111 111    24688888877 899999


Q ss_pred             EEEEEcCCcceE
Q psy2775         631 KVVATNELGSAT  642 (785)
Q Consensus       631 ~C~a~n~~g~~~  642 (785)
                      +|.|.|......
T Consensus       193 tC~v~n~~~~~~  204 (213)
T 3r06_A          193 TCEVTHKTSTAA  204 (213)
T ss_dssp             EEEEEETTCSSC
T ss_pred             EEEEEecccCcc
Confidence            999999875443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.77  E-value=7.5e-18  Score=159.97  Aligned_cols=165  Identities=13%  Similarity=0.135  Sum_probs=120.0

Q ss_pred             CCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceE----EEeCCEEEEEEcccCCCCcEEEEEEEE
Q psy2775         111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKNTHTLTLIQCSTKDKGRYSVKVT  186 (785)
Q Consensus       111 ~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~  186 (785)
                      ..+|.|...+. ..+.+|+.++|.|.+. .+.+.+.|+|+|..+.....    ........|.|.+++.+|+|.|+|.|.
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            35677766554 6788999999999997 46779999999976643221    112235689999999999999999998


Q ss_pred             cCCe-----eEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEcc
Q psy2775         187 NKEG-----TVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG  261 (785)
Q Consensus       187 n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g  261 (785)
                      +...     ..+..+.|.|....                             .+|.+...+. ..+.+|+.++|.|.+.+
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~-----------------------------~~p~i~~~p~-~~v~~G~~v~L~C~~~~  133 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLY-----------------------------EKPSLSAQPG-PTVLAGENVTLSCSSRS  133 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSS-----------------------------CCCEEEEESC-SEECTTCEEEEEEEESS
T ss_pred             cCCCCccccCCCCCEEEEeeccC-----------------------------CCCceecCCC-CccCCCCeEEEEEeCCC
Confidence            7531     22344667776432                             3466665554 46889999999999976


Q ss_pred             CCCCeEEEEECCEEcccce--EEEeC--CEEEEEEccCCCCCCeEEEEEEEeC
Q psy2775         262 EPSPKVEWYKDGKLIKDRQ--ITSEK--NTHTLTLIQCSTKDKGRYSVKVTNK  310 (785)
Q Consensus       262 ~p~~~v~W~~~~~~l~~~~--~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~n~  310 (785)
                       +.+.+.|+|+|..+....  .....  ....|.|.+++  |+|.|+|.|.+.
T Consensus       134 -~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          134 -SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             -CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             -CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence             567999999998765221  11122  25689999998  999999999876

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.77  E-value=2e-18  Score=165.39  Aligned_cols=174  Identities=11%  Similarity=0.181  Sum_probs=120.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEcc----------------CCCCEEEeecCCccceEEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPLQ----------------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|+|++  ....                ...++.+..+...  ...+|+|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~I   82 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSK--NQYYLDL   82 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGG--TEEEEEE
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCC--CEEEEEE
Confidence            346778999999999999998875  3789999853  2110                1234444432211  1246999


Q ss_pred             cccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeECCEEc
Q psy2775          77 KSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGKLI  154 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~~g~~~  154 (785)
                      .+++.+|+|.|+|.+.+.. .......|.|....+.+|.+........+..|+.+.|.|.+.|. |.+ .|.|+++|..+
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~  161 (210)
T 3d9a_H           83 NSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  161 (210)
T ss_dssp             CSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CCCCcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence            9999999999999999863 11123456665444456766544333456789999999999886 877 99999998764


Q ss_pred             ccc---eEEEeC---CEEEEEEcccCCCCcEEEEEEEEcCCeeEEE
Q psy2775         155 KDR---QITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVES  194 (785)
Q Consensus       155 ~~~---~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  194 (785)
                      ...   .....+   ....|.|.+...+| |.|+|.|.|..|....
T Consensus       162 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          162 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             ceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            311   111111   13568999988877 9999999999886543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=4.8e-18  Score=166.66  Aligned_cols=171  Identities=15%  Similarity=0.162  Sum_probs=121.2

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecC----CCeeEEEECC--EE---cc---------CCCCEEEeecCCccceEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVP----EPDLLWYYNG--EP---LQ---------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p----~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ..|...|..+.+.+|++|+|.|.+.+.|    .+.|.|++++  ..   +.         ...++.+...+    ...+|
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L   77 (240)
T 1moe_A            2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR----TDFTL   77 (240)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEE
T ss_pred             CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecC----CeEEE
Confidence            3567788999999999999999999887    7889999953  11   10         12344443322    12469


Q ss_pred             EEcccCCCCCeEEEEEEEcCCee-EEEEeeEEEeCCCC--CCCceecCCCceEeccCCcEEEEEEEeccC--CCeEEEeE
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGE-AKMDIPVKVNTGKP--EKPSILEPLHDVSITEGESAVLSVQVGGEP--SPKVEWYK  149 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~-~~~~~~v~v~~~~~--~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p--~~~v~W~~  149 (785)
                      +|.+++.+|+|.|+|.|.|..+. ......|.|.....  .++.+...+....+.+|+.++|.|.+.+.|  .+.+.|+|
T Consensus        78 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k  157 (240)
T 1moe_A           78 IIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVK  157 (240)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             EEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEE
Confidence            99999999999999999987553 22345666654221  223344455677899999999999999876  35999999


Q ss_pred             C--CEEcc------------------cceEEE----eCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         150 D--GKLIK------------------DRQITS----EKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       150 ~--g~~~~------------------~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                      +  |..+.                  ...+..    .....+|.|.+++.+|+|.|+|.|.+
T Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          158 QRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             ECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            5  32221                  011111    13457899999999999999999984

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.77  E-value=4.9e-18  Score=161.52  Aligned_cols=169  Identities=16%  Similarity=0.207  Sum_probs=115.8

Q ss_pred             CeEEecCCcEEEEEEEeC-----CCceEEEEECCEEccc------------CCCEEEEEeCcEEEEEEccCCCCCcEEEE
Q psy2775         424 DVKVSRDEKASFEIELTK-----GDALVKWYKDGKEIAF------------SENVTLSIDGKKQKLIIFSAGLEDAGEYS  486 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~-----~~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  486 (785)
                      .+.+.+|++++|.|.+..     +.+.+.|++++..+..            ..+..+.. .....|.|.+++.+|+|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEcc-CCCcEEEEecccchhCeEEE
Confidence            456889999999999963     4567999999987621            12333211 22347999999999999999


Q ss_pred             EEEeec-Ccc-----eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCe
Q psy2775         487 CRVGDT-GDK-----ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL  560 (785)
Q Consensus       487 C~a~n~-g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~  560 (785)
                      |.|.|. |..     ...+.|.|..++.     .                                            |.
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~-----~--------------------------------------------p~  112 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFP-----T--------------------------------------------PS  112 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCC-----C--------------------------------------------CE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCC-----C--------------------------------------------Cc
Confidence            999996 443     2456666665421     1                                            22


Q ss_pred             EeeeeeeeeeeecCeEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeEEeeC-CeEE-EEEccCCCCCCceeEEEEEEcC
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDG-ENII-LELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~~-~~~~-L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      +..    .....|+.++|.|.+. |+|.|.|+|+|+|..+............ +... ..+..+.. +|+|.|+|.|.|.
T Consensus       113 ~~~----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~g~Y~C~a~n~  187 (201)
T 1dr9_A          113 ISD----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM-TTNHSFMCLIKYG  187 (201)
T ss_dssp             EEE----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET-TSCEEEEEEEEET
T ss_pred             eEe----ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEe-cCCCEEEEEEecC
Confidence            211    1124588999999994 9999999999999988754322222212 2222 23345556 8999999999999


Q ss_pred             CcceEEEEEE
Q psy2775         638 LGSATHGARV  647 (785)
Q Consensus       638 ~g~~~~~~~l  647 (785)
                      .|.....+++
T Consensus       188 ~~~~s~~~~~  197 (201)
T 1dr9_A          188 HLRVNQTFNW  197 (201)
T ss_dssp             TCCEEEEEEE
T ss_pred             cceeeeEEec
Confidence            9988776553

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.77  E-value=1e-18  Score=166.70  Aligned_cols=179  Identities=12%  Similarity=0.166  Sum_probs=119.9

Q ss_pred             CCeeeecCCceE-ecCCCeEEEEEEEEecC----CCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCe
Q psy2775          12 PPTFSKKTKPVY-AEENSEVTLEVRLVAVP----EPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        12 ~p~~~~~~~~~~-v~~G~~v~l~C~~~g~p----~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      |..+...|.... +.+|++++|.|.+.|.+    .+.|.|++++..+...... .....++.....+.|+|.+++.+|+|
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   81 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTC
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCC
Confidence            455566777666 89999999999998874    2489999999776432110 00112222233467999999999999


Q ss_pred             EEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeECCEEcccceE----
Q psy2775          86 VYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKDGKLIKDRQI----  159 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~g~~~~~~~~----  159 (785)
                      .|+|.|.|..+.......+.+......+|.+...+.......|+.+.|.|.+.|. |+ +.|+|++||..+.....    
T Consensus        82 ~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  161 (207)
T 2vol_A           82 EFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPI  161 (207)
T ss_dssp             CEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCE
T ss_pred             EEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCce
Confidence            9999999987743222222221123356776544333333469999999999885 44 38999999998764321    


Q ss_pred             EEeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         160 TSEKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       160 ~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ...++    ...|.|.....+|.|.|+|.|.|...
T Consensus       162 ~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          162 MDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             ECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            11222    23466776667789999999999863

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.77  E-value=1.7e-18  Score=170.78  Aligned_cols=180  Identities=14%  Similarity=0.152  Sum_probs=118.8

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCe-----eEEEECCEEccCC--------CCEEEeecCC------ccceEEEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPD-----LLWYYNGEPLQET--------DEVVFSDQSD------MHSYVSIVTI   76 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~-----i~W~~~~~~~~~~--------~~~~~~~~~~------~~~~~~~L~i   76 (785)
                      ...|..+.+.+|++++|.|.+.|.|.+.     |.|++++......        ..........      ......+|+|
T Consensus         7 v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   86 (248)
T 3pv7_A            7 MMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRL   86 (248)
T ss_dssp             CSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEE
T ss_pred             EeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEe
Confidence            3567788999999999999999887765     9999974322100        0000000000      0011245999


Q ss_pred             cccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEEEeECCEEc
Q psy2775          77 KSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLI  154 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W~~~g~~~  154 (785)
                      .+++.+|+|.|+|.+.+..+.....+.|.|.    .+|.+...+. .....|+.+.|.|.+.| .|.+ .|+|+++|..+
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~----~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A           87 PGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV----ASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKF  161 (248)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEE----BCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSS
T ss_pred             CCCCHHHCeEEEEEEEeCCccceeEEEEEEe----cCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccC
Confidence            9999999999999999998888888888887    3666665443 33456788889999988 7888 99999999654


Q ss_pred             ccc----------eEEE-eCC----EEEEEEcccCCCCcEEEEEEEEcCCee--EEEEEEEEe
Q psy2775         155 KDR----------QITS-EKN----THTLTLIQCSTKDKGRYSVKVTNKEGT--VESAANLNV  200 (785)
Q Consensus       155 ~~~----------~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V  200 (785)
                      ...          .... ..+    ...|.|.....+|.|.|+|.|.|..+.  ....+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          162 PHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            321          1111 111    356888899999999999999999876  444555555

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.77  E-value=3.9e-19  Score=172.17  Aligned_cols=176  Identities=17%  Similarity=0.256  Sum_probs=120.9

Q ss_pred             CeEEecCCcEEEEEEEeCCC------ceEEEEECCEEc-------------ccCCCEEEEEe---CcEEEEEEccCCCCC
Q psy2775         424 DVKVSRDEKASFEIELTKGD------ALVKWYKDGKEI-------------AFSENVTLSID---GKKQKLIIFSAGLED  481 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~~~------~~i~W~~~~~~~-------------~~~~~~~~~~~---~~~~~L~i~~~~~~d  481 (785)
                      .+.+.+|++++|.|.+.+.+      +.+.|++++...             ....+..+..+   .....|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            45577999999999988732      679999986432             11223222211   013579999999999


Q ss_pred             cEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeE
Q psy2775         482 AGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF  561 (785)
Q Consensus       482 ~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~  561 (785)
                      +|.|+|.+.|.+.....+.|.|..++.                                                 +|.+
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~l~V~~~~~-------------------------------------------------~p~i  114 (222)
T 4i0k_A           84 EGSYTCFVSIQDFDSAAVSLQVAAPYS-------------------------------------------------KPSM  114 (222)
T ss_dssp             CSCEEEEEEECCCCCCCCCCCCCBCCC-------------------------------------------------CCEE
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEcCCC-------------------------------------------------CCcE
Confidence            999999999875555555666654321                                                 1333


Q ss_pred             eeeeeeeeeeecCeEEEEEEE-ecCCCCceEEEe-CCEEecCCCCeeEEee--CCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         562 IERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFR-NNKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~-~~~~i~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .... ...+.+|+.++|.|.+ .|+|.|.+.|++ ++..+...........  +....|.|.++.. +|+|.|+|.|.|.
T Consensus       115 ~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n~  192 (222)
T 4i0k_A          115 TLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVL-GANGTYSCLVRNP  192 (222)
T ss_dssp             ECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEEC-CTTCEEEEEEEET
T ss_pred             EeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEe-CCCCEEEEEEECC
Confidence            2222 3367789999999999 899999999999 5555533222222222  2234688999999 9999999999999


Q ss_pred             CcceEEEEEEEEE
Q psy2775         638 LGSATHGARVTVD  650 (785)
Q Consensus       638 ~g~~~~~~~l~V~  650 (785)
                      .|....++.|.|.
T Consensus       193 ~g~~~~~~~l~V~  205 (222)
T 4i0k_A          193 VLQQDAHGSVTIT  205 (222)
T ss_dssp             TTTEEEEEEEECC
T ss_pred             CCCCceEEEEEEe
Confidence            9999998888886

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.77  E-value=7.3e-16  Score=177.12  Aligned_cols=424  Identities=15%  Similarity=0.192  Sum_probs=241.2

Q ss_pred             CCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCC-CCeEEEEEEEcCCeeEEEEeeE
Q psy2775          26 ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR-EEGVYTVVAKNREGEAKMDIPV  104 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~~~~~~~~~~~~v  104 (785)
                      .+.++.|.|.+.|.|.+.+.|.++|..+..-.+             ..|.|..+... ..+.|+|.+.+..|...... +
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~-------------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~-v  155 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR-------------AELAISTFWPNFYQVIFEVITSGHQGYLAIDE-V  155 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCSSCEE-------------EEEEECCCTTSCEEEEEEEEECSSCCEEEECC-B
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCCceeE-------------EEEEEeecCCCceEEEEEEEecCCceEEEEee-E
Confidence            345899999999999999999999976532111             23566655333 35888998877777654332 2


Q ss_pred             EEeC-CCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEE-Ee--ECCEEcccceEEEe---CCEEEEEEcccCCCC
Q psy2775         105 KVNT-GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE-WY--KDGKLIKDRQITSE---KNTHTLTLIQCSTKD  177 (785)
Q Consensus       105 ~v~~-~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~-W~--~~g~~~~~~~~~~~---~~~~~L~i~~~~~~d  177 (785)
                      .+.. .-..+|.+. .+....+..|+.+.|.|.+.|.|.+.+. |+  +||..+........   ....+|.|.++...|
T Consensus       156 ~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d  234 (731)
T 2v5y_A          156 KVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRD  234 (731)
T ss_dssp             EEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTT
T ss_pred             Eeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEccccccc
Confidence            2322 223566666 4567899999999999999999999988 88  68877654432211   224689999999999


Q ss_pred             cEEEEEEEEcCCee-EEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEE
Q psy2775         178 KGRYSVKVTNKEGT-VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLS  256 (785)
Q Consensus       178 ~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~  256 (785)
                      .|.|+|.|.|..|. .+..+.|.|...+.      +                    +.+|.+..       .....+.|.
T Consensus       235 ~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~------~--------------------~~~p~~~~-------~~~~~v~l~  281 (731)
T 2v5y_A          235 AGKYRCMIRTEGGVGISNYAELVVKEPPV------P--------------------IAPPQLAS-------VGATYLWIQ  281 (731)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEECCCC------B--------------------SSCCEEEE-------ECSSCEEEE
T ss_pred             CeEEEEEEECCCCCcceeeEEEEEecCCC------C--------------------CCCcceec-------cCCceEEEE
Confidence            99999999999997 66667888874431      0                    12222221       134567888


Q ss_pred             EEEcc---CCCC---eEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEE--eCCCceEEEEEEEEeccccc
Q psy2775         257 VQVGG---EPSP---KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT--NKEGTVESAANLNVDQGKAE  328 (785)
Q Consensus       257 C~~~g---~p~~---~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--n~~g~~~~~~~l~v~~~~~~  328 (785)
                      |....   ..+.   .|.|...+...   ..........+.|.++...+.+.|+|.|.  |..|....+..+.+......
T Consensus       282 w~~~~~~g~~~i~~Y~v~~~~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~  358 (731)
T 2v5y_A          282 LNANSINGDGPIVAREVEYCTASGSW---NDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCAD  358 (731)
T ss_dssp             CCCSSBSSCSCCCEEEEEEEESSSSC---EEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCC
T ss_pred             eCCcccCCCCccEEEEEEEEECCCCc---eEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCC
Confidence            87532   1221   46666543211   11122233578999999999999999999  98887654433333321111


Q ss_pred             eeeeccceeE--eeCccEEEEEEEcCC--------CCeEEEEECCEEcCCCCcE---EEEEcCcEEEEEEcCCCCCCceE
Q psy2775         329 FIKKLDDLEV--KERENAVLEVEVTSD--------KADVKWFKDGQEIKTSKKV---TIEKKGTIRKLLIRNISVHDEGE  395 (785)
Q Consensus       329 ~~~~~~~~~~--~~g~~~~l~C~~~~~--------~~~v~W~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~  395 (785)
                      ....+....+  .....+.|.......        ...+.|...+...  ....   ..........+.|.++.......
T Consensus       359 p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  436 (731)
T 2v5y_A          359 PMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQ--EQVREEVSWDTENSHPQHTITNLSPYTNVS  436 (731)
T ss_dssp             CSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSS--EEEEEEEECCSSCSSCEEEECSCCSSCEEE
T ss_pred             CCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCC--CccceeEEEEecCCcceEEECCCCCCCEEE
Confidence            1111222222  223455565554211        1134443321000  0000   01111223348899999888888


Q ss_pred             EEEEEeccceEEE---EEEEecCCccccc-C-CCeEEe-cCCcEEEEEEEeC---CCc---eEEEEECCEE---ccc-CC
Q psy2775         396 YTCSLPDQETSAE---LNVVELPPEISVP-L-QDVKVS-RDEKASFEIELTK---GDA---LVKWYKDGKE---IAF-SE  459 (785)
Q Consensus       396 Y~C~a~n~~~~~~---~~v~~~~~~~~~~-~-~~~~v~-~g~~~~l~C~~~~---~~~---~i~W~~~~~~---~~~-~~  459 (785)
                      |+..|.|..+...   +.+.. +...... + ..+... ....+.|......   +..   .|.|...+..   ... ..
T Consensus       437 ~~V~A~n~~G~s~S~~~~~~T-~~~~P~~p~~~~~~~~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~  515 (731)
T 2v5y_A          437 VKLILMNPEGRKESQELIVQT-DEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQ  515 (731)
T ss_dssp             EEEEEECSSCEEECCCEEEEC-CCCCCCCCCTTTCEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCC
T ss_pred             EEEEEEcCCCCCCCceEEEEc-cCCCCCCCCcceEEeeecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCc
Confidence            8888888766532   11211 1111111 1 122222 2455665554321   111   2444432211   000 11


Q ss_pred             CEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEE
Q psy2775         460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVE  504 (785)
Q Consensus       460 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~  504 (785)
                      .......+....++|.++.......|+..|.|. |....+ .+.+.
T Consensus       516 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s-~~~~~  560 (731)
T 2v5y_A          516 SGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA-TNQFT  560 (731)
T ss_dssp             EEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEE-EEEEE
T ss_pred             ceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCc-ccEEE
Confidence            222333444457889999988888888889887 433333 34443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.77  E-value=6.1e-18  Score=169.49  Aligned_cols=188  Identities=15%  Similarity=0.127  Sum_probs=126.2

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE-----Ecc---------CCCCEEEeecCCccceEEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-----PLQ---------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ..+.|...|..+.+.+|++++|.|.+.+.|.+.|.|++++.     .+.         ...++.+...+    ...+|+|
T Consensus        11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I   86 (276)
T 3auv_A           11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG----TDFTLTI   86 (276)
T ss_dssp             -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEE
T ss_pred             cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccC----CeEEEEE
Confidence            35678888999999999999999999988889999998642     111         12344443221    1246999


Q ss_pred             cccCCCCCeEEEEEEEcCCee-EEEEeeEEEeCCCC----------CCCceecCCCceEeccCCcEEEEEEEeccC--CC
Q psy2775          77 KSIKKREEGVYTVVAKNREGE-AKMDIPVKVNTGKP----------EKPSILEPLHDVSITEGESAVLSVQVGGEP--SP  143 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~~-~~~~~~v~v~~~~~----------~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p--~~  143 (785)
                      .+++.+|+|.|+|.|.|..+. ......|.|...+.          .++.+...+....+.+|+.++|.|.+.+.+  .+
T Consensus        87 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~  166 (276)
T 3auv_A           87 SSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDY  166 (276)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             ccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCC
Confidence            999999999999999987543 12223455543210          122233334578899999999999998876  47


Q ss_pred             eEEEeECC--EEc---c---------------cceE--EE--eCCEEEEEEcccCCCCcEEEEEEEEcCC---ee--EEE
Q psy2775         144 KVEWYKDG--KLI---K---------------DRQI--TS--EKNTHTLTLIQCSTKDKGRYSVKVTNKE---GT--VES  194 (785)
Q Consensus       144 ~v~W~~~g--~~~---~---------------~~~~--~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~--~~~  194 (785)
                      .+.|+|++  ..+   .               ...+  ..  .....+|.|.+++.+|+|.|.|.|.|..   +.  ...
T Consensus       167 ~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~  246 (276)
T 3auv_A          167 WIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQ  246 (276)
T ss_dssp             EEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCC
T ss_pred             EEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECC
Confidence            99999953  211   0               0111  11  1345689999999999999999999973   21  122


Q ss_pred             EEEEEeec
Q psy2775         195 AANLNVDP  202 (785)
Q Consensus       195 ~~~l~V~~  202 (785)
                      .+.|.|..
T Consensus       247 gt~l~V~~  254 (276)
T 3auv_A          247 GTLVTVSS  254 (276)
T ss_dssp             CEEEEEC-
T ss_pred             CEEEEEcc
Confidence            36677753

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.77  E-value=7.9e-18  Score=166.41  Aligned_cols=193  Identities=14%  Similarity=0.180  Sum_probs=130.3

Q ss_pred             ccCCCeEEecCCcEEEEEEEeC-C--CceEEEEEC--CEEc-----------------ccCCCEEEEEeC--cEEEEEEc
Q psy2775         420 VPLQDVKVSRDEKASFEIELTK-G--DALVKWYKD--GKEI-----------------AFSENVTLSIDG--KKQKLIIF  475 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~--~~~~-----------------~~~~~~~~~~~~--~~~~L~i~  475 (785)
                      ..+....+.+|++++|.|.+.+ +  .+.+.|+|.  +..+                 ....++.+..+.  ....|+|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            3456778899999999999987 2  568999982  2111                 112466666543  36779999


Q ss_pred             cCCCCCcEEEEEEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         476 SAGLEDAGEYSCRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      +++.+|+|.|+|.|.|. +.. .....|.|...+......  ..                                   .
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~--~~-----------------------------------~  128 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGG--GS-----------------------------------G  128 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC-----------------------------------------
T ss_pred             CCCcccCEEEEEEEeeCCccEECCCcEEEEecCCcccccc--cc-----------------------------------C
Confidence            99999999999999985 332 345677776531100000  00                                   0


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC----ceEEEeCC--EEec------------CCCCeeEEeeCCeEE
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRNN--KPLL------------SSPKKREIFDGENII  615 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~~--~~i~------------~~~~~~~~~~~~~~~  615 (785)
                      ....+|.+...+....+.+|++++|.|.+.|.|.+    .+.|||++  ....            ...++.....+..++
T Consensus       129 ~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  208 (253)
T 3uzq_A          129 GGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFT  208 (253)
T ss_dssp             -----CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE
T ss_pred             CCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEE
Confidence            00012556666667889999999999999999887    99999942  2111            123444445566778


Q ss_pred             EEEccCCCCCCceeEEEEEEcCCcceEEE-EEEEEE
Q psy2775         616 LELKEADSETDAGDYKVVATNELGSATHG-ARVTVD  650 (785)
Q Consensus       616 L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~  650 (785)
                      |+|.+++. +|+|.|.|.|.|..+..... ..|.|.
T Consensus       209 L~I~~v~~-~DsG~Y~C~~~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          209 LTINPVEA-DDVATYFCQRSNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             EEESSCCG-GGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             EEECCCCH-HHCEEEEEEEccCCCcEECCCEEEEEc
Confidence            99999999 99999999999976544332 445554

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.77  E-value=2.5e-18  Score=165.66  Aligned_cols=172  Identities=17%  Similarity=0.191  Sum_probs=118.8

Q ss_pred             CCCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EEc------------ccCCCEEEEEeCcEEEEEEccCCCCCcEE
Q psy2775         422 LQDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KEI------------AFSENVTLSIDGKKQKLIIFSAGLEDAGE  484 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  484 (785)
                      +....+.+|++++|.|.+.+ +  .+.+.|+|++  ..+            ....++.+..++....|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            45678899999999999644 3  4689999953  221            11346666666777899999999999999


Q ss_pred             EEEEEeec-C--cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeE
Q psy2775         485 YSCRVGDT-G--DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF  561 (785)
Q Consensus       485 Y~C~a~n~-g--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~  561 (785)
                      |+|.|.|. +  .......|.|.....                                                 +|.+
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------------~P~v  117 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVA-------------------------------------------------APSV  117 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCB-------------------------------------------------CCEE
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCC-------------------------------------------------CCce
Confidence            99999997 3  122345677653210                                                 1333


Q ss_pred             eeeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCCCCe--eEEe-eCC----eEEEEEccCCCCCCceeEEE
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKK--REIF-DGE----NIILELKEADSETDAGDYKV  632 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~~~~--~~~~-~~~----~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      ........+.+|+.++|.|.+.| .|+| .|+|+|+|..+..+...  .... .++    .+.|.|..+.. +|+|.|+|
T Consensus       118 ~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C  196 (216)
T 2xzc_L          118 FIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYAC  196 (216)
T ss_dssp             EEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEE
T ss_pred             EEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHh-CCCCcEEE
Confidence            33222222346899999999998 4665 89999999988654111  1111 112    23799999988 99999999


Q ss_pred             EEEcCCcceEE
Q psy2775         633 VATNELGSATH  643 (785)
Q Consensus       633 ~a~n~~g~~~~  643 (785)
                      .|.|.......
T Consensus       197 ~a~n~~~~~~~  207 (216)
T 2xzc_L          197 EVTHQGLSSPV  207 (216)
T ss_dssp             EEECTTCSSCE
T ss_pred             EEEcCCCCCce
Confidence            99998865443

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.77  E-value=3.8e-18  Score=168.05  Aligned_cols=175  Identities=15%  Similarity=0.233  Sum_probs=123.0

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEE----------------CCEEccCC---CCEEEeecCCccceEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY----------------NGEPLQET---DEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~   73 (785)
                      +.+...|..+.+.+|++++|.|.+.+.+.+.|.|+|                ++......   .++.+..+.   ....+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~   78 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS---LTLST   78 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE---TTEEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC---CCEEE
Confidence            357778899999999999999999988889999998                22222111   344443321   12357


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCe----eEEEEeeEEEeCC--CCCCCcee-cCCCceEeccCCcEEEEEEEeccCCC--e
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREG----EAKMDIPVKVNTG--KPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSP--K  144 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~----~~~~~~~v~v~~~--~~~~p~i~-~~~~~~~~~~G~~v~l~C~~~g~p~~--~  144 (785)
                      |+|.+++.+|+|.|+|.+.+..+    .......|.|...  ...+|.+. ..+....+..|+.++|.|.+.|.|++  .
T Consensus        79 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~  158 (246)
T 4dzb_B           79 LTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  158 (246)
T ss_dssp             EEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceE
Confidence            99999999999999999987543    2223345666531  12345543 34445556779999999999886654  8


Q ss_pred             EEEeECCEEcccceEEE----------eCCE----EEEEEcccCCCC-cEEEEEEEEcCCe
Q psy2775         145 VEWYKDGKLIKDRQITS----------EKNT----HTLTLIQCSTKD-KGRYSVKVTNKEG  190 (785)
Q Consensus       145 v~W~~~g~~~~~~~~~~----------~~~~----~~L~i~~~~~~d-~G~Y~C~a~n~~g  190 (785)
                      ++|++||..+.......          .++.    ..|.|.....+| .|.|+|.|.|...
T Consensus       159 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          159 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             EEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCC
Confidence            99999999987543221          1222    348888888888 9999999998754

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.77  E-value=2.5e-18  Score=169.87  Aligned_cols=176  Identities=15%  Similarity=0.162  Sum_probs=124.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecC-----CCeeEEEECCE--Ec---c---------CCCCEEEeecCCccceE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVP-----EPDLLWYYNGE--PL---Q---------ETDEVVFSDQSDMHSYV   71 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~i~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~~   71 (785)
                      ..+.+...|..+.+.+|++++|.|.+.+.+     .+.|.|++++.  .+   .         ...++.+...+    ..
T Consensus        33 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~  108 (252)
T 3bkj_L           33 SDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSG----TD  108 (252)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TE
T ss_pred             cccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccC----CE
Confidence            356777789999999999999999998887     58999999641  11   0         12344333211    12


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEe
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWY  148 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~  148 (785)
                      .+|+|.+++.+|+|.|+|.|.+..+... ....|.|.. ...+|.+........+..|+.++|.|.+.|. |++ .|+|+
T Consensus       109 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  187 (252)
T 3bkj_L          109 FTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKR-ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK  187 (252)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECC-CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeC-CCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEE
Confidence            4699999999999999999998755322 224566642 2245666654433344579999999999884 443 79999


Q ss_pred             ECCEEcccc-eEE-----EeCC----EEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         149 KDGKLIKDR-QIT-----SEKN----THTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       149 ~~g~~~~~~-~~~-----~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      +||..+... ...     ..++    ...|.|.++..+|+|.|+|.|.|....
T Consensus       188 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          188 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             ETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             ECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            999987654 111     1111    246999999999999999999997654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.77  E-value=9.1e-19  Score=169.59  Aligned_cols=181  Identities=15%  Similarity=0.262  Sum_probs=124.6

Q ss_pred             CceEecCCCeEEEEEEEEecCC-----CeeEEEECCEEc-------------cCCCCEEEeecCCccceEEEEEEcccCC
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPE-----PDLLWYYNGEPL-------------QETDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~-----~~i~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      ..+.+.+|++++|.|.+.+.|.     +.+.|++++...             ....+..+..+ .......+|.|.+++.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPD-LLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTT-TGGGTBCCEEECSCCG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecc-cccCCeEEEEECCccc
Confidence            4678899999999999987754     689999987432             11222222211 1111124599999999


Q ss_pred             CCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeE-CCEEcccceE
Q psy2775          82 REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYK-DGKLIKDRQI  159 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~-~g~~~~~~~~  159 (785)
                      +|+|.|+|.+.+.. .....+.|.|.. .+..|.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+.....
T Consensus        82 ~D~G~Y~C~~~~~~-~~~~~~~l~V~~-~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~  158 (222)
T 4i0k_A           82 TDEGSYTCFVSIQD-FDSAAVSLQVAA-PYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT  158 (222)
T ss_dssp             GGCSCEEEEEEECC-CCCCCCCCCCCB-CCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE
T ss_pred             ccCEEEEEEEEeCC-CceEEEEEEEEc-CCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc
Confidence            99999999999753 334445555543 23345665543 3467789999999999 788999999999 5665544321


Q ss_pred             ---E-Ee-CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCC
Q psy2775         160 ---T-SE-KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE  204 (785)
Q Consensus       160 ---~-~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  204 (785)
                         . .. +.-..|.|.++..+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       159 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          159 TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence               1 11 122458899999999999999999999999999999997543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.77  E-value=2.6e-18  Score=141.26  Aligned_cols=95  Identities=17%  Similarity=0.320  Sum_probs=85.5

Q ss_pred             CCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC--CeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       555 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      ++.||.|...+.+..+.+|++++|.|.+.|.|.|.|+|+|||.++..+.  ++.+...++.++|.|.++.. +|+|.|+|
T Consensus         2 P~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C   80 (100)
T 3knb_A            2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK-QDGGLYTL   80 (100)
T ss_dssp             CCEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCG-GGCEEEEE
T ss_pred             CCCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCc-cCCEEEEE
Confidence            3557999999999999999999999999999999999999999997654  45566677788999999999 99999999


Q ss_pred             EEEcCCcceEEEEEEEEE
Q psy2775         633 VATNELGSATHGARVTVD  650 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~  650 (785)
                      .|+|..|..+.++.|.|+
T Consensus        81 ~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           81 SLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEEE
Confidence            999999999999999886

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.76  E-value=1.2e-17  Score=164.84  Aligned_cols=172  Identities=17%  Similarity=0.162  Sum_probs=119.3

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE-----Ec---------cCCCCEEEeecCCccceEEEEEEc
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-----PL---------QETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      ...+...|..+.+.+|++++|.|.+.+.|.+.+.|++++.     .+         ....++......    ...+|+|.
T Consensus         4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~   79 (250)
T 3esu_F            4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSG----TDYSLTIS   79 (250)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET----TEEEEEES
T ss_pred             ceeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCC----CEEEEEEc
Confidence            4567778899999999999999999999999999999531     11         112344332222    12469999


Q ss_pred             ccCCCCCeEEEEEEEcCCeeEE-EEeeEEEeCCC---------------CCCCceecCCCceEeccCCcEEEEEEEeccC
Q psy2775          78 SIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGK---------------PEKPSILEPLHDVSITEGESAVLSVQVGGEP  141 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~~~~-~~~~v~v~~~~---------------~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p  141 (785)
                      +++.+|+|.|.|.|.|..+... ....|.|....               ..++.+...+....+.+|+.+.|.|.+.+.+
T Consensus        80 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~  159 (250)
T 3esu_F           80 NLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYA  159 (250)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTT
T ss_pred             cCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCc
Confidence            9999999999999998765432 23345664310               0123333444667899999999999998766


Q ss_pred             --CCeEEEeEC--CEEccc------------------ce--EE--EeCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         142 --SPKVEWYKD--GKLIKD------------------RQ--IT--SEKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       142 --~~~v~W~~~--g~~~~~------------------~~--~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                        .+.+.|+|+  +..+..                  ..  ..  ......+|.|.+++.+|+|.|.|.|.+
T Consensus       160 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          160 FSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             GGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence              779999997  433211                  01  11  113456899999999999999999997

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=3.9e-18  Score=167.09  Aligned_cols=179  Identities=17%  Similarity=0.213  Sum_probs=118.5

Q ss_pred             cccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--CEEc---------------ccCCCEEEEE-eCcEEEEEEccCCCC
Q psy2775         419 SVPLQDVKVSRDEKASFEIELTKGDALVKWYKD--GKEI---------------AFSENVTLSI-DGKKQKLIIFSAGLE  480 (785)
Q Consensus       419 ~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--~~~~---------------~~~~~~~~~~-~~~~~~L~i~~~~~~  480 (785)
                      ...+..+.+.+|++++|.|....+.+.+.|+|+  +..+               ....++.+.. ......|+|.+++.+
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   83 (238)
T 2p1y_A            4 TQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPS   83 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGG
T ss_pred             eECccceEEeCCCEEEEEeecCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcc
Confidence            345567789999999999994337789999995  2111               1123455443 233568999999999


Q ss_pred             CcEEEEEEEeec-Ccc-----eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         481 DAGEYSCRVGDT-GDK-----ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       481 d~G~Y~C~a~n~-g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      |+|.|+|.|.|. |..     .....|.|...+.... + |..                                     
T Consensus        84 DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~-p-~~~-------------------------------------  124 (238)
T 2p1y_A           84 QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK-K-DAA-------------------------------------  124 (238)
T ss_dssp             GCEEEEEEEEC------CEEECCCEEEEEECCCHHHH-H-HHH-------------------------------------
T ss_pred             cCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCc-C-Ccc-------------------------------------
Confidence            999999999986 321     1235666665421000 0 000                                     


Q ss_pred             CCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCE-----Ee---------cCCCCeeEEe--eCCeEEEEE
Q psy2775         555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-----PL---------LSSPKKREIF--DGENIILEL  618 (785)
Q Consensus       555 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~-----~i---------~~~~~~~~~~--~~~~~~L~i  618 (785)
                       ...+.+...+....+.+|++++|.|.+.|.|.|.+.|+|++.     .+         ....++.+..  .+...+|+|
T Consensus       125 -~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  203 (238)
T 2p1y_A          125 -KKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHI  203 (238)
T ss_dssp             -HHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEE
T ss_pred             -cceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEE
Confidence             000134444456789999999999999999999999999641     11         1123333332  334678999


Q ss_pred             ccCCCCCCceeEEEEEEcCC
Q psy2775         619 KEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .+++. +|+|.|+|.|.|..
T Consensus       204 ~~v~~-~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          204 ADSQP-GDSATYFCAAIDTN  222 (238)
T ss_dssp             TTCCG-GGCEEEEEEEEETT
T ss_pred             cCCCH-HHCEEEEEEEeeCC
Confidence            99999 99999999999984

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.76  E-value=1.6e-18  Score=173.40  Aligned_cols=194  Identities=16%  Similarity=0.255  Sum_probs=123.1

Q ss_pred             CceecCCCceEeccCCcEEEEEEEe---ccCCCeEEEeECCEEcccc-------------------eEEE----eCCEEE
Q psy2775         114 PSILEPLHDVSITEGESAVLSVQVG---GEPSPKVEWYKDGKLIKDR-------------------QITS----EKNTHT  167 (785)
Q Consensus       114 p~i~~~~~~~~~~~G~~v~l~C~~~---g~p~~~v~W~~~g~~~~~~-------------------~~~~----~~~~~~  167 (785)
                      +.+...+..+.+.+|+.+.|.|.+.   +.+.+.|.|++++......                   ....    .....+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            4455566678899999999999997   6677789999965432111                   1111    122367


Q ss_pred             EEEcccCCCCcEEEEEEEEcCCeeE--EEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcc
Q psy2775         168 LTLIQCSTKDKGRYSVKVTNKEGTV--ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV  245 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  245 (785)
                      |.|.+++.+|+|.|+|.|.+..+..  ...+.|.|...                                     .+...
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-------------------------------------~p~~~  128 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-------------------------------------EPRDL  128 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-------------------------------------CCSEE
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-------------------------------------CCCcc
Confidence            9999999999999999999876543  34455555411                                     11245


Q ss_pred             eeCCCCeEEEEEEE---ccCCCCeEEEEEC-CEEcccc----------------------eEEE----eCCEEEEEEccC
Q psy2775         246 SITEGESAVLSVQV---GGEPSPKVEWYKD-GKLIKDR----------------------QITS----EKNTHTLTLIQC  295 (785)
Q Consensus       246 ~~~~G~~~~l~C~~---~g~p~~~v~W~~~-~~~l~~~----------------------~~~~----~~~~~~l~i~~~  295 (785)
                      .+.+|+.++|.|.+   .+.|.+.+.|+++ +..+...                      ....    ......|.|.++
T Consensus       129 ~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v  208 (268)
T 3mj6_A          129 RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTV  208 (268)
T ss_dssp             EEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             ccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcC
Confidence            67799999999999   6779999999994 3211100                      0111    123568999999


Q ss_pred             CCCCCeEEEEEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCccE
Q psy2775         296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA  344 (785)
Q Consensus       296 ~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~  344 (785)
                      ..+|+|.|+|.|.|..|.....+.|.|...++.+...+....+..|+.+
T Consensus       209 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~p~~~~~~~~q~~  257 (268)
T 3mj6_A          209 KESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGI  257 (268)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEECC-------------------
T ss_pred             ChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCeeeeCCCCCCCCcceec
Confidence            9999999999999999988888999997767777666666666665544

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.76  E-value=1.3e-17  Score=164.77  Aligned_cols=186  Identities=15%  Similarity=0.156  Sum_probs=121.9

Q ss_pred             cccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECC-----EE---------cccCCCEEEEEeCcEEEEEEccCCCCC
Q psy2775         417 EISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG-----KE---------IAFSENVTLSIDGKKQKLIIFSAGLED  481 (785)
Q Consensus       417 ~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~-----~~---------~~~~~~~~~~~~~~~~~L~i~~~~~~d  481 (785)
                      .+...+..+.+.+|++++|.|.+.+ +.+.+.|+|+.     ..         .....++.....+....|+|.+++.+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            3444566778899999999999997 67789999853     11         112356666666777899999999999


Q ss_pred             cEEEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCC
Q psy2775         482 AGEYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP  559 (785)
Q Consensus       482 ~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p  559 (785)
                      +|.|+|.|.|. +. ......|.|..++..-. ..+   ....                             ......++
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~-~~~---~~~~-----------------------------~~~~~~~~  132 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSG-GGG---SGGG-----------------------------GSGGGGSE  132 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC-------------------------------------------------------
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCccc-ccc---cccc-----------------------------cccCcccc
Confidence            99999999986 32 23445677765421000 000   0000                             00000113


Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCC--CCceEEEeC--CEEec-----------------CCCCeeEEee--CCeEEE
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPLL-----------------SSPKKREIFD--GENIIL  616 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~~i~-----------------~~~~~~~~~~--~~~~~L  616 (785)
                      .++..+....+.+|++++|.|.+.|.|  .+.+.|+|+  +..+.                 ...++.+..+  +...+|
T Consensus       133 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L  212 (250)
T 3esu_F          133 VQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYM  212 (250)
T ss_dssp             --CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             eEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEE
Confidence            344444567799999999999999987  779999997  43221                 0133433332  456689


Q ss_pred             EEccCCCCCCceeEEEEEEc
Q psy2775         617 ELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       617 ~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.+++. +|+|.|.|.|.|
T Consensus       213 ~I~~v~~-~DsG~Y~C~~~~  231 (250)
T 3esu_F          213 QLSSLTS-VDSAVYFCARSG  231 (250)
T ss_dssp             EECSCCG-GGCEEEEEEEEC
T ss_pred             EECCCCc-ccCEEEEEEEec
Confidence            9999999 999999999997

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=1.5e-17  Score=163.20  Aligned_cols=172  Identities=14%  Similarity=0.207  Sum_probs=123.1

Q ss_pred             ccccCCCeEEecCCcEEEEEEEeC-C----CceEEEEECC--EEc---c---------cCCCEEEEEeCcEEEEEEccCC
Q psy2775         418 ISVPLQDVKVSRDEKASFEIELTK-G----DALVKWYKDG--KEI---A---------FSENVTLSIDGKKQKLIIFSAG  478 (785)
Q Consensus       418 ~~~~~~~~~v~~g~~~~l~C~~~~-~----~~~i~W~~~~--~~~---~---------~~~~~~~~~~~~~~~L~i~~~~  478 (785)
                      +...+....+.+|++++|.|.+.+ +    .+.+.|+|++  ..+   .         ...++.+...+....|+|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            344556778999999999999988 4    5679999952  211   0         1346777666777899999999


Q ss_pred             CCCcEEEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         479 LEDAGEYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      .+|+|.|+|.|.|. +. ....+.|.|..++..                                              .
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~----------------------------------------------~  117 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSG----------------------------------------------G  117 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCC----------------------------------------------C
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCCC----------------------------------------------C
Confidence            99999999999996 43 345577887764310                                              0


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCC--CceEEEeC--CEEe------c-----------CCCCeeEEee--CCe
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRN--NKPL------L-----------SSPKKREIFD--GEN  613 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~--~~~i------~-----------~~~~~~~~~~--~~~  613 (785)
                      .++.++..+....+.+|++++|.|.+.|.|.  +.|.|+|+  +..+      .           ...++....+  ...
T Consensus       118 ~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  197 (240)
T 1moe_A          118 GGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNT  197 (240)
T ss_dssp             CCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTE
T ss_pred             CceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCE
Confidence            0122333445667899999999999999974  59999996  2221      0           1123333332  456


Q ss_pred             EEEEEccCCCCCCceeEEEEEEc
Q psy2775         614 IILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       614 ~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|+|.+++. +|+|.|+|.|.+
T Consensus       198 ~~L~I~~v~~-~D~G~Y~C~a~~  219 (240)
T 1moe_A          198 AYLQLTSLTS-EDTAVYYCAPFG  219 (240)
T ss_dssp             EEEEECSCCG-GGCEEEEEEECS
T ss_pred             EEEEECcCCH-HHCEEEEEEEEe
Confidence            7899999999 999999999995

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.76  E-value=3.1e-17  Score=158.48  Aligned_cols=177  Identities=11%  Similarity=0.142  Sum_probs=121.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--E---Ecc--------------CCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--E---PLQ--------------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .|..+.+.+|++|+|.|.+.+.+  .+.+.|||+.  .   .+.              ...|+.+..+...  ....|+|
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~sL~I   83 (223)
T 1dee_B            6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSK--NTLYLQM   83 (223)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTT--TEEEEEE
T ss_pred             cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCC--CEEEEEE
Confidence            45688999999999999998765  4789999853  1   110              1234444432211  2356999


Q ss_pred             cccCCCCCeEEEEEEEcCCe----e--EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEe
Q psy2775          77 KSIKKREEGVYTVVAKNREG----E--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWY  148 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~----~--~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~  148 (785)
                      .+++.+|+|.|.|.+.+..+    .  ....+.|.|....+.+|.+........+..|+.+.|.|.+.|. |.+ .|+|+
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  163 (223)
T 1dee_B           84 NSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWK  163 (223)
T ss_dssp             CSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeE
Confidence            99999999999999998752    1  1133467776434456666532222335789999999999886 766 99999


Q ss_pred             E-CCEEcccce---EEEeCC----EEEEEEcccCC--CCcEEEEEEEEcCCeeEEEEE
Q psy2775         149 K-DGKLIKDRQ---ITSEKN----THTLTLIQCST--KDKGRYSVKVTNKEGTVESAA  196 (785)
Q Consensus       149 ~-~g~~~~~~~---~~~~~~----~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~  196 (785)
                      + ||..+....   .....+    .+.|.|.....  +|.|.|+|.|.|..+......
T Consensus       164 ~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          164 YKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             ETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             ccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            9 998875410   000112    34688877776  889999999999988665443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.76  E-value=9.1e-18  Score=162.13  Aligned_cols=177  Identities=14%  Similarity=0.196  Sum_probs=123.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c---cC-------------CCCEEEeecCCccceEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L---QE-------------TDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~---~~-------------~~~~~~~~~~~~~~~~~~   73 (785)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|++++  ..   +   ..             ..++.+..+.  .....+
T Consensus         5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~   82 (220)
T 1pz5_B            5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD--SKSSVY   82 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG--GGTEEE
T ss_pred             eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC--CCCeEE
Confidence            346788999999999999998866  6889999853  11   1   00             2344443322  112346


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCeeE-E--EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEe
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREGEA-K--MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWY  148 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~~~-~--~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~  148 (785)
                      |+|.+++.+|+|.|.|.+.+..+.. .  ....|.|....+.+|.+........+.+|+.+.|.|.+.|. |.+ .|.|+
T Consensus        83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  162 (220)
T 1pz5_B           83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN  162 (220)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEG
T ss_pred             EEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEe
Confidence            9999999999999999999875321 2  34567776544456766544434456789999999999887 888 99999


Q ss_pred             ECCEEcc---cceEEEe---CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE
Q psy2775         149 KDGKLIK---DRQITSE---KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  196 (785)
Q Consensus       149 ~~g~~~~---~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  196 (785)
                      +++....   .......   .....|.|.+...+| |.|+|.|.|..|..+..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          163 YGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             GGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            9886421   0001111   124578999888877 999999999998766544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.76  E-value=5.7e-18  Score=164.11  Aligned_cols=182  Identities=13%  Similarity=0.171  Sum_probs=119.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c---c-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L---Q-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.+.+|++|+|.|.+.+.+  .+.+.|||++  ..   +   .           ...++.+..+..  .....|+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~   82 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTS--SSTAYMQ   82 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT--TTEEEEE
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCC--CCeEEEE
Confidence            456788999999999999998876  6789999864  21   1   0           023444433221  1235699


Q ss_pred             EcccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeECCE
Q psy2775          76 IKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGK  152 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~~g~  152 (785)
                      |.+++.+|+|.|.|.+.+..... .....|.|....+.+|.+........+..|+.++|.|.+.|. |.+ .|.|+++|.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           83 LSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            99999999999999999864322 223467776433445666543333356789999999999885 766 999999987


Q ss_pred             Ecccc---eEEEe---CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         153 LIKDR---QITSE---KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       153 ~~~~~---~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      .+...   .....   ...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            65311   11111   123578999988888 99999999987665555555443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=2.5e-17  Score=165.46  Aligned_cols=190  Identities=15%  Similarity=0.228  Sum_probs=128.5

Q ss_pred             CCCeEEecCCcEEEEEEEeCC---CceEEEEECC--EEc-----------------ccCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTKG---DALVKWYKDG--KEI-----------------AFSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +....+.+|++++|.|.+.+.   .+.+.|+|++  ..+                 ....++.+..+  +....|+|.++
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            346778999999999999874   4789999953  111                 01356666653  34678999999


Q ss_pred             CCCCcEEEEEEEeec-Cc-----ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccC
Q psy2775         478 GLEDAGEYSCRVGDT-GD-----KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCP  551 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~-----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  551 (785)
                      +.+|+|.|+|.|.|. |.     ....+.|.|..++.....  ...                                  
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~--~~~----------------------------------  156 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGG--GGS----------------------------------  156 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC----------------------------------------------
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCC--ccC----------------------------------
Confidence            999999999999997 41     113456777764310000  000                                  


Q ss_pred             CCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe--CCEEec------------CCCCeeEEeeCCeEEEE
Q psy2775         552 LGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL------------SSPKKREIFDGENIILE  617 (785)
Q Consensus       552 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~--~~~~i~------------~~~~~~~~~~~~~~~L~  617 (785)
                       .....++.+...+....+.+|++++|.|.+.|.| +.+.|+|  +|..+.            ...++.....+...+|+
T Consensus       157 -~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  234 (282)
T 1qok_A          157 -GGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLT  234 (282)
T ss_dssp             ------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             -CCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEE
Confidence             0000124555556677899999999999999999 9999999  555431            12445444456678899


Q ss_pred             EccCCCCCCceeEEEEEEcCCcceE-EEEEEEEE
Q psy2775         618 LKEADSETDAGDYKVVATNELGSAT-HGARVTVD  650 (785)
Q Consensus       618 i~~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  650 (785)
                      |.++.. +|+|.|+|.|.|..+... ....|.|.
T Consensus       235 I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          235 ISRMEA-EDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             ESSCCG-GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EccCCh-hHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            999999 999999999998654332 23556664

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.76  E-value=2.8e-17  Score=152.99  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=113.7

Q ss_pred             eEecCCCeEEEEEEEEecCCC--eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEE
Q psy2775          22 VYAEENSEVTLEVRLVAVPEP--DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK   99 (785)
Q Consensus        22 ~~v~~G~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~   99 (785)
                      +.|.+|++++|+|.+ +.|.+  .|+|++.+..+   .+....      .....|.|.+++.+|+|.|.|.|.|..+...
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~   86 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSD------TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ   86 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEE------SSEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEec------CCccEEEECccCcccCceEEEEEEeCCCceE
Confidence            799999999999999 88887  99999866444   222222      1225699999999999999999999998888


Q ss_pred             EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC----CeEEEeECCEEcccceE-E--E----------
Q psy2775         100 MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS----PKVEWYKDGKLIKDRQI-T--S----------  161 (785)
Q Consensus       100 ~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~----~~v~W~~~g~~~~~~~~-~--~----------  161 (785)
                      ..+.|.|+.    +|........ .+..|+.+ |+|.+.+. |.    ++|+|+|||.+|..... .  .          
T Consensus        87 ~~~~ltV~~----~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~  160 (210)
T 1gsm_A           87 HTVQLLVYA----FPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGD  160 (210)
T ss_dssp             EEEEEEEEB----CCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSC
T ss_pred             EEEEEEEEe----cCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCC
Confidence            888999983    4543321112 66778888 99999875 63    48999999999965432 1  1          


Q ss_pred             eCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         162 EKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       162 ~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ...    .++|.+...+.+|.+.|+|+|.+...
T Consensus       161 ~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          161 EDVLFRVTERWRLPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             CCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred             cceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence            011    23455557778888999999998763

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.76  E-value=2e-17  Score=165.73  Aligned_cols=184  Identities=15%  Similarity=0.166  Sum_probs=124.2

Q ss_pred             CcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCE-----Ecc---------cCCCEEEEEeCcEEEEEEccCCCC
Q psy2775         416 PEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGK-----EIA---------FSENVTLSIDGKKQKLIIFSAGLE  480 (785)
Q Consensus       416 ~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~-----~~~---------~~~~~~~~~~~~~~~L~i~~~~~~  480 (785)
                      +.+...+..+.+.+|++++|.|.+.+ +.+.+.|++++.     .+.         ...++.+..++....|+|.+++.+
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   92 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE   92 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence            34445566778899999999999987 577899998542     111         134667666677789999999999


Q ss_pred             CcEEEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCC
Q psy2775         481 DAGEYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA  558 (785)
Q Consensus       481 d~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  558 (785)
                      |+|.|+|.|.|. +. ....+.|.|..++......   ..                                   ....+
T Consensus        93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~---~~-----------------------------------~~~~p  134 (276)
T 3auv_A           93 DFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEG---RS-----------------------------------GGGGS  134 (276)
T ss_dssp             GCEEEEEEECSSSSCCCCCCEEEEC-------------------------------------------------------
T ss_pred             hCEEEEEEEecCCcccccCCEEEEEecCCCccccc---cc-----------------------------------cccCc
Confidence            999999999996 32 3334677776543100000   00                                   00001


Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCC--CCceEEEeCC--EEe-----------------cCCCCeeEEee--CCeEE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KPL-----------------LSSPKKREIFD--GENII  615 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~i-----------------~~~~~~~~~~~--~~~~~  615 (785)
                      +.++..+....+.+|++++|.|.+.|.|  .+.|.|+|++  ...                 ....++.+..+  ....+
T Consensus       135 ~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  214 (276)
T 3auv_A          135 EVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAY  214 (276)
T ss_dssp             CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred             ceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEE
Confidence            2333444577899999999999999987  4799999963  211                 01234444333  35568


Q ss_pred             EEEccCCCCCCceeEEEEEEcCC
Q psy2775         616 LELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       616 L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.|.+++. +|+|.|+|.|.|..
T Consensus       215 L~I~~v~~-~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          215 LQMNSLRA-EDTAVYYCARFVFF  236 (276)
T ss_dssp             EEECSCCG-GGCEEEEEEEECSS
T ss_pred             EEECCCCh-hHCEEEEEEEEcCc
Confidence            99999999 99999999999983

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.76  E-value=4.6e-18  Score=163.52  Aligned_cols=171  Identities=21%  Similarity=0.216  Sum_probs=118.1

Q ss_pred             cCCCeEEecCCcEEEEEEEeCC--------CceEEEEECCEEc------c-----------cCCCEEEEEe--CcEEEEE
Q psy2775         421 PLQDVKVSRDEKASFEIELTKG--------DALVKWYKDGKEI------A-----------FSENVTLSID--GKKQKLI  473 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~~--------~~~i~W~~~~~~~------~-----------~~~~~~~~~~--~~~~~L~  473 (785)
                      .+..+.+.+|++++|.|.+..+        .+.+.|+|++...      .           ...++.+..+  ....+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            3456788999999999999864        5679999986521      0           1234444322  1245799


Q ss_pred             EccCCCCCcEEEEEEEeecC-cc----eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775         474 IFSAGLEDAGEYSCRVGDTG-DK----ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP  548 (785)
Q Consensus       474 i~~~~~~d~G~Y~C~a~n~g-~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  548 (785)
                      |.+++.+|+|.|+|.+.|.. ..    ...+.|.|..++.                                        
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----------------------------------------  125 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE----------------------------------------  125 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCC----------------------------------------
Confidence            99999999999999999863 22    2357788876531                                        


Q ss_pred             ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC----CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCC
Q psy2775         549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE  624 (785)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~----P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~  624 (785)
                               +|.+..   ...+.+|+.++|.|.+.|.    |.|.++|+|++..+... +     ......|+|..+.. 
T Consensus       126 ---------~p~i~~---~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~-~-----~~~~~~L~i~~~~~-  186 (214)
T 2zg1_A          126 ---------KPDIHF---LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP-E-----TTRSSELTLTPRPE-  186 (214)
T ss_dssp             ---------CCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS-S-----CCCSSEEEECCCTT-
T ss_pred             ---------CCceec---CccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC-C-----ceeEEEEEEecccH-
Confidence                     133222   1136789999999999874    88999999998654321 1     13455799999988 


Q ss_pred             CCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         625 TDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|+|.|+|.|.|..|....+..+.+.
T Consensus       187 ~~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          187 DHGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             CCSCEEEEEEECC----CCEEEEECC
T ss_pred             HcCcEEEEEEEeCCCCcceEEEEEEE
Confidence            99999999999987665555555543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.76  E-value=1.7e-17  Score=159.96  Aligned_cols=174  Identities=13%  Similarity=0.176  Sum_probs=121.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--E---Ecc--------------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--E---PLQ--------------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~---~~~--------------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.+.+|++|+|.|.+.+.+  .+.+.||++.  .   .+.              ...|+.+..+..  ....+|+
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~   82 (220)
T 2fbj_H            5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNA--KNSLYLQ   82 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSS--SCEEEEE
T ss_pred             ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCC--CCEEEEE
Confidence            345679999999999999998765  5789999853  1   110              123454443311  1235699


Q ss_pred             EcccCCCCCeEEEEEEEcCCee---EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC--CeEEEeE
Q psy2775          76 IKSIKKREEGVYTVVAKNREGE---AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS--PKVEWYK  149 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~~---~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~--~~v~W~~  149 (785)
                      |.+++.+|+|.|.|.+.+..+.   ......|.|......+|.+.... ...+..|+.+.|.|.+.+. |.  +.|.|++
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           83 MSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             ECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            9999999999999999987543   12335677765444566665443 3446789999999999886 76  6999999


Q ss_pred             CCEEcccc---eEEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEE
Q psy2775         150 DGKLIKDR---QITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVE  193 (785)
Q Consensus       150 ~g~~~~~~---~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  193 (785)
                      +|..+...   .....++    .+.|.|.....+|+|.|+|.|.|..+...
T Consensus       162 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            98765211   1111122    23589999889999999999999987643

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.76  E-value=1.4e-18  Score=167.24  Aligned_cols=180  Identities=13%  Similarity=0.158  Sum_probs=117.3

Q ss_pred             CCCeeeecCCceE--ecCCCeEEEEEEEEec---CC-CeeEEEECCEEccCCCCEEEe-ecCCccceEEEEEEcccCCCC
Q psy2775          11 IPPTFSKKTKPVY--AEENSEVTLEVRLVAV---PE-PDLLWYYNGEPLQETDEVVFS-DQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        11 ~~p~~~~~~~~~~--v~~G~~v~l~C~~~g~---p~-~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      .+|.+...|....  +.+|++++|.|.+.|.   |. +.|.|++++..+......... ..++.....+.|+|.+++.+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            4556554444444  8999999999999887   33 789999999877543221111 122222344679999999999


Q ss_pred             CeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEEEeECCEEcccceE--
Q psy2775          84 EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQI--  159 (785)
Q Consensus        84 ~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W~~~g~~~~~~~~--  159 (785)
                      +|.|+|.|.|..+.......+........+|.+...+.......|+.+.|.|.+.| .|.+ .|+|++||..+.....  
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  167 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA  167 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecc
Confidence            99999999998663211112211112335676654333322345999999999998 5655 9999999998754321  


Q ss_pred             -E-EeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         160 -T-SEKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       160 -~-~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                       . ..++    ...|.|.....+|.|.|+|.|.|...
T Consensus       168 ~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          168 PVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             cEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence             1 1122    12455665555679999999999764

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.76  E-value=1.6e-18  Score=168.25  Aligned_cols=176  Identities=13%  Similarity=0.141  Sum_probs=122.2

Q ss_pred             CCee-eecCCceEecCCCeEEEEEEEEec-CC-C-eeEEEECCEEc-cCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTF-SKKTKPVYAEENSEVTLEVRLVAV-PE-P-DLLWYYNGEPL-QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~-~~~~~~~~v~~G~~v~l~C~~~g~-p~-~-~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +|.+ ...|..+.+.+|++++|.|.+.|. |. + .|.|+++|..+ ...........++.....+.|+|.+++.+|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            4444 567888889999999999999885 63 4 99999998877 333333223333444455789999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeCC--CCCCCceecC-CCceEeccCCcEEEEEEEecc-C-CCeEEEeECCEEcccceE--
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNTG--KPEKPSILEP-LHDVSITEGESAVLSVQVGGE-P-SPKVEWYKDGKLIKDRQI--  159 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~~--~~~~p~i~~~-~~~~~~~~G~~v~l~C~~~g~-p-~~~v~W~~~g~~~~~~~~--  159 (785)
                      |+|.|.|..+..  .+.+.|...  ...+|.+... +.... ..|..+.|.|.+.|+ | .+.|+|++||..+.....  
T Consensus        92 Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  168 (231)
T 2w59_A           92 FTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVT  168 (231)
T ss_dssp             EEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEE
T ss_pred             EEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCccccc
Confidence            999999987542  223334321  2245655432 22222 235679999999985 4 369999999999865431  


Q ss_pred             ---EE---------eC-C----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         160 ---TS---------EK-N----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       160 ---~~---------~~-~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                         ..         .+ +    .+.|.|.....+|.|.|+|.|.|...
T Consensus       169 ~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          169 TAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL  216 (231)
T ss_dssp             CCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence               11         12 2    24688888888899999999999864

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.76  E-value=1.6e-17  Score=162.80  Aligned_cols=180  Identities=15%  Similarity=0.145  Sum_probs=120.4

Q ss_pred             ccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECC--EE---cc---------cCCCEEEEEeCcEEEEEEccCCCCCc
Q psy2775         418 ISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG--KE---IA---------FSENVTLSIDGKKQKLIIFSAGLEDA  482 (785)
Q Consensus       418 ~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~L~i~~~~~~d~  482 (785)
                      +...+....+.+|++++|.|.+.+ +.+.+.|+|+.  ..   +.         ...++.+..++....|+|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            344556778999999999999987 57889999853  11   10         13466666666678999999999999


Q ss_pred             EEEEEEEeecCc--ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCe
Q psy2775         483 GEYSCRVGDTGD--KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL  560 (785)
Q Consensus       483 G~Y~C~a~n~g~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~  560 (785)
                      |.|.|.|.|.+.  ......|.|..++..-.    ....                                   ...++.
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~----~~~~-----------------------------------~~~~~~  124 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGG----GGSG-----------------------------------GGGSDI  124 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC------------------------------------------------------CC
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCc----cccc-----------------------------------ccccce
Confidence            999999999622  22346777776531000    0000                                   000122


Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCC--CCceEEEeCC--EEec----------------CCCCeeEEee--CCeEEEEE
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KPLL----------------SSPKKREIFD--GENIILEL  618 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~i~----------------~~~~~~~~~~--~~~~~L~i  618 (785)
                      ++..+....+.+|++++|.|.+.|.|  .+.+.|+|++  ..+.                ...++.+..+  +...+|+|
T Consensus       125 ~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I  204 (242)
T 2znx_A          125 QLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDL  204 (242)
T ss_dssp             EEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEE
T ss_pred             eeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEE
Confidence            33333345689999999999999986  4789999953  2220                1233333332  34578999


Q ss_pred             ccCCCCCCceeEEEEEEcC
Q psy2775         619 KEADSETDAGDYKVVATNE  637 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .+++. +|+|.|+|.|.|.
T Consensus       205 ~~v~~-~D~G~Y~C~a~~~  222 (242)
T 2znx_A          205 NSVTT-EDTATYYCANXDG  222 (242)
T ss_dssp             CSCCG-GGCEEEEEEETTS
T ss_pred             CCCCc-CcCEEEEEeccCC
Confidence            99999 9999999999984

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.76  E-value=4.1e-17  Score=161.60  Aligned_cols=191  Identities=14%  Similarity=0.183  Sum_probs=128.6

Q ss_pred             CCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EE---c--------------ccCCCEEEEEe--CcEEEEEEccCC
Q psy2775         423 QDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KE---I--------------AFSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      ....+.+|++++|.|.+.+ +  .+.+.|++..  ..   +              ....++.+..+  .....|+|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            3456889999999999987 3  5789999832  11   1              12245666554  346789999999


Q ss_pred             CCCcEEEEEEEeec-----CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         479 LEDAGEYSCRVGDT-----GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-----g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      .+|+|.|.|.|.|.     +.....+.|.|...+.....  ....                                  .
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~--~~~~----------------------------------~  133 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGG--GGSG----------------------------------G  133 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC------------------------------------------------
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccC--cccC----------------------------------C
Confidence            99999999999985     11233466777643100000  0000                                  0


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEEec------------CCCCeeEEeeCCeEEEEEc
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------SSPKKREIFDGENIILELK  619 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~i~------------~~~~~~~~~~~~~~~L~i~  619 (785)
                      ....+|.+...+....+.+|++++|.|.+.+.|.+.+.|||+  +..+.            ...++.....+..++|+|.
T Consensus       134 ~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  213 (256)
T 3umt_A          134 GGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTIS  213 (256)
T ss_dssp             ---CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEEC
T ss_pred             CCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEEC
Confidence            000125666666778899999999999999999999999994  22211            1234555556677889999


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEE-EEEEEEE
Q psy2775         620 EADSETDAGDYKVVATNELGSATH-GARVTVD  650 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~  650 (785)
                      +++. +|+|.|.|.|.|..+.... ...|.|.
T Consensus       214 ~v~~-~D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          214 SLES-EDFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             SCCG-GGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCCh-hHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            9999 9999999999997654433 2566665

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.75  E-value=8.5e-18  Score=161.01  Aligned_cols=173  Identities=14%  Similarity=0.163  Sum_probs=118.5

Q ss_pred             CCCeEEecCCcEEEEEEEeCC---CceEEEEEC--CEEcc----------------cCCCEEEEEe--CcEEEEEEccCC
Q psy2775         422 LQDVKVSRDEKASFEIELTKG---DALVKWYKD--GKEIA----------------FSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~--~~~~~----------------~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      +....+.+|++++|.|.+.+.   .+.+.|+|+  +....                ...++.+..+  +....|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            345578899999999999973   378999985  22211                2356666653  245789999999


Q ss_pred             CCCcEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCC
Q psy2775         479 LEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA  558 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~  558 (785)
                      .+|+|.|+|.|.|.........|.|...+.                                                .+
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~------------------------------------------------~~  118 (210)
T 3d9a_H           87 TEDTATYYCANWDGDYWGQGTLVTVSAAKT------------------------------------------------TP  118 (210)
T ss_dssp             GGGCEEEEEEETTSSCBCCCEEEEECCCCC------------------------------------------------BC
T ss_pred             cccCEEEEEEEecCcccccceEEEeccCCC------------------------------------------------CC
Confidence            999999999999852222345677654210                                                01


Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeC---CeEEEEEccCCCCCCceeEEEE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG---ENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      |.+........+.+|+.++|.|.+.|. |.| .|.|++++..+...........+   ....|.|.++.. +| |.|+|.
T Consensus       119 P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~-g~Y~C~  196 (210)
T 3d9a_H          119 PSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCN  196 (210)
T ss_dssp             CEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGT-TT-SCCEEE
T ss_pred             CEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHc-CC-CcEEEE
Confidence            333322223456789999999999997 888 99999998764211111111111   134699999887 67 999999


Q ss_pred             EEcCCcceEEE
Q psy2775         634 ATNELGSATHG  644 (785)
Q Consensus       634 a~n~~g~~~~~  644 (785)
                      |.|..|.....
T Consensus       197 a~n~~~~~~~~  207 (210)
T 3d9a_H          197 VAHPASSTKVD  207 (210)
T ss_dssp             EEEGGGTEEEE
T ss_pred             EEeCCCCcccc
Confidence            99999976543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.75  E-value=6.5e-19  Score=176.17  Aligned_cols=177  Identities=12%  Similarity=0.164  Sum_probs=110.8

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE---e---------cCCC----CeeEEe-eCCeEEEEEccCCCCCC
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---L---------LSSP----KKREIF-DGENIILELKEADSETD  626 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~---i---------~~~~----~~~~~~-~~~~~~L~i~~~~~~~d  626 (785)
                      ..+.+.+|++++|.|.+.+ |.+.|.|||..  ..   +         ....    ++.... ....++|+|.+++. +|
T Consensus        35 ~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~D  112 (270)
T 3qib_D           35 RYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEA-GD  112 (270)
T ss_dssp             SEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCG-GG
T ss_pred             CeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCH-hH
Confidence            3567899999999999876 77899999822  11   0         0000    222221 23467899999999 99


Q ss_pred             ceeEEEEEEcCCc----ceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCC
Q psy2775         627 AGDYKVVATNELG----SATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPP  702 (785)
Q Consensus       627 ~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~  702 (785)
                      +|.|.|.|.|..+    .....+.|.|...                                   +....+|.+....+.
T Consensus       113 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~~~~P~v~~~~~~  157 (270)
T 3qib_D          113 SALYLCASSLNWSQDTQYFGPGTRLLVLED-----------------------------------LKNVFPPEVAVFEPS  157 (270)
T ss_dssp             CEEEEEEEESCTTCCCCEECCCEEEEEESC-----------------------------------STTCBCCEEEEEECC
T ss_pred             CeEEEEEEecCCCccceEECCcEEEEEccc-----------------------------------cccccCCceEEECCC
Confidence            9999999997432    2223345555410                                   001124444322223


Q ss_pred             cEEeecCCeEEEEEEEec-CCCC-ceEEeECCEEeeecccccc----------c--hhhhcccccceeeeee-ceEEEEE
Q psy2775         703 EVLVKKGEDLKIEVRFKA-LPPP-KAEWTVNGTVIVPSKRVKG----------K--AEFIKKLDDLEVKERE-NAVLEVE  767 (785)
Q Consensus       703 ~~~~~~g~~~~l~C~~~g-~P~p-~i~W~~~~~~~~~~~~~~~----------~--~~~~~~l~~~~v~~~~-~~~~~c~  767 (785)
                      ...+..|+.++|.|.+.| .|.| .|.|++||..+..+.+...          .  ......|.+......| .|.|+|.
T Consensus       158 ~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~  237 (270)
T 3qib_D          158 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQ  237 (270)
T ss_dssp             HHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEE
T ss_pred             ccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEE
Confidence            333556999999999999 6777 8999999999977543321          0  1111234444444445 8999999


Q ss_pred             Eeccc--ceeEEee
Q psy2775         768 VTSDK--ADVKWFK  779 (785)
Q Consensus       768 ~~~~~--~~~~w~~  779 (785)
                      |.++.  -+..|..
T Consensus       238 v~~~~l~~~~~~~~  251 (270)
T 3qib_D          238 VQFYGLSENDEWTQ  251 (270)
T ss_dssp             EEECCBCTTSCCCS
T ss_pred             EEecCCCCcccccc
Confidence            98743  2346654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.75  E-value=5.5e-18  Score=167.47  Aligned_cols=175  Identities=15%  Similarity=0.174  Sum_probs=121.5

Q ss_pred             cccccCCCeEEecCCcEEEEEEEeCC------CceEEEEECC--EEc------------ccCCCEEEEEeCcEEEEEEcc
Q psy2775         417 EISVPLQDVKVSRDEKASFEIELTKG------DALVKWYKDG--KEI------------AFSENVTLSIDGKKQKLIIFS  476 (785)
Q Consensus       417 ~~~~~~~~~~v~~g~~~~l~C~~~~~------~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~  476 (785)
                      .+..++..+.+.+|++++|.|.+.+.      .+.+.|+|++  ..+            ....++.+...+....|+|.+
T Consensus        36 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~  115 (252)
T 3bkj_L           36 LMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISR  115 (252)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             EEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECC
Confidence            34444567788999999999999874      3789999954  111            113466666667778999999


Q ss_pred             CCCCCcEEEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         477 AGLEDAGEYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      ++.+|+|.|+|.|.|. +. ......|.|.....                                              
T Consensus       116 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~----------------------------------------------  149 (252)
T 3bkj_L          116 VEAEDLGVYYCFQASLVPLTFGAGTKLELKRADA----------------------------------------------  149 (252)
T ss_dssp             CCGGGCEEEEEEECSBSSCEECCCEEEEECCCCB----------------------------------------------
T ss_pred             CCcccCEEEEEEEEcCCccEECCCEEEEEeCCCc----------------------------------------------
Confidence            9999999999999986 32 12335677754210                                              


Q ss_pred             CCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCC-CC-eeEEe-eCC----eEEEEEccCCCCC
Q psy2775         555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS-PK-KREIF-DGE----NIILELKEADSET  625 (785)
Q Consensus       555 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~-~~-~~~~~-~~~----~~~L~i~~~~~~~  625 (785)
                         +|.+........+.+|+.++|.|.+.|. |++ .|+|+|+|..+..+ .. ..... .++    .+.|.|.++.. +
T Consensus       150 ---~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~  225 (252)
T 3bkj_L          150 ---APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-E  225 (252)
T ss_dssp             ---CCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-H
T ss_pred             ---CcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhc-c
Confidence               1333332223334579999999999985 554 79999999988654 11 00111 111    24699999988 8


Q ss_pred             CceeEEEEEEcCCcce
Q psy2775         626 DAGDYKVVATNELGSA  641 (785)
Q Consensus       626 d~G~Y~C~a~n~~g~~  641 (785)
                      |+|.|+|.|.|.....
T Consensus       226 d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          226 RHNSYTCEATHKTSTS  241 (252)
T ss_dssp             HCCEEEEEEECTTCSS
T ss_pred             CCCeEEEEEEeCCCCC
Confidence            9999999999987654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.75  E-value=1.3e-17  Score=163.49  Aligned_cols=172  Identities=16%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E---Ecc---------CCCCEEEeecCCccceEEEEEEcc
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E---PLQ---------ETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~---~~~---------~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      +.|...|..+.+.+|++++|.|.+.+.|.+.+.|++++  .   .+.         ...++.+...+    ...+|+|.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~   77 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG----TDFTLSINS   77 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESS
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCC----CEEEEEECC
Confidence            45778899999999999999999998888999999953  1   111         12344433211    125699999


Q ss_pred             cCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCC---------CCCceecCCCceEeccCCcEEEEEEEeccC--CCeEE
Q psy2775          79 IKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKP---------EKPSILEPLHDVSITEGESAVLSVQVGGEP--SPKVE  146 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~---------~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p--~~~v~  146 (785)
                      ++.+|+|.|.|.+.|..+.. .....|.|...+.         .++.+...+....+.+|++++|.|.+.+.|  .+.+.
T Consensus        78 v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~  157 (242)
T 2znx_A           78 VETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXS  157 (242)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEE
T ss_pred             CChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCccee
Confidence            99999999999999875432 2234566653111         112222333345689999999999998865  47899


Q ss_pred             EeEC--CEEcc-----------------cceEEE----eCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775         147 WYKD--GKLIK-----------------DRQITS----EKNTHTLTLIQCSTKDKGRYSVKVTNK  188 (785)
Q Consensus       147 W~~~--g~~~~-----------------~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~  188 (785)
                      |+|+  +..+.                 ...+..    .....+|.|.+++.+|+|.|.|.|.|.
T Consensus       158 W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          158 XIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            9994  32220                 111111    134568999999999999999999874

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.75  E-value=1.6e-17  Score=160.69  Aligned_cols=174  Identities=13%  Similarity=0.163  Sum_probs=120.8

Q ss_pred             CCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EE---c----------------ccCCCEEEEEe--CcEEEEEEcc
Q psy2775         423 QDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KE---I----------------AFSENVTLSID--GKKQKLIIFS  476 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~---~----------------~~~~~~~~~~~--~~~~~L~i~~  476 (785)
                      ....+.+|++++|.|.+.+ +  .+.+.|+++.  ..   +                ....++.+..+  .....|+|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            3557889999999999997 3  5689999852  21   1                01246666654  3467899999


Q ss_pred             CCCCCcEEEEEEEeec-C-----cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccccc
Q psy2775         477 AGLEDAGEYSCRVGDT-G-----DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTC  550 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~-g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~  550 (785)
                      ++.+|+|.|.|.|.|. +     .....+.|.|...+.                                          
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------  125 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKT------------------------------------------  125 (222)
T ss_dssp             CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCC------------------------------------------
T ss_pred             CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCC------------------------------------------
Confidence            9999999999999986 3     222446777765210                                          


Q ss_pred             CCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCC----eEEEEEccCCCC
Q psy2775         551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSE  624 (785)
Q Consensus       551 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~----~~~L~i~~~~~~  624 (785)
                            .+|.+........+.+|+.++|.|.+.|. |.| .|.|+++|..+... .......++    .+.|.|.++.. 
T Consensus       126 ------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~-  197 (222)
T 1q9r_B          126 ------TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTW-  197 (222)
T ss_dssp             ------BCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTT-
T ss_pred             ------CCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceE-eccccccCCcEEEEEEEEECchhc-
Confidence                  01333332222346689999999999996 988 99999999865321 111111222    24689999888 


Q ss_pred             CCceeEEEEEEcCCcceEEEEEE
Q psy2775         625 TDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      +| |.|+|.|.|..|.......|
T Consensus       198 ~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          198 PS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             TT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CC-CeEEEEEEccCCCCcEEEec
Confidence            88 99999999999987655544

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.75  E-value=2.8e-18  Score=169.03  Aligned_cols=177  Identities=14%  Similarity=0.112  Sum_probs=118.6

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe----------------CCEEecCC---CCeeEEe-eCCeEEEEEc
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR----------------NNKPLLSS---PKKREIF-DGENIILELK  619 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~----------------~~~~i~~~---~~~~~~~-~~~~~~L~i~  619 (785)
                      .+...+....+.+|++++|.|.+.|.|.+.|.|||                ++......   .++.+.. ....++|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            34555667889999999999999999999999999                33333222   3333333 3457789999


Q ss_pred             cCCCCCCceeEEEEEEcCCcc----eEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCC
Q psy2775         620 EADSETDAGDYKVVATNELGS----ATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPV  695 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~  695 (785)
                      +++. +|+|.|.|.|.|..+.    ....+.|.|...                                   .....+|.
T Consensus        83 ~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~~~~P~  126 (246)
T 4dzb_B           83 SAHP-EDSSFYICSARTSGDFGEQFFGPGTRLTVLED-----------------------------------LKNVFPPE  126 (246)
T ss_dssp             SCCG-GGCEEEEEEECCSSGGGCCEECCCEEEEEESC-----------------------------------GGGCBCCE
T ss_pred             CCCH-HHCEEEEEEEecCCCCcceEEcCCEEEEEecC-----------------------------------CCcccCCc
Confidence            9999 9999999999987542    223345555410                                   00113454


Q ss_pred             cCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECCEEeeeccccccch------------hhhcccccceeeeee-
Q psy2775         696 IDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNGTVIVPSKRVKGKA------------EFIKKLDDLEVKERE-  760 (785)
Q Consensus       696 i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~~~~~~~~~~------------~~~~~l~~~~v~~~~-  760 (785)
                      +....+....+..|+.++|.|.+.|.|+|  .|.|++||..+..+.+.....            .....|.+......| 
T Consensus       127 i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~  206 (246)
T 4dzb_B          127 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNP  206 (246)
T ss_dssp             EEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCT
T ss_pred             eEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccC
Confidence            43323333446679999999999997665  899999999997754432210            111234444444455 


Q ss_pred             ceEEEEEEeccc
Q psy2775         761 NAVLEVEVTSDK  772 (785)
Q Consensus       761 ~~~~~c~~~~~~  772 (785)
                      .|.|+|.|.++.
T Consensus       207 ~g~YtC~v~~~~  218 (246)
T 4dzb_B          207 RNHFRCQVQFYG  218 (246)
T ss_dssp             TCEEEEEEEECC
T ss_pred             CCeEEEEEEecC
Confidence            899999998643

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.75  E-value=5.6e-18  Score=161.10  Aligned_cols=168  Identities=15%  Similarity=0.285  Sum_probs=116.2

Q ss_pred             ceEecCCCeEEEEEEEE----ecCCCeeEEEECCEEccC------------CCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          21 PVYAEENSEVTLEVRLV----AVPEPDLLWYYNGEPLQE------------TDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~----g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      .+.+.+|++++|.|.+.    +.|.+.+.|++++..+..            ..+..+...++     .+|+|.+++.+|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~-----~~L~I~~v~~~D~   77 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN-----LSIVILALRPSDE   77 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT-----TEEEECSCCGGGC
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCC-----cEEEEecccchhC
Confidence            57899999999999985    346688999999987621            12333321111     3599999999999


Q ss_pred             eEEEEEEEcCCeeE-----EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEe-ccCCCeEEEeECCEEcccce
Q psy2775          85 GVYTVVAKNREGEA-----KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLIKDRQ  158 (785)
Q Consensus        85 G~Y~C~a~~~~~~~-----~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~-g~p~~~v~W~~~g~~~~~~~  158 (785)
                      |.|+|.|.|..+..     ...+.|.|... +..|.+...    ....|+.+.|.|.+. |.|.|.|+|++||..+....
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~-~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~  152 (201)
T 1dr9_A           78 GTYECVVLKYEKDAFKREHLAEVTLSVKAD-FPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN  152 (201)
T ss_dssp             EEEEEEEEECCTTSCEEEEEEEEEEEEECC-CCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE
T ss_pred             eEEEEEEEcCCCCccccccccEEEEEEcCC-CCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECcccc
Confidence            99999999965432     34566777542 223444321    124588999999994 89999999999999887442


Q ss_pred             --EEEeC--CEEEE-EEcccCCCCcEEEEEEEEcCCeeEEEEEEE
Q psy2775         159 --ITSEK--NTHTL-TLIQCSTKDKGRYSVKVTNKEGTVESAANL  198 (785)
Q Consensus       159 --~~~~~--~~~~L-~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  198 (785)
                        .....  +...+ .+..+..+|.|.|+|.|.|..|..+..+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          153 TTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             ceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence              11221  21122 234556789999999999999887765543

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.74  E-value=2.1e-17  Score=162.73  Aligned_cols=172  Identities=13%  Similarity=0.148  Sum_probs=117.7

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecC-----CCeeEEEECC--EE---cc---------CCCCEEEeecCCccceEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVP-----EPDLLWYYNG--EP---LQ---------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~   73 (785)
                      ..+...|..+.+.+|++++|.|.+.+.+     .+.+.|++++  ..   +.         ...++.+...+    ...+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~   77 (247)
T 1svz_A            2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG----TDFT   77 (247)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET----TEEE
T ss_pred             CcEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCC----CEEE
Confidence            3567788999999999999999998887     6899999853  11   11         12344433211    1256


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCC---------CCCceecCCCceEeccCCcEEEEEEEeccC--
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKP---------EKPSILEPLHDVSITEGESAVLSVQVGGEP--  141 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~---------~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p--  141 (785)
                      |+|.+++.+|+|.|.|.+.|..+.. .....|.|.....         .++.+...+....+.+|+.++|.|.+.+.+  
T Consensus        78 L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  157 (247)
T 1svz_A           78 LKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFT  157 (247)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGG
T ss_pred             EEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccC
Confidence            9999999999999999999875532 2234566653211         122233333445689999999999998864  


Q ss_pred             CCeEEEeECC--EEcc------------------cceEE--E--eCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775         142 SPKVEWYKDG--KLIK------------------DRQIT--S--EKNTHTLTLIQCSTKDKGRYSVKVTNK  188 (785)
Q Consensus       142 ~~~v~W~~~g--~~~~------------------~~~~~--~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~  188 (785)
                      .+.+.|+|++  ..+.                  ...+.  .  .....+|+|.+++.+|+|.|.|.|.|.
T Consensus       158 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          158 DYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             GSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            5699999953  2110                  11111  1  234578999999999999999999985

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.74  E-value=4.6e-17  Score=160.32  Aligned_cols=179  Identities=16%  Similarity=0.197  Sum_probs=119.3

Q ss_pred             cccCCCeEEecCCcEEEEEEEeC-C-----CceEEEEECC--EE---cc---------cCCCEEEEEeCcEEEEEEccCC
Q psy2775         419 SVPLQDVKVSRDEKASFEIELTK-G-----DALVKWYKDG--KE---IA---------FSENVTLSIDGKKQKLIIFSAG  478 (785)
Q Consensus       419 ~~~~~~~~v~~g~~~~l~C~~~~-~-----~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~L~i~~~~  478 (785)
                      ...+..+.+.+|++++|.|.+.+ +     .+.+.|+|+.  ..   +.         ...++.+..++....|+|.+++
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   84 (247)
T 1svz_A            5 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   84 (247)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             EecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCC
Confidence            34556778999999999999987 4     4789999842  21   11         1356666666677899999999


Q ss_pred             CCCcEEEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775         479 LEDAGEYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG  556 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~  556 (785)
                      .+|+|.|+|.|.|. +. ....+.|.|..++......  .                                     ...
T Consensus        85 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~--~-------------------------------------~~~  125 (247)
T 1svz_A           85 AEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGG--S-------------------------------------GGG  125 (247)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC----------------------------------------------------
T ss_pred             HHHCEEEEEEEccCCccEECCCEEEEEECCccccccc--c-------------------------------------ccc
Confidence            99999999999986 32 2334677776542100000  0                                     000


Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCC--CCceEEEeCC--EEe------c-----------CCCCeeEEe--eCCe
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KPL------L-----------SSPKKREIF--DGEN  613 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~i------~-----------~~~~~~~~~--~~~~  613 (785)
                      .++.++.......+.+|++++|.|.+.|.|  .+.+.|+|++  ..+      .           ...++....  .+..
T Consensus       126 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  205 (247)
T 1svz_A          126 GSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTST  205 (247)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTE
T ss_pred             cCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCE
Confidence            012222233344689999999999999985  5699999963  211      0           023333333  3456


Q ss_pred             EEEEEccCCCCCCceeEEEEEEcC
Q psy2775         614 IILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       614 ~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ++|+|.+++. +|+|.|.|.|.|.
T Consensus       206 ~~L~I~~v~~-~DsG~Y~C~a~n~  228 (247)
T 1svz_A          206 AFLQINNLKN-EDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEECSCCG-GGCEEEEEEEEEG
T ss_pred             EEEEECCCCh-hHCEEEEEEEecc
Confidence            7899999999 9999999999995

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.74  E-value=7.6e-18  Score=155.57  Aligned_cols=157  Identities=17%  Similarity=0.292  Sum_probs=114.4

Q ss_pred             CCceEecCCCeEEEEEEEE--ecCCCeeEEEE--CCEEc----------cCCCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          19 TKPVYAEENSEVTLEVRLV--AVPEPDLLWYY--NGEPL----------QETDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~--g~p~~~i~W~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      ...+...+|++|+|.|...  +.+.+.|.|++  ++..|          ....++.+..++       +|+|.+++.+|+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng-------sL~I~~v~~~Ds   78 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG-------TLKIKHLKTDDQ   78 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS-------CEEECSCCGGGC
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC-------CEEECCCChhhC
Confidence            4568889999999999542  23467899999  88766          234555554322       399999999999


Q ss_pred             eEEEEEEEcCCeeEE--EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEe
Q psy2775          85 GVYTVVAKNREGEAK--MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE  162 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~--~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~  162 (785)
                      |.|+|.|.|..|...  ..+.|.|... ...|.+..        .+..+.|.|.+.+.|.+.|.|++||..+ ..    .
T Consensus        79 G~Y~c~~~n~~g~~~~~~~~~L~V~~~-~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~----~  144 (182)
T 1hnf_A           79 DIYKVSIYDTKGKNVLEKIFDLKIQER-VSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL----S  144 (182)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEECC-CCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE----E
T ss_pred             EEEEEEEEeCCCceeEEEEEEEEEcCc-CCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC----C
Confidence            999999999877653  4566777642 23344433        2347999999998888999999999887 11    1


Q ss_pred             CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775         163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  199 (785)
Q Consensus       163 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  199 (785)
                      .  ..|.+.. ..+|+|.|+|.|.|..+..++...+.
T Consensus       145 ~--~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          145 Q--RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             S--SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             C--cEEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            1  1233332 47899999999999999887766553

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.74  E-value=1.5e-17  Score=161.44  Aligned_cols=175  Identities=14%  Similarity=0.218  Sum_probs=117.8

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC----CeeEEEECC--EEc---c-------------CCCCEEEeecCCccceEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYNG--EPL---Q-------------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .|..+.+.+|++++|.|.+.+.+.    +.+.|++++  ..+   .             ...|+.+..+...  ....|+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~~L~   83 (228)
T 3bae_H            6 ESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSR--DMVFMK   83 (228)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTT--TEEEEE
T ss_pred             CCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCC--CeEEEE
Confidence            467789999999999999988764    789999853  211   0             0124443332211  225699


Q ss_pred             EcccCCCCCeEEEEEEEcCCe------e---EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-e
Q psy2775          76 IKSIKKREEGVYTVVAKNREG------E---AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-K  144 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~------~---~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~  144 (785)
                      |.+++.+|+|.|.|.+.+..+      .   ......|.|....+.+|.+........+..|+.+.|.|.+.|. |.+ .
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~  163 (228)
T 3bae_H           84 ITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  163 (228)
T ss_dssp             ECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCE
T ss_pred             EcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEE
Confidence            999999999999999998653      1   1123567776444456766543333446789999999999886 777 9


Q ss_pred             EEEeECCEEcccc---eEEEeC---CEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE
Q psy2775         145 VEWYKDGKLIKDR---QITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA  195 (785)
Q Consensus       145 v~W~~~g~~~~~~---~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  195 (785)
                      |.|+++|..+...   .....+   ....|.|.....+| |.|+|.|.|..+.....
T Consensus       164 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          164 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             EEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            9999998764211   111111   13468898888866 99999999998765443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.74  E-value=1.6e-17  Score=160.84  Aligned_cols=172  Identities=14%  Similarity=0.196  Sum_probs=118.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEcc-----------------CCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPLQ-----------------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .|..+.+.+|++++|.|.+.+.+  .+.+.||+++  ..+.                 ...++.+..+..  ....+|+|
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I   83 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDL--EDFVYLQM   83 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETT--TTEEEEEE
T ss_pred             cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCC--CCEEEEEE
Confidence            45678999999999999998876  6789999853  2110                 123444443221  12356999


Q ss_pred             cccCCCCCeEEEEEEEcCCe-----e---EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEE
Q psy2775          77 KSIKKREEGVYTVVAKNREG-----E---AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVE  146 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~-----~---~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~  146 (785)
                      .+++.+|+|.|.|.+.+..+     .   ......|.|....+.+|.+........+..|+.+.|.|.+.|. |.+ .|.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  163 (225)
T 1op3_H           84 HKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  163 (225)
T ss_dssp             CSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEE
T ss_pred             CCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEE
Confidence            99999999999999998764     2   1134567776544445665432222235689999999999886 766 999


Q ss_pred             EeECCEEcccc---eEEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeE
Q psy2775         147 WYKDGKLIKDR---QITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTV  192 (785)
Q Consensus       147 W~~~g~~~~~~---~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  192 (785)
                      |+++|..+...   .....++    ...|.|.+...+| |.|+|.|.|..+..
T Consensus       164 W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          164 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             CCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             EecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            99998764211   1111112    3468999988888 99999999977543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.74  E-value=1.2e-18  Score=165.45  Aligned_cols=155  Identities=17%  Similarity=0.258  Sum_probs=105.6

Q ss_pred             ecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775          24 AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP  103 (785)
Q Consensus        24 v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~  103 (785)
                      +.+|++++|.|.+   |.+.|.|+|++..+...      ...+     .+|.|.+++.+|+|.|+|.+.+... .  .+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~------~~~~-----~~L~i~~v~~~DsG~Y~C~~~~~~s-~--~~~   77 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL------TEDK-----KKWNLGSNAKDPRGMYQCKGSQNKS-K--PLQ   77 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE------ESSC-----CCEEEEEGGGCCEEEEEEESSSSCC-C--CEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC------CCCC-----CeEEeCCCCcCCCEEEEEEecCCCC-e--eEE
Confidence            3689999999997   77899999999877532      0111     3499999999999999999765332 1  233


Q ss_pred             EEEeC---------------------------CCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEccc
Q psy2775         104 VKVNT---------------------------GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD  156 (785)
Q Consensus       104 v~v~~---------------------------~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~  156 (785)
                      |.+..                           ....++.+...+ .....+|+.+.|.|.  |.|.+.+.|+++|..+..
T Consensus        78 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A           78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             EEEEC------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             EEEEEeccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence            33330                           000122232222 222338999999998  788899999999998754


Q ss_pred             c----eEEEeCCEEEEEEccc-CCCCcEEEEEEEEcCCeeE-EEEEEEEe
Q psy2775         157 R----QITSEKNTHTLTLIQC-STKDKGRYSVKVTNKEGTV-ESAANLNV  200 (785)
Q Consensus       157 ~----~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  200 (785)
                      .    .+...  ..+|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.+
T Consensus       155 ~~~~~~~~~~--~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          155 DEDDKNIGSD--EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             CTTCTTEEEE--TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ccCCceEecC--CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            2    12212  347999999 9999999999999999852 33444443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.74  E-value=6.8e-17  Score=156.99  Aligned_cols=183  Identities=13%  Similarity=0.151  Sum_probs=119.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c---c----------CCCCEEEeecCCccceEEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L---Q----------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~---~----------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.||++.  ..   +   .          ...|+.+..+...  ....|+|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~~L~I   82 (232)
T 1dn0_B            5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSK--NQFSLKL   82 (232)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTT--TEEEEEE
T ss_pred             ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCC--CEEEEEE
Confidence            346678999999999999998765  5789999853  11   1   0          1234444432211  2356999


Q ss_pred             cccCCCCCeEEEEEEE--cCCe----eEEEEeeEEEeCCCCCCCceecCCCceEeccC-CcEEEEEEEecc-CCC-eEEE
Q psy2775          77 KSIKKREEGVYTVVAK--NREG----EAKMDIPVKVNTGKPEKPSILEPLHDVSITEG-ESAVLSVQVGGE-PSP-KVEW  147 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~--~~~~----~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G-~~v~l~C~~~g~-p~~-~v~W  147 (785)
                      .+++.+|+|.|.|.+.  +..+    .......|.|....+.+|.+........+..| +.++|.|.+.|. |.+ .|.|
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W  162 (232)
T 1dn0_B           83 SSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSW  162 (232)
T ss_dssp             CSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred             CCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            9999999999999998  3211    12233567776534455666532222234578 999999999875 766 9999


Q ss_pred             eE-CCEEcccce---EEEeCC----EEEEEEcccCC--CCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         148 YK-DGKLIKDRQ---ITSEKN----THTLTLIQCST--KDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       148 ~~-~g~~~~~~~---~~~~~~----~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      ++ ||..+....   .....+    .+.|.|.....  +|.|.|+|.|.|..+.......+.|.
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            99 998875410   000112    34688888877  88999999999999877666665554

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.74  E-value=2.3e-15  Score=172.89  Aligned_cols=334  Identities=13%  Similarity=0.142  Sum_probs=199.1

Q ss_pred             CCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEccc-CCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCC
Q psy2775         128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC-STKDKGRYSVKVTNKEGTVESAANLNVDPYEPK  206 (785)
Q Consensus       128 G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  206 (785)
                      +..+.|.|.+.|.|.+.+.|.++|..+....      ...+.|..+ ..+.++.|+|.+.+..|..... .+.+....  
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~--  161 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWN------RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHP--  161 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCE------EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSC--
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCcee------EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeecc--
Confidence            4589999999999999999999998764321      234666654 2334588999888877765432 12222111  


Q ss_pred             CCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEE-EE--ECCEEcccceEEE
Q psy2775         207 ESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE-WY--KDGKLIKDRQITS  283 (785)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~-W~--~~~~~l~~~~~~~  283 (785)
                                               .+.+|.+. .+....+.+|+.+.|.|.+.|.|.+.+. |+  ++|..+.......
T Consensus       162 -------------------------~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~  215 (731)
T 2v5y_A          162 -------------------------CTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV  215 (731)
T ss_dssp             -------------------------CSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEE
T ss_pred             -------------------------cccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEE
Confidence                                     12446666 4457888999999999999999999887 87  6777665322211


Q ss_pred             -e--CCEEEEEEccCCCCCCeEEEEEEEeCCCc-eEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC---CCC-
Q psy2775         284 -E--KNTHTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS---DKA-  355 (785)
Q Consensus       284 -~--~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~---~~~-  355 (785)
                       .  .....|.|.++...|.|.|+|.|.|..|. ....+.|.|...| .+...+... ......+.|.|....   ..+ 
T Consensus       216 ~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P-~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i  293 (731)
T 2v5y_A          216 TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPP-VPIAPPQLA-SVGATYLWIQLNANSINGDGPI  293 (731)
T ss_dssp             CCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCC-CBSSCCEEE-EECSSCEEEECCCSSBSSCSCC
T ss_pred             eccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCC-CCCCCccee-ccCCceEEEEeCCcccCCCCcc
Confidence             1  12468999999999999999999999987 5555778887543 222222222 234467788886532   122 


Q ss_pred             ---eEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEe--ccceEEE----EEEEecCCcccccCCCeE
Q psy2775         356 ---DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP--DQETSAE----LNVVELPPEISVPLQDVK  426 (785)
Q Consensus       356 ---~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~~~~~----~~v~~~~~~~~~~~~~~~  426 (785)
                         .+.|...+.     ....... .....+.|.++...+...|+|.|.  |..+...    +.+.........++..+.
T Consensus       294 ~~Y~v~~~~~~~-----~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~  367 (731)
T 2v5y_A          294 VAREVEYCTASG-----SWNDRQP-VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLE  367 (731)
T ss_dssp             CEEEEEEEESSS-----SCEEEEE-CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEE
T ss_pred             EEEEEEEEECCC-----CceEEec-cCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeE
Confidence               466655321     1111111 222458999999998889999998  8655332    333222211112333333


Q ss_pred             Ee--cCCcEEEEEEEeCC--------CceEEEEECCEEcccC-CCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-Cc
Q psy2775         427 VS--RDEKASFEIELTKG--------DALVKWYKDGKEIAFS-ENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GD  494 (785)
Q Consensus       427 v~--~g~~~~l~C~~~~~--------~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~  494 (785)
                      +.  ....+.|.......        ...+.|...+...... ....+........++|.++.......|+..|.|. |.
T Consensus       368 ~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  447 (731)
T 2v5y_A          368 VVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGR  447 (731)
T ss_dssp             EEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCE
T ss_pred             EEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCC
Confidence            32  34456666554320        1124454322100000 0000011123346888999988888899999997 54


Q ss_pred             ceeEEEEEEEc
Q psy2775         495 KESKATLTVEA  505 (785)
Q Consensus       495 ~~~~~~l~V~~  505 (785)
                      . .+..+.+..
T Consensus       448 s-~S~~~~~~T  457 (731)
T 2v5y_A          448 K-ESQELIVQT  457 (731)
T ss_dssp             E-ECCCEEEEC
T ss_pred             C-CCceEEEEc
Confidence            3 355555543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.74  E-value=8.3e-19  Score=171.27  Aligned_cols=173  Identities=14%  Similarity=0.150  Sum_probs=102.5

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--Ec---c---------CCCCEEEeecCCccceEEEEEEc
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--PL---Q---------ETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .+.+...|..+.+.+|++++|.|.+.+.|.+.|.|++++.  .+   .         ...++....    .....+|+|.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~   98 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG----YGTDFVFTIE   98 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE----EEEEEEEC--
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec----cCCEEEEEEC
Confidence            5667777999999999999999999888878899998542  11   0         011111111    1123479999


Q ss_pred             ccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccC-CC-eEEEeECCEEc
Q psy2775          78 SIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP-SP-KVEWYKDGKLI  154 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-~~-~v~W~~~g~~~  154 (785)
                      +++.+|+|.|+|.|.+..+.. .....|.|.. ...+|.+...+.......|+.++|.|.+.|.+ ++ .|+|++||..+
T Consensus        99 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  177 (233)
T 3bqu_C           99 NMLSEDVADYYCLQSDNLPYTFGGGTNLEIKR-ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  177 (233)
T ss_dssp             ---CCCCSEEEEEECSSSSCCBCCCCBC---C-CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred             CCCHHHCEEEEEEEecCCceeecCCEEEEEeC-CCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence            999999999999999876532 1223455542 22366666544333445799999999998854 43 79999999887


Q ss_pred             ccc-eEE----E-eC----CEEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         155 KDR-QIT----S-EK----NTHTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       155 ~~~-~~~----~-~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      ... ...    . .+    ....|.|.....+|+|.|+|.|.|..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  222 (233)
T 3bqu_C          178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT  222 (233)
T ss_dssp             -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC-
T ss_pred             CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            654 111    0 11    13478899999999999999999864

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.74  E-value=6.2e-17  Score=160.42  Aligned_cols=191  Identities=12%  Similarity=0.157  Sum_probs=125.5

Q ss_pred             cCCCeEEecCCcEEEEEEEeC---CCceEEEEECC--E--E-c-------------ccCCCEEEEEe--CcEEEEEEccC
Q psy2775         421 PLQDVKVSRDEKASFEIELTK---GDALVKWYKDG--K--E-I-------------AFSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~--~-~-------------~~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      .+....+.+|++++|.|.+.+   +.+.+.|+|..  .  . +             ....++.+..+  .....|+|.++
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   93 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSV   93 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCC
Confidence            345566889999999999987   36789999832  1  1 1             11245666544  34678999999


Q ss_pred             CCCCcEEEEEEEeec-Cc----ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         478 GLEDAGEYSCRVGDT-GD----KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      +.+|+|.|+|.|.|. +.    ....+.|.|..++........                                     
T Consensus        94 ~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~-------------------------------------  136 (257)
T 3gkz_A           94 SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSG-------------------------------------  136 (257)
T ss_dssp             CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CT-------------------------------------
T ss_pred             ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccC-------------------------------------
Confidence            999999999999985 11    123456777654210000000                                     


Q ss_pred             CCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeC--CEEec------------CCCCeeEEeeCCeEEEE
Q psy2775         553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRN--NKPLL------------SSPKKREIFDGENIILE  617 (785)
Q Consensus       553 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~--~~~i~------------~~~~~~~~~~~~~~~L~  617 (785)
                       ....+|.+...+....+.+|++++|.|.+.+.|.+ .+.|+|+  +..+.            ...++.....+..++|+
T Consensus       137 -~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  215 (257)
T 3gkz_A          137 -GGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLT  215 (257)
T ss_dssp             -TCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             -CCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEE
Confidence             00012455555567789999999999999999888 9999994  22211            01344444556677899


Q ss_pred             EccCCCCCCceeEEEEEEcCCcceEEE-EEEEEE
Q psy2775         618 LKEADSETDAGDYKVVATNELGSATHG-ARVTVD  650 (785)
Q Consensus       618 i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~  650 (785)
                      |.+++. +|+|.|.|.|.|........ ..|.|.
T Consensus       216 I~~v~~-~D~G~Y~C~~~~~~~~~fg~gt~l~v~  248 (257)
T 3gkz_A          216 ISSMEA-EDAASYFCHQWSSFPFTFGSGTKLEIK  248 (257)
T ss_dssp             ESSCCG-GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ECCCCh-HHCEEEEEEEccCCceEEcCCEEEEEE
Confidence            999999 99999999999865443333 334443

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.74  E-value=1.1e-17  Score=154.42  Aligned_cols=153  Identities=18%  Similarity=0.213  Sum_probs=111.3

Q ss_pred             CCeEEecCCcEEEEEEEeC---CCceEEEEE--CCEEc----------ccCCCEEEEEeCcEEEEEEccCCCCCcEEEEE
Q psy2775         423 QDVKVSRDEKASFEIELTK---GDALVKWYK--DGKEI----------AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC  487 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~---~~~~i~W~~--~~~~~----------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  487 (785)
                      ..+...+|++++|.|....   +.+.|.|+|  ++..+          ...+++.+..++   +|.|.+++.+|+|.|+|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEE
Confidence            3456779999999994322   356899999  88776          345666666444   79999999999999999


Q ss_pred             EEeec-Ccce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeee
Q psy2775         488 RVGDT-GDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER  564 (785)
Q Consensus       488 ~a~n~-g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~  564 (785)
                      .|.|. |...  ..+.|.|..+..                                                 +|.+.. 
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~~~-------------------------------------------------~P~i~~-  113 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQERVS-------------------------------------------------KPKISW-  113 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECCCC-------------------------------------------------CCEEEE-
T ss_pred             EEEeCCCceeEEEEEEEEEcCcCC-------------------------------------------------CCEEEE-
Confidence            99997 5543  355677765311                                                 022221 


Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                             .+..++|.|.+.|.|.|.|.|+++|..+ .+       ..  ..|.+.. .. +|+|.|+|.|.|..|...+.
T Consensus       114 -------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-------~~--~~i~~~~-~~-~d~G~Y~C~a~N~~~~~~s~  174 (182)
T 1hnf_A          114 -------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL-------SQ--RVITHKW-TT-SLSAKFKCTAGNKVSKESSV  174 (182)
T ss_dssp             -------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-------ES--SCEEEEC-CS-CEEEEEEEEEECSSCEEEEE
T ss_pred             -------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-------CC--cEEEEec-cc-CCCcEEEEEEEeCCCCcEEc
Confidence                   2347899999999999999999999887 21       11  2233333 45 89999999999999988877


Q ss_pred             EEE
Q psy2775         645 ARV  647 (785)
Q Consensus       645 ~~l  647 (785)
                      ..+
T Consensus       175 ~~~  177 (182)
T 1hnf_A          175 EPV  177 (182)
T ss_dssp             EEE
T ss_pred             cee
Confidence            665

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.74  E-value=2.9e-17  Score=161.97  Aligned_cols=177  Identities=14%  Similarity=0.177  Sum_probs=111.4

Q ss_pred             cCCCeEEecCCcEEEEEEEeC-CCc-----eEEEEECCEEccc--------CCCEE-------EE---EeCcEEEEEEcc
Q psy2775         421 PLQDVKVSRDEKASFEIELTK-GDA-----LVKWYKDGKEIAF--------SENVT-------LS---IDGKKQKLIIFS  476 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~-~~~-----~i~W~~~~~~~~~--------~~~~~-------~~---~~~~~~~L~i~~  476 (785)
                      ++....+.+|++++|.|.+.+ +.+     .+.|++++.....        .....       +.   .......|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            345567889999999999986 444     3999996432110        00000       00   001234599999


Q ss_pred             CCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         477 AGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      ++.+|+|.|+|.|.|. +.....+.|.|..+|                                                
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P------------------------------------------------  120 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP------------------------------------------------  120 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC------------------------------------------------
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCC------------------------------------------------
Confidence            9999999999999997 666677888887653                                                


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCCC------C-eeEEee-CC----eEEEEEccC
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSP------K-KREIFD-GE----NIILELKEA  621 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~~------~-~~~~~~-~~----~~~L~i~~~  621 (785)
                          .+.... ...+..|+.++|.|.+.| +|.| .|+|+|+|.++....      . ...... ++    ...|.|...
T Consensus       121 ----~v~~~~-~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~  195 (248)
T 3pv7_A          121 ----ASRLLL-DQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSS  195 (248)
T ss_dssp             ----EEEEEC-C--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--
T ss_pred             ----ceEEec-CCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCc
Confidence                211111 123456788899999999 7999 999999996543210      0 011111 11    246888888


Q ss_pred             CCCCCceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         622 DSETDAGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      .. +|.|.|+|.|.|..+....+..+.|.|
T Consensus       196 ~~-~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          196 QE-DPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CC-CTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cc-cCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            88 999999999999999865555555554

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.74  E-value=1.7e-17  Score=160.97  Aligned_cols=180  Identities=14%  Similarity=0.200  Sum_probs=119.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCC---eeEEEECCEEccC----------------CCCEEEeec---CCccceEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEP---DLLWYYNGEPLQE----------------TDEVVFSDQ---SDMHSYVSIVT   75 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~---~i~W~~~~~~~~~----------------~~~~~~~~~---~~~~~~~~~L~   75 (785)
                      .|..+.+.+|++|+|.|.+.+.+.+   .|.|+|++..+..                ..+..+...   .......++|+
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~   86 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA   86 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence            3456889999999999999887665   4899997653210                111111111   11111224599


Q ss_pred             EcccCCCCCeEEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEE
Q psy2775          76 IKSIKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKL  153 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~  153 (785)
                      |.+++.+|+|.|+|.|.+..+.... ...+.+.    .+|.+...+.......++.+.+.|.+ .+.|++.+.|++++..
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~  162 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI----AQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGG  162 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE----BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCC
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeee----cCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcc
Confidence            9999999999999999987665443 3334443    34444444445556677888888876 5578889999998766


Q ss_pred             cccceEEE--eCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE--EEEEee
Q psy2775         154 IKDRQITS--EKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESA--ANLNVD  201 (785)
Q Consensus       154 ~~~~~~~~--~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~  201 (785)
                      +.......  ..+    .+.|.|.++..+|+|.|+|.|.|..+.....  +.|.|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          163 EAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             ccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            54332111  111    3469999999999999999999998765444  444443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.74  E-value=6.7e-18  Score=168.76  Aligned_cols=203  Identities=14%  Similarity=0.084  Sum_probs=117.7

Q ss_pred             CCCCceEEEEEEeccceEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--CEEc-----------
Q psy2775         389 SVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKD--GKEI-----------  455 (785)
Q Consensus       389 ~~~d~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--~~~~-----------  455 (785)
                      ...|.+.|.|.+.+..+.....   ....+..++..+.+.+|++++|.|.+.++.+.+.|+|.  +...           
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~~~---~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~   80 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSGGG---GGMKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEV   80 (270)
T ss_dssp             ---------------------------CCCEEECSEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEE
T ss_pred             hhhhHHHHHHHHhccCCccccc---cceeEEeCCCeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCc
Confidence            4678999999998865533221   22344455667889999999999998877889999982  1110           


Q ss_pred             -ccC---C-CEEEEE-eCcEEEEEEccCCCCCcEEEEEEEeecC-----cceeEEEEEEEcCcccccccCCCeeEEeccC
Q psy2775         456 -AFS---E-NVTLSI-DGKKQKLIIFSAGLEDAGEYSCRVGDTG-----DKESKATLTVEAPAVEFLTKLPSVTLVPHLG  524 (785)
Q Consensus       456 -~~~---~-~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  524 (785)
                       ...   + ++.+.. ......|+|.+++.+|+|.|.|.+.+.+     .......|.|......               
T Consensus        81 ~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~---------------  145 (270)
T 3qib_D           81 LQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKN---------------  145 (270)
T ss_dssp             EEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTT---------------
T ss_pred             eecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccc---------------
Confidence             000   0 333332 2345789999999999999999999631     2223456777652100               


Q ss_pred             ceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEe-eeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecC
Q psy2775         525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLS  601 (785)
Q Consensus       525 ~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~  601 (785)
                                                     ..+|.+. ..+....+.+|+.++|.|.+.| .|.| .|.|+|+|..+..
T Consensus       146 -------------------------------~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  194 (270)
T 3qib_D          146 -------------------------------VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  194 (270)
T ss_dssp             -------------------------------CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             -------------------------------ccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCC
Confidence                                           0013322 2233445667999999999999 6777 8999999999865


Q ss_pred             CCCeeE------Ee-eCC----eEEEEEccCCCCCC-ceeEEEEEEcCCcce
Q psy2775         602 SPKKRE------IF-DGE----NIILELKEADSETD-AGDYKVVATNELGSA  641 (785)
Q Consensus       602 ~~~~~~------~~-~~~----~~~L~i~~~~~~~d-~G~Y~C~a~n~~g~~  641 (785)
                      +.....      .. .++    ...|.|..... +| +|.|+|.|.|.....
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          195 GVCTDPQPLKEQPALNDSRYALSSRLRVSATFW-QNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             TEEECSSCEESCTTSSSCCEEEEEEEEEEHHHH-HSTTCEEEEEEEECCBCT
T ss_pred             CcccccccccccccCCCCCEEEEEEEEEcHHHh-ccCCCeEEEEEEecCCCC
Confidence            322100      00 112    24578887766 66 999999999986643

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.73  E-value=3.3e-18  Score=167.18  Aligned_cols=175  Identities=14%  Similarity=0.163  Sum_probs=118.1

Q ss_pred             CCCeEEecCCcEEEEEEEeC-C-Cc-eEEEEECC--EEc------------ccCCCEEEEEeCcEEEEEEccCCCCCcEE
Q psy2775         422 LQDVKVSRDEKASFEIELTK-G-DA-LVKWYKDG--KEI------------AFSENVTLSIDGKKQKLIIFSAGLEDAGE  484 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~-~~-~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  484 (785)
                      +....+.+|++++|.|.+.+ + .+ .+.|+|++  ..+            ....++.....+....|+|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            55667889999999999987 3 23 69999863  221            11346666666667899999999999999


Q ss_pred             EEEEEeec-Cc---ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCe
Q psy2775         485 YSCRVGDT-GD---KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL  560 (785)
Q Consensus       485 Y~C~a~n~-g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~  560 (785)
                      |+|.|.|. +.   ....+.|.|...+.                                                .+|.
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------------~~p~  137 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPK------------------------------------------------AAPS  137 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCC------------------------------------------------CCCC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCC------------------------------------------------CCCc
Confidence            99999997 41   11233444432110                                                0133


Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCC-C-CceEEEeCCEEecCCCCeeE-Ee-eC----CeEEEEEccCCCCCCceeEEE
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASP-A-PSIVWFRNNKPLLSSPKKRE-IF-DG----ENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P-~-p~v~W~~~~~~i~~~~~~~~-~~-~~----~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      +........+.+|++++|.|.+.|.+ + +.|+|+|||..+..+..... .. .+    ..+.|.|.++.. +|+|.|+|
T Consensus       138 v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C  216 (234)
T 2j6e_L          138 VTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW-KSHRSYSC  216 (234)
T ss_dssp             CCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGT-TTSCCEEE
T ss_pred             ccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHc-CCCCeEEE
Confidence            33222222334688999999999964 4 38999999998865421100 11 11    235799999998 99999999


Q ss_pred             EEEcCCcceEEEE
Q psy2775         633 VATNELGSATHGA  645 (785)
Q Consensus       633 ~a~n~~g~~~~~~  645 (785)
                      .|.|..+...+++
T Consensus       217 ~a~n~~~~~~~~~  229 (234)
T 2j6e_L          217 QVTHEGSTVEKTV  229 (234)
T ss_dssp             EEEBTTBCCCEEE
T ss_pred             EEEeCCCceEEec
Confidence            9999988755443

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.73  E-value=1.4e-17  Score=152.67  Aligned_cols=154  Identities=19%  Similarity=0.278  Sum_probs=110.4

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC------------CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE------------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ..+.+.+|++|+|.|.+. .|.+.|.|++++..+..            ..+..+...+      .+|+|.+++.+|+|.|
T Consensus         3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~------~sL~I~~v~~~DsG~Y   75 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS------GSLTIYNLTSSDEDEY   75 (171)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTT------CCEEECSCCGGGCEEE
T ss_pred             cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCC------CeEEECCCChhhCceE
Confidence            467899999999999984 47889999999875421            1122221111      3499999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEE
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT  167 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  167 (785)
                      +|.|.+..+  ...+.|.|.. .+..|.+......        ..|.|.+.+.|.+.++|++||..+....      ...
T Consensus        76 ~C~~~n~~~--~~~~~L~V~~-~~~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~~~------~~~  138 (171)
T 1ccz_A           76 EMESPNITD--TMKFFLYVLE-MVSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLR------QKT  138 (171)
T ss_dssp             EEECTTCCS--CEEEEEEEEC-CCCCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEEES------SSE
T ss_pred             EEEEeCCCC--cEEEEEEEEC-cCCCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcCCc------ceE
Confidence            999998877  5566777764 2234555432211        2799999988899999999999875321      113


Q ss_pred             EEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775         168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  199 (785)
Q Consensus       168 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  199 (785)
                      |.+.  ..+|+|.|+|.|.|..+..+..+.|.
T Consensus       139 l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          139 MSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             EEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence            4333  47889999999999999877665543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.73  E-value=5.7e-17  Score=160.68  Aligned_cols=168  Identities=17%  Similarity=0.176  Sum_probs=113.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEec--CCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      ..|..+.+.+|++++|.|.+.+.  +.+.+.|+|++  ..   +         ....++.+...+    ...+|+|.+++
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~L~I~~v~   82 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG----TSASLAITGLQ   82 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET----TEEEEEECSCC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC----CEEEEEECCCC
Confidence            34556899999999999999877  77899999853  11   1         012344443222    12569999999


Q ss_pred             CCCCeEEEEEEEcCCe---eEEEEeeEEEeCCCCC-----------------CCceecCCCceEeccCCcEEEEEEEecc
Q psy2775          81 KREEGVYTVVAKNREG---EAKMDIPVKVNTGKPE-----------------KPSILEPLHDVSITEGESAVLSVQVGGE  140 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~---~~~~~~~v~v~~~~~~-----------------~p~i~~~~~~~~~~~G~~v~l~C~~~g~  140 (785)
                      .+|+|.|.|.+.+..+   .......|.|......                 .+.+..+ ....+.+|+.++|.|.+.+.
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~  161 (256)
T 3ux9_B           83 SEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVES-GGGLVQPGGSLRLSCAASGF  161 (256)
T ss_dssp             GGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEE-CCEEECTTCCEEEEEEEESS
T ss_pred             hhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcC-CCeEEcCCCeEEEEEEEeCC
Confidence            9999999999998643   2223355666532111                 1233333 34568899999999999886


Q ss_pred             C--CCeEEEeEC--CEEccc------------------ce--EEE--eCCEEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         141 P--SPKVEWYKD--GKLIKD------------------RQ--ITS--EKNTHTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       141 p--~~~v~W~~~--g~~~~~------------------~~--~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      +  .+.+.|+|+  +..+..                  ..  ...  .....+|+|.+++.+|+|.|+|.|.|..
T Consensus       162 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          162 TFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             CGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            6  679999986  322210                  01  111  1346679999999999999999999863

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.73  E-value=6.6e-17  Score=160.48  Aligned_cols=174  Identities=17%  Similarity=0.199  Sum_probs=119.8

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecC------CCeeEEEECC--EE---cc---------CCCCEEEeecCCccce
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVP------EPDLLWYYNG--EP---LQ---------ETDEVVFSDQSDMHSY   70 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p------~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~   70 (785)
                      ..+.+...|..+.+.+|++|+|.|.+.+.+      .+.+.|+++.  ..   +.         ...++.+....    .
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~----~   79 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSG----T   79 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----T
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCC----C
Confidence            457788889999999999999999998877      6789999852  21   11         12344443211    1


Q ss_pred             EEEEEEcccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCC--------------CCCce-ecCCCceEeccCCcEEEE
Q psy2775          71 VSIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKP--------------EKPSI-LEPLHDVSITEGESAVLS  134 (785)
Q Consensus        71 ~~~L~i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~--------------~~p~i-~~~~~~~~~~~G~~v~l~  134 (785)
                      ..+|+|.+++.+|+|.|.|.+.+..+.. .....|.|...+.              .+|.+ ........+.+|+.++|.
T Consensus        80 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~  159 (264)
T 2gjj_A           80 DFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKIS  159 (264)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEE
T ss_pred             EEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEE
Confidence            2569999999999999999999875422 2234566654210              01222 222334578999999999


Q ss_pred             EEEeccCC--CeEEEeECC--EE---cc---------------cce--EEE--eCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775         135 VQVGGEPS--PKVEWYKDG--KL---IK---------------DRQ--ITS--EKNTHTLTLIQCSTKDKGRYSVKVTNK  188 (785)
Q Consensus       135 C~~~g~p~--~~v~W~~~g--~~---~~---------------~~~--~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~  188 (785)
                      |.+.+.+.  +.+.|+++.  ..   +.               ...  +..  .....+|.|.+++.+|+|.|.|.|.|.
T Consensus       160 C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          160 CKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            99988764  799999963  21   11               011  111  234678999999999999999999985

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.73  E-value=9.8e-18  Score=153.80  Aligned_cols=153  Identities=17%  Similarity=0.164  Sum_probs=110.3

Q ss_pred             CeEEecCCcEEEEEEEeCCCceEEEEECCEEccc------------CCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         424 DVKVSRDEKASFEIELTKGDALVKWYKDGKEIAF------------SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      .+.+.+|++++|.|.+..+.+.|.|+|++..+..            .++..+  +....+|+|.+++.+|+|.|+|.|.|
T Consensus         4 ~v~~~~G~~VtL~c~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEcCCCEEEcCCCCCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEE--eCCCCeEEECCCChhhCceEEEEEeC
Confidence            4567899999999998667788999999875421            122222  22234799999999999999999998


Q ss_pred             cCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeee
Q psy2775         492 TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK  571 (785)
Q Consensus       492 ~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  571 (785)
                      ..+ ...+.|.|..++.     .                                            |.+.....     
T Consensus        82 ~~~-~~~~~L~V~~~~~-----~--------------------------------------------p~i~~~~~-----  106 (171)
T 1ccz_A           82 ITD-TMKFFLYVLEMVS-----K--------------------------------------------PMIYWECS-----  106 (171)
T ss_dssp             CCS-CEEEEEEEECCCC-----C--------------------------------------------CEEEEETT-----
T ss_pred             CCC-cEEEEEEEECcCC-----C--------------------------------------------CEEEEecC-----
Confidence            722 6778888876531     0                                            22221111     


Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT  648 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  648 (785)
                         ..+|.|.+.|.|.|.|+|+|+|..+.....         ..|.+.+  . .|+|.|+|.|.|..|....++.|.
T Consensus       107 ---~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~---------~~l~~~~--~-~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          107 ---NATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQW--T-NLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             ---TTEEEEECSSCSSCEEEEEETTEEEEEESS---------SEEEEEC--S-CCSSCEEEEEEETTEEEEEEECCC
T ss_pred             ---CcEEEEEeCCCCCcEEEEEECCEECcCCcc---------eEEEEec--c-CCCceEEEEEEcccCcccceeEEe
Confidence               127999999999999999999998853322         2344443  4 899999999999999887766553

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.73  E-value=5.3e-17  Score=156.11  Aligned_cols=182  Identities=18%  Similarity=0.294  Sum_probs=133.5

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ...||.| ..|..+.+.+|++++|.|.+.|.|.+.|.|++++..+...  .++.+.....    .++|+|.+++.+|+|.
T Consensus        16 ~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~   90 (215)
T 3mtr_A           16 HMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPS----ASYLEVTPDSENDFGN   90 (215)
T ss_dssp             CCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETT----EEEEEECCCSGGGCEE
T ss_pred             eecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCC----eeEEEEecCChhhCeE
Confidence            4457888 5777799999999999999999999999999999998765  4555544332    2679999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEe----ccCCC--eEEEeECCEEcccceEE
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG----GEPSP--KVEWYKDGKLIKDRQIT  160 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~----g~p~~--~v~W~~~g~~~~~~~~~  160 (785)
                      |+|.|.|..|.....+.|.|.. .|.+|.....     ...+..+.|.|...    +.|..  .+.|.+++.........
T Consensus        91 Y~C~a~n~~g~~~~~~~l~v~~-~P~~p~~~~~-----~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~  164 (215)
T 3mtr_A           91 YNCTAVNRIGQESLEFILVQAD-TPSSPSIDQV-----EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY  164 (215)
T ss_dssp             EEEEEECSSCEEEEEEEEEECC-CCCCCEEEEE-----EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEE
T ss_pred             EEEEEEECCCceEEEEEEEECC-CCCCCcceEE-----EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccc
Confidence            9999999999988888888863 3344432211     23467789999742    22322  48898887543221111


Q ss_pred             E---eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         161 S---EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       161 ~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      .   ......|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       165 ~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          165 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             EHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             ccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            0   0112479999999999999999999999977666555554

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.73  E-value=2.9e-17  Score=152.05  Aligned_cols=154  Identities=19%  Similarity=0.267  Sum_probs=109.7

Q ss_pred             CCceEecCCCeEEEEEEEEe-cCCCeeEEEEC-CEEcc------------CC--CCEEEeecCCccceEEEEEEcccCCC
Q psy2775          19 TKPVYAEENSEVTLEVRLVA-VPEPDLLWYYN-GEPLQ------------ET--DEVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~-~~~~~------------~~--~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      ...+.+.+|++|+|.|.+.+ .+.+.|.|+++ +..+.            ..  .|..+...      ..+|+|.+++.+
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~------~~sL~I~~v~~~   79 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT------NGALRIYNVSKE   79 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTT------TCCEEECSCCGG
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCC------CccEEEcCCCHH
Confidence            45789999999999999744 24679999994 32221            11  23333111      134999999999


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccceEEE
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITS  161 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~  161 (785)
                      |+|.|+|.+.+.. .....+.|.|.. .+..|.+..        .+..+.|.|.+ .| |.+.+.|+++|..+..     
T Consensus        80 D~G~Y~C~v~~~~-~~~~~~~L~V~~-~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-----  143 (180)
T 2dru_A           80 DRGDYYMRMLHET-EDQWKITMEVYE-MVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS-----  143 (180)
T ss_dssp             GCEEEEEEEESSS-EEEEEEEEEEEC-CCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-----
T ss_pred             HCeEEEEEEEcCC-eEEEEEEEEEEC-CCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-----
Confidence            9999999998876 566677788864 223344432        34569999999 66 8899999999988751     


Q ss_pred             eCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEE
Q psy2775         162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN  197 (785)
Q Consensus       162 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  197 (785)
                       ....+|.+..  .+|+|.|+|.|.|..+..++...
T Consensus       144 -~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          144 -LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             -ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             -CCCCEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence             1123566533  78999999999999987766543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.72  E-value=7.8e-17  Score=162.53  Aligned_cols=185  Identities=14%  Similarity=0.210  Sum_probs=123.8

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECCE--Ec---c--------------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNGE--PL---Q--------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~--~~---~--------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ...|..+.+.+|++++|.|.+.+.+  .+.+.|++++.  .+   .              ...++.+..+.  .....+|
T Consensus        26 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL  103 (291)
T 2gki_A           26 LQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK--SSSTAYM  103 (291)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG--GGTEEEE
T ss_pred             EEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC--CCCEEEE
Confidence            3456689999999999999998876  57899999531  11   0              01222222211  1123579


Q ss_pred             EEcccCCCCCeEEEEEEEcCC-e--eEE--EEeeEEEeCC------------CCCCCceecCCCceEeccCCcEEEEEEE
Q psy2775          75 TIKSIKKREEGVYTVVAKNRE-G--EAK--MDIPVKVNTG------------KPEKPSILEPLHDVSITEGESAVLSVQV  137 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~-~--~~~--~~~~v~v~~~------------~~~~p~i~~~~~~~~~~~G~~v~l~C~~  137 (785)
                      +|.+++.+|+|.|.|.+.+.. +  ...  ....|.|...            ...++.+...+..+.+.+|+.++|.|.+
T Consensus       104 ~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  183 (291)
T 2gki_A          104 ELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS  183 (291)
T ss_dssp             EECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE
T ss_pred             EECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc
Confidence            999999999999999999874 1  111  2345666530            1124456666667889999999999999


Q ss_pred             eccCCC------eEEEeEC--CEEcc-------------cce--EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE
Q psy2775         138 GGEPSP------KVEWYKD--GKLIK-------------DRQ--ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES  194 (785)
Q Consensus       138 ~g~p~~------~v~W~~~--g~~~~-------------~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  194 (785)
                      .+.+.+      .+.|+|+  |..+.             ...  ........+|+|.+++.+|+|.|.|.|.|.....-.
T Consensus       184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg  263 (291)
T 2gki_A          184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFG  263 (291)
T ss_dssp             SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEc
Confidence            887765      8999995  32111             111  122344678999999999999999999986543322


Q ss_pred             -EEEEEeec
Q psy2775         195 -AANLNVDP  202 (785)
Q Consensus       195 -~~~l~V~~  202 (785)
                       ...|.|..
T Consensus       264 ~gt~l~v~~  272 (291)
T 2gki_A          264 SGTKLEIKH  272 (291)
T ss_dssp             CCEEEEEEC
T ss_pred             CCEEEEEEe
Confidence             35666654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.72  E-value=2.7e-17  Score=152.31  Aligned_cols=153  Identities=18%  Similarity=0.229  Sum_probs=108.8

Q ss_pred             CCeEEecCCcEEEEEEEeCC--CceEEEEEC-CEEcc------------cC--CCEEEEEeCcEEEEEEccCCCCCcEEE
Q psy2775         423 QDVKVSRDEKASFEIELTKG--DALVKWYKD-GKEIA------------FS--ENVTLSIDGKKQKLIIFSAGLEDAGEY  485 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~--~~~i~W~~~-~~~~~------------~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y  485 (785)
                      ..+.+.+|++++|.|.+..+  .+.|.|+|+ +..+.            ..  +++.+  +....+|+|.+++.+|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence            45678899999999998553  678999994 32221            11  34444  22234699999999999999


Q ss_pred             EEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeee
Q psy2775         486 SCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF  565 (785)
Q Consensus       486 ~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~  565 (785)
                      +|.+.+.......+.|.|..++.                                                 .|.+.   
T Consensus        85 ~C~v~~~~~~~~~~~L~V~~~~~-------------------------------------------------~P~i~---  112 (180)
T 2dru_A           85 YMRMLHETEDQWKITMEVYEMVS-------------------------------------------------KPMIY---  112 (180)
T ss_dssp             EEEEESSSEEEEEEEEEEECCCC-------------------------------------------------CCEEE---
T ss_pred             EEEEEcCCeEEEEEEEEEECCCC-------------------------------------------------CCEEE---
Confidence            99998755445567777776421                                                 02222   


Q ss_pred             eeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         566 EEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                           ..++.++|.|.+ .| |.|.|.|+|++..+..         ....+|.+..  . +|+|.|+|.|.|..|...+.
T Consensus       113 -----~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~---------~~~~~l~~~~--~-~d~g~Y~C~a~N~~~~~~~~  174 (180)
T 2dru_A          113 -----WECSNATLTCEVLEG-TDVELKLYQGKEHLRS---------LRQKTMSYQW--T-NLRAPFKCKAVNRVSQESEM  174 (180)
T ss_dssp             -----EEGGGTEEEEECSSC-TTCEEEEEETTEEEEE---------ESSSEEEEEC--S-CCSSCEEEEEEETTEEEEEE
T ss_pred             -----ecCCCEEEEEEeCCC-CCCEEEEEECCeECcC---------CCCCEEEEEE--h-hcCccEEEEEecCcCccccc
Confidence                 134679999999 66 9999999999998751         1234566643  5 89999999999999987765


Q ss_pred             EEE
Q psy2775         645 ARV  647 (785)
Q Consensus       645 ~~l  647 (785)
                      ..+
T Consensus       175 ~~i  177 (180)
T 2dru_A          175 EVV  177 (180)
T ss_dssp             ECC
T ss_pred             eeE
Confidence            543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=164.09  Aligned_cols=190  Identities=15%  Similarity=0.196  Sum_probs=115.1

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---cc--C--CC----------CEEEeecCCccceEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---LQ--E--TD----------EVVFSDQSDMHSYVS   72 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~~--~--~~----------~~~~~~~~~~~~~~~   72 (785)
                      +|.+...|..+.+.+|++|+|.|.+.+.+.+.+.|++..  ..   +.  .  ..          +........  ....
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~   79 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGST--RKNL   79 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC----CCC
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCC--CCeE
Confidence            678888899999999999999999998888899999832  11   00  0  00          111111111  1124


Q ss_pred             EEEEcccCCCCCeEEEEEEEcCCe---eEEEEeeEEEeCCCCC-------------CCceecCCCceEeccCCcEEEEEE
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNREG---EAKMDIPVKVNTGKPE-------------KPSILEPLHDVSITEGESAVLSVQ  136 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~~~---~~~~~~~v~v~~~~~~-------------~p~i~~~~~~~~~~~G~~v~l~C~  136 (785)
                      +|+|.+++.+|+|.|.|.+.+..+   .......|.|......             .|.+...+....+.+|++++|.|.
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~  159 (259)
T 3omz_A           80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCL  159 (259)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCE
T ss_pred             EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEE
Confidence            599999999999999999998765   3333455666542111             356777777889999999999999


Q ss_pred             Eecc-CCCeEEEeECC--EEcc-------------cceEEE----eCCEEEEEEcccCCCCcEEEEEEEEcCC---ee--
Q psy2775         137 VGGE-PSPKVEWYKDG--KLIK-------------DRQITS----EKNTHTLTLIQCSTKDKGRYSVKVTNKE---GT--  191 (785)
Q Consensus       137 ~~g~-p~~~v~W~~~g--~~~~-------------~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~--  191 (785)
                      +.+. +.+.+.|+|.+  ..+.             ...+..    .....+|+|.+++.+|+|.|.|.+.+..   +.  
T Consensus       160 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~  239 (259)
T 3omz_A          160 YETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLI  239 (259)
T ss_dssp             EECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCE
T ss_pred             CCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceE
Confidence            8774 77899999843  1110             011111    1234569999999999999999998531   11  


Q ss_pred             EEEEEEEEeecC
Q psy2775         192 VESAANLNVDPY  203 (785)
Q Consensus       192 ~~~~~~l~V~~~  203 (785)
                      .-....|.|...
T Consensus       240 fg~GT~l~v~~~  251 (259)
T 3omz_A          240 FGKGTRVTVEPR  251 (259)
T ss_dssp             ECCCEEEEEEC-
T ss_pred             ECCCCEEEEeeC
Confidence            122366777644

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.72  E-value=2.4e-16  Score=156.14  Aligned_cols=183  Identities=19%  Similarity=0.272  Sum_probs=118.2

Q ss_pred             CCeEEecCCcEEEEEEEeC---CCceEEEEECC--EEc------------ccCCCEEEEEeCcEEEEEEccCCCCCcEEE
Q psy2775         423 QDVKVSRDEKASFEIELTK---GDALVKWYKDG--KEI------------AFSENVTLSIDGKKQKLIIFSAGLEDAGEY  485 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  485 (785)
                      ....+.+|++++|.|.+.+   +.+.+.|+|++  ...            ....++.+...+....|+|.+++.+|+|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            4577899999999999986   35679999842  111            123467776667778999999999999999


Q ss_pred             EEEEeec-Cc---ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeE
Q psy2775         486 SCRVGDT-GD---KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF  561 (785)
Q Consensus       486 ~C~a~n~-g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~  561 (785)
                      +|.|.|. +.   ....+.|.|..++..... .+.+                      .|...        .....++.+
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~-~~~~----------------------~~~~~--------~~~~~~~~~  138 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTIT-SYNV----------------------YYTKL--------SSSGSEVQL  138 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC-----------------------------------------------------CCEE
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCc-ccee----------------------EEeec--------CCCccceeE
Confidence            9999985 32   234467787765421100 0000                      00000        000001222


Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCC--CCceEEEeC--CEEe------cC-----------CCCeeEEee--CCeEEEEE
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPL------LS-----------SPKKREIFD--GENIILEL  618 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~~i------~~-----------~~~~~~~~~--~~~~~L~i  618 (785)
                       .......+.+|++++|.|.+.|.|  .+.+.|+|+  +..+      ..           ..++.+..+  +..++|+|
T Consensus       139 -~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  217 (256)
T 3ux9_B          139 -VESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQM  217 (256)
T ss_dssp             -EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             -EcCCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEE
Confidence             223345689999999999999987  679999996  3221      11           124444333  44678999


Q ss_pred             ccCCCCCCceeEEEEEEcCC
Q psy2775         619 KEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .+++. +|+|.|.|.|.|..
T Consensus       218 ~~v~~-~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          218 NSLRA-EDTAVYYCARYIDF  236 (256)
T ss_dssp             CSCCG-GGCEEEEEEEEETT
T ss_pred             CCCCh-hhCEEEEEEEEcCC
Confidence            99999 99999999999964

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.72  E-value=3.6e-17  Score=136.08  Aligned_cols=97  Identities=25%  Similarity=0.421  Sum_probs=87.0

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      -..+.||+|...|.++.+.+|++++|.|.+.|.|.+.|.|++++..|..+.++.+..++..    .+|+|.+++.+|+|.
T Consensus         8 ~~~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~   83 (107)
T 3knb_B            8 GDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAE----HGLLLTAALPTDAGV   83 (107)
T ss_dssp             --CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTE----EEEEESSCCGGGCEE
T ss_pred             CCCCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCce----EEEEEecCChhhCEE
Confidence            3456799999999999999999999999999999999999999999998888877665543    469999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEe
Q psy2775          87 YTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|.|..|.....+.|.|.
T Consensus        84 Y~C~a~N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           84 YVCRARNAAGEAYAAAAVTVL  104 (107)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEEE
Confidence            999999999999998889887

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.72  E-value=8.7e-17  Score=158.18  Aligned_cols=174  Identities=15%  Similarity=0.207  Sum_probs=120.6

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEE--------------CCEEccCC----CCEEEeecCCccceEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY--------------NGEPLQET----DEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~--------------~~~~~~~~----~~~~~~~~~~~~~~~~~   73 (785)
                      .+.+...|..+.+.+|++++|.| ..+.+.+.+.|+|              ++..+...    .++.+.....   ...+
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~s   77 (245)
T 4ei6_B            2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDG---SYFT   77 (245)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTT---SCEE
T ss_pred             CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccC---ceEE
Confidence            46778889999999999999999 5677888999998              22211111    4555443221   1256


Q ss_pred             EEEcccCCCCCeEEEEEEEcC----CeeEEEEeeEEEeCC--CCCCCcee-cCCCceEeccCCcEEEEEEEecc-CCC-e
Q psy2775          74 VTIKSIKKREEGVYTVVAKNR----EGEAKMDIPVKVNTG--KPEKPSIL-EPLHDVSITEGESAVLSVQVGGE-PSP-K  144 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~----~~~~~~~~~v~v~~~--~~~~p~i~-~~~~~~~~~~G~~v~l~C~~~g~-p~~-~  144 (785)
                      |+|.+++.+|+|.|+|.+.+.    .........|.|...  ...+|.+. ..+....+..|+.+.|.|.+.|. |.+ .
T Consensus        78 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  157 (245)
T 4ei6_B           78 LKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  157 (245)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeE
Confidence            999999999999999999953    222333445666531  12345443 34444556679999999999884 444 8


Q ss_pred             EEEeECCEEcccceEEE----------eCC----EEEEEEcccCCCC-cEEEEEEEEcCC
Q psy2775         145 VEWYKDGKLIKDRQITS----------EKN----THTLTLIQCSTKD-KGRYSVKVTNKE  189 (785)
Q Consensus       145 v~W~~~g~~~~~~~~~~----------~~~----~~~L~i~~~~~~d-~G~Y~C~a~n~~  189 (785)
                      +.|++||..+.......          .++    ...|.|.....+| .|.|+|.|.|..
T Consensus       158 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~  217 (245)
T 4ei6_B          158 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (245)
T ss_dssp             EEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECC
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECC
Confidence            99999999987543211          122    2358888888888 999999999865

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.72  E-value=1.4e-17  Score=161.47  Aligned_cols=174  Identities=14%  Similarity=0.146  Sum_probs=115.0

Q ss_pred             CCeEEecCCcEEEEEEEeCC-Cc---eEEEEECCEEccc----------------CCCEEEE-------EeCcEEEEEEc
Q psy2775         423 QDVKVSRDEKASFEIELTKG-DA---LVKWYKDGKEIAF----------------SENVTLS-------IDGKKQKLIIF  475 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~-~~---~i~W~~~~~~~~~----------------~~~~~~~-------~~~~~~~L~i~  475 (785)
                      .++.+..|++++|.|.+.++ .+   .|.|+|++..+..                ..+....       ......+|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            35678899999999999873 33   4899997653311                0111111       11123579999


Q ss_pred             cCCCCCcEEEEEEEeec-Cccee-EEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         476 SAGLEDAGEYSCRVGDT-GDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~-g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      +++.+|+|.|+|.|.|. +.... ...+.+..+                                               
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  121 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ-----------------------------------------------  121 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC-----------------------------------------------
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeeeecC-----------------------------------------------
Confidence            99999999999999986 43332 333444433                                               


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCC----eEEEEEccCCCCCCce
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAG  628 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G  628 (785)
                           |.+...........++.+.+.|.+ .+.|++.+.|++++..+...... ....++    .+.|.|.++.. +|+|
T Consensus       122 -----~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~-~d~g  194 (225)
T 4fmk_A          122 -----PENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE-PGIQAGTVTIISRYSLVPVGR-ADGV  194 (225)
T ss_dssp             -----CEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE-ECSSTTCEEEEEEEEECCCGG-GTTC
T ss_pred             -----CceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce-EEecCCCEEEEEEEEEeeCCH-HHCC
Confidence                 222222334455667777777765 56788899999988665432211 111122    34699999998 9999


Q ss_pred             eEEEEEEcCCcceEEEEEEEEE
Q psy2775         629 DYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       629 ~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .|+|.|+|..|....++.+.|.
T Consensus       195 ~YtC~a~N~~~~~~~~~~v~l~  216 (225)
T 4fmk_A          195 KVTCRVEHESFEEPILLPVTLS  216 (225)
T ss_dssp             EEEEEEECTTCSSCEEEEEECC
T ss_pred             EEEEEEEcCCCCeEEEEEEEEE
Confidence            9999999999987766666654

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.72  E-value=1.1e-17  Score=162.81  Aligned_cols=180  Identities=11%  Similarity=0.144  Sum_probs=117.9

Q ss_pred             CCCeeeecCCceE-ecCCCeEEEEEEEEec---CCC-eeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCC
Q psy2775          11 IPPTFSKKTKPVY-AEENSEVTLEVRLVAV---PEP-DLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        11 ~~p~~~~~~~~~~-v~~G~~v~l~C~~~g~---p~~-~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      .|..|..+|.... +.+|++++|.|.+.|.   |.+ .|.|++++..+..... ......++.....+.|+|.+++.+|+
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~   94 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG   94 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence            4455566666555 8999999999999887   665 8999999876543211 01111223334456899999999999


Q ss_pred             eEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeECCEEcccceE---
Q psy2775          85 GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKDGKLIKDRQI---  159 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~g~~~~~~~~---  159 (785)
                      |.|+|.|.|..+.......+........+|.+...........|+.+.|.|.+.|. |+ ..|+|++||..+.....   
T Consensus        95 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  174 (239)
T 1i1c_A           95 KTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPP  174 (239)
T ss_dssp             CCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCC
T ss_pred             CeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCc
Confidence            99999999987743222122211123356766544333333458899999999884 44 48999999998864321   


Q ss_pred             -EEeCCE----EEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         160 -TSEKNT----HTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       160 -~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                       ...++.    ..|.|.....+|.|.|+|.|.|...
T Consensus       175 ~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          175 TMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             eECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence             112222    2355555555689999999999863

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.72  E-value=6.3e-17  Score=161.51  Aligned_cols=176  Identities=15%  Similarity=0.197  Sum_probs=120.7

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEc------------cCC----CCEEEeecCCccceEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPL------------QET----DEVVFSDQSDMHSYVS   72 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~------------~~~----~~~~~~~~~~~~~~~~   72 (785)
                      ..+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|.  +...            ...    .++.+..+..   ...
T Consensus        25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~  100 (268)
T 3pl6_D           25 GGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEG---SVS  100 (268)
T ss_dssp             --SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTS---SSE
T ss_pred             cCceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCC---CEE
Confidence            356778889999999999999999986 57789999982  2111            111    4555443211   125


Q ss_pred             EEEEcccCCCCCeEEEEEEEcC--CeeEEEEeeEEEeCC--CCCCCcee-cCCCceEeccCCcEEEEEEEeccCCC--eE
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNR--EGEAKMDIPVKVNTG--KPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSP--KV  145 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~--~~~~~~~~~v~v~~~--~~~~p~i~-~~~~~~~~~~G~~v~l~C~~~g~p~~--~v  145 (785)
                      +|+|.+++.+|+|.|+|.+.+.  .........|.|...  ...+|.+. ..+....+..|+.++|.|.+.|.+++  .+
T Consensus       101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v  180 (268)
T 3pl6_D          101 TLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  180 (268)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             EEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEE
Confidence            6999999999999999999973  333333445666531  12255544 33445556679999999999886554  89


Q ss_pred             EEeECCEEcccceEEE----------eCC----EEEEEEcccCCCC-cEEEEEEEEcCCe
Q psy2775         146 EWYKDGKLIKDRQITS----------EKN----THTLTLIQCSTKD-KGRYSVKVTNKEG  190 (785)
Q Consensus       146 ~W~~~g~~~~~~~~~~----------~~~----~~~L~i~~~~~~d-~G~Y~C~a~n~~g  190 (785)
                      +|++||..+.......          .++    ...|.|.....+| +|.|+|.|.|...
T Consensus       181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            9999999886542211          111    2457888877777 9999999998753

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.72  E-value=4.8e-18  Score=163.47  Aligned_cols=176  Identities=16%  Similarity=0.160  Sum_probs=109.7

Q ss_pred             CCeEeeeeeeee--eeecCeEEEEEEEecC---CC-CceEEEeCCEEecCCCCeeE-EeeC----CeEEEEEccCCCCCC
Q psy2775         558 APLFIERFEEKT--VKEKGTIRLMAKVKAS---PA-PSIVWFRNNKPLLSSPKKRE-IFDG----ENIILELKEADSETD  626 (785)
Q Consensus       558 ~p~~~~~~~~~~--v~~g~~v~l~C~~~g~---P~-p~v~W~~~~~~i~~~~~~~~-~~~~----~~~~L~i~~~~~~~d  626 (785)
                      +|.+...+....  +.+|++++|.|.+.|.   |+ +.|+|+|++..+........ ...+    ..+.|.|.+++. +|
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   87 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW-MS   87 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHH-HT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHc-CC
Confidence            355554444444  8899999999999987   44 69999999988754321111 1111    235799999999 99


Q ss_pred             ceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEe
Q psy2775         627 AGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLV  706 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~  706 (785)
                      +|.|+|.|.|..+.......+...                                     +.+..+|.+........ .
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~-------------------------------------~~~~~~P~v~~~~~~~~-~  129 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKI-------------------------------------KGLVRAPQVYILPPPAE-Q  129 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCC-------------------------------------CCCCBCCEEEEECCCGG-G
T ss_pred             CCeEEEEEECCcCCCcceEEEeec-------------------------------------CCCCCCCEEEEECCChH-H
Confidence            999999999998754222222110                                     01224455433222211 2


Q ss_pred             ecCCeEEEEEEEec-CCCC-ceEEeECCEEeeecccccc--chhh-hcccccceeeee---eceEEEEEEeccc
Q psy2775         707 KKGEDLKIEVRFKA-LPPP-KAEWTVNGTVIVPSKRVKG--KAEF-IKKLDDLEVKER---ENAVLEVEVTSDK  772 (785)
Q Consensus       707 ~~g~~~~l~C~~~g-~P~p-~i~W~~~~~~~~~~~~~~~--~~~~-~~~l~~~~v~~~---~~~~~~c~~~~~~  772 (785)
                      ..|+.++|.|.+.| +|+| .|+|++||..+........  ..+- ........+...   |.|.|+|.+.++.
T Consensus       130 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~  203 (218)
T 2rgs_A          130 LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEG  203 (218)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTT
T ss_pred             hcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCC
Confidence            25999999999999 6776 9999999998854332211  1110 011111233333   4899999999744

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.72  E-value=1.6e-17  Score=158.43  Aligned_cols=179  Identities=18%  Similarity=0.231  Sum_probs=111.6

Q ss_pred             CCeeeecCCceE-ecCCCeEEEEEEEEecC----CCeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          12 PPTFSKKTKPVY-AEENSEVTLEVRLVAVP----EPDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        12 ~p~~~~~~~~~~-v~~G~~v~l~C~~~g~p----~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      |..+..+|.... +.+|++++|.|.+.|.+    .+.|.|++++..+..... ......++.....+.|.|...+.+|+|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            334444555444 38999999999998875    349999999987754311 111122222233345666666666799


Q ss_pred             EEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeECCEEcccce---EE
Q psy2775          86 VYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKDGKLIKDRQ---IT  160 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~g~~~~~~~---~~  160 (785)
                      .|+|.|.|..+.......+.+......+|.+...........|..+.|.|.+.|. |+ +.|+|++||..+....   ..
T Consensus        82 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  161 (207)
T 1l6x_A           82 EYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPV  161 (207)
T ss_dssp             CEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCE
T ss_pred             eEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCce
Confidence            9999999987753222223211123356665543322222356679999999885 44 4999999999876432   11


Q ss_pred             -EeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         161 -SEKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       161 -~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                       ..++    ...|.|.....+|.|.|+|.|.|...
T Consensus       162 ~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          162 LDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence             1122    12455666556789999999999763

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.71  E-value=1.1e-18  Score=170.38  Aligned_cols=175  Identities=11%  Similarity=0.201  Sum_probs=98.1

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCE--Ee------------cCCCCeeEEeeCCeEEEEEccCCCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PL------------LSSPKKREIFDGENIILELKEADSE  624 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~i------------~~~~~~~~~~~~~~~~L~i~~~~~~  624 (785)
                      +.+...+....+.+|++++|.|.+.|.|.+.|.|+|++.  .+            ....++.....++..+|.|.+++. 
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-  102 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS-  102 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C-
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH-
Confidence            555666778889999999999999999888999999532  11            012233333344556899999999 


Q ss_pred             CCceeEEEEEEcCCcceEE-EEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCc
Q psy2775         625 TDAGDYKVVATNELGSATH-GARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPE  703 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~  703 (785)
                      +|+|.|.|.|.|..+.... ...|.|..                                      ...+|.+....+..
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~--------------------------------------~~~~p~v~~~~~~~  144 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKR--------------------------------------ADAAPTVSIFPPSS  144 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---C--------------------------------------CCBCCEEEEECCCH
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeC--------------------------------------CCCCCEEEEeCCCH
Confidence            9999999999998763322 22344431                                      11244443211111


Q ss_pred             EEeecCCeEEEEEEEecC-CCC-ceEEeECCEEeeec-cc-cccc--h----hhhcccccceeeeeeceEEEEEEecccc
Q psy2775         704 VLVKKGEDLKIEVRFKAL-PPP-KAEWTVNGTVIVPS-KR-VKGK--A----EFIKKLDDLEVKERENAVLEVEVTSDKA  773 (785)
Q Consensus       704 ~~~~~g~~~~l~C~~~g~-P~p-~i~W~~~~~~~~~~-~~-~~~~--~----~~~~~l~~~~v~~~~~~~~~c~~~~~~~  773 (785)
                       .+..|+.++|.|.+.|. |+| .|+|++||..+..+ .. ....  .    .....|.+..+...|.|.|+|.+.++..
T Consensus       145 -~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          145 -EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             -HHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             -HhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence             13369999999999995 444 79999999988766 11 1111  1    1123466666666789999999998554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.71  E-value=1.4e-16  Score=156.14  Aligned_cols=174  Identities=11%  Similarity=0.196  Sum_probs=120.1

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--------------EEc---cCCCCEEEeecCCccceEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--------------EPL---QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +.+...|..+.+.+|++++|.|.+.+ +.+.+.|||..              ...   ....++.+.....   ...+|+
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~sL~   78 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDD---YHSEMN   78 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTT---SCEEEE
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCC---CEEEEE
Confidence            46777889999999999999999875 77899999821              111   1123554443221   125699


Q ss_pred             EcccCCCCCeEEEEEEEc--CC-eeEEEEeeEEEeCC--CCCCCcee-cCCCceEeccCCcEEEEEEEec-cCCC-eEEE
Q psy2775          76 IKSIKKREEGVYTVVAKN--RE-GEAKMDIPVKVNTG--KPEKPSIL-EPLHDVSITEGESAVLSVQVGG-EPSP-KVEW  147 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~--~~-~~~~~~~~v~v~~~--~~~~p~i~-~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W  147 (785)
                      |.+++.+|+|.|+|.+.+  .. ........|.|...  ...+|.+. ..+....+..|+.+.|.|.+.| .|.+ .++|
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  158 (240)
T 3q5y_A           79 MSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSW  158 (240)
T ss_dssp             ECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             ECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEE
Confidence            999999999999999983  22 22233345666531  22455554 3444555667999999999988 5555 7999


Q ss_pred             eECCEEcccceE------EEeCCE----EEEEEcccCCCC-cEEEEEEEEcCCe
Q psy2775         148 YKDGKLIKDRQI------TSEKNT----HTLTLIQCSTKD-KGRYSVKVTNKEG  190 (785)
Q Consensus       148 ~~~g~~~~~~~~------~~~~~~----~~L~i~~~~~~d-~G~Y~C~a~n~~g  190 (785)
                      ++||..+.....      ...++.    +.|.|.....+| .|.|+|.|.|...
T Consensus       159 ~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          159 WVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            999999865422      122232    348899988888 7799999998653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.71  E-value=2.5e-16  Score=156.31  Aligned_cols=188  Identities=18%  Similarity=0.201  Sum_probs=121.8

Q ss_pred             CcccccCCCeEEecCCcEEEEEEEeCC-------CceEEEEEC--CEEcc------------cCCCEEEEEeCcEEEEEE
Q psy2775         416 PEISVPLQDVKVSRDEKASFEIELTKG-------DALVKWYKD--GKEIA------------FSENVTLSIDGKKQKLII  474 (785)
Q Consensus       416 ~~~~~~~~~~~v~~g~~~~l~C~~~~~-------~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~L~i  474 (785)
                      +.+...+..+.+.+|++++|.|.+.+.       .+.+.|+|+  +..+.            ...++.+..++....|+|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            344455677789999999999999874       467999985  22111            135666666666789999


Q ss_pred             ccCCCCCcEEEEEEEeec-Cc-ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         475 FSAGLEDAGEYSCRVGDT-GD-KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       475 ~~~~~~d~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      .+++.+|+|.|.|.|.|. +. ....+.|.|..++..-...         ......                        
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~---------~~~~~~------------------------  132 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGG---------GSGGGG------------------------  132 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC----------------------------------------------
T ss_pred             CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccc---------cccccc------------------------
Confidence            999999999999999986 32 2334678887653100000         000000                        


Q ss_pred             CCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCC--CceEEEeCC--E---Eec---C-----------CCCeeEEe--
Q psy2775         553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNN--K---PLL---S-----------SPKKREIF--  609 (785)
Q Consensus       553 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~~--~---~i~---~-----------~~~~~~~~--  609 (785)
                      .....++..+.......+.+|++++|.|.+.+.|.  +.+.|||++  .   .+.   .           ..++.+..  
T Consensus       133 ~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~  212 (264)
T 2gjj_A          133 SGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDT  212 (264)
T ss_dssp             ------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEET
T ss_pred             cccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcC
Confidence            00000011122222347899999999999999875  799999963  2   121   0           22333332  


Q ss_pred             eCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         610 DGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       610 ~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .....+|+|.+++. +|+|.|.|.|.|.
T Consensus       213 ~~~~~~L~I~~v~~-~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          213 SSSTAFMQLNSLTS-EDSADYYCVRSGN  239 (264)
T ss_dssp             TTTEEEEEECSCCG-GGCEEEEEEEECS
T ss_pred             CCCEEEEEECcCCc-ccCEEEEEEEecC
Confidence            23567899999999 9999999999995

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.71  E-value=6.4e-16  Score=143.45  Aligned_cols=239  Identities=16%  Similarity=0.271  Sum_probs=159.5

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEe-cC---CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVA-VP---EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ++.++..|....+..|+.++|+|.+.| .|   +..++|+|++..+....              ..|+|..+...|+|.|
T Consensus         2 ~~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT--------------~tLti~s~t~sdSG~Y   67 (304)
T 3shs_A            2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------------ATLTVADATSENAGSY   67 (304)
T ss_dssp             CEEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS--------------SEEEESSCCGGGCEEE
T ss_pred             ccEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc--------------ceEEeeeccccCCeEE
Confidence            345667788999999999999999854 46   45899999998865422              2389999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCCCCCCcee-cCCCceEeccCCcEEEEEEE--ec-cC-----CCeEEEeECCEEcccce
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQV--GG-EP-----SPKVEWYKDGKLIKDRQ  158 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~-~~~~~~~~~~G~~v~l~C~~--~g-~p-----~~~v~W~~~g~~~~~~~  158 (785)
                      +|++.+..+.......+.|...  ..+.+. ..+....+..|..+.|.+.+  .| .|     ..+++|++||..+... 
T Consensus        68 qCvVTDa~Gcs~tSs~VtVT~~--a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA-  144 (304)
T 3shs_A           68 KVTVQDTDTMTSVESEVFLMEE--AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-  144 (304)
T ss_dssp             EEEEEETTTCCEEECCCEEECB--CCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS-
T ss_pred             EEEEEECCCCeeeeeeEEEecc--CceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc-
Confidence            9999998876655545555431  122232 23445556678899999987  43 44     4599999999877432 


Q ss_pred             EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCee--EEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCC
Q psy2775         159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT--VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP  236 (785)
Q Consensus       159 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  236 (785)
                             ..|++......++|.|+|.+.|..+.  .+.++.+.+....                                
T Consensus       145 -------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~--------------------------------  185 (304)
T 3shs_A          145 -------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMN--------------------------------  185 (304)
T ss_dssp             -------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEE--------------------------------
T ss_pred             -------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccc--------------------------------
Confidence                   25788888899999999999998763  3334444443211                                


Q ss_pred             eeeecCCcceeCCCCeEEEEEEEc--------cCCCC--eEEEEE--CCEEcc------------cceEEEeCCEEEEEE
Q psy2775         237 SILEPLHDVSITEGESAVLSVQVG--------GEPSP--KVEWYK--DGKLIK------------DRQITSEKNTHTLTL  292 (785)
Q Consensus       237 ~~~~~~~~~~~~~G~~~~l~C~~~--------g~p~~--~v~W~~--~~~~l~------------~~~~~~~~~~~~l~i  292 (785)
                      .-..-.....+..|+.+.|...+.        |-|..  .+.||.  .|+..+            ...+..   ...|.-
T Consensus       186 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  262 (304)
T 3shs_A          186 VDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITP---DGHLFK  262 (304)
T ss_dssp             EEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECT---TSCEEE
T ss_pred             cchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCC---Ccceee
Confidence            001112234566788888877653        22322  467986  332211            111111   124667


Q ss_pred             ccCCCCCCeEEEEEEEe
Q psy2775         293 IQCSTKDKGRYSVKVTN  309 (785)
Q Consensus       293 ~~~~~~d~G~Y~C~~~n  309 (785)
                      .....+|...|.|.+..
T Consensus       263 ~~~~~~~~~~~~~~~~~  279 (304)
T 3shs_A          263 ESATYDDTAKFWCVAKL  279 (304)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             cccccccchheeeHHHH
Confidence            78888999999999864

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.71  E-value=1.6e-16  Score=157.16  Aligned_cols=197  Identities=18%  Similarity=0.238  Sum_probs=125.6

Q ss_pred             ceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECC--EEc---c-----------cceE----EEeCCEEEEEEcccC
Q psy2775         115 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG--KLI---K-----------DRQI----TSEKNTHTLTLIQCS  174 (785)
Q Consensus       115 ~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g--~~~---~-----------~~~~----~~~~~~~~L~i~~~~  174 (785)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.|+|..  ..+   .           ...+    .......+|+|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            4555667788999999999999998899999999832  111   0           0011    112456789999999


Q ss_pred             CCCcEEEEEEEEcCCe----eEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCC
Q psy2775         175 TKDKGRYSVKVTNKEG----TVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEG  250 (785)
Q Consensus       175 ~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G  250 (785)
                      .+|+|.|.|.|.|..+    .....+.|.|........ ....           .-......+.+|.+...+....+.+|
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~-~~~~-----------~~~~~~~~~~~~~v~~~p~~~~v~~G  152 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSG-GGGS-----------GGGGSGGGGSEAAVTQSPRNKVTVTG  152 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------------------CCEEESCSEEEEETT
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcC-CCCc-----------CcccCCCCcCccEEEecCCEEEEeCC
Confidence            9999999999998754    222345677763100000 0000           00000001134567777777788899


Q ss_pred             CeEEEEEEEccCCCCeEEEEECC--EEcc------------------cceEE-EeCCEEEEEEccCCCCCCeEEEEEEEe
Q psy2775         251 ESAVLSVQVGGEPSPKVEWYKDG--KLIK------------------DRQIT-SEKNTHTLTLIQCSTKDKGRYSVKVTN  309 (785)
Q Consensus       251 ~~~~l~C~~~g~p~~~v~W~~~~--~~l~------------------~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~n  309 (785)
                      +.++|.|.+.+. .+.+.|++..  ..+.                  ..... ......+|.|.+++.+|+|.|+|.|.|
T Consensus       153 ~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n  231 (256)
T 3tf7_C          153 ENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSD  231 (256)
T ss_dssp             CCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecC
Confidence            999999999876 6799999832  1111                  00000 123455899999999999999999999


Q ss_pred             CCCceEEE--EEEEEec
Q psy2775         310 KEGTVESA--ANLNVDQ  324 (785)
Q Consensus       310 ~~g~~~~~--~~l~v~~  324 (785)
                      ..|.....  ..|.|..
T Consensus       232 ~~g~~~fG~gt~l~v~~  248 (256)
T 3tf7_C          232 APGQLYFGEGSKLTVLE  248 (256)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             CCCccEECCCeEEEEEc
Confidence            87654322  5666664

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.71  E-value=1.8e-16  Score=152.80  Aligned_cols=170  Identities=14%  Similarity=0.178  Sum_probs=117.8

Q ss_pred             CCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EE---cc--------------cCCCEEEEEe--CcEEEEEEccCC
Q psy2775         423 QDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KE---IA--------------FSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~---~~--------------~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      ....+.+|++++|.|.+.+ +  .+.+.|+|..  ..   +.              ...++.+..+  .....|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            4577889999999999987 3  5679999852  11   10              1246666654  346789999999


Q ss_pred             CCCcEEEEEEEeec-Cc---ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         479 LEDAGEYSCRVGDT-GD---KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      .+|+|.|.|.+.|. +.   ....+.|.|...+.                                              
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~----------------------------------------------  121 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA----------------------------------------------  121 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC----------------------------------------------
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCC----------------------------------------------
Confidence            99999999999986 32   22345777765311                                              


Q ss_pred             CCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC--CceEEEeCCEEecCCCCeeEEeeCCe----EEEEEccCCCCCCc
Q psy2775         555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA--PSIVWFRNNKPLLSSPKKREIFDGEN----IILELKEADSETDA  627 (785)
Q Consensus       555 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~--p~v~W~~~~~~i~~~~~~~~~~~~~~----~~L~i~~~~~~~d~  627 (785)
                        .+|.+.... ...+.+|+.++|.|.+.|. |.  +.|.|++++..+...........++.    +.|.|..... +|+
T Consensus       122 --~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~  197 (220)
T 2fbj_H          122 --RNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVEC-PEG  197 (220)
T ss_dssp             --BCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGS-CTT
T ss_pred             --CCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHc-CCC
Confidence              013333322 3346789999999999987 87  69999999876521000011112222    3589988887 899


Q ss_pred             eeEEEEEEcCCcceE
Q psy2775         628 GDYKVVATNELGSAT  642 (785)
Q Consensus       628 G~Y~C~a~n~~g~~~  642 (785)
                      |.|+|.|.|..|...
T Consensus       198 g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          198 ESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CEEEEEEEETTSCCE
T ss_pred             CeEEEEEEcCCCceE
Confidence            999999999999765

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.71  E-value=1e-16  Score=154.74  Aligned_cols=175  Identities=14%  Similarity=0.139  Sum_probs=118.7

Q ss_pred             CCCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EE---c-c---------------cCCCEEEEEe--CcEEEEEEc
Q psy2775         422 LQDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KE---I-A---------------FSENVTLSID--GKKQKLIIF  475 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~---~-~---------------~~~~~~~~~~--~~~~~L~i~  475 (785)
                      +....+.+|++++|.|.+.+ +  .+.+.|+|++  ..   + .               ...++.+..+  .....|+|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            34567889999999999997 3  5789999853  11   1 0               0246666553  345689999


Q ss_pred             cCCCCCcEEEEEEEeecC-cc-e--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccC
Q psy2775         476 SAGLEDAGEYSCRVGDTG-DK-E--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCP  551 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~g-~~-~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  551 (785)
                      +++.+|+|.|+|.+.|.+ .. .  ..+.|.|...+.                                           
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------  123 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATT-------------------------------------------  123 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC-------------------------------------------
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCC-------------------------------------------
Confidence            999999999999999863 21 1  346777764210                                           


Q ss_pred             CCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEec--CCCCeeE-EeeCCeEEEEEccCCCCCC
Q psy2775         552 LGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLL--SSPKKRE-IFDGENIILELKEADSETD  626 (785)
Q Consensus       552 ~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~--~~~~~~~-~~~~~~~~L~i~~~~~~~d  626 (785)
                           .+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+.  ....... -.....+.|.|.++.. +|
T Consensus       124 -----~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~  197 (220)
T 1pz5_B          124 -----TAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTW-PS  197 (220)
T ss_dssp             -----BCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGT-TT
T ss_pred             -----CCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhc-CC
Confidence                 01333332223346789999999999997 999 999999887410  0111100 0001235799999887 67


Q ss_pred             ceeEEEEEEcCCcceEEEEE
Q psy2775         627 AGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~  646 (785)
                       |.|+|.|.|..|...+++.
T Consensus       198 -g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          198 -QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             -SCCEEEEEEGGGTEEEEEE
T ss_pred             -ceEEEEEEECCccEeeeec
Confidence             9999999999998766544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.71  E-value=1.8e-16  Score=158.03  Aligned_cols=176  Identities=14%  Similarity=0.163  Sum_probs=116.8

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecC-----CCeeEEEECC--EE---cc---------CCCCEEEeecCCccc
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVP-----EPDLLWYYNG--EP---LQ---------ETDEVVFSDQSDMHS   69 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~   69 (785)
                      ....+.+...|..+.+.+|++++|.|.+.+.+     .+.+.|++++  ..   +.         ...++.+...+    
T Consensus        12 ~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~----   87 (268)
T 1x9q_A           12 KASDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSG----   87 (268)
T ss_dssp             --CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----
T ss_pred             ccccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCC----
Confidence            34567888889999999999999999998876     4789999853  11   11         12344443211    


Q ss_pred             eEEEEEEcccCCCCCeEEEEEEEcCCeeE-EEEeeEEEeCCCC-----CCCc--------------eecCCCceEeccCC
Q psy2775          70 YVSIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKP-----EKPS--------------ILEPLHDVSITEGE  129 (785)
Q Consensus        70 ~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v~~~~~-----~~p~--------------i~~~~~~~~~~~G~  129 (785)
                      ...+|+|.+++.+|+|.|.|.+.+..+.. .....|.|.....     .+|.              ....+....+.+|+
T Consensus        88 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~  167 (268)
T 1x9q_A           88 TDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGG  167 (268)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTC
T ss_pred             CEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCC
Confidence            12569999999999999999999875422 2233455543111     1121              22233467889999


Q ss_pred             cEEEEEEEeccCC--CeEEEeEC--CEEcc--------------------cceEEE--e--CCEEEEEEcccCCCCcEEE
Q psy2775         130 SAVLSVQVGGEPS--PKVEWYKD--GKLIK--------------------DRQITS--E--KNTHTLTLIQCSTKDKGRY  181 (785)
Q Consensus       130 ~v~l~C~~~g~p~--~~v~W~~~--g~~~~--------------------~~~~~~--~--~~~~~L~i~~~~~~d~G~Y  181 (785)
                      .++|.|.+.+.+.  +.+.|+++  +..+.                    ...+..  +  ....+|.|.+++.+|+|.|
T Consensus       168 ~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  247 (268)
T 1x9q_A          168 AMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIY  247 (268)
T ss_dssp             CEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             cEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEE
Confidence            9999999988653  78999984  22210                    111111  1  2356899999999999999


Q ss_pred             EEEEEcC
Q psy2775         182 SVKVTNK  188 (785)
Q Consensus       182 ~C~a~n~  188 (785)
                      .|.|.+.
T Consensus       248 ~C~a~~~  254 (268)
T 1x9q_A          248 YCTGASY  254 (268)
T ss_dssp             EEEEEET
T ss_pred             EEEEccC
Confidence            9999875

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.71  E-value=1.2e-16  Score=157.88  Aligned_cols=173  Identities=14%  Similarity=0.169  Sum_probs=117.5

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEc------c-----------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPL------Q-----------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      ...|..+.+.+|++|+|.|.+.+.+  .+.+.|||+.  ..+      .           ...|+.+..+.  ......|
T Consensus        10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL   87 (261)
T 2xqy_G           10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDK--SSSTVYI   87 (261)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG--GGTEEEE
T ss_pred             EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecC--CCCEEEE
Confidence            3446788999999999999998876  5789999863  211      0           02344443321  1123569


Q ss_pred             EEcccCCCCCeEEEEEEEcCCe-e--EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeE
Q psy2775          75 TIKSIKKREEGVYTVVAKNREG-E--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYK  149 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~-~--~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~  149 (785)
                      +|.+++.+|+|.|.|.+.+..+ .  ......|.|....+.+|.+........+..|+.++|.|.+.+. |.+ .|.|++
T Consensus        88 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k  167 (261)
T 2xqy_G           88 QLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS  167 (261)
T ss_dssp             EECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             EEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence            9999999999999999998643 1  1123567776534455666543323346789999999999875 666 999999


Q ss_pred             CCEEcccc---eEEEe---CCEEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         150 DGKLIKDR---QITSE---KNTHTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       150 ~g~~~~~~---~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      ++..+...   .....   ...+.|.|.....+| |.|+|.|.|....
T Consensus       168 ~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          168 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             GTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            98765321   11111   113578998888888 9999999997654

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.71  E-value=1.2e-16  Score=154.26  Aligned_cols=171  Identities=14%  Similarity=0.247  Sum_probs=117.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECCE--E---c---c-------------CCCCEEEeecCCccceEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNGE--P---L---Q-------------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~--~---~---~-------------~~~~~~~~~~~~~~~~~~~   73 (785)
                      ..|..+.+.+|++|+|.|.+.+.+  .+.+.||+...  .   +   .             ...++.+..+...  ...+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~s   82 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSK--NTAF   82 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGG--TEEE
T ss_pred             EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCC--CEEE
Confidence            456678899999999999998743  57899998431  1   0   0             1234444433211  2356


Q ss_pred             EEEcccCCCCCeEEEEEEEcCC--eeEEEEeeEEEeCCCCCCCcee-cCCCceEeccCCcEEEEEEEec-cCC--CeEEE
Q psy2775          74 VTIKSIKKREEGVYTVVAKNRE--GEAKMDIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGG-EPS--PKVEW  147 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~--~~~~~~~~v~v~~~~~~~p~i~-~~~~~~~~~~G~~v~l~C~~~g-~p~--~~v~W  147 (785)
                      |+|.+++.+|+|.|.|.+.+..  ........|.|......+|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.|
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W  160 (221)
T 3m8o_H           83 LQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTW  160 (221)
T ss_dssp             EEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEE
Confidence            9999999999999999999864  1222334566754444566665 232222  78999999999987 665  48999


Q ss_pred             eECCEEcccce---EE-EeCC----EEEEEEcccCCCCcEEEEEEEEcCCee
Q psy2775         148 YKDGKLIKDRQ---IT-SEKN----THTLTLIQCSTKDKGRYSVKVTNKEGT  191 (785)
Q Consensus       148 ~~~g~~~~~~~---~~-~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~  191 (785)
                      +++|..+....   .. ..++    .+.|.|.....+|+|.|+|.|.|..+.
T Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          161 SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             SCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            99997763211   11 1111    236899999999999999999998754

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.71  E-value=1.5e-16  Score=154.11  Aligned_cols=177  Identities=13%  Similarity=0.125  Sum_probs=114.5

Q ss_pred             CCCeEEecCCcEEEEEEEeCC---CceEEEEECC--EEc------c-----------cCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTKG---DALVKWYKDG--KEI------A-----------FSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~~------~-----------~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +....+.+|++++|.|.+.+.   .+.+.|+|++  ..+      .           ...++.+..+  .....|+|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            345678899999999999873   5789999853  211      0           1346666554  35678999999


Q ss_pred             CCCCcEEEEEEEeecCc--ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCC
Q psy2775         478 GLEDAGEYSCRVGDTGD--KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP  555 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~g~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~  555 (785)
                      +.+|+|.|.|.+.|...  ....+.|.|...+.    .                                          
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~----~------------------------------------------  120 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKT----T------------------------------------------  120 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCC----B------------------------------------------
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCC----C------------------------------------------
Confidence            99999999999998521  12345677765210    0                                          


Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeC---CeEEEEEccCCCCCCceeE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG---ENIILELKEADSETDAGDY  630 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y  630 (785)
                        +|.+........+.+|+.++|.|.+.|. |.| .|.|+|++..+...........+   ..+.|.|..+.. +| |.|
T Consensus       121 --~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~Y  196 (227)
T 1mju_H          121 --APSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSI  196 (227)
T ss_dssp             --CCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TT-SCC
T ss_pred             --CCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhc-CC-CeE
Confidence              1333222112346789999999999986 877 99999998764211000111111   234799999887 78 999


Q ss_pred             EEEEEcCCcceEEEEEEE
Q psy2775         631 KVVATNELGSATHGARVT  648 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~  648 (785)
                      +|.|.|..+.......+.
T Consensus       197 ~C~a~n~~~~~~~~~~~~  214 (227)
T 1mju_H          197 TCNVAHPASSTKVDKKIE  214 (227)
T ss_dssp             EEEEEEGGGTEEEEEECC
T ss_pred             EEEEEECCCCcceEEEeC
Confidence            999999887765555444

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.70  E-value=2.3e-16  Score=157.29  Aligned_cols=191  Identities=15%  Similarity=0.187  Sum_probs=118.9

Q ss_pred             CcccccCCCeEEecCCcEEEEEEEeCC------CceEEEEECC--EE---cc---------cCCCEEEEEeCcEEEEEEc
Q psy2775         416 PEISVPLQDVKVSRDEKASFEIELTKG------DALVKWYKDG--KE---IA---------FSENVTLSIDGKKQKLIIF  475 (785)
Q Consensus       416 ~~~~~~~~~~~v~~g~~~~l~C~~~~~------~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~L~i~  475 (785)
                      +.+...+..+.+.+|++++|.|.+.+.      .+.+.|+|+.  ..   +.         ...++.+...+....|+|.
T Consensus        16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   95 (268)
T 1x9q_A           16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKIN   95 (268)
T ss_dssp             CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEEC
Confidence            344445566778899999999999874      3789999853  21   11         1356666666667899999


Q ss_pred             cCCCCCcEEEEEEEeec-Cc-ceeEEEEEEEcCcccccc-cCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         476 SAGLEDAGEYSCRVGDT-GD-KESKATLTVEAPAVEFLT-KLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~-g~-~~~~~~l~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      +++.+|+|.|.|.|.|. +. ......|.|..++..... ..|.....           +..+.                
T Consensus        96 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~-----------~~~~~----------------  148 (268)
T 1x9q_A           96 RVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAK-----------KDDAK----------------  148 (268)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEC---------------------------------------------------
T ss_pred             CCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCcccccccccc-----------ccccc----------------
Confidence            99999999999999986 32 233466777654311000 00000000           00000                


Q ss_pred             CCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCC--CceEEEeCC--EEe---c----------------CCCCeeEEe
Q psy2775         553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNN--KPL---L----------------SSPKKREIF  609 (785)
Q Consensus       553 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~~--~~i---~----------------~~~~~~~~~  609 (785)
                         .....++..+....+.+|++++|.|.+.|.|+  +.+.|||++  ..+   .                ...++....
T Consensus       149 ---~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~  225 (268)
T 1x9q_A          149 ---KDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISR  225 (268)
T ss_dssp             ---CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEE
T ss_pred             ---cccceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEE
Confidence               00001233344668999999999999999874  789999852  221   0                123333333


Q ss_pred             e--CCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         610 D--GENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       610 ~--~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      +  ....+|+|.+++. +|+|.|.|.|.|.
T Consensus       226 ~~~~~~~~L~I~~v~~-~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          226 DDSKSSVYLQMNNLRV-EDTGIYYCTGASY  254 (268)
T ss_dssp             EGGGTEEEEEECSCCG-GGCEEEEEEEEET
T ss_pred             eCCCCEEEEEECCCCH-HHCEEEEEEEccC
Confidence            2  2357899999999 9999999999985

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.70  E-value=1.6e-16  Score=156.67  Aligned_cols=182  Identities=11%  Similarity=0.139  Sum_probs=120.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEec--CCCeeEEEECCE-----Ec--------------cCCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGE-----PL--------------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.+.+|++++|.|.+.+.  +...+.||+...     .+              ...+|+.+..+..  ....+|+
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~   82 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNA--KNTLFLQ   82 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGG--GTEEEEE
T ss_pred             EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCC--CCEEEEE
Confidence            34668999999999999999773  356899998431     11              0113444433221  1235699


Q ss_pred             EcccCCCCCeEEEEEEEcCC----eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cCCC-eEEEeE
Q psy2775          76 IKSIKKREEGVYTVVAKNRE----GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYK  149 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~----~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~-~v~W~~  149 (785)
                      |.+++.+|+|.|.|.+.+..    ........|.|......+|.+........+..|+.+.|.|.+.| .|.+ .+.|++
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           83 MSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             ECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             ECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            99999999999999998752    22233456777644456677764444445667999999999987 6656 899999


Q ss_pred             CCEEcccce---EEEe---CCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         150 DGKLIKDRQ---ITSE---KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       150 ~g~~~~~~~---~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      +|..+....   ....   ...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       163 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            987432110   1111   112578999999999 99999999998876665555543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.70  E-value=2e-16  Score=154.92  Aligned_cols=178  Identities=13%  Similarity=0.126  Sum_probs=120.7

Q ss_pred             cccccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--------------CEEcc---cCCCEEEEEe-CcEEEEEEccCC
Q psy2775         417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKD--------------GKEIA---FSENVTLSID-GKKQKLIIFSAG  478 (785)
Q Consensus       417 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--------------~~~~~---~~~~~~~~~~-~~~~~L~i~~~~  478 (785)
                      .+..++..+.+.+|++++|.|.+.++.+.+.|+|.              +....   ...++.+..+ .....|+|.+++
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   83 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   83 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence            34455667889999999999999888889999982              22111   1245665543 346789999999


Q ss_pred             CCCcEEEEEEEeec----CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         479 LEDAGEYSCRVGDT----GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~----g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      .+|+|.|+|.|.+.    ........|.|......                                             
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~---------------------------------------------  118 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRN---------------------------------------------  118 (240)
T ss_dssp             GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGG---------------------------------------------
T ss_pred             hhHCEEEEEEEccCCCcceEEcCCEEEEEeccccC---------------------------------------------
Confidence            99999999999832    22334456777642100                                             


Q ss_pred             CCCCCeEe-eeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCCCCee---EEeeCCe----EEEEEccCCCC
Q psy2775         555 PGQAPLFI-ERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKR---EIFDGEN----IILELKEADSE  624 (785)
Q Consensus       555 ~~~~p~~~-~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~~~~~---~~~~~~~----~~L~i~~~~~~  624 (785)
                       ..+|.+. ..+....+.+|+.++|.|.+.| .|.| .|.|+|+|..+..+....   ....++.    +.|.|..... 
T Consensus       119 -~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-  196 (240)
T 3q5y_A          119 -VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFW-  196 (240)
T ss_dssp             -CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHH-
T ss_pred             -CCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHh-
Confidence             0013322 2233445677999999999999 5766 799999999986543221   1222333    2489998887 


Q ss_pred             CC-ceeEEEEEEcCCcce
Q psy2775         625 TD-AGDYKVVATNELGSA  641 (785)
Q Consensus       625 ~d-~G~Y~C~a~n~~g~~  641 (785)
                      +| .|.|+|.|.|.....
T Consensus       197 ~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          197 HNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             SCTTCEEEEEEEECCBCT
T ss_pred             ccCCCEEEEEEEcCCCCC
Confidence            77 679999999986543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.70  E-value=1.4e-16  Score=154.12  Aligned_cols=170  Identities=14%  Similarity=0.156  Sum_probs=114.8

Q ss_pred             CCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EEcc-----------------cCCCEEEEEe--CcEEEEEEccCC
Q psy2775         423 QDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KEIA-----------------FSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      ....+.+|++++|.|.+.+ +  .+.+.|+|..  ..+.                 ...++.+..+  .....|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            4567889999999999987 3  5789999853  2110                 1346666654  346789999999


Q ss_pred             CCCcEEEEEEEeec-C-----c---ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccc
Q psy2775         479 LEDAGEYSCRVGDT-G-----D---KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT  549 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g-----~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  549 (785)
                      .+|+|.|.|.+.|. |     .   ....+.|.|...+.    .                                    
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~----~------------------------------------  127 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST----K------------------------------------  127 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC----B------------------------------------
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC----c------------------------------------
Confidence            99999999999986 3     1   11345777775210    0                                    


Q ss_pred             cCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCC----eEEEEEccCCC
Q psy2775         550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADS  623 (785)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~----~~~L~i~~~~~  623 (785)
                              +|.+........+.+|+.++|.|.+.|. |.| .|.|+|++..+...........++    .+.|.|..+..
T Consensus       128 --------~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~  199 (225)
T 1op3_H          128 --------GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL  199 (225)
T ss_dssp             --------CCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGT
T ss_pred             --------CCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhc
Confidence                    1322221111235689999999999987 877 999999987642110001111222    24689999887


Q ss_pred             CCCceeEEEEEEcCCcceE
Q psy2775         624 ETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~~g~~~  642 (785)
                       +| |.|+|.|.|..+...
T Consensus       200 -~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          200 -GT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             -TC-CCCCEEEEEGGGTEE
T ss_pred             -CC-CcEEEEEEcCCCCcc
Confidence             78 999999999877544

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.70  E-value=1.9e-15  Score=140.66  Aligned_cols=157  Identities=16%  Similarity=0.164  Sum_probs=116.4

Q ss_pred             ceEeccCCcEEEEEEEeccCCC--eEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775         122 DVSITEGESAVLSVQVGGEPSP--KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN  199 (785)
Q Consensus       122 ~~~~~~G~~v~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  199 (785)
                      .+.+..|+++.|.|.+ +.|.+  .|+|++.+..+  ...........|.|.+++.+|.|.|.|.|.|..+.....+.|+
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~lt   92 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL   92 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEE
Confidence            3688899999999999 88877  99999965444  2333346677899999999999999999999999888889999


Q ss_pred             eecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccC-CC----CeEEEEECCE
Q psy2775         200 VDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS----PKVEWYKDGK  274 (785)
Q Consensus       200 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~----~~v~W~~~~~  274 (785)
                      |...|                                ....... ..+.+|+.. |.|.+.+. |.    ++|+|+|++.
T Consensus        93 V~~~P--------------------------------~~~~i~~-~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~  138 (210)
T 1gsm_A           93 VYAFP--------------------------------NQLTVSP-AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQ  138 (210)
T ss_dssp             EEBCC--------------------------------SEEEEES-SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTE
T ss_pred             EEecC--------------------------------CCcEEcc-ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCE
Confidence            98442                                2222111 256678888 99999875 64    3899999999


Q ss_pred             EcccceE----E-E--------eCC----EEEEEEccCCCCCCeEEEEEEEeCCCceE
Q psy2775         275 LIKDRQI----T-S--------EKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVE  315 (785)
Q Consensus       275 ~l~~~~~----~-~--------~~~----~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~  315 (785)
                      .|.....    . .        ...    .++|.+.....+|.+.|+|.|.+..-...
T Consensus       139 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          139 ELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             ECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             EcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence            9963322    1 0        011    23455567777888999999998754443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.70  E-value=3.2e-16  Score=157.98  Aligned_cols=191  Identities=13%  Similarity=0.162  Sum_probs=122.8

Q ss_pred             CCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EEc-----------------ccCCCEEEEEe--CcEEEEEEccCC
Q psy2775         423 QDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KEI-----------------AFSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      ....+.+|++++|.|.+.+ +  .+.+.|+|+.  ..+                 ....++.+..+  +....|+|.+++
T Consensus        30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  109 (291)
T 2gki_A           30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT  109 (291)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC
T ss_pred             CcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC
Confidence            3567889999999999987 3  4689999953  111                 01245555443  346789999999


Q ss_pred             CCCcEEEEEEEeecC--cce----eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         479 LEDAGEYSCRVGDTG--DKE----SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~g--~~~----~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      .+|+|.|.|.+.|..  ...    ..+.|.|..+.. .........                                  
T Consensus       110 ~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~-~~~~~~~~~----------------------------------  154 (291)
T 2gki_A          110 SEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGG-GGSGGGGSG----------------------------------  154 (291)
T ss_dssp             GGGCEEEEEEEECGGGTTCEEEECCCEEEEECC-----------------------------------------------
T ss_pred             HHHCEEEEEEEeccccccccceeCCCcEEEEecCCc-cccccccCC----------------------------------
Confidence            999999999999852  111    234666654100 000000000                                  


Q ss_pred             CCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC------ceEEEeCC--EE---ec---------CCCCeeEEeeCC
Q psy2775         553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP------SIVWFRNN--KP---LL---------SSPKKREIFDGE  612 (785)
Q Consensus       553 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p------~v~W~~~~--~~---i~---------~~~~~~~~~~~~  612 (785)
                       ....++.+...+....+.+|++++|.|.+.|.|.+      .+.|||++  ..   +.         ...++.....+.
T Consensus       155 -~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~  233 (291)
T 2gki_A          155 -GGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGT  233 (291)
T ss_dssp             -----CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT
T ss_pred             -CCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCC
Confidence             00001334444556789999999999999999876      89999963  21   11         023444444566


Q ss_pred             eEEEEEccCCCCCCceeEEEEEEcCCcceEEE-EEEEEE
Q psy2775         613 NIILELKEADSETDAGDYKVVATNELGSATHG-ARVTVD  650 (785)
Q Consensus       613 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~  650 (785)
                      .++|+|.+++. +|+|.|+|.|.|.....-.. ..|.|+
T Consensus       234 ~~~L~I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l~v~  271 (291)
T 2gki_A          234 DFTLTISSVQA-EDLAVYYCKQSYYHMYTFGSGTKLEIK  271 (291)
T ss_dssp             EEEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEECCCCH-HHCEEEEEEEccCCceEEcCCEEEEEE
Confidence            77899999999 99999999999965433322 345554

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.70  E-value=5.4e-18  Score=161.69  Aligned_cols=174  Identities=16%  Similarity=0.215  Sum_probs=108.0

Q ss_pred             eEeeeeeeee-eeecCeEEEEEEEecCC---C-CceEEEeCCEEecCCCC-eeEEeeC----CeEEEEEccCCCCCCcee
Q psy2775         560 LFIERFEEKT-VKEKGTIRLMAKVKASP---A-PSIVWFRNNKPLLSSPK-KREIFDG----ENIILELKEADSETDAGD  629 (785)
Q Consensus       560 ~~~~~~~~~~-v~~g~~v~l~C~~~g~P---~-p~v~W~~~~~~i~~~~~-~~~~~~~----~~~~L~i~~~~~~~d~G~  629 (785)
                      .++..+.... +.+|++++|.|.+.|.|   . +.|.|+|++..+..... ....+.+    ....|.|.+++. +|+|.
T Consensus         4 v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~   82 (207)
T 2vol_A            4 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDW-LNGKE   82 (207)
T ss_dssp             EEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHH-HTTCC
T ss_pred             EEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHc-CCCCE
Confidence            3444444444 89999999999999985   3 38999999987753210 0001111    235799999999 99999


Q ss_pred             EEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecC
Q psy2775         630 YKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKG  709 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g  709 (785)
                      |+|.|.|..|....+..+.+.                                     ..+..+|.+........ ...|
T Consensus        83 Y~C~a~~~~~~~~~~~~v~~~-------------------------------------~~~~~~P~v~~~~~~~~-~~~g  124 (207)
T 2vol_A           83 FKCRVNSAAFPAPIEKTISKT-------------------------------------KGRPKAPQVYTLPPPKE-QMAK  124 (207)
T ss_dssp             EEEEEECTTCSSCEEEEECCC-------------------------------------CCCCBCCEEEEECCCTG-GGSS
T ss_pred             EEEEEEccCCCCceEEEeccC-------------------------------------CCCCcCCeEEEeCCCHH-HhcC
Confidence            999999998864322222210                                     01224455432222111 2359


Q ss_pred             CeEEEEEEEecC-CCC-ceEEeECCEEeeecccccc--chh--h--hcccccceeeeeeceEEEEEEeccc
Q psy2775         710 EDLKIEVRFKAL-PPP-KAEWTVNGTVIVPSKRVKG--KAE--F--IKKLDDLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       710 ~~~~l~C~~~g~-P~p-~i~W~~~~~~~~~~~~~~~--~~~--~--~~~l~~~~v~~~~~~~~~c~~~~~~  772 (785)
                      +.++|.|.+.|+ |++ .|+|++||..+........  ..+  |  ...|.+......+.|.|+|.+.++.
T Consensus       125 ~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~  195 (207)
T 2vol_A          125 DKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG  195 (207)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTT
T ss_pred             CceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCC
Confidence            999999999995 553 8999999998865432211  111  1  1122222222235899999999854

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=152.57  Aligned_cols=181  Identities=14%  Similarity=0.173  Sum_probs=131.1

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccC--CCEEEEEeCcEEEEEEccCCCCCcEEEEEEEe
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFS--ENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG  490 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  490 (785)
                      .+|.+. .+....+.+|+.+.|.|.+.+ |.+.+.|+|+|..+...  .++.+...+....|.|.++..+|+|.|+|.|.
T Consensus        18 ~~P~~~-~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEEE-CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCccc-CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            356663 455678899999999999998 78899999999998766  46677766677899999999999999999999


Q ss_pred             ec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeee
Q psy2775         491 DT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKT  569 (785)
Q Consensus       491 n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~  569 (785)
                      |. |.....+.|.|..+|..                                                 |....     .
T Consensus        97 n~~g~~~~~~~l~v~~~P~~-------------------------------------------------p~~~~-----~  122 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSS-------------------------------------------------PSIDQ-----V  122 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCC-------------------------------------------------CEEEE-----E
T ss_pred             ECCCceEEEEEEEECCCCCC-------------------------------------------------CcceE-----E
Confidence            98 88888888888765421                                                 11111     1


Q ss_pred             eeecCeEEEEEEE----ecCCCC--ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         570 VKEKGTIRLMAKV----KASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       570 v~~g~~v~l~C~~----~g~P~p--~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      ...+..++|.|..    .|.|.+  .+.|.+++...................|.|.++.. .|.|.|+|.|.|..|....
T Consensus       123 ~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~-~~~y~~~~~A~N~~G~s~~  201 (215)
T 3mtr_A          123 EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP-ETTYAVRLAALNGKGLGEI  201 (215)
T ss_dssp             EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCT-TCEEEEEEEEEESSCBCCC
T ss_pred             EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCC-CCEEEEEEEEEeCCcccCc
Confidence            2345678888873    233444  47888877542111000000011125799999999 9999999999999998887


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      +..+.|.
T Consensus       202 S~~~~v~  208 (215)
T 3mtr_A          202 SAASEFK  208 (215)
T ss_dssp             CCCEEEE
T ss_pred             ccceeeE
Confidence            7777765

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.69  E-value=2.9e-16  Score=152.29  Aligned_cols=174  Identities=16%  Similarity=0.163  Sum_probs=114.4

Q ss_pred             CCeEEecCCcEEEEEEEeCCC-----ceEEEEEC--CEEcc----------------cCCCEEEEEeC--cEEEEEEccC
Q psy2775         423 QDVKVSRDEKASFEIELTKGD-----ALVKWYKD--GKEIA----------------FSENVTLSIDG--KKQKLIIFSA  477 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~~-----~~i~W~~~--~~~~~----------------~~~~~~~~~~~--~~~~L~i~~~  477 (785)
                      ....+.+|++++|.|.+.+.+     +.+.|+|.  +..+.                ...++.+..+.  ....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            456788999999999999732     78999984  22110                12456655542  3578999999


Q ss_pred             CCCCcEEEEEEEeec-C------c---ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccc
Q psy2775         478 GLEDAGEYSCRVGDT-G------D---KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIV  547 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~-g------~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  547 (785)
                      +.+|+|.|.|.+.|. |      .   ....+.|.|...+.                                       
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~---------------------------------------  128 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKT---------------------------------------  128 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCC---------------------------------------
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCC---------------------------------------
Confidence            999999999999986 3      1   11236677763210                                       


Q ss_pred             cccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeC---CeEEEEEccCC
Q psy2775         548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG---ENIILELKEAD  622 (785)
Q Consensus       548 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~---~~~~L~i~~~~  622 (785)
                               .+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+.......+...+   ....|.|..+.
T Consensus       129 ---------~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~  199 (228)
T 3bae_H          129 ---------TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSST  199 (228)
T ss_dssp             ---------BCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTT
T ss_pred             ---------CCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhh
Confidence                     01333322222346789999999999987 888 99999998754211111111111   13468999887


Q ss_pred             CCCCceeEEEEEEcCCcceEEEEE
Q psy2775         623 SETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      . +| |.|+|.|.|..|.......
T Consensus       200 ~-d~-g~YtC~~~n~~~~~~~~~~  221 (228)
T 3bae_H          200 W-PS-ESITCNVAHPASSTKVDKK  221 (228)
T ss_dssp             T-TT-SCCEEEEEEGGGTEEEEEE
T ss_pred             c-CC-CcEEEEEEECCCCCCEEEE
Confidence            7 66 9999999999997765444

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.69  E-value=1.9e-16  Score=152.06  Aligned_cols=174  Identities=13%  Similarity=0.215  Sum_probs=113.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEcc----------------CCCCEEEeecCCccceEEEEEEc
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPLQ----------------ETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .|..+.+.+|++++|.|.+.+.+  .+.+.|++++  ..+.                ...++.+..+..  ....+|+|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~   83 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS--KSQVFLKMN   83 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT--TTEEEEEES
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC--CceEEEEEC
Confidence            46778999999999999998764  4789999863  1110                113444433221  123569999


Q ss_pred             ccCCCCCeEEEEEEEcCCee---EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeECCE
Q psy2775          78 SIKKREEGVYTVVAKNREGE---AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGK  152 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~~---~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~~g~  152 (785)
                      +++.+|+|.|.|.+.+..+.   ......|.|....+.+|.+........+..|+.+.|.|.+.|. |.+ .|.|+++|.
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  163 (215)
T 1c5d_H           84 SLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGAL  163 (215)
T ss_dssp             SCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTT
T ss_pred             CCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCc
Confidence            99999999999999986421   1123567776444456666543323345789999999999886 777 999999986


Q ss_pred             Ecccc--eEEEeCCEEEE--EEcccCCCCcEEEEEEEEcCCeeEEE
Q psy2775         153 LIKDR--QITSEKNTHTL--TLIQCSTKDKGRYSVKVTNKEGTVES  194 (785)
Q Consensus       153 ~~~~~--~~~~~~~~~~L--~i~~~~~~d~G~Y~C~a~n~~g~~~~  194 (785)
                      .+...  ......+...+  .+.....+| |.|+|.|.|..+....
T Consensus       164 ~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          164 SSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             CCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             cCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            54311  11112232222  123444456 9999999998876543

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.69  E-value=2.5e-16  Score=154.26  Aligned_cols=184  Identities=13%  Similarity=0.147  Sum_probs=121.4

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECC--EE---cc--------------CCCCEEEeecCCccce
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG--EP---LQ--------------ETDEVVFSDQSDMHSY   70 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~   70 (785)
                      ++.+...|..+.+.+|++++|.|.+.+.  +.+.+.|+|+.  ..   +.              ...|+.+..+..  ..
T Consensus         1 ~~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~   78 (242)
T 1hxm_B            1 AGHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPE--TS   78 (242)
T ss_dssp             CCEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETT--TT
T ss_pred             CCccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCC--Cc
Confidence            3567778899999999999999999875  56789999853  11   10              223444433221  12


Q ss_pred             EEEEEEcccCCCCCeEEEEEEEcCCe-----e--EEEEeeEEEeCCCC-----CCCceecCCCceEeccCCcEEEEEEEe
Q psy2775          71 VSIVTIKSIKKREEGVYTVVAKNREG-----E--AKMDIPVKVNTGKP-----EKPSILEPLHDVSITEGESAVLSVQVG  138 (785)
Q Consensus        71 ~~~L~i~~~~~~D~G~Y~C~a~~~~~-----~--~~~~~~v~v~~~~~-----~~p~i~~~~~~~~~~~G~~v~l~C~~~  138 (785)
                      ..+|+|.+++.+|+|.|.|.+.+...     .  ......|.|.....     ..|.+.. +....+..|+.+.|.|.+.
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~  157 (242)
T 1hxm_B           79 TSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLE  157 (242)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEE
T ss_pred             EEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEe
Confidence            35799999999999999999987531     1  11235677764211     1222322 3334566799999999998


Q ss_pred             cc-CC-CeEEEeECCE-Ecccce---EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         139 GE-PS-PKVEWYKDGK-LIKDRQ---ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       139 g~-p~-~~v~W~~~g~-~~~~~~---~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      |. |. +.|.|+++|. .+....   ....++    ...|.|.+... | |.|+|.|.|..+.......+.+
T Consensus       158 g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          158 KFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             eEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            86 64 6999999987 553321   111222    24688887664 4 9999999998875443444443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.69  E-value=7.8e-17  Score=158.50  Aligned_cols=177  Identities=14%  Similarity=0.131  Sum_probs=115.8

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe--------------CCEEecCC----CCeeEEee-CCeEEEEEc
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--------------NNKPLLSS----PKKREIFD-GENIILELK  619 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~--------------~~~~i~~~----~~~~~~~~-~~~~~L~i~  619 (785)
                      +.+...+..+.+.+|++++|.| ..+.|.+.|.|||              ++..+...    .++..... ...++|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            4455666788999999999999 7788999999999              23222221    44444332 346789999


Q ss_pred             cCCCCCCceeEEEEEEcC----CcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCC
Q psy2775         620 EADSETDAGDYKVVATNE----LGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPV  695 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~  695 (785)
                      +++. +|+|.|.|.|.+.    .+.....+.|.|...                                   .....+|.
T Consensus        82 ~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~~~~p~  125 (245)
T 4ei6_B           82 PTAL-EDSAVYFCASSFWGAYAEQFFGPGTRLTVLED-----------------------------------LKNVFPPE  125 (245)
T ss_dssp             SCCG-GGCEEEEEEEECSSTTCCCEECCCEEEEEESC-----------------------------------GGGCBCCE
T ss_pred             CCCH-hHCEEEEEEEccCCCcceEEEcCCcEEEEecc-----------------------------------cCCCCCce
Confidence            9999 9999999999963    223333455666410                                   00113444


Q ss_pred             cCCCCCCcEEeecCCeEEEEEEEec-CCCC-ceEEeECCEEeeeccccccch------------hhhcccccceeeeee-
Q psy2775         696 IDPPPPPEVLVKKGEDLKIEVRFKA-LPPP-KAEWTVNGTVIVPSKRVKGKA------------EFIKKLDDLEVKERE-  760 (785)
Q Consensus       696 i~~~~~~~~~~~~g~~~~l~C~~~g-~P~p-~i~W~~~~~~~~~~~~~~~~~------------~~~~~l~~~~v~~~~-  760 (785)
                      +....+....+..|+.++|.|.+.| .|+| .|.|++||..+..+.+.....            .....|.+......| 
T Consensus       126 ~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~  205 (245)
T 4ei6_B          126 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNP  205 (245)
T ss_dssp             EEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCT
T ss_pred             EEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccC
Confidence            4322333334567999999999999 4555 899999999998765432211            111234444444455 


Q ss_pred             ceEEEEEEeccc
Q psy2775         761 NAVLEVEVTSDK  772 (785)
Q Consensus       761 ~~~~~c~~~~~~  772 (785)
                      .+.|+|.|.++.
T Consensus       206 ~g~ytC~v~~~~  217 (245)
T 4ei6_B          206 RNHFRCQVQFYG  217 (245)
T ss_dssp             TCEEEEEEEECC
T ss_pred             CCeEEEEEEECC
Confidence            899999998743

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.69  E-value=2.1e-16  Score=129.72  Aligned_cols=94  Identities=19%  Similarity=0.491  Sum_probs=82.7

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +.||+|...|.++.+.+|++++|.|.+.|.|.|.|.|++++..+....  ++.+...++.    ++|+|.+++.+|+|.|
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y   78 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL----TTLIIMDVQKQDGGLY   78 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSE----EEEEESSCCGGGCEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccce----EEEEEcCCCccCCEEE
Confidence            468999999999999999999999999999999999999999987654  4555554432    5699999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEe
Q psy2775          88 TVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +|.|.|..|.....+.|.|.
T Consensus        79 ~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           79 TLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            99999999999988888885

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.69  E-value=3.5e-16  Score=156.75  Aligned_cols=186  Identities=16%  Similarity=0.221  Sum_probs=123.7

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECCE--Ec------c-----------CCCCEEEeecCCccceE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGE--PL------Q-----------ETDEVVFSDQSDMHSYV   71 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~--~~------~-----------~~~~~~~~~~~~~~~~~   71 (785)
                      +.+.. |..+.+.+|++|+|.|.+.+.  +.+.+.||+...  ..      .           ...++.+..+...  ..
T Consensus         2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~   78 (280)
T 3fku_X            2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQST--RT   78 (280)
T ss_dssp             CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTT--TE
T ss_pred             CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCC--CE
Confidence            44566 888999999999999999775  557899997431  10      0           0123333322211  22


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcC---------CeeEEEEeeEEEeCCC-----------CCCCceecCCCceEeccCCcE
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKNR---------EGEAKMDIPVKVNTGK-----------PEKPSILEPLHDVSITEGESA  131 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~~---------~~~~~~~~~v~v~~~~-----------~~~p~i~~~~~~~~~~~G~~v  131 (785)
                      .+|+|.+++.+|+|.|.|.+.+.         .........|.|....           ..+|.+...+. ..+.+|+++
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v  157 (280)
T 3fku_X           79 AYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTA  157 (280)
T ss_dssp             EEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCE
Confidence            56999999999999999999986         1222234456665301           12555666655 889999999


Q ss_pred             EEEEEEec-cC-CCeEEEeEC--CEEcc-------------cc--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCC--e
Q psy2775         132 VLSVQVGG-EP-SPKVEWYKD--GKLIK-------------DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE--G  190 (785)
Q Consensus       132 ~l~C~~~g-~p-~~~v~W~~~--g~~~~-------------~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--g  190 (785)
                      +|.|.+.+ .+ .+.+.|||.  +..+.             ..  .........+|+|.+++.+|+|.|.|.+.+..  .
T Consensus       158 ~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~  237 (280)
T 3fku_X          158 TLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSA  237 (280)
T ss_dssp             EEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTE
T ss_pred             EEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCc
Confidence            99999987 43 478999982  22211             01  12234456789999999999999999999876  2


Q ss_pred             e-EEEEEEEEeec
Q psy2775         191 T-VESAANLNVDP  202 (785)
Q Consensus       191 ~-~~~~~~l~V~~  202 (785)
                      . ....+.|.|..
T Consensus       238 ~~~g~~t~l~V~~  250 (280)
T 3fku_X          238 VVFGGGTKLTVLG  250 (280)
T ss_dssp             EEEBCCCEEEEC-
T ss_pred             eEECCCEEEEECC
Confidence            1 22335666653

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.68  E-value=1.2e-16  Score=156.95  Aligned_cols=174  Identities=14%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c---c-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L---Q-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.||++.  ..   +   .           ...|+.+..+..  .....|+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~   82 (257)
T 3bn9_D            5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNS--KNTLYLQ   82 (257)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETT--TTEEEEE
T ss_pred             EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCC--CCEEEEE
Confidence            345678999999999999998765  5789999853  11   1   0           123444433211  1235699


Q ss_pred             EcccCCCCCeEEEEEEEcCCe----------e---EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-C
Q psy2775          76 IKSIKKREEGVYTVVAKNREG----------E---AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-P  141 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~~----------~---~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p  141 (785)
                      |.+++.+|+|.|.|.+.+..+          .   ......|.|....+.+|.+........+..|+.++|.|.+.|. |
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           83 MSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             EESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBS
T ss_pred             ECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence            999999999999999998754          1   1123467776434456766543333346789999999999885 7


Q ss_pred             CC-eEEEeECCEEcccc---eEEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEE
Q psy2775         142 SP-KVEWYKDGKLIKDR---QITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVE  193 (785)
Q Consensus       142 ~~-~v~W~~~g~~~~~~---~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  193 (785)
                      .+ .|+|+++|..+...   .....++    ...|.|.+...+| |.|+|.|.|......
T Consensus       163 ~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          163 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             SCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             CCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            66 99999998764321   1111122    2457888877778 999999999765433

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.68  E-value=4.9e-17  Score=162.34  Aligned_cols=184  Identities=14%  Similarity=0.166  Sum_probs=117.8

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CE------------EecCC----CCeeEEe-eCCeEEEEEc
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK------------PLLSS----PKKREIF-DGENIILELK  619 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~------------~i~~~----~~~~~~~-~~~~~~L~i~  619 (785)
                      +.+...+....+.+|++++|.|.+. .|.+.+.|||.  +.            .....    .++.... ....++|+|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            5556666778999999999999987 67889999992  21            11111    3443333 2346789999


Q ss_pred             cCCCCCCceeEEEEEEcC--CcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcC
Q psy2775         620 EADSETDAGDYKVVATNE--LGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVID  697 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~  697 (785)
                      +++. +|+|.|.|.|.|.  .+.......|.|...                                   +....+|.+.
T Consensus       106 ~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~~~~P~v~  149 (268)
T 3pl6_D          106 RTER-GDSAVYLCATSALGDTQYFGPGTRLTVLED-----------------------------------LKNVFPPEVA  149 (268)
T ss_dssp             SCCG-GGCEEEEEEEESSSSSCEECCCEEEEEESC-----------------------------------GGGCBCCEEE
T ss_pred             CCCc-ccCEEEEEEEecCCCceeeCCcEEEEEecC-----------------------------------cccccCCceE
Confidence            9999 9999999999984  333333455666520                                   0011345443


Q ss_pred             CCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECCEEeeeccccccc------------hhhhcccccceeeeee-ce
Q psy2775         698 PPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNGTVIVPSKRVKGK------------AEFIKKLDDLEVKERE-NA  762 (785)
Q Consensus       698 ~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~~~~~~~~~------------~~~~~~l~~~~v~~~~-~~  762 (785)
                      ...+....+..|+.++|.|.+.|.|++  .|+|++||..+..+.+....            ......|.+......| .|
T Consensus       150 ~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g  229 (268)
T 3pl6_D          150 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRN  229 (268)
T ss_dssp             EECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTC
T ss_pred             EeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCC
Confidence            323333446679999999999996654  89999999999765433210            0111233333333344 89


Q ss_pred             EEEEEEeccc--ceeEEee
Q psy2775         763 VLEVEVTSDK--ADVKWFK  779 (785)
Q Consensus       763 ~~~c~~~~~~--~~~~w~~  779 (785)
                      .|+|.|.++.  .+..|..
T Consensus       230 ~YtC~v~~~~l~~~~~~~~  248 (268)
T 3pl6_D          230 HFRCQVQFYGLSENDEWTQ  248 (268)
T ss_dssp             EEEEEEEECCBCTTSCCCS
T ss_pred             EEEEEEEcCCCCCCccccC
Confidence            9999998743  2345543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.68  E-value=4.3e-16  Score=156.11  Aligned_cols=189  Identities=15%  Similarity=0.172  Sum_probs=122.1

Q ss_pred             CCCeEEecCCcEEEEEEEeC---CCceEEEEECC--EEc-----------------ccCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTK---GDALVKWYKDG--KEI-----------------AFSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +....+.+|++++|.|.+.+   +.+.+.|++..  ...                 ....++.+..+  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            56678899999999999987   35679999742  110                 01235555533  34678999999


Q ss_pred             CCCCcEEEEEEEeec----------CcceeEEEEEEEc-CcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccc
Q psy2775         478 GLEDAGEYSCRVGDT----------GDKESKATLTVEA-PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI  546 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~----------g~~~~~~~l~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  546 (785)
                      +.+|+|.|.|.+.|.          ........|.|.. ++... .                                  
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~-~----------------------------------  131 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSG-G----------------------------------  131 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC------------------------------------------
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccC-C----------------------------------
Confidence            999999999999984          1122345566654 11000 0                                  


Q ss_pred             ccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEec-CC-CCceEEEeC--CEEec------------CCCCeeEEee
Q psy2775         547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SP-APSIVWFRN--NKPLL------------SSPKKREIFD  610 (785)
Q Consensus       547 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P-~p~v~W~~~--~~~i~------------~~~~~~~~~~  610 (785)
                         +.......+|.+...+. ..+.+|++++|.|.+.+ .+ .+.+.|||.  +..+.            ...++.....
T Consensus       132 ---~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~  207 (280)
T 3fku_X          132 ---GGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRS  207 (280)
T ss_dssp             ----------CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEE
T ss_pred             ---CCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEcc
Confidence               00000001234444444 78999999999999998 44 379999983  22211            1234555556


Q ss_pred             CCeEEEEEccCCCCCCceeEEEEEEcCCcc---eEEEEEEEEE
Q psy2775         611 GENIILELKEADSETDAGDYKVVATNELGS---ATHGARVTVD  650 (785)
Q Consensus       611 ~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~---~~~~~~l~V~  650 (785)
                      +..++|+|.+++. +|+|.|.|.|.|..+.   ....+.|.|.
T Consensus       208 ~~~~~L~I~~v~~-~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~  249 (280)
T 3fku_X          208 GNTASLTITGLQP-EDEADYYCSTWDSSLSAVVFGGGTKLTVL  249 (280)
T ss_dssp             TTEEEEEECSCCG-GGCSEEEEEEEETTTTEEEEBCCCEEEEC
T ss_pred             CCEEEEEECCCCH-HHCEEEEEEEecCCCCceEECCCEEEEEC
Confidence            6778899999999 9999999999998632   1122455554

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.67  E-value=4.5e-16  Score=156.07  Aligned_cols=177  Identities=16%  Similarity=0.242  Sum_probs=122.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--E---c----c----------CCCCEEEeecCCccceE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--P---L----Q----------ETDEVVFSDQSDMHSYV   71 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~---~----~----------~~~~~~~~~~~~~~~~~   71 (785)
                      ..+.+...|..+.+.+|++++|.|.+.+.+.+.+.|++++.  .   +    .          ...++.+..+.   ...
T Consensus        23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~   99 (279)
T 2wbj_D           23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS---LTL   99 (279)
T ss_dssp             CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECS---SSE
T ss_pred             ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCC---CCE
Confidence            35778888999999999999999999887888999998641  1   0    0          12344444321   123


Q ss_pred             EEEEEcccCCCCCeEEEEEEEcCCe------eEEEEeeEEEeCC--CCCCCceecC-CCceEeccCCcEEEEEEEecc-C
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKNREG------EAKMDIPVKVNTG--KPEKPSILEP-LHDVSITEGESAVLSVQVGGE-P  141 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~~~~------~~~~~~~v~v~~~--~~~~p~i~~~-~~~~~~~~G~~v~l~C~~~g~-p  141 (785)
                      .+|+|.+++.+|+|.|+|.+.+..+      .......|.|...  ...+|.+... +....+..|+.+.|.|.+.|. |
T Consensus       100 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  179 (279)
T 2wbj_D          100 STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  179 (279)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred             EEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence            5799999999999999999998321      1122345666532  1235655432 333445579999999999886 4


Q ss_pred             C-CeEEEeECCEEcccceEEE----------eCC----EEEEEEcccCCC-CcEEEEEEEEcCCe
Q psy2775         142 S-PKVEWYKDGKLIKDRQITS----------EKN----THTLTLIQCSTK-DKGRYSVKVTNKEG  190 (785)
Q Consensus       142 ~-~~v~W~~~g~~~~~~~~~~----------~~~----~~~L~i~~~~~~-d~G~Y~C~a~n~~g  190 (785)
                      + +.|+|++||..+.......          .++    ...|.|...... |.|.|+|.|.|...
T Consensus       180 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~  244 (279)
T 2wbj_D          180 DHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  244 (279)
T ss_dssp             SCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCB
T ss_pred             CCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCC
Confidence            3 6999999999886543211          122    234778777665 47889999998754

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.67  E-value=3e-17  Score=159.67  Aligned_cols=191  Identities=16%  Similarity=0.203  Sum_probs=112.8

Q ss_pred             cCCCCCCCCCeEeeeeeeee-eeecCeEEEEEEEecC---CCC-ceEEEeCCEEecCCCC-eeEEeeC----CeEEEEEc
Q psy2775         550 CPLGSPGQAPLFIERFEEKT-VKEKGTIRLMAKVKAS---PAP-SIVWFRNNKPLLSSPK-KREIFDG----ENIILELK  619 (785)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~~~-v~~g~~v~l~C~~~g~---P~p-~v~W~~~~~~i~~~~~-~~~~~~~----~~~~L~i~  619 (785)
                      |.......+..++.++.... +.+|++++|.|.+.|.   |.+ .|+|+|++..+..... ....+.+    ..+.|.|.
T Consensus         8 ~~~~~~~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~   87 (239)
T 1i1c_A            8 CGCTGSEVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIV   87 (239)
T ss_dssp             ---------CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECC
T ss_pred             CCCCCCcCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEE
Confidence            43333333344444444444 7899999999999987   877 8999999877643211 0111111    23579999


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCC
Q psy2775         620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPP  699 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~  699 (785)
                      +++. +|+|.|+|.|.|..|....+..+.+.                                     ..+..+|.+...
T Consensus        88 ~~~~-~D~g~Y~C~~~~~~~~~~~~~~v~~~-------------------------------------~~~~~~P~v~v~  129 (239)
T 1i1c_A           88 ERDW-LNGKTFKCKVNSGAFPAPIEKSISKP-------------------------------------EGTPRGPQVYTM  129 (239)
T ss_dssp             HHHH-HTTCCEEEEEECSSSSSCEEEEECCC-------------------------------------SSCCBCCEEEEE
T ss_pred             hhHc-cCCCeEEEEEecccCCCCcEEEEecC-------------------------------------CCCCcCCEEEEE
Confidence            9998 99999999999998864332222110                                     012244554332


Q ss_pred             CCCcEEeecCCeEEEEEEEecC-CCC-ceEEeECCEEeeecccccc--chh-hhcccccceeeee---eceEEEEEEecc
Q psy2775         700 PPPEVLVKKGEDLKIEVRFKAL-PPP-KAEWTVNGTVIVPSKRVKG--KAE-FIKKLDDLEVKER---ENAVLEVEVTSD  771 (785)
Q Consensus       700 ~~~~~~~~~g~~~~l~C~~~g~-P~p-~i~W~~~~~~~~~~~~~~~--~~~-~~~~l~~~~v~~~---~~~~~~c~~~~~  771 (785)
                      ..... ...|+.++|.|.+.|+ |++ .|+|++||..+........  ..+ .........+...   +.+.|+|.|.++
T Consensus       130 ~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~  208 (239)
T 1i1c_A          130 APPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE  208 (239)
T ss_dssp             CCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECC
Confidence            22211 2348899999999994 543 8999999998865432211  111 0111122334443   489999999974


Q ss_pred             c----ceeEEee
Q psy2775         772 K----ADVKWFK  779 (785)
Q Consensus       772 ~----~~~~w~~  779 (785)
                      .    ....|..
T Consensus       209 ~l~~~~~~~~~~  220 (239)
T 1i1c_A          209 GLENEHTEKSLS  220 (239)
T ss_dssp             TSGGGEEEEEEC
T ss_pred             CCCCCcEEEecc
Confidence            3    3566654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.67  E-value=4.8e-15  Score=137.67  Aligned_cols=235  Identities=17%  Similarity=0.310  Sum_probs=158.2

Q ss_pred             CCCceEeccCCcEEEEEEEe-ccC---CCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE
Q psy2775         119 PLHDVSITEGESAVLSVQVG-GEP---SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES  194 (785)
Q Consensus       119 ~~~~~~~~~G~~v~l~C~~~-g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  194 (785)
                      .+....+..|+.++|.|.+. |.|   +..++|+|||..+..       ....|.|..+...|+|.|+|.+.+..|....
T Consensus         8 ~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~t   80 (304)
T 3shs_A            8 QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATLTVADATSENAGSYKVTVQDTDTMTSV   80 (304)
T ss_dssp             EESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-------CSSEEEESSCCGGGCEEEEEEEEETTTCCEE
T ss_pred             CCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-------CcceEEeeeccccCCeEEEEEEEECCCCeee
Confidence            34566788999999999985 456   448999999988653       2337999999999999999999998876555


Q ss_pred             EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCee-eecCCcceeCCCCeEEEEEEE--c-cCC-----CC
Q psy2775         195 AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQV--G-GEP-----SP  265 (785)
Q Consensus       195 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~G~~~~l~C~~--~-g~p-----~~  265 (785)
                      +..+.|....                              .+.+ ...+....+..|..+.|.+.+  . |.|     ..
T Consensus        81 Ss~VtVT~~a------------------------------~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~y  130 (304)
T 3shs_A           81 ESEVFLMEEA------------------------------ELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYEL  130 (304)
T ss_dssp             ECCCEEECBC------------------------------CEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCC
T ss_pred             eeeEEEeccC------------------------------ceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCc
Confidence            4444444221                              0111 112334445567889999887  4 445     45


Q ss_pred             eEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce--EEEEEEEEeccccceeeeccceeEeeCcc
Q psy2775         266 KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV--ESAANLNVDQGKAEFIKKLDDLEVKEREN  343 (785)
Q Consensus       266 ~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~~~~~~~~~~~~~~~~~g~~  343 (785)
                      +++|++++..+.        +...|++......++|.|+|.++|..+..  +.++.+.+... ..-........+..|+.
T Consensus       131 TYQWyKngt~Is--------gAq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~-~v~~~~~~~~~~~~~~~  201 (304)
T 3shs_A          131 HYSWSKGEDVID--------TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATM-NVDQDVVESKTVALGNE  201 (304)
T ss_dssp             EEEEEETTEEEE--------SSSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEE-EEEECCCSEEEEETTSC
T ss_pred             eeEEeeCCeEcc--------CccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEcc-ccchhheEeehhhcCcE
Confidence            999999998764        22367888899999999999999987633  33345544431 11122234456777888


Q ss_pred             EEEEEEEc----C-----CC--CeEEEE--ECCEEcC---------CCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEe
Q psy2775         344 AVLEVEVT----S-----DK--ADVKWF--KDGQEIK---------TSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP  401 (785)
Q Consensus       344 ~~l~C~~~----~-----~~--~~v~W~--~~~~~l~---------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  401 (785)
                      +.|.-.+.    +     |.  .++.|+  ++|+.-+         .-..+.+..+|.   |.-.....+|...|.|.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH---LFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             EEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSC---EEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcc---eeecccccccchheeeHHH
Confidence            88765543    1     11  257787  3443221         112566777776   7778888999999999986


Q ss_pred             c
Q psy2775         402 D  402 (785)
Q Consensus       402 n  402 (785)
                      .
T Consensus       279 ~  279 (304)
T 3shs_A          279 L  279 (304)
T ss_dssp             E
T ss_pred             H
Confidence            3

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.67  E-value=1.9e-16  Score=157.13  Aligned_cols=187  Identities=14%  Similarity=0.183  Sum_probs=110.2

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEEC--CEE---ccc-C-------------CCEEEEE--eCcEEEE
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKD--GKE---IAF-S-------------ENVTLSI--DGKKQKL  472 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~--~~~---~~~-~-------------~~~~~~~--~~~~~~L  472 (785)
                      +|.+...+..+.+.+|++++|.|.+.+ +.+.+.|++.  +..   +.. .             .+.....  ......|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            345556677888999999999999987 5678999982  111   000 0             0111111  1234579


Q ss_pred             EEccCCCCCcEEEEEEEeec-C---cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775         473 IIFSAGLEDAGEYSCRVGDT-G---DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP  548 (785)
Q Consensus       473 ~i~~~~~~d~G~Y~C~a~n~-g---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  548 (785)
                      +|.+++.+|+|.|.|.|.|. +   .......|.|..+...-    +.....+                           
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~----~~~~~~~---------------------------  130 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSA----DDAKKDA---------------------------  130 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-------------------------------------------
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCc----ccccccc---------------------------
Confidence            99999999999999999986 4   23345677777642100    0000000                           


Q ss_pred             ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCCceEEEeCCE--Eec------------CCCCeeEE--eeC
Q psy2775         549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNK--PLL------------SSPKKREI--FDG  611 (785)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~--~i~------------~~~~~~~~--~~~  611 (785)
                          .....+|.+...+....+.+|++++|.|.+.+. |.+.+.|||++.  .+.            ...++.+.  ...
T Consensus       131 ----~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  206 (259)
T 3omz_A          131 ----AKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAA  206 (259)
T ss_dssp             ----------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGG
T ss_pred             ----ccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcC
Confidence                000012566666667889999999999999885 788999999531  110            01223222  123


Q ss_pred             CeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         612 ENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ..+.|+|.+++. +|+|.|.|.|.+.
T Consensus       207 ~~~~L~I~~v~~-~DsG~Y~C~~~~~  231 (259)
T 3omz_A          207 KSVALTISALQL-EDSAKYFCALGES  231 (259)
T ss_dssp             TBCCEEESSCCG-GGCSEEEEEEESC
T ss_pred             CEEEEEECCCCh-hHCEEEEEEEeCc
Confidence            456799999999 9999999999853

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.66  E-value=3e-17  Score=159.32  Aligned_cols=183  Identities=11%  Similarity=0.101  Sum_probs=115.1

Q ss_pred             Ce-EeeeeeeeeeeecCeEEEEEEEecC-CC-C-ceEEEeCCEEe-cCCCCeeEEeeCC----eEEEEEccCCCCCCcee
Q psy2775         559 PL-FIERFEEKTVKEKGTIRLMAKVKAS-PA-P-SIVWFRNNKPL-LSSPKKREIFDGE----NIILELKEADSETDAGD  629 (785)
Q Consensus       559 p~-~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p-~v~W~~~~~~i-~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~  629 (785)
                      |. ++..+....+.+|++++|.|.+.|+ |. | .|+|+++|..+ ...........++    .+.|.|.++.. +|+|.
T Consensus        13 P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~-~D~g~   91 (231)
T 2w59_A           13 IQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDW-LSGER   91 (231)
T ss_dssp             CEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHH-HTTCC
T ss_pred             CEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhc-cCCCE
Confidence            44 4456666778899999999999995 74 5 99999999887 3322221111222    34799999998 99999


Q ss_pred             EEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecC
Q psy2775         630 YKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKG  709 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g  709 (785)
                      |+|.|.|..+..  .+.+.|....                                   ....+|.+....+....+ .|
T Consensus        92 Y~C~~~~~~~~~--~~~~~v~~~~-----------------------------------~~~~~P~v~v~~~~~~~~-~~  133 (231)
T 2w59_A           92 FTCTVQHEELPL--PLSKSVYRNT-----------------------------------GPTTPPLIYPFAPHPEEL-SL  133 (231)
T ss_dssp             EEEEEECTTCSS--CEEEEECCCC-----------------------------------SCCBCCEEEEECCCGGGG-GS
T ss_pred             EEEEEEcCCCCC--ceEEEEecCC-----------------------------------CCCcCCEEEEeCCCHHHh-cc
Confidence            999999988753  2334443100                                   011234332211111112 25


Q ss_pred             CeEEEEEEEecC-C-CCceEEeECCEEeeecccccc----c-----------hhh--hcccccceeeeeeceEEEEEEec
Q psy2775         710 EDLKIEVRFKAL-P-PPKAEWTVNGTVIVPSKRVKG----K-----------AEF--IKKLDDLEVKERENAVLEVEVTS  770 (785)
Q Consensus       710 ~~~~l~C~~~g~-P-~p~i~W~~~~~~~~~~~~~~~----~-----------~~~--~~~l~~~~v~~~~~~~~~c~~~~  770 (785)
                      ..++|.|.+.|+ | .+.|+|++||..+..+.....    .           ..|  .+.|.+......|.|.|+|.|.+
T Consensus       134 ~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n  213 (231)
T 2w59_A          134 SRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVH  213 (231)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEEC
T ss_pred             CceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEc
Confidence            579999999996 4 368999999999977642111    0           111  12344444444558999999997


Q ss_pred             cc----ceeEEeec
Q psy2775         771 DK----ADVKWFKN  780 (785)
Q Consensus       771 ~~----~~~~w~~~  780 (785)
                      ..    ....|...
T Consensus       214 ~~l~~~~~~~~~~~  227 (231)
T 2w59_A          214 EALPMRFSQRTLQK  227 (231)
T ss_dssp             TTSTTSEEEEEECC
T ss_pred             CCCCCchheeeEec
Confidence            43    35677653

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.66  E-value=1.3e-15  Score=146.21  Aligned_cols=173  Identities=15%  Similarity=0.132  Sum_probs=112.9

Q ss_pred             CCCeEEecCCcEEEEEEEeCC---CceEEEEECC--EEcc----------------cCCCEEEEEe--CcEEEEEEccCC
Q psy2775         422 LQDVKVSRDEKASFEIELTKG---DALVKWYKDG--KEIA----------------FSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~~~----------------~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      +....+.+|++++|.|.+.+.   .+.+.|+++.  ..+.                ...++.+..+  +....|+|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            345678899999999999873   4679999852  2110                1245565543  246789999999


Q ss_pred             CCCcEEEEEEEeecC-c---ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775         479 LEDAGEYSCRVGDTG-D---KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS  554 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~g-~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~  554 (785)
                      .+|+|.|.|.+.|.+ .   ....+.|.|...+.    .                                         
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~----~-----------------------------------------  121 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQT----T-----------------------------------------  121 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCC----B-----------------------------------------
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCC----C-----------------------------------------
Confidence            999999999999862 2   22346777764210    0                                         


Q ss_pred             CCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCCeEEE--EEccCCCCCCceeE
Q psy2775         555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGENIIL--ELKEADSETDAGDY  630 (785)
Q Consensus       555 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L--~i~~~~~~~d~G~Y  630 (785)
                         +|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+...... ...+++.+.+  .+..... +| |.|
T Consensus       122 ---~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~-~~~~~g~~~~~s~L~~~~~-~~-g~y  195 (215)
T 1c5d_H          122 ---APSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFP-AVLQSGLYTLTSSVTSSTW-PS-QTV  195 (215)
T ss_dssp             ---CCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCC-CEEETTEEEEEEEEEESST-TT-SCC
T ss_pred             ---CCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecC-cccCCCCEEEEEEEecccC-CC-CeE
Confidence               1333222212345789999999999997 888 99999998764321111 1122233322  2334443 45 999


Q ss_pred             EEEEEcCCcceEEEE
Q psy2775         631 KVVATNELGSATHGA  645 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~  645 (785)
                      +|.|.|..|......
T Consensus       196 tC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          196 TCNVAHPASSTKVDK  210 (215)
T ss_dssp             EEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCccEEE
Confidence            999999998765543

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=1.4e-15  Score=148.82  Aligned_cols=184  Identities=14%  Similarity=0.178  Sum_probs=120.2

Q ss_pred             cccCCCeEEecCCcEEEEEEEeC---CCceEEEEECC--EE---cc--------------cCCCEEEEEeC--cEEEEEE
Q psy2775         419 SVPLQDVKVSRDEKASFEIELTK---GDALVKWYKDG--KE---IA--------------FSENVTLSIDG--KKQKLII  474 (785)
Q Consensus       419 ~~~~~~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~~---~~--------------~~~~~~~~~~~--~~~~L~i  474 (785)
                      ...+..+.+.+|++++|.|.+.+   +.+.+.|+|..  ..   +.              ...++.+..+.  ....|+|
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (242)
T 1hxm_B            5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTI   84 (242)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEE
T ss_pred             CcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEE
Confidence            34556778999999999999987   45689999842  21   10              23566665443  4678999


Q ss_pred             ccCCCCCcEEEEEEEeecC--c------ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccc
Q psy2775         475 FSAGLEDAGEYSCRVGDTG--D------KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI  546 (785)
Q Consensus       475 ~~~~~~d~G~Y~C~a~n~g--~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  546 (785)
                      .+++.+|+|.|.|.+.+.+  .      ......|.|...+.... ..|.                              
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~-~~p~------------------------------  133 (242)
T 1hxm_B           85 HNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDAD-VSPK------------------------------  133 (242)
T ss_dssp             CSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSC-CSCB------------------------------
T ss_pred             CCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCC-cCCC------------------------------
Confidence            9999999999999999853  1      11245777775321000 0000                              


Q ss_pred             ccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCE-EecCCCCeeEEeeCC----eEEEEEc
Q psy2775         547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNK-PLLSSPKKREIFDGE----NIILELK  619 (785)
Q Consensus       547 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~-~i~~~~~~~~~~~~~----~~~L~i~  619 (785)
                                  |.+.. +....+.+|+.++|.|.+.|. |. +.|.|++++. .+...........++    ...|.|.
T Consensus       134 ------------~~v~~-p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~  200 (242)
T 1hxm_B          134 ------------PTIFL-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP  200 (242)
T ss_dssp             ------------CCCCC-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC
T ss_pred             ------------ceEEC-CChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEc
Confidence                        11111 123346679999999999987 75 6999999987 554321111111222    2468887


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         620 EADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ....  | |.|+|.|.|..+.......+.+
T Consensus       201 ~~~~--~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          201 EKSL--D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             TGGG--G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             cccC--C-CEEEEEEEeCCCCCCceeEeec
Confidence            6643  4 9999999999988766555554

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.65  E-value=9.6e-16  Score=127.48  Aligned_cols=94  Identities=26%  Similarity=0.409  Sum_probs=87.1

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+..+.++.+...+...+|.|.++.. +|+|.|+|.|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~   84 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHT-DDSGTYRAVCT   84 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCc-ccCEEEEEEEE
Confidence            34689999999999999999999999999999999999999999888888777778888999999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |..|....++.|.|+
T Consensus        85 N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           85 NYKGEASDYATLDVT   99 (103)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEEE
Confidence            999999999999887

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.65  E-value=1.8e-16  Score=153.45  Aligned_cols=181  Identities=18%  Similarity=0.240  Sum_probs=119.3

Q ss_pred             cCCCCeeeecCCceE-ecCCCeEEEEEEEEecC----CCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCC
Q psy2775           9 EGIPPTFSKKTKPVY-AEENSEVTLEVRLVAVP----EPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~-v~~G~~v~l~C~~~g~p----~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      ...|+.+...|.... +..|++++|.|.+.|.+    ...|.|+++|..+....... ....++.....+.|.|...+.+
T Consensus        20 ~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~   99 (240)
T 4acp_A           20 LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL   99 (240)
T ss_dssp             ---CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhcc
Confidence            345666777888877 77899999999999874    34799999999885432111 1122334445578999988888


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEEEeECCEEcccceE-
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVEWYKDGKLIKDRQI-  159 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W~~~g~~~~~~~~-  159 (785)
                      |.|.|+|.|.+..+.......+........+|.+...........|+.+.|.|.+.|+ |.+ .++|++||..+..... 
T Consensus       100 d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~  179 (240)
T 4acp_A          100 NGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKAT  179 (240)
T ss_dssp             HTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred             CCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCcc
Confidence            9999999999987643233223221223456777654443333458999999999984 543 8999999998754321 


Q ss_pred             ---EEeCC----EEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         160 ---TSEKN----THTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       160 ---~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                         ...++    .+.|.|.....+|.|.|+|+|.+..
T Consensus       180 ~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          180 PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence               11122    2456777666678999999999875

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=1.5e-15  Score=128.80  Aligned_cols=93  Identities=22%  Similarity=0.333  Sum_probs=84.4

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|.|+..+....+.+|+.++|.|.+.|.|.|.|.|+|++..+..+.++.+...+...+|.|.++.. +|+|.|+|.|.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N   84 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ-EHCGCYTLLVEN   84 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCT-TTCEEEEEEEEC
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh-hcCEEEEEEEEE
Confidence            4699998889999999999999999999999999999999999887777777667788999999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|.
T Consensus        85 ~~g~~~~~~~l~V~   98 (114)
T 2cqv_A           85 KLGSRQAQVNLTVV   98 (114)
T ss_dssp             SSCEEECCEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            99988887777775

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.64  E-value=3.2e-15  Score=144.26  Aligned_cols=170  Identities=15%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             CCeEEecCCcEEEEEEEeCC---CceEEEEECC--EEc-------------------ccCCCEEEEEe--CcEEEEEEcc
Q psy2775         423 QDVKVSRDEKASFEIELTKG---DALVKWYKDG--KEI-------------------AFSENVTLSID--GKKQKLIIFS  476 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~~-------------------~~~~~~~~~~~--~~~~~L~i~~  476 (785)
                      ....+.+|++++|.|.+.+.   .+.+.|++..  ...                   ....++.+..+  .....|+|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            45678899999999999862   5679999732  110                   01256666554  3467899999


Q ss_pred             CCCCCcEEEEEEEeecC---cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         477 AGLEDAGEYSCRVGDTG---DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~g---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      ++.+|+|.|.|.+.|..   .......|.|...+.                                             
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~---------------------------------------------  122 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP---------------------------------------------  122 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC---------------------------------------------
T ss_pred             CCHHHCEEEEEEEECCChhheECCCEEEEEecCCC---------------------------------------------
Confidence            99999999999999852   223445677763210                                             


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEec-CCC-C-ceEEEeCCEEecCCCCeeEE-eeCC----eEEEEEccCCCCC
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPA-P-SIVWFRNNKPLLSSPKKREI-FDGE----NIILELKEADSET  625 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~-p-~v~W~~~~~~i~~~~~~~~~-~~~~----~~~L~i~~~~~~~  625 (785)
                         .+|.+........ .+|+.++|.|.+.| +|. + .+.|+++|..+......... ..++    .+.|+|..... +
T Consensus       123 ---~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~  197 (221)
T 3m8o_H          123 ---TSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQC-L  197 (221)
T ss_dssp             ---BCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGS-C
T ss_pred             ---CCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHc-C
Confidence               0133331111222 78999999999998 776 4 89999999776321111011 1111    23599999888 8


Q ss_pred             CceeEEEEEEcCCcceE
Q psy2775         626 DAGDYKVVATNELGSAT  642 (785)
Q Consensus       626 d~G~Y~C~a~n~~g~~~  642 (785)
                      |+|.|+|.|.|..|...
T Consensus       198 d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          198 AGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             TTCEEEEEEEETTSCCE
T ss_pred             CCCeEEEEEEECCCCce
Confidence            99999999999987544

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=1.4e-15  Score=125.53  Aligned_cols=93  Identities=22%  Similarity=0.352  Sum_probs=83.4

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      .+|.|...+.+..+.+|+.++|.|.+.|.|.|.|.|+|+|..+..+.+..... .++..+|.|.++.. +|+|.|+|.|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~   82 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAI   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCc-CCCEEEEEEEE
Confidence            35889888999999999999999999999999999999999998777655443 56778899999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |..|....++.|.|.
T Consensus        83 N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           83 NIAGETSSHAFLLVQ   97 (99)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCcEEEEEEEEEe
Confidence            999999998888886

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.64  E-value=2e-16  Score=158.60  Aligned_cols=179  Identities=13%  Similarity=0.136  Sum_probs=117.0

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE---e----------c----CCCCeeEEe-eCCeEEEE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---L----------L----SSPKKREIF-DGENIILE  617 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~---i----------~----~~~~~~~~~-~~~~~~L~  617 (785)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.|.|||++  ..   +          .    ...++.... .+...+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            366677778899999999999999998898999999964  11   1          0    023344333 24567899


Q ss_pred             EccCCCCCCceeEEEEEEcCCc------ceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccc
Q psy2775         618 LKEADSETDAGDYKVVATNELG------SATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE  691 (785)
Q Consensus       618 i~~~~~~~d~G~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (785)
                      |.+++. +|+|.|.|.|.|..|      .....+.|.|....                                   ...
T Consensus       104 I~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~-----------------------------------~~~  147 (279)
T 2wbj_D          104 VTSAHP-EDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDL-----------------------------------KNV  147 (279)
T ss_dssp             ESSCCG-GGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCG-----------------------------------GGC
T ss_pred             EccCCc-cCCEEEEEEEcccccCCccceeeCCCEEEEEecCC-----------------------------------CCC
Confidence            999999 999999999999532      11122456665210                                   011


Q ss_pred             cCCCcCCCCCCcEEeecCCeEEEEEEEecC-CC-CceEEeECCEEeeecccccc----------ch--hhhcccccceee
Q psy2775         692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKAL-PP-PKAEWTVNGTVIVPSKRVKG----------KA--EFIKKLDDLEVK  757 (785)
Q Consensus       692 ~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~-P~-p~i~W~~~~~~~~~~~~~~~----------~~--~~~~~l~~~~v~  757 (785)
                      .+|.+....+....+..|+.++|.|.+.|. |+ |.|+|++||..+..+.....          ..  .....|.+....
T Consensus       148 ~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~  227 (279)
T 2wbj_D          148 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF  227 (279)
T ss_dssp             BCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTT
T ss_pred             CCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHH
Confidence            345543322222334579999999999997 54 69999999999876543220          00  111234444444


Q ss_pred             eee-ceEEEEEEeccc
Q psy2775         758 ERE-NAVLEVEVTSDK  772 (785)
Q Consensus       758 ~~~-~~~~~c~~~~~~  772 (785)
                      ..| .+.|+|.|.++.
T Consensus       228 ~~d~~~~YtC~v~n~~  243 (279)
T 2wbj_D          228 WQNPRNHFRCQVQFYG  243 (279)
T ss_dssp             TTCTTCEEEEEEEECC
T ss_pred             hccCCCEEEEEEEeCC
Confidence            433 678999999743

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.64  E-value=3.3e-15  Score=147.40  Aligned_cols=172  Identities=15%  Similarity=0.148  Sum_probs=113.8

Q ss_pred             CCCeEEecCCcEEEEEEEeC-C--CceEEEEECC--EEcc-----------------cCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTK-G--DALVKWYKDG--KEIA-----------------FSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~-~--~~~i~W~~~~--~~~~-----------------~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +....+.+|++++|.|.+.+ +  .+.+.|+|+.  ..+.                 ...++.+..+  .....|+|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            34667889999999999987 3  4789999863  2110                 1246666554  34678999999


Q ss_pred             CCCCcEEEEEEEeecCc----ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         478 GLEDAGEYSCRVGDTGD----KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~g~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      +.+|+|.|.|.+.|.+.    ....+.|.|...+.    .                                        
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~----~----------------------------------------  128 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT----T----------------------------------------  128 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC----B----------------------------------------
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEccCCC----C----------------------------------------
Confidence            99999999999998521    11335677765210    0                                        


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeC---CeEEEEEccCCCCCCce
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG---ENIILELKEADSETDAG  628 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~---~~~~L~i~~~~~~~d~G  628 (785)
                          +|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+...........+   ..+.|.|..+.. +| |
T Consensus       129 ----~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g  202 (261)
T 2xqy_G          129 ----APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-Q  202 (261)
T ss_dssp             ----CCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TT-S
T ss_pred             ----CCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEecccc-CC-C
Confidence                1333221112246789999999999985 877 99999998765311111111111   135699998887 78 9


Q ss_pred             eEEEEEEcCCcceEE
Q psy2775         629 DYKVVATNELGSATH  643 (785)
Q Consensus       629 ~Y~C~a~n~~g~~~~  643 (785)
                      .|+|.|.|.......
T Consensus       203 ~YtC~v~n~~~~~~~  217 (261)
T 2xqy_G          203 SITCNVAHPASSTKV  217 (261)
T ss_dssp             CCEEEEEEGGGTEEE
T ss_pred             EEEEEEEECCCCccE
Confidence            999999998765443

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.64  E-value=1.7e-15  Score=147.84  Aligned_cols=181  Identities=14%  Similarity=0.193  Sum_probs=119.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC----CCeeEEEECCE-----Ec---c----------------CCCCEEEeecCCcc
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP----EPDLLWYYNGE-----PL---Q----------------ETDEVVFSDQSDMH   68 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p----~~~i~W~~~~~-----~~---~----------------~~~~~~~~~~~~~~   68 (785)
                      ..|..+.+.+|++|+|.|.+.+.+    ...+.||+...     .+   .                ...|+.+..+..  
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--   82 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTP--   82 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGG--
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECC--
Confidence            456678999999999999998765    34899998431     11   1                012333332211  


Q ss_pred             ceEEEEEEcccCCCCCeEEEEEEEcCCe-----------e--EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEE
Q psy2775          69 SYVSIVTIKSIKKREEGVYTVVAKNREG-----------E--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV  135 (785)
Q Consensus        69 ~~~~~L~i~~~~~~D~G~Y~C~a~~~~~-----------~--~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C  135 (785)
                      .....|+|.+++.+|+|.|.|.+.+..+           .  ......|.|....+.+|.+........+..|+.+.|.|
T Consensus        83 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           83 KNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             GTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             CCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEE
Confidence            1235699999999999999999986531           1  11224566654455667776444444556799999999


Q ss_pred             EEecc-CCC-eEEEeECCEEcccce---EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         136 QVGGE-PSP-KVEWYKDGKLIKDRQ---ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       136 ~~~g~-p~~-~v~W~~~g~~~~~~~---~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      .+.+. |.+ .+.|+++|..+....   ....++    .+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence            99874 433 589999987543211   111112    2468899988888 9999999998876665555544

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.64  E-value=2e-15  Score=124.49  Aligned_cols=93  Identities=22%  Similarity=0.484  Sum_probs=86.4

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+..+.++.+..++...+|.|.++.. +|+|.|+|.|.|
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n   83 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT-SDSGLYTCTVKN   83 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCc-ccCEEEEEEEEe
Confidence            3588988889999999999999999999999999999999999888888888888888999999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|+
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 3puc_A           84 SAGSVSSSCKLTIK   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEeEEEEEEEE
Confidence            99999999998886

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.64  E-value=1.2e-14  Score=140.20  Aligned_cols=170  Identities=15%  Similarity=0.170  Sum_probs=115.3

Q ss_pred             CceEeccCCcEEEEEEEeccC--CCeEEEeECC--EE---cc---------------cceEE--E--eCCEEEEEEcccC
Q psy2775         121 HDVSITEGESAVLSVQVGGEP--SPKVEWYKDG--KL---IK---------------DRQIT--S--EKNTHTLTLIQCS  174 (785)
Q Consensus       121 ~~~~~~~G~~v~l~C~~~g~p--~~~v~W~~~g--~~---~~---------------~~~~~--~--~~~~~~L~i~~~~  174 (785)
                      ..+.+.+|+.++|.|.+.+.+  .+.+.|||..  ..   +.               ..++.  .  ..+..+|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            466788999999999998765  4689999842  11   10               01111  1  1235789999999


Q ss_pred             CCCcEEEEEEEEcCCe----e--EEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeC
Q psy2775         175 TKDKGRYSVKVTNKEG----T--VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT  248 (785)
Q Consensus       175 ~~d~G~Y~C~a~n~~g----~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  248 (785)
                      .+|+|.|.|.+.+..|    .  ....+.|.|....                            +.+|.+........+.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~----------------------------~~~P~i~~~~~~~~~~  139 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS----------------------------ASAPTLFPLVSCENSN  139 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC----------------------------CBCCEEEEEECTTCCC
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCC----------------------------CCCCEEEEecCCcccC
Confidence            9999999999998752    1  1233567775321                            1335554322223457


Q ss_pred             CCCeEEEEEEEccC-CCC-eEEEEE-CCEEcccce---EEEeCC----EEEEEEccCCC--CCCeEEEEEEEeCCCceEE
Q psy2775         249 EGESAVLSVQVGGE-PSP-KVEWYK-DGKLIKDRQ---ITSEKN----THTLTLIQCST--KDKGRYSVKVTNKEGTVES  316 (785)
Q Consensus       249 ~G~~~~l~C~~~g~-p~~-~v~W~~-~~~~l~~~~---~~~~~~----~~~l~i~~~~~--~d~G~Y~C~~~n~~g~~~~  316 (785)
                      +|+.++|.|.+.+. |.+ .+.|++ +|..+....   ....++    .+.|.|.....  +|.|.|+|.|.|..+....
T Consensus       140 ~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~  219 (223)
T 1dee_B          140 PSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK  219 (223)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred             CCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence            89999999999876 766 999999 888775310   000112    34688887776  8899999999999887665


Q ss_pred             EE
Q psy2775         317 AA  318 (785)
Q Consensus       317 ~~  318 (785)
                      ..
T Consensus       220 ~~  221 (223)
T 1dee_B          220 DV  221 (223)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.64  E-value=8.5e-16  Score=124.90  Aligned_cols=90  Identities=21%  Similarity=0.274  Sum_probs=78.6

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--EEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      +|.|...+....+.+|+.++|.|.+.|+|.|.|+|+|++  ..+...  ..........+|.|.++.. +|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKR-ADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCG-GGCEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCCh-hcCEEEEEEEE
Confidence            588888888999999999999999999999999999999  877544  3344456678899999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |..|....++.|.|+
T Consensus        79 N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           79 NELGEDEAIFEVIVQ   93 (93)
T ss_dssp             ETTEEEEEEEEEEEC
T ss_pred             cCCCeEEEEEEEEEC
Confidence            999998888888773

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.64  E-value=1.5e-15  Score=147.77  Aligned_cols=180  Identities=14%  Similarity=0.195  Sum_probs=115.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCee--EEEECCE-----Ec-----cC-----------CCCEEEeecCCccceEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDL--LWYYNGE-----PL-----QE-----------TDEVVFSDQSDMHSYVS   72 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i--~W~~~~~-----~~-----~~-----------~~~~~~~~~~~~~~~~~   72 (785)
                      .|..+.+.+|++|+|.|.+.+.+  ...+  .||+...     .+     ..           ..|+.+..+...  ...
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~   83 (232)
T 3qhz_H            6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSK--SQV   83 (232)
T ss_dssp             EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTT--TEE
T ss_pred             cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCC--CEE
Confidence            45568899999999999997642  2344  9998421     11     00           134444433222  235


Q ss_pred             EEEEcccCCCCCeEEEEEEEcCC--------eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCC--
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNRE--------GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS--  142 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~~--------~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~--  142 (785)
                      +|+|.+++.+|+|.|.|.+.+..        ........|.|....+.+|.+........+..|+.+.|.|.+.+.++  
T Consensus        84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~  163 (232)
T 3qhz_H           84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  163 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred             EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence            69999999999999999999763        12223345667544556677764334445667999999999987543  


Q ss_pred             CeEEEeECCEEcccce---EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         143 PKVEWYKDGKLIKDRQ---ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       143 ~~v~W~~~g~~~~~~~---~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      ..+.|+++|..+....   ....++    .+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       164 ~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             CEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             eEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            3688999986543211   111111    2468899888888 9999999998877666665554

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.63  E-value=7.4e-15  Score=142.55  Aligned_cols=180  Identities=17%  Similarity=0.207  Sum_probs=114.4

Q ss_pred             CCeEEecCCcEEEEEEEeCC---CceEEEEECC--EE---c-------------ccCCCEEEEEe--CcEEEEEEccCCC
Q psy2775         423 QDVKVSRDEKASFEIELTKG---DALVKWYKDG--KE---I-------------AFSENVTLSID--GKKQKLIIFSAGL  479 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~---~-------------~~~~~~~~~~~--~~~~~L~i~~~~~  479 (785)
                      ....+.+|++++|.|.+.+.   .+.+.|+|..  ..   +             ....++.+..+  +....|+|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            44678899999999999873   4679999842  21   1             01356666654  3467899999999


Q ss_pred             CCcEEEEEEEeec-C--c----ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         480 EDAGEYSCRVGDT-G--D----KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       480 ~d~G~Y~C~a~n~-g--~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      +|+|.|.|.+.+. +  .    ....+.|.|...+.                                            
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------------------  123 (232)
T 1dn0_B           88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSA--------------------------------------------  123 (232)
T ss_dssp             GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCC--------------------------------------------
T ss_pred             ccCEEEEEEEecCCcCCchhhhcccceEEEEccCCC--------------------------------------------
Confidence            9999999999842 2  1    12345777765210                                            


Q ss_pred             CCCCCCCeEeeeeeeeeeeec-CeEEEEEEEecC-CCC-ceEEEe-CCEEecCCCCeeEEeeCC----eEEEEEccCCCC
Q psy2775         553 GSPGQAPLFIERFEEKTVKEK-GTIRLMAKVKAS-PAP-SIVWFR-NNKPLLSSPKKREIFDGE----NIILELKEADSE  624 (785)
Q Consensus       553 ~~~~~~p~~~~~~~~~~v~~g-~~v~l~C~~~g~-P~p-~v~W~~-~~~~i~~~~~~~~~~~~~----~~~L~i~~~~~~  624 (785)
                          .+|.+........+.+| +.++|.|.+.|. |.| .|.|++ ||..+...........++    .+.|.|......
T Consensus       124 ----~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~  199 (232)
T 1dn0_B          124 ----SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVM  199 (232)
T ss_dssp             ----BCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC-
T ss_pred             ----CCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhc
Confidence                01333221112234578 999999999986 887 999999 998875400000001122    246888776410


Q ss_pred             -CCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         625 -TDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       625 -~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                       +|.|.|+|.|.|..|.......|.|.
T Consensus       200 ~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          200 AGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             --CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             ccCCCeEEEEEEeCCCCcceeEecCCC
Confidence             36899999999999987766665554

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.63  E-value=5.1e-17  Score=155.74  Aligned_cols=177  Identities=15%  Similarity=0.137  Sum_probs=115.2

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCC---CeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPE---PDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~---~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .|..+...|..+.+.+|++++|.|.+.|.++   +.|.|  ++..+.... ........+.....+.|+|.+++.+|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            3444466788999999999999999988754   68999  444432210 00000111222345679999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeCCCCCCCceec-CCCceEeccCCcEEEEEEEecc-CC-CeEEEeECCEEcccce-----
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNTGKPEKPSILE-PLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKDGKLIKDRQ-----  158 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~g~~~~~~~-----  158 (785)
                      |+|.|.|..+.......+.+ .....+|.+.. ++....+..|+.+.|.|.+.|. |+ +.|+|+|||..+....     
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~-~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  159 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSK-SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWA  159 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEEC-CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECC
T ss_pred             EEEEEecCCCCCceeEeecc-CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecC
Confidence            99999987653222223322 12335676643 3333346789999999999885 43 4999999999986542     


Q ss_pred             -EEE---eCCE----EEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         159 -ITS---EKNT----HTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       159 -~~~---~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                       ...   .++.    ..|.|.....+|.|.|+|.|.|...
T Consensus       160 ~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          160 SRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             CcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence             111   2221    2345555444568999999999763

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=150.37  Aligned_cols=170  Identities=12%  Similarity=0.195  Sum_probs=114.0

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---cCC---------C-CEEEeecCCccceEEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---QET---------D-EVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---~~~---------~-~~~~~~~~~~~~~~~~L~i   76 (785)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|||..  ..   +   ...         . ++.+......    . |+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~-L~I   78 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT----E-LRL   78 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSS----C-CEE
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCC----e-EEE
Confidence            455688899999999999999888888899999832  10   0   000         1 2222222211    1 999


Q ss_pred             cccCCCCCeEEEEEEEcCCe------eEEEEeeEEEeCC--CCCCCceec-CCCceEeccCCcEEEEEEEec-cCCC-eE
Q psy2775          77 KSIKKREEGVYTVVAKNREG------EAKMDIPVKVNTG--KPEKPSILE-PLHDVSITEGESAVLSVQVGG-EPSP-KV  145 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~------~~~~~~~v~v~~~--~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g-~p~~-~v  145 (785)
                      .+++.+|+|.|+|.+.+..+      .......|.|...  ...+|.+.. .+....+..|+.++|.|.+.| .|++ .+
T Consensus        79 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v  158 (253)
T 3to4_D           79 QVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  158 (253)
T ss_dssp             EEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             ccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEE
Confidence            99999999999999986543      1122335566531  224555543 223334446789999999988 5666 89


Q ss_pred             EEeECCEEcccceEEE----------eCC----EEEEEEcccCCCC-cEEEEEEEEcCC
Q psy2775         146 EWYKDGKLIKDRQITS----------EKN----THTLTLIQCSTKD-KGRYSVKVTNKE  189 (785)
Q Consensus       146 ~W~~~g~~~~~~~~~~----------~~~----~~~L~i~~~~~~d-~G~Y~C~a~n~~  189 (785)
                      +|++||..+.......          .++    .+.|.|.....+| .|.|+|.|.|..
T Consensus       159 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          159 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            9999999986543211          122    2468888877777 789999999864

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.63  E-value=1.3e-15  Score=149.68  Aligned_cols=171  Identities=14%  Similarity=0.142  Sum_probs=100.4

Q ss_pred             CCeEEecCCcEEEEEEEeCC---CceEEEEECC--EEc-----------------ccCCCEEEEEe--CcEEEEEEccCC
Q psy2775         423 QDVKVSRDEKASFEIELTKG---DALVKWYKDG--KEI-----------------AFSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      ....+.+|++++|.|.+.+.   .+.+.|++..  ..+                 ....++.+..+  .....|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            35678899999999999873   4679999853  111                 01346666654  356789999999


Q ss_pred             CCCcEEEEEEEeec-Cc---------c----eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeec
Q psy2775         479 LEDAGEYSCRVGDT-GD---------K----ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNL  544 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~-g~---------~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  544 (785)
                      .+|+|.|.|.+.|. |.         .    .....|.|...+.                                    
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~------------------------------------  131 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAST------------------------------------  131 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCC------------------------------------
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCC------------------------------------
Confidence            99999999999986 31         1    1235677764210                                    


Q ss_pred             ccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCC----eEEEEE
Q psy2775         545 FIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGE----NIILEL  618 (785)
Q Consensus       545 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~----~~~L~i  618 (785)
                                  .+|.+........+.+|+.++|.|.+.|. |.| .|.|+|++..+...........++    .+.|.|
T Consensus       132 ------------~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I  199 (257)
T 3bn9_D          132 ------------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV  199 (257)
T ss_dssp             ------------BCCEECCCCC-----------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCC
T ss_pred             ------------cCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEE
Confidence                        01333221112235689999999999986 887 999999987642111111111222    245888


Q ss_pred             ccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         619 KEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      .++.. +| |.|+|.|.|..+....
T Consensus       200 ~~~~~-~~-g~YtC~v~n~~~~~~~  222 (257)
T 3bn9_D          200 PSSSL-GT-QTYICNVNHKPSNTKV  222 (257)
T ss_dssp             C---------CEEEEEEEGGGTEEE
T ss_pred             ccccc-CC-CeEEEEEEecCCCcCE
Confidence            88876 67 9999999997665443

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.63  E-value=1.9e-16  Score=151.01  Aligned_cols=163  Identities=16%  Similarity=0.214  Sum_probs=95.9

Q ss_pred             eecCeEEEEEEEecCCC----CceEEEeCCEEecCCCC-eeEEeeCCeE----EEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         571 KEKGTIRLMAKVKASPA----PSIVWFRNNKPLLSSPK-KREIFDGENI----ILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~----p~v~W~~~~~~i~~~~~-~~~~~~~~~~----~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .+|++++|.|.+.|.|+    +.|+|+|++.++..... ......++..    .|.|..... +|+|.|+|.|.|..|..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~-~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW-LNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHH-HTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHc-cCCceEEEEEEcCcCCc
Confidence            79999999999999753    39999999988754321 1112222322    233333333 45999999999998865


Q ss_pred             EEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecC
Q psy2775         642 THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKAL  721 (785)
Q Consensus       642 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~  721 (785)
                      ..+..+.+.                                     ..+..+|.+.........+ .|..++|.|.+.|+
T Consensus        95 ~~~~~v~~~-------------------------------------~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~  136 (207)
T 1l6x_A           95 PIEKTISKA-------------------------------------KGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGF  136 (207)
T ss_dssp             CEEEEECCC-------------------------------------CSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEE
T ss_pred             ceEEEeccC-------------------------------------CCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCe
Confidence            333332210                                     0112344443222221112 46669999999995


Q ss_pred             -CCC-ceEEeECCEEeeecccccc--chhh-hcccccceeee---eeceEEEEEEeccc
Q psy2775         722 -PPP-KAEWTVNGTVIVPSKRVKG--KAEF-IKKLDDLEVKE---RENAVLEVEVTSDK  772 (785)
Q Consensus       722 -P~p-~i~W~~~~~~~~~~~~~~~--~~~~-~~~l~~~~v~~---~~~~~~~c~~~~~~  772 (785)
                       |++ .|+|++||..+........  ..+- ........+..   .|.|.|+|.+.++.
T Consensus       137 ~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~  195 (207)
T 1l6x_A          137 YPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  195 (207)
T ss_dssp             BSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             ECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCC
Confidence             543 8999999999864332211  1110 01111123333   35899999999854

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.63  E-value=3.4e-15  Score=145.79  Aligned_cols=171  Identities=14%  Similarity=0.196  Sum_probs=113.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--E---cc------------CCCCEEEeecCCccceEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--P---LQ------------ETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      +...|..+.+.+|++++|.|.+. .+.+.+.|+|++.  .   +.            ...++.+..+.   ....+|+|.
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~L~I~   77 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPS---QEQFSLILE   77 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCS---SSEEEEEES
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecC---CCEEEEEEe
Confidence            45678899999999999999985 4678999998641  1   10            12233332211   123579999


Q ss_pred             ccCCCCCeEEEEEEEcCCe-----eEEEEeeEEEeCC--CCCCCceec-CCCceEeccCCcEEEEEEEecc-CCC-eEEE
Q psy2775          78 SIKKREEGVYTVVAKNREG-----EAKMDIPVKVNTG--KPEKPSILE-PLHDVSITEGESAVLSVQVGGE-PSP-KVEW  147 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~~-----~~~~~~~v~v~~~--~~~~p~i~~-~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~W  147 (785)
                      +++.+|+|.|.|.+.+..+     .......|.|...  .+.+|.+.. .+....+..|+.+.|.|.+.|. |.+ .|.|
T Consensus        78 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  157 (238)
T 1bec_A           78 LATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSW  157 (238)
T ss_dssp             SCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEE
Confidence            9999999999999998731     1112345666532  123566543 3344456689999999999885 654 9999


Q ss_pred             eECCEEcccceE------EEeCCE----EEEEEcccCCC-CcEEEEEEEEcCC
Q psy2775         148 YKDGKLIKDRQI------TSEKNT----HTLTLIQCSTK-DKGRYSVKVTNKE  189 (785)
Q Consensus       148 ~~~g~~~~~~~~------~~~~~~----~~L~i~~~~~~-d~G~Y~C~a~n~~  189 (785)
                      ++||..+.....      ...++.    ..|.|...... +.|.|+|.|.|..
T Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          158 WVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             EETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             EECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            999998865421      122232    23445444443 4688999999864

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=157.36  Aligned_cols=178  Identities=11%  Similarity=0.153  Sum_probs=121.6

Q ss_pred             CeeeecCCceE-ecCCCeEEEEEEEEec---CC-CeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          13 PTFSKKTKPVY-AEENSEVTLEVRLVAV---PE-PDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        13 p~~~~~~~~~~-v~~G~~v~l~C~~~g~---p~-~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ..+...|.... +.+|++++|.|.+.|.   |. ..|.|++++..+..... ......++.....+.|+|..++.+|+|.
T Consensus       168 ~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~  247 (376)
T 2aty_A          168 SVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKE  247 (376)
T ss_pred             EEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCE
Confidence            34455666555 8999999999999887   32 37999999866532211 1111122333345679999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-C-CCeEEEeECCEEcccceE----E
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-P-SPKVEWYKDGKLIKDRQI----T  160 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p-~~~v~W~~~g~~~~~~~~----~  160 (785)
                      |+|.+.+..+.......+.+......+|.+...+.......|+.++|.|.+.|+ | .+.|+|+|||..+.....    .
T Consensus       248 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~  327 (376)
T 2aty_A          248 FKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIM  327 (376)
T ss_pred             EEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceE
Confidence            999999886643333333222233467777766555555669999999999986 3 458999999998754321    1


Q ss_pred             EeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         161 SEKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       161 ~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ..++    ...|.|.....+|.|.|+|+|.|...
T Consensus       328 ~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          328 NTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            1121    24577887778889999999998753

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.62  E-value=2.3e-15  Score=147.37  Aligned_cols=182  Identities=13%  Similarity=0.169  Sum_probs=117.9

Q ss_pred             eecCCceEecCCCeEEEEEEEEec--CCCeeEEEECCE-----Ec---c-----------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGE-----PL---Q-----------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~-----~~---~-----------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +..|..+.+.+|++|+|.|.+.+.  +...+.||+...     .+   .           ...|+.+..+..  ....+|
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL   80 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNS--KDTLYL   80 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGG--GTEEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCC--CCEEEE
Confidence            356778999999999999999763  346899998421     11   0           123444433221  123569


Q ss_pred             EEcccCCCCCeEEEEEEEcCC----------------------eeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEE
Q psy2775          75 TIKSIKKREEGVYTVVAKNRE----------------------GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAV  132 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~----------------------~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~  132 (785)
                      +|.+++.+|+|.|.|.+.+..                      ........|.|....+.+|.+........+..|+.+.
T Consensus        81 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~  160 (248)
T 3u2s_H           81 QMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAA  160 (248)
T ss_dssp             EECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEE
T ss_pred             EECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEE
Confidence            999999999999999998742                      1112234667765555667776444444556799999


Q ss_pred             EEEEEecc-C-CCeEEEeECCEEcccce---EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         133 LSVQVGGE-P-SPKVEWYKDGKLIKDRQ---ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       133 l~C~~~g~-p-~~~v~W~~~g~~~~~~~---~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      |.|.+.+. | +..+.|+++|..+....   ....++    .+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus       161 L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~  236 (248)
T 3u2s_H          161 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  236 (248)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence            99999874 4 45799999986542211   111111    3468888888888 9999999998876655555444

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.62  E-value=1.6e-15  Score=148.11  Aligned_cols=181  Identities=15%  Similarity=0.205  Sum_probs=113.2

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE---ec------------CCCCeeEEe-eCCeEEEEEccCCC
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---LL------------SSPKKREIF-DGENIILELKEADS  623 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~---i~------------~~~~~~~~~-~~~~~~L~i~~~~~  623 (785)
                      ...+..+.+.+|++++|.|.+. .+.+.+.|||++  ..   +.            ...++.... .+..++|.|.+++.
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             ccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            3445677899999999999995 467899999964  11   10            123333332 24567899999999


Q ss_pred             CCCceeEEEEEEcCCc---ce--EEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCC
Q psy2775         624 ETDAGDYKVVATNELG---SA--THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDP  698 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~~g---~~--~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~  698 (785)
                       +|+|.|.|.+.|..+   ..  .....|.|....                                   ....+|.+..
T Consensus        82 -~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-----------------------------------~~~~~P~v~~  125 (238)
T 1bec_A           82 -SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDL-----------------------------------RQVTPPKVSL  125 (238)
T ss_dssp             -GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCG-----------------------------------GGCBCCEEEE
T ss_pred             -ccCEEEEEEEecCCCCccccccCCCEEEEEeccC-----------------------------------CCCCCCceEE
Confidence             999999999999752   11  122456665210                                   0112444432


Q ss_pred             CCCCcEEeecCCeEEEEEEEecC-CCC-ceEEeECCEEeeeccccc---c---chh--hhcccccceeeeee-ceEEEEE
Q psy2775         699 PPPPEVLVKKGEDLKIEVRFKAL-PPP-KAEWTVNGTVIVPSKRVK---G---KAE--FIKKLDDLEVKERE-NAVLEVE  767 (785)
Q Consensus       699 ~~~~~~~~~~g~~~~l~C~~~g~-P~p-~i~W~~~~~~~~~~~~~~---~---~~~--~~~~l~~~~v~~~~-~~~~~c~  767 (785)
                      ..+....+..|+.++|.|.+.|. |+| .|.|++||..+..+.+..   .   ...  ....|.+......| .+.|+|.
T Consensus       126 ~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~  205 (238)
T 1bec_A          126 FEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQ  205 (238)
T ss_dssp             ECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEE
T ss_pred             ECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEE
Confidence            22222335679999999999996 765 999999999987664322   1   011  11233333222223 5789999


Q ss_pred             Eecccc--eeEEee
Q psy2775         768 VTSDKA--DVKWFK  779 (785)
Q Consensus       768 ~~~~~~--~~~w~~  779 (785)
                      +.++..  .+.|.+
T Consensus       206 v~~~~l~~~~~~~~  219 (238)
T 1bec_A          206 VQFHGLSEEDKWPE  219 (238)
T ss_dssp             EEECCCCTTCCCCT
T ss_pred             EEcCCCCCCcEecC
Confidence            997432  255654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.62  E-value=2.9e-15  Score=120.82  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=78.8

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|.|+..+++..+.+|++++|.|.+.+ |+|.|+|+|||.++..+.++.+..++...+|.|.++.. +|+|.|+|.|.|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~-~D~G~Y~C~a~n   81 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL-GMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCG-GGCEEEEEEETT
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCCh-hhCEEEEEEECC
Confidence            4689999999999999999999999986 55889999999999888888888888888999999999 999999999988


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      .    ..++.|.|+
T Consensus        82 ~----~~sa~L~V~   91 (93)
T 1waa_A           82 T----KSAANLKVK   91 (93)
T ss_dssp             E----EEEEEEEEE
T ss_pred             C----cEEEEEEEE
Confidence            4    457788876

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.62  E-value=8.8e-15  Score=144.21  Aligned_cols=178  Identities=13%  Similarity=0.116  Sum_probs=116.6

Q ss_pred             CCeEEecCCcEEEEEEEeCC---CceEEEEECC--E---Ec--------------ccCCCEEEEEe--CcEEEEEEccCC
Q psy2775         423 QDVKVSRDEKASFEIELTKG---DALVKWYKDG--K---EI--------------AFSENVTLSID--GKKQKLIIFSAG  478 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~---~~--------------~~~~~~~~~~~--~~~~~L~i~~~~  478 (785)
                      ..+.+.+|++++|.|.+.+.   ...+.|+|..  .   .+              ...+++.+..+  .....|+|.+++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            45678899999999999862   5579999842  1   11              11245666554  346789999999


Q ss_pred             CCCcEEEEEEEeecC-----cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCC
Q psy2775         479 LEDAGEYSCRVGDTG-----DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG  553 (785)
Q Consensus       479 ~~d~G~Y~C~a~n~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  553 (785)
                      .+|+|.|.|.+.|.+     .......|.|....                                              
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------  121 (253)
T 3liz_H           88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK----------------------------------------------  121 (253)
T ss_dssp             GGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC----------------------------------------------
T ss_pred             hhhCEEEEEEEecCCcceeeEECCCEEEEEeccC----------------------------------------------
Confidence            999999999999852     11233567776311                                              


Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCCCCeeEEeeC---CeEEEEEccCCCCCCce
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREIFDG---ENIILELKEADSETDAG  628 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~~~~~~~~~~---~~~~L~i~~~~~~~d~G  628 (785)
                        ..+|.+........+.+|+.++|.|.+.| +|.+ .+.|++++..+...........+   ..+.|.|..... +| |
T Consensus       122 --~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d-g  197 (253)
T 3liz_H          122 --TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-E  197 (253)
T ss_dssp             --CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTST-TT-S
T ss_pred             --CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHC-CC-c
Confidence              01144443333345667999999999998 6877 89999998743110000011111   125699999988 88 9


Q ss_pred             eEEEEEEcCCcceEEEEEEEEE
Q psy2775         629 DYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       629 ~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .|+|.|.|..+.......|.+.
T Consensus       198 ~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          198 TVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             CCEEEEEEGGGTEEEEEECCCC
T ss_pred             eEEEEEEECCCCcceEEEecCc
Confidence            9999999999987776666554

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.61  E-value=6.6e-15  Score=145.08  Aligned_cols=174  Identities=15%  Similarity=0.222  Sum_probs=116.0

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E--E-cc------------CCCCEEEeecCCccceEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E--P-LQ------------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~--~-~~------------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +.+...|..+.+.+|++++|.|.+. .+.+.+.||++.  .  . +.            ...++.+.....   ....|+
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~L~   79 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKK---ESFPLT   79 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSST---TBCCEE
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCC---CEEEEE
Confidence            4566778899999999999999985 457899999853  1  1 10            123444432211   113599


Q ss_pred             EcccCCCCCeEEEEEEEcCC---eeEEEEeeEEEeCC--CCCCCceecC-CCceEeccCCcEEEEEEEecc-CC-CeEEE
Q psy2775          76 IKSIKKREEGVYTVVAKNRE---GEAKMDIPVKVNTG--KPEKPSILEP-LHDVSITEGESAVLSVQVGGE-PS-PKVEW  147 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~---~~~~~~~~v~v~~~--~~~~p~i~~~-~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W  147 (785)
                      |.+++.+|+|.|.|.+.+..   ........|.|...  ...+|.+... +....+..|+.+.|.|.+.|. |. +.|+|
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  159 (252)
T 1oga_E           80 VTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  159 (252)
T ss_dssp             ECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             ECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEE
Confidence            99999999999999999861   11122334666531  1246666542 334455679999999999885 64 49999


Q ss_pred             eECCEEcccceEEE----------eCC----EEEEEEcccCC-CCcEEEEEEEEcCCe
Q psy2775         148 YKDGKLIKDRQITS----------EKN----THTLTLIQCST-KDKGRYSVKVTNKEG  190 (785)
Q Consensus       148 ~~~g~~~~~~~~~~----------~~~----~~~L~i~~~~~-~d~G~Y~C~a~n~~g  190 (785)
                      ++||..+.......          .++    .+.|.|..... +|.|.|+|.|.|...
T Consensus       160 ~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  217 (252)
T 1oga_E          160 WVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  217 (252)
T ss_dssp             EETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            99999886543211          122    23477776655 468899999998754

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=123.92  Aligned_cols=90  Identities=22%  Similarity=0.263  Sum_probs=81.1

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|.|...+.++.+.+|++++|.|.+  .|.|.++|+|||..+..+.++.+..++...+|.|.++.. +|+|.|+|.|.
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~-~D~G~Y~C~a~   81 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALT-EDEGDYVFAPD   81 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCG-GGCSEEEEEES
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCCh-hhCEEEEEEEc
Confidence            346889999999999999999999999  899999999999999988888888888888999999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |.  ....++.|.|.
T Consensus        82 N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           82 AY--NVTLPAKVHVI   94 (100)
T ss_dssp             SS--CCCEEEEEEEE
T ss_pred             CC--CeeEEEEEEEe
Confidence            98  45667777776

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.61  E-value=9.5e-15  Score=141.70  Aligned_cols=179  Identities=12%  Similarity=0.197  Sum_probs=119.9

Q ss_pred             cCCceEecCCCeEEEEEEEEec--CCCeeEEEECCE-----Ec---c-----------CCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGE-----PL---Q-----------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~-----~~---~-----------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .|..+.+.+|++|+|.|.+.+.  ....+.||+...     .+   .           ...|+.+..+...  ....|+|
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~sL~I   83 (230)
T 3n9g_H            6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTST--STVYMEL   83 (230)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTT--TEEEEEE
T ss_pred             ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCC--CEEEEEE
Confidence            3457899999999999999763  346799998421     11   0           1234444433322  2356999


Q ss_pred             cccCCCCCeEEEEEEEcCC-----e-e--EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-C-CCeEE
Q psy2775          77 KSIKKREEGVYTVVAKNRE-----G-E--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-P-SPKVE  146 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~-----~-~--~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p-~~~v~  146 (785)
                      .+++.+|+|.|.|.+.+..     + .  ......|.|......+|.+........+..|+.+.|.|.+.+. | .+.+.
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~  163 (230)
T 3n9g_H           84 SSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  163 (230)
T ss_dssp             CSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred             CCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEE
Confidence            9999999999999998754     1 1  1123457776545566777643344445689999999999874 4 34799


Q ss_pred             EeECCEEcccce-----EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         147 WYKDGKLIKDRQ-----ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       147 W~~~g~~~~~~~-----~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      |  +|..+....     ....++    .+.|.|.....+| |.|+|.|.|..+.......+.|.
T Consensus       164 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          164 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             E--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            9  655543221     111111    3478899998899 99999999988766666666554

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.60  E-value=4.4e-16  Score=150.76  Aligned_cols=197  Identities=14%  Similarity=0.209  Sum_probs=105.0

Q ss_pred             eEEEEEEeccceEEEEEE-EecCCcccccCCCeE-EecCCcEEEEEEEeCCC--c---eEEEEECCEEcccCCCE--EEE
Q psy2775         394 GEYTCSLPDQETSAELNV-VELPPEISVPLQDVK-VSRDEKASFEIELTKGD--A---LVKWYKDGKEIAFSENV--TLS  464 (785)
Q Consensus       394 G~Y~C~a~n~~~~~~~~v-~~~~~~~~~~~~~~~-v~~g~~~~l~C~~~~~~--~---~i~W~~~~~~~~~~~~~--~~~  464 (785)
                      |.|.|...|..+.-.-.. ...|..+..++.... +..|+.++|.|.+.+..  |   .|+|+++|.++......  ...
T Consensus         1 ~~~~~~~~~~~~~c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~   80 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ   80 (240)
T ss_dssp             ----------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC
T ss_pred             CceeeeeeecCCCCCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceEC
Confidence            678888887654321111 222333334444444 55699999999999832  3   69999999987442110  111


Q ss_pred             EeCc---EEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeE
Q psy2775         465 IDGK---KQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVK  540 (785)
Q Consensus       465 ~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (785)
                      .++.   .+.|.|.....+|.|.|+|+|.|. +.......+.....    ...                           
T Consensus        81 ~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~----~~~---------------------------  129 (240)
T 4acp_A           81 YNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKG----QPR---------------------------  129 (240)
T ss_dssp             ---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCS----CCB---------------------------
T ss_pred             CCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCC----CCC---------------------------
Confidence            1221   357888877778899999999996 32222222221000    001                           


Q ss_pred             EeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEec-CCCC-ceEEEeCCEEecCCCCeeEEee-CC----e
Q psy2775         541 WLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREIFD-GE----N  613 (785)
Q Consensus       541 W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~i~~~~~~~~~~~-~~----~  613 (785)
                                       +|.+..........+|+.++|.|.+.| +|.+ .|.|+|||.++..........+ ++    .
T Consensus       130 -----------------~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~  192 (240)
T 4acp_A          130 -----------------EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLY  192 (240)
T ss_dssp             -----------------CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE
T ss_pred             -----------------CCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEE
Confidence                             133333222223335899999999999 4665 8999999998743211111111 22    2


Q ss_pred             EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         614 IILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       614 ~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      +.|.|..... +|.|.|+|.|.|..-
T Consensus       193 s~L~v~~~~~-~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          193 SKLTVDKSRW-QQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEEEEHHHH-HTTCCEEEEEECTTS
T ss_pred             EEEEEChHHh-CCCCEEEEEEEECCC
Confidence            4567766544 578999999999864

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.60  E-value=5.1e-15  Score=122.05  Aligned_cols=92  Identities=28%  Similarity=0.495  Sum_probs=81.0

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee-EEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|...+....+.+|++++|.|.+.|.|.|.|.|+|++..+..+.... ...+++..+|.|.++.. +|+|.|+|.|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N   83 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER-GDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCG-GGCEEEEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCc-CCCEEEEEEEEE
Confidence            5888888889999999999999999999999999999999987665433 33455667899999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           84 EYGARQCEARLEVR   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEE
Confidence            99999998888886

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.60  E-value=3.4e-15  Score=126.70  Aligned_cols=97  Identities=31%  Similarity=0.487  Sum_probs=82.9

Q ss_pred             CCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEeeC-CeEEEEEccCCCCCCceeEE
Q psy2775         554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDG-ENIILELKEADSETDAGDYK  631 (785)
Q Consensus       554 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      ....+|.|+..+.+..+.+|++++|.|.+.|.|.|.|.|+|++..+... .++.+...+ +..+|.|.++.. +|+|.|+
T Consensus        11 ~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~   89 (116)
T 2kkq_A           11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNK-KDAGWYT   89 (116)
T ss_dssp             CCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECG-GGCEEEE
T ss_pred             CCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCc-ccCEEEE
Confidence            3456799999999999999999999999999999999999999998753 445444443 355899999999 9999999


Q ss_pred             EEEEcCCcceEEEEEEEEEe
Q psy2775         632 VVATNELGSATHGARVTVDV  651 (785)
Q Consensus       632 C~a~n~~g~~~~~~~l~V~~  651 (785)
                      |.|.|..|....++.|.|..
T Consensus        90 C~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           90 VSAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEEEEeC
Confidence            99999999988888887763

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.60  E-value=6.1e-15  Score=142.94  Aligned_cols=171  Identities=16%  Similarity=0.195  Sum_probs=113.7

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECC--EE---cc-------------CCCCEEEeecCCccceEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG--EP---LQ-------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~~---~~-------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +...|..+.+.+|++++|.|.+.+.  +.+.+.||+..  ..   +.             ...|+.+..+..  ....+|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L   81 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPS--ASTSIL   81 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCT--TTEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCC--CCEEEE
Confidence            5667889999999999999999764  55789999853  11   10             123344333221  123569


Q ss_pred             EEcccCCCCCeEEEEEEEcC--Ce--eEEEEeeEEEeCC-------CCCCCceecCCCceEeccCCcEEEEEEEecc-CC
Q psy2775          75 TIKSIKKREEGVYTVVAKNR--EG--EAKMDIPVKVNTG-------KPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS  142 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~--~~--~~~~~~~v~v~~~-------~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~  142 (785)
                      +|.+++.+|+|.|.|.+.+.  ..  .......|.|...       .+..|.+.. +....+..|+.++|.|.+.|. |.
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~  160 (230)
T 1ypz_F           82 TIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPD  160 (230)
T ss_dssp             EECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSC
T ss_pred             EECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCC
Confidence            99999999999999999974  11  1122345666521       122333333 334456679999999999886 65


Q ss_pred             -CeEEEeE-CCEEcccce---EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         143 -PKVEWYK-DGKLIKDRQ---ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       143 -~~v~W~~-~g~~~~~~~---~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                       +.|+|++ ||..+....   ....++    .+.|.|..... + |.|+|.|.|..+
T Consensus       161 ~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~  215 (230)
T 1ypz_F          161 VIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENN  215 (230)
T ss_dssp             CCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSC
T ss_pred             CeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCC
Confidence             5999999 887664321   112222    24688888775 4 999999999865

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.60  E-value=3.6e-14  Score=128.86  Aligned_cols=161  Identities=13%  Similarity=0.097  Sum_probs=110.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +...|....|.+|+++.|+|.+.. +.+. +.|.-.   +   .+...... +  .....|.|.+++. | |.|.|.+.+
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~---l---~~~~~~~~-~--~~~~~l~l~~vs~-~-g~y~C~~~c   69 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETP---L---PKKELLLP-G--NNRKVYELSNVQE-D-SQPMCYSNC   69 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECS-SSCSEEEEECS---S---CEEEECSS-S--SSEEEEEEEEECS-C-BCCEEEEEC
T ss_pred             eEEECCCcEEeCCCCEEEEEEccC-CCCccceEEee---C---CCccEecc-C--CceeEEEEEecCc-C-CEEEEEEEC
Confidence            345677889999999999999864 4454 677521   1   01111011 1  1124589999983 4 999999987


Q ss_pred             CCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC--eEEEeECCEEcccceEEEeCCEEEEEE
Q psy2775          94 REGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP--KVEWYKDGKLIKDRQITSEKNTHTLTL  170 (785)
Q Consensus        94 ~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~--~v~W~~~g~~~~~~~~~~~~~~~~L~i  170 (785)
                      ........+.|.|+.   .|..+...+....+.+|+.++|.|.+.|. |..  .|+|||+++.+............+|++
T Consensus        70 ~~~~~~~~~~l~V~~---~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~~~~~tl~~  146 (185)
T 1iam_A           70 PDGQSTAKTFLTVYW---TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV  146 (185)
T ss_dssp             SSCEEEEECEEEEEB---CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEE
T ss_pred             CCCceEEEEEEEEeC---CCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCccccEEEEE
Confidence            766777888888874   23334444444568899999999999874 443  589999999986543222233457887


Q ss_pred             cccCCCCcEEEEEEEEcCCe
Q psy2775         171 IQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       171 ~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ...+.+|...|+|+|.|..+
T Consensus       147 ~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          147 LVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             ECCSSCSSCEEEEEEEEECG
T ss_pred             eceeccCCCeEEEEEEecCc
Confidence            77677777799999998765

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.60  E-value=1.9e-15  Score=149.14  Aligned_cols=171  Identities=15%  Similarity=0.169  Sum_probs=106.0

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE---ec--CC----------C-CeeEEeeCCeEEEEEccCCCCC
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---LL--SS----------P-KKREIFDGENIILELKEADSET  625 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~---i~--~~----------~-~~~~~~~~~~~~L~i~~~~~~~  625 (785)
                      .+..+.+.+|++++|.|.+.+.+.+.+.|||..  ..   +.  .+          . ++.....+... |.|.+++. +
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~-~   84 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANM-S   84 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESC-S
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCCh-h
Confidence            345778999999999999999999999999821  10   00  00          1 23222233333 99999999 9


Q ss_pred             CceeEEEEEEcCCc------ceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCC
Q psy2775         626 DAGDYKVVATNELG------SATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPP  699 (785)
Q Consensus       626 d~G~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~  699 (785)
                      |+|.|.|.+.+..+      .....+.|.|...                                   +....+|.+...
T Consensus        85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~-----------------------------------~~~~~~P~v~~~  129 (253)
T 3to4_D           85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLED-----------------------------------LKNVFPPEVAVF  129 (253)
T ss_dssp             SCEEEEEEEECSCCSTTCCEEECCCEEEEEESC-----------------------------------STTCBCCEEEEE
T ss_pred             hCeEEEEEEecCCCCcccceEECCCEEEEEecC-----------------------------------CCCCCCCeEEEe
Confidence            99999999998754      1112235555410                                   011134444322


Q ss_pred             CCCcEEeecCCeEEEEEEEec-CCCC-ceEEeECCEEeeeccccccc----------hhh--hcccccceeeeee-ceEE
Q psy2775         700 PPPEVLVKKGEDLKIEVRFKA-LPPP-KAEWTVNGTVIVPSKRVKGK----------AEF--IKKLDDLEVKERE-NAVL  764 (785)
Q Consensus       700 ~~~~~~~~~g~~~~l~C~~~g-~P~p-~i~W~~~~~~~~~~~~~~~~----------~~~--~~~l~~~~v~~~~-~~~~  764 (785)
                      .+....+..|+.++|.|.+.| .|+| .|+|++||..+..+......          ..+  ...|.+......| .+.|
T Consensus       130 ~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~y  209 (253)
T 3to4_D          130 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF  209 (253)
T ss_dssp             ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEE
T ss_pred             CCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEE
Confidence            222222445789999999999 6777 89999999999765433211          011  1223332222233 6799


Q ss_pred             EEEEecc
Q psy2775         765 EVEVTSD  771 (785)
Q Consensus       765 ~c~~~~~  771 (785)
                      +|.|.++
T Consensus       210 tC~v~h~  216 (253)
T 3to4_D          210 RCQVQFY  216 (253)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999864

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.60  E-value=2.1e-15  Score=118.53  Aligned_cols=80  Identities=21%  Similarity=0.393  Sum_probs=71.1

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      +.++.+.+|++++|.|.+.| |.|.|+|+|||.+|..+.++.+..++...+|+|.++.. +|+|.|+|.|.|.    ..+
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n~----~~~   76 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARS-GDAGEYLCDAPQD----SRI   76 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSS-TTCEEEEEECTTT----CEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCC-cccEEEEEEECCE----EEE
Confidence            45788999999999999976 99999999999999999998888888889999999999 9999999999664    456


Q ss_pred             EEEEEE
Q psy2775         645 ARVTVD  650 (785)
Q Consensus       645 ~~l~V~  650 (785)
                      +.|.|+
T Consensus        77 a~l~V~   82 (84)
T 2lu7_A           77 FLVSVE   82 (84)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            777775

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.59  E-value=1.8e-15  Score=125.99  Aligned_cols=94  Identities=21%  Similarity=0.384  Sum_probs=85.6

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|.|...+.+..+.+|++++|.|.+.|.|.|.|.|+|+|..+..+.++.+...+...+|.|.++.. +|+|.|+|.|.
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~   90 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEGNYSVVVE   90 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCS-SCCSEEEECCB
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCc-hhCEEEEEEEE
Confidence            34688999999999999999999999999999999999999999888787777777788999999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |..|....++.|.|+
T Consensus        91 N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSCBCCEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999998888888874

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.59  E-value=4.6e-15  Score=122.57  Aligned_cols=92  Identities=29%  Similarity=0.418  Sum_probs=80.7

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEE-eeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~-~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|...+....+.+|++++|.|.+.|+|.|.|.|+|+|..+....+.... ..++..+|.|.++.. +|+|.|+|.|.|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n   83 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA-SDAGAYACVAKN   83 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCG-GGCEEEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEc
Confidence            578888888899999999999999999999999999999999877654443 345557899999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|.
T Consensus        84 ~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           84 RAGEATFTVQLDVL   97 (100)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEE
Confidence            99999888888886

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.59  E-value=1.4e-14  Score=118.76  Aligned_cols=90  Identities=19%  Similarity=0.355  Sum_probs=80.8

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .+...+.+..+.+|+.++|.|.+.|. |.|.+.|+|++..+..+.++.+...++..+|.|.++.. +|+|.|+|.|.|..
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~   81 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDY   81 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEECSS
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCCh-hhCeEEEEEEECCC
Confidence            34455678899999999999999998 99999999999999888888777778888999999999 99999999999999


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |....++.|.|.
T Consensus        82 g~~~~~~~l~V~   93 (97)
T 2bk8_A           82 GEDSSYAELFVK   93 (97)
T ss_dssp             CEEEEEEEEEET
T ss_pred             CeEeEEEEEEEE
Confidence            999998888885

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=2.6e-14  Score=121.20  Aligned_cols=95  Identities=16%  Similarity=0.250  Sum_probs=85.0

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...+..+.+.+|++++|.|.+.|.|.+.+.|++++..+....++.+.....    .++|+|.+++.+|+|.|+|
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C   80 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN----GSKLTILAARQEHCGCYTL   80 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSS----EEEEEETTCCTTTCEEEEE
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCC----EEEEEECCCChhcCEEEEE
Confidence            479999999999999999999999999999999999999999988777777765432    3569999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEeC
Q psy2775          90 VAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~~  108 (785)
                      .|.|..|.....+.|.|..
T Consensus        81 ~a~N~~g~~~~~~~l~V~~   99 (114)
T 2cqv_A           81 LVENKLGSRQAQVNLTVVD   99 (114)
T ss_dssp             EEECSSCEEECCEEEEEEC
T ss_pred             EEEECCCcEEEEEEEEEEC
Confidence            9999999988888888874

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=7.1e-15  Score=121.09  Aligned_cols=90  Identities=29%  Similarity=0.470  Sum_probs=78.7

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+.....   .......+|.|.++.. +|+|.|+|.|.|
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N   85 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDALP-EDHGTYTCLAEN   85 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSCCT-TCCBCEEEEEEC
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCCCh-hhCEEEEEEEEE
Confidence            358898888899999999999999999999999999999998865432   2445677899999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|+
T Consensus        86 ~~g~~~~~~~l~V~   99 (99)
T 2yr3_A           86 ALGQVSCSAWVTVH   99 (99)
T ss_dssp             SSCEEEEECCEEEC
T ss_pred             CCCeEEEEEEEEEC
Confidence            99999888888773

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=9.8e-15  Score=122.93  Aligned_cols=95  Identities=22%  Similarity=0.411  Sum_probs=81.8

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEee-CCeEEEEEccCCCCCCceeEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD-GENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      ..+|.|...+....+.+|+.++|.|.+.|+|.|.|.|+|++..+... .++.+... ++..+|.|.++.. +|+|.|+|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~   84 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL-DDDGNYTIM   84 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCT-TTCSCCEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCCh-hhCEEEEEE
Confidence            35688888888999999999999999999999999999999998763 44444443 4556899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEEe
Q psy2775         634 ATNELGSATHGARVTVDV  651 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~~  651 (785)
                      |.|..|....++.|.|..
T Consensus        85 a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           85 AANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             EECTTCCEEECCCEEEEC
T ss_pred             EEECCCeEEEEEEEEEEC
Confidence            999999998888888873

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.57  E-value=2.7e-14  Score=118.62  Aligned_cols=97  Identities=20%  Similarity=0.366  Sum_probs=86.0

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +....||.|...+..+.+.+|+++.|.|.+.|.|.+.+.|++++..+....++.+...+..    .+|.|.+++.+|+|.
T Consensus         3 l~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~D~G~   78 (103)
T 3qp3_A            3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV----LTLEILDCHTDDSGT   78 (103)
T ss_dssp             TTTCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTE----EEEEECSCCGGGCEE
T ss_pred             CCCCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCE----EEEEEcCCCcccCEE
Confidence            3455789999999999999999999999999999999999999999988888776654432    569999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEe
Q psy2775          87 YTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|.|..|.....+.|.|.
T Consensus        79 Y~C~a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           79 YRAVCTNYKGEASDYATLDVT   99 (103)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeCCCcEEEEEEEEEE
Confidence            999999999999888888886

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.57  E-value=5.6e-15  Score=118.16  Aligned_cols=86  Identities=17%  Similarity=0.251  Sum_probs=72.0

Q ss_pred             CCeEeeeeeeee--eeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         558 APLFIERFEEKT--VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       558 ~p~~~~~~~~~~--v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ||.|+.++++..  +.+|++++|.|.+.| |.|.|+|+|||.+|..+.++.+..++...+|.|.++.. +|+|.|+|.|.
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~-~D~G~Y~C~a~   81 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQP-SDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCG-GGCSEEEEECS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCCh-hhcEEEEEEEc
Confidence            456666666554  468999999999976 88999999999999999999888899999999999999 99999999997


Q ss_pred             cCCcceEEEEEEEE
Q psy2775         636 NELGSATHGARVTV  649 (785)
Q Consensus       636 n~~g~~~~~~~l~V  649 (785)
                      |.    ..+++|.|
T Consensus        82 n~----~~~~~ltV   91 (91)
T 2lvc_A           82 DE----CAYFTVTI   91 (91)
T ss_dssp             SC----EEEEEEEC
T ss_pred             ce----EEEEEEEC
Confidence            75    44555543

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.56  E-value=1.7e-14  Score=139.84  Aligned_cols=177  Identities=16%  Similarity=0.228  Sum_probs=113.0

Q ss_pred             ccCCCeEEecCCcEEEEEEEeC---CCceEEEEECC--EE---cc-------------cCCCEEEEEeC--cEEEEEEcc
Q psy2775         420 VPLQDVKVSRDEKASFEIELTK---GDALVKWYKDG--KE---IA-------------FSENVTLSIDG--KKQKLIIFS  476 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~~---~~-------------~~~~~~~~~~~--~~~~L~i~~  476 (785)
                      ..+..+.+.+|++++|.|.+.+   +.+.+.|++..  ..   +.             ...++.+..+.  ....|+|.+
T Consensus         6 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (230)
T 1ypz_F            6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (230)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             ccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECc
Confidence            3456778899999999999987   35679999842  11   10             12445555432  467899999


Q ss_pred             CCCCCcEEEEEEEeecC-----cceeEEEEEEEcCcccccc-cCCCeeEEeccCceeEEEEecCCceeeEEeeccccccc
Q psy2775         477 AGLEDAGEYSCRVGDTG-----DKESKATLTVEAPAVEFLT-KLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTC  550 (785)
Q Consensus       477 ~~~~d~G~Y~C~a~n~g-----~~~~~~~l~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~  550 (785)
                      ++.+|+|.|.|.+.+.+     .......|.|......+.. ..|.                                  
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~----------------------------------  131 (230)
T 1ypz_F           86 LEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPK----------------------------------  131 (230)
T ss_dssp             CCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCC----------------------------------
T ss_pred             CChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCC----------------------------------
Confidence            99999999999999841     1123457777621100000 0010                                  


Q ss_pred             CCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEe-CCEEecCCCCeeEEeeCC----eEEEEEccCCC
Q psy2775         551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFR-NNKPLLSSPKKREIFDGE----NIILELKEADS  623 (785)
Q Consensus       551 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~-~~~~i~~~~~~~~~~~~~----~~~L~i~~~~~  623 (785)
                              |.+.. +....+.+|+.++|.|.+.|. |. +.|.|++ +|..+.......+...++    .+.|+|.....
T Consensus       132 --------~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~  202 (230)
T 1ypz_F          132 --------PTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM  202 (230)
T ss_dssp             --------CCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT
T ss_pred             --------ceEEC-CCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC
Confidence                    22221 223356679999999999986 86 5999999 887765322111112232    24688877643


Q ss_pred             CCCceeEEEEEEcCCcceE
Q psy2775         624 ETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~~g~~~  642 (785)
                        | |.|+|.|.|..+...
T Consensus       203 --~-~~ytC~v~~~~~~~~  218 (230)
T 1ypz_F          203 --G-KEHRCIVKHENNKGG  218 (230)
T ss_dssp             --T-SCEEEEEECSSCTTT
T ss_pred             --C-CEEEEEEEECCCCCc
Confidence              4 999999999887543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.56  E-value=6.9e-15  Score=164.68  Aligned_cols=164  Identities=14%  Similarity=0.235  Sum_probs=115.6

Q ss_pred             CeEEecCCcEEEEEEE-eC-CCceEEEEECCEEcc------------cCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEE
Q psy2775         424 DVKVSRDEKASFEIEL-TK-GDALVKWYKDGKEIA------------FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV  489 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~-~~-~~~~i~W~~~~~~~~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  489 (785)
                      ...+.+|++++|.|.+ .+ +.+.++|++++..+.            ...+..+..++   +|.|.+++.+|+|.|+|.|
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C~~  451 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRCQA  451 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEEEE
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEEEE
Confidence            4667899999999998 44 677899999865321            12233333333   6999999999999999999


Q ss_pred             eec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeee
Q psy2775         490 GDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEE  567 (785)
Q Consensus       490 ~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~  567 (785)
                      .|. |.. ...+.|.|..++..                                                 |.+...  .
T Consensus       452 ~n~~~~~~~~~~~l~V~~~~~~-------------------------------------------------p~i~~~--~  480 (581)
T 3o3u_N          452 MNRNGKETKSNYRVRVYQIPGK-------------------------------------------------PEIVDS--A  480 (581)
T ss_dssp             ECTTSCEEEEEEEEEEEBCCCC-------------------------------------------------CEEESC--C
T ss_pred             EcCCCceeEEEEEEEEEcCCCC-------------------------------------------------CEEEcC--C
Confidence            997 655 66788888775421                                                 222211  1


Q ss_pred             eeeeecCe-EEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEe-------eCC----eEEEEEccCCCCCCceeEEEEE
Q psy2775         568 KTVKEKGT-IRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIF-------DGE----NIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       568 ~~v~~g~~-v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~-------~~~----~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      ..+.+|+. +.|.|.+.| +|.|.|+|++||..+........+.       +.+    .++|+|..+..+++.|.|+|.|
T Consensus       481 ~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~  560 (581)
T 3o3u_N          481 SELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSF  560 (581)
T ss_dssp             SEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEE
T ss_pred             cccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEE
Confidence            12445554 467999998 6999999999999987644332221       111    3579999998536689999999


Q ss_pred             EcCCcce
Q psy2775         635 TNELGSA  641 (785)
Q Consensus       635 ~n~~g~~  641 (785)
                      .|..+..
T Consensus       561 ~n~~~~~  567 (581)
T 3o3u_N          561 SPGLPRH  567 (581)
T ss_dssp             ECSSCSS
T ss_pred             eccCCCC
Confidence            9997543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.8e-14  Score=121.82  Aligned_cols=92  Identities=18%  Similarity=0.302  Sum_probs=79.1

Q ss_pred             CCCeEeee---eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         557 QAPLFIER---FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       557 ~~p~~~~~---~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      .+|.|...   .....+.+|+.++|.|.+.|+|.|.|.|+|+|..+. ..+..+...+...+|.|.++.. +|+|.|+|.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~   97 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAAR-SDSGEYELS   97 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCT-TTCEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCCh-hcCEEEEEE
Confidence            35777542   467889999999999999999999999999999996 4556666667778899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTVD  650 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~  650 (785)
                      |.|..|....++.|.|.
T Consensus        98 a~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           98 VQIENMKDTATIRIRVV  114 (118)
T ss_dssp             EECSSCEECCEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999988887877775

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.56  E-value=1.1e-14  Score=163.12  Aligned_cols=162  Identities=19%  Similarity=0.310  Sum_probs=117.0

Q ss_pred             CCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccC------------CCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          19 TKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQE------------TDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ...+.+.+|++++|.|.+ .+.|.+.|.|++++..+..            ..+..+...       .+|.|.+++.+|+|
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~-------~~L~i~~v~~~D~G  445 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN-------GSLFLPAVGIQDEG  445 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT-------SCEEESSCCGGGCE
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC-------ceEEEeccccccCe
Confidence            346889999999999998 7888899999998753211            112222211       24999999999999


Q ss_pred             EEEEEEEcCCeeE-EEEeeEEEeCCCCCCCceecCCCceEeccCCc-EEEEEEEec-cCCCeEEEeECCEEcccc--eE-
Q psy2775          86 VYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEGES-AVLSVQVGG-EPSPKVEWYKDGKLIKDR--QI-  159 (785)
Q Consensus        86 ~Y~C~a~~~~~~~-~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~-v~l~C~~~g-~p~~~v~W~~~g~~~~~~--~~-  159 (785)
                      .|+|.+.|..+.. ...+.|.|.. .+..|.+.....  .+..|+. +.|.|.+.+ +|.+.|+|++||..+...  .. 
T Consensus       446 ~Y~C~~~n~~~~~~~~~~~l~V~~-~~~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~  522 (581)
T 3o3u_N          446 IFRCQAMNRNGKETKSNYRVRVYQ-IPGKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVS  522 (581)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEB-CCCCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEE
T ss_pred             EEEEEEEcCCCceeEEEEEEEEEc-CCCCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEE
Confidence            9999999998876 6677888864 334555544432  2445555 567999987 699999999999988642  11 


Q ss_pred             -----EE--eCC----EEEEEEcccC-CCCcEEEEEEEEcCCe
Q psy2775         160 -----TS--EKN----THTLTLIQCS-TKDKGRYSVKVTNKEG  190 (785)
Q Consensus       160 -----~~--~~~----~~~L~i~~~~-~~d~G~Y~C~a~n~~g  190 (785)
                           ..  ..+    .++|.|.+++ .++.|.|+|.|.|..+
T Consensus       523 ~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          523 VKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             EEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence                 11  111    3579999988 5668999999999864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=3.4e-14  Score=117.07  Aligned_cols=95  Identities=22%  Similarity=0.369  Sum_probs=82.3

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...+..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+..+....+.   ..+|.|.+++.+|+|.|+|
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C   79 (99)
T 1g1c_A            3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMV   79 (99)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEE
T ss_pred             CCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCCcCCCEEEEE
Confidence            3589999999999999999999999999999999999999999987777655432221   2569999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEe
Q psy2775          90 VAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~  107 (785)
                      .|.|..|.....+.|.|.
T Consensus        80 ~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           80 KAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCcEEEEEEEEEe
Confidence            999999999888888875

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.56  E-value=9.2e-15  Score=144.03  Aligned_cols=176  Identities=13%  Similarity=0.144  Sum_probs=110.0

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E--E-ec------------CCCCeeEEe-eCCeEEEEEccC
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K--P-LL------------SSPKKREIF-DGENIILELKEA  621 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~--~-i~------------~~~~~~~~~-~~~~~~L~i~~~  621 (785)
                      .+...+....+.+|++++|.|.+. .+.+.+.|||+.  .  . +.            ...++.... .....+|.|.++
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v   83 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA   83 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence            344555678899999999999995 467899999953  1  1 10            112333322 134568999999


Q ss_pred             CCCCCceeEEEEEEcCC---cceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCC
Q psy2775         622 DSETDAGDYKVVATNEL---GSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDP  698 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~  698 (785)
                      +. +|+|.|.|.+.|..   ........|.|...                                   +....+|.+..
T Consensus        84 ~~-~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~~~~P~v~~  127 (252)
T 1oga_E           84 QK-NPTAFYLCASSSRSSYEQYFGPGTRLTVTED-----------------------------------LKNVFPPEVAV  127 (252)
T ss_dssp             CS-CCCEEEEEEEESSTTSCCEECCCEEEEEESC-----------------------------------GGGCBCCEEEE
T ss_pred             Ch-hhCEEEEEEEecCCccceeECCCEEEEEecc-----------------------------------cCCCCCCeEEE
Confidence            99 99999999999962   11112244665410                                   01124555543


Q ss_pred             CCCCcEEeecCCeEEEEEEEecC-CCC-ceEEeECCEEeeeccccccc--------h--hh--hcccccceeeee-eceE
Q psy2775         699 PPPPEVLVKKGEDLKIEVRFKAL-PPP-KAEWTVNGTVIVPSKRVKGK--------A--EF--IKKLDDLEVKER-ENAV  763 (785)
Q Consensus       699 ~~~~~~~~~~g~~~~l~C~~~g~-P~p-~i~W~~~~~~~~~~~~~~~~--------~--~~--~~~l~~~~v~~~-~~~~  763 (785)
                      ..+....+..|+.++|.|.+.|+ |.| .|+|++||..+..+......        .  .|  .+.|.+...... +.+.
T Consensus       128 ~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~  207 (252)
T 1oga_E          128 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNH  207 (252)
T ss_dssp             ECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCE
T ss_pred             ECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCE
Confidence            22333335579999999999995 754 99999999998766432200        1  11  112333222222 4678


Q ss_pred             EEEEEeccc
Q psy2775         764 LEVEVTSDK  772 (785)
Q Consensus       764 ~~c~~~~~~  772 (785)
                      |+|.|.++.
T Consensus       208 ytC~v~~~~  216 (252)
T 1oga_E          208 FRCQVQFYG  216 (252)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEcCC
Confidence            999999743

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=5.1e-15  Score=124.62  Aligned_cols=92  Identities=27%  Similarity=0.354  Sum_probs=74.6

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecC---CCCceEEEeCCEE-ec--CCCCeeEE--eeC----CeEEEEEccCCCCCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKP-LL--SSPKKREI--FDG----ENIILELKEADSETD  626 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~---P~p~v~W~~~~~~-i~--~~~~~~~~--~~~----~~~~L~i~~~~~~~d  626 (785)
                      |.|+..++++.+.+|++++|.|.+.|.   |.|.|.|||+... +.  .+.+..+.  +..    ..+.|+|.++.. +|
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D   86 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NF   86 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TS
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc-cc
Confidence            778889999999999999999999875   8999999997421 11  12333322  111    257899999999 99


Q ss_pred             ceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         627 AGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      +|.|+|+|+|..|..+.+++|.|++
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999999999999999986

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=9.3e-15  Score=123.14  Aligned_cols=95  Identities=26%  Similarity=0.431  Sum_probs=82.9

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +.+|.|...+....+.+|+.++|.|.+.|.|.|.|.|+|++..+....+..... .++..+|.|.++.. +|+|.|+|.|
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a   85 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS-RDAGIYTCIA   85 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCG-GGCSBBCEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCc-ccCEEEEEEE
Confidence            457999999999999999999999999999999999999999987766554433 34567899999999 9999999999


Q ss_pred             EcCCcceEEEEEEEEEe
Q psy2775         635 TNELGSATHGARVTVDV  651 (785)
Q Consensus       635 ~n~~g~~~~~~~l~V~~  651 (785)
                      .|..|....++.|.|..
T Consensus        86 ~n~~g~~~~~~~l~V~~  102 (110)
T 2dm3_A           86 TNRAGQNSFSLELVVAA  102 (110)
T ss_dssp             ECSSCEEEECCEEEEEC
T ss_pred             ECCCCEEEEEEEEEEeC
Confidence            99999988888888863

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.55  E-value=3.7e-14  Score=114.28  Aligned_cols=90  Identities=34%  Similarity=0.452  Sum_probs=81.9

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecC
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG  493 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g  493 (785)
                      .++.+..++.+..+.+|+.++|.|.+.++.+.+.|+|+|.++..+.++.+..++....|.|.+++.+|+|.|+|.|.|  
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n--   81 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN--   81 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESSSSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT--
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECCCCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC--
Confidence            467788888999999999999999998877889999999999988999999888889999999999999999999999  


Q ss_pred             cceeEEEEEEEcC
Q psy2775         494 DKESKATLTVEAP  506 (785)
Q Consensus       494 ~~~~~~~l~V~~~  506 (785)
                       ...++.|.|.++
T Consensus        82 -~~~sa~L~V~~~   93 (93)
T 1waa_A           82 -TKSAANLKVKEL   93 (93)
T ss_dssp             -EEEEEEEEEECC
T ss_pred             -CcEEEEEEEEcC
Confidence             677889998763

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=5.3e-14  Score=118.40  Aligned_cols=107  Identities=14%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEec---CCCeeEEEECCEE-c--cCCCCEEEeec--CCccceEEEEEEcccCCCCC
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAV---PEPDLLWYYNGEP-L--QETDEVVFSDQ--SDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~---p~~~i~W~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~   84 (785)
                      |.|...|.++.|.+|++++|.|.+.|.   |.|.|.|||+... +  ....++.+...  .....+...|+|.+++.+|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            679999999999999999999999875   7899999997421 1  12345555321  22222457799999999999


Q ss_pred             eEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecC
Q psy2775          85 GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP  119 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~  119 (785)
                      |.|+|+|.|..+..+..+.|.|.+.++..|.+...
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~~i~  122 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSG  122 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCCCSCCCCCCS
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEecCCCCCeEEec
Confidence            99999999999999999999998755556665443

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.55  E-value=4e-14  Score=139.75  Aligned_cols=179  Identities=13%  Similarity=0.200  Sum_probs=114.9

Q ss_pred             cCCceEecCCCeEEEEEEEEec--CCCeeEEEECC--E---Ec--------------cCCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG--E---PL--------------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+..+.+.+|++|+|.|.+.+.  ....+.||+..  .   .+              ....|+.+..+..  ....+|+|
T Consensus        29 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I  106 (256)
T 3sob_H           29 ESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTS--KNTAYLQM  106 (256)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGG--GTEEEEEE
T ss_pred             ecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCC--CCEEEEEE
Confidence            3456789999999999999753  24679999842  1   11              0113444433321  22356999


Q ss_pred             cccCCCCCeEEEEEEEcCCe-----------eEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEec-cC-CC
Q psy2775          77 KSIKKREEGVYTVVAKNREG-----------EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EP-SP  143 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~-----------~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p-~~  143 (785)
                      .+++.+|+|.|.|.+.+..+           .......|.|......+|.+........+.+|+.+.|.|.+.+ .| ++
T Consensus       107 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~  186 (256)
T 3sob_H          107 NSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  186 (256)
T ss_dssp             CSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred             CCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence            99999999999999987431           1222345677654556677764333445678999999999987 44 35


Q ss_pred             eEEEeECCEEcccce-----EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775         144 KVEWYKDGKLIKDRQ-----ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD  201 (785)
Q Consensus       144 ~v~W~~~g~~~~~~~-----~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  201 (785)
                      .+.|  +|..+....     ....++    .+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus       187 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          187 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence            7999  554443211     111111    3478899999999 99999999988766555555543

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.55  E-value=1.9e-14  Score=116.88  Aligned_cols=90  Identities=22%  Similarity=0.339  Sum_probs=76.7

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      .||.|...+..+.+.+|+++.|.|.+.|.|.|.+.|++++  ..+.......  ...    ..++|.|.+++.+|+|.|+
T Consensus         1 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~--~~~----~~~~L~i~~~~~~D~G~Y~   74 (93)
T 1wit_A            1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD--AKS----STTSIFFPSAKRADSGNYK   74 (93)
T ss_dssp             CCCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEE--EET----TEEEEECTTBCGGGCEEEE
T ss_pred             CCCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEE--ecC----CEEEEEECCCChhcCEEEE
Confidence            4899998999999999999999999999999999999999  7776543222  221    2367999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEE
Q psy2775          89 VVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v  106 (785)
                      |.|.|..|.....+.|.|
T Consensus        75 C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           75 LKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEEEE
Confidence            999999999888888776

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.55  E-value=6.1e-14  Score=136.77  Aligned_cols=177  Identities=15%  Similarity=0.173  Sum_probs=114.1

Q ss_pred             CCeEEecCCcEEEEEEEeCC-----CceEEEEECC--E---Ec---c----------------cCCCEEEEEe--CcEEE
Q psy2775         423 QDVKVSRDEKASFEIELTKG-----DALVKWYKDG--K---EI---A----------------FSENVTLSID--GKKQK  471 (785)
Q Consensus       423 ~~~~v~~g~~~~l~C~~~~~-----~~~i~W~~~~--~---~~---~----------------~~~~~~~~~~--~~~~~  471 (785)
                      ..+.+.+|++++|.|.+.+.     ...+.|++..  .   .+   .                ..+++.+..+  .....
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   87 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVF   87 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEE
Confidence            45678899999999999873     3479999832  1   11   1                1234555543  34678


Q ss_pred             EEEccCCCCCcEEEEEEEeec-Cc-------------ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCce
Q psy2775         472 LIIFSAGLEDAGEYSCRVGDT-GD-------------KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDI  537 (785)
Q Consensus       472 L~i~~~~~~d~G~Y~C~a~n~-g~-------------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (785)
                      |+|.+++.+|+|.|.|.+.+. +.             ......|.|...+                              
T Consensus        88 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~------------------------------  137 (239)
T 3tv3_H           88 LKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS------------------------------  137 (239)
T ss_dssp             EEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC------------------------------
T ss_pred             EEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC------------------------------
Confidence            999999999999999999874 21             1122345554211                              


Q ss_pred             eeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCC---
Q psy2775         538 QVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGE---  612 (785)
Q Consensus       538 ~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~---  612 (785)
                                        ..+|.+........+..|+.++|.|.+.|. |.+ .+.|++++..+...........++   
T Consensus       138 ------------------~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~  199 (239)
T 3tv3_H          138 ------------------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYS  199 (239)
T ss_dssp             ------------------CBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEE
T ss_pred             ------------------CcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEE
Confidence                              012444433334456679999999999984 655 589999987432111111111122   


Q ss_pred             -eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         613 -NIILELKEADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       613 -~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                       .+.|+|..... +| |.|+|.|.|..+.......|.+
T Consensus       200 ~~s~L~i~~~~~-~~-~~ytC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          200 LSSVVTVPSSSL-GT-QTYICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEEEEEGGGT-TT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEEEchhhc-CC-CEEEEEEEECCCCceEEEEecc
Confidence             24688998887 78 9999999999887776666654

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.54  E-value=4.2e-14  Score=137.40  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=110.2

Q ss_pred             CeEEecCCcEEEEEEEeCC---CceE--EEEECC--E---Ec-----c-----------cCCCEEEEEeC--cEEEEEEc
Q psy2775         424 DVKVSRDEKASFEIELTKG---DALV--KWYKDG--K---EI-----A-----------FSENVTLSIDG--KKQKLIIF  475 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~~---~~~i--~W~~~~--~---~~-----~-----------~~~~~~~~~~~--~~~~L~i~  475 (785)
                      ...+.+|++++|.|.+.+.   ...+  .|++..  .   .+     .           ...++.+..+.  ....|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT   88 (232)
T ss_dssp             CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence            4568899999999999862   2334  999832  1   11     0           11366665543  56789999


Q ss_pred             cCCCCCcEEEEEEEeecC---------cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccc
Q psy2775         476 SAGLEDAGEYSCRVGDTG---------DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI  546 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n~g---------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  546 (785)
                      +++.+|+|.|.|.+.+.+         .......|.|.....                                      
T Consensus        89 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------------  130 (232)
T 3qhz_H           89 NMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAST--------------------------------------  130 (232)
T ss_dssp             SCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCC--------------------------------------
T ss_pred             cCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCC--------------------------------------
Confidence            999999999999998752         112334566653210                                      


Q ss_pred             ccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCCCCeeEEeeCC----eEEEEEcc
Q psy2775         547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGE----NIILELKE  620 (785)
Q Consensus       547 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~~~~~~~~~~----~~~L~i~~  620 (785)
                                .+|.+........+..|+.++|.|.+.|.+++  .+.|++++..+...........++    .+.|.|..
T Consensus       131 ----------~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~  200 (232)
T 3qhz_H          131 ----------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS  200 (232)
T ss_dssp             ----------BCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEG
T ss_pred             ----------CCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEch
Confidence                      11444422233456679999999999986443  688999986432111111111122    24688998


Q ss_pred             CCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         621 ADSETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       621 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                      ... +| |.|+|.|.|..+.......|.+
T Consensus       201 ~~~-~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          201 SSL-GT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             GGG-GT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             hhc-CC-CEEEEEEEeCCCCccEEEEeCC
Confidence            887 78 9999999999988777666654

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.54  E-value=3.6e-16  Score=149.83  Aligned_cols=178  Identities=12%  Similarity=0.096  Sum_probs=109.0

Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCCC---CceEEEeCCEEecCCCCe-eE-EeeC---CeEEEEEccCCCCCCceeEEE
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPLLSSPKK-RE-IFDG---ENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P~---p~v~W~~~~~~i~~~~~~-~~-~~~~---~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      ++..+....+.+|++++|.|.+.|+++   +.|.| + +..+...... .. ...+   ....|.|.++.. +|+|.|+|
T Consensus         7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~-~D~g~Y~C   83 (214)
T 1ow0_A            7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW-NHGKTFTC   83 (214)
T ss_dssp             EEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHH-HHTCEEEE
T ss_pred             EEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHc-CCCCeEEE
Confidence            344466778899999999999999854   69999 4 4443211000 00 0111   345799999988 89999999


Q ss_pred             EEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeE
Q psy2775         633 VATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDL  712 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~  712 (785)
                      .|.|..+....+..|.+.                                      .+..+|.+....+....+..|+.+
T Consensus        84 ~~~~~~~~~~~~~~i~~~--------------------------------------~~~~~P~v~~~~~~~~~~~~g~~~  125 (214)
T 1ow0_A           84 TAAYPESKTPLTATLSKS--------------------------------------GNTFRPEVHLLPPPSEELALNELV  125 (214)
T ss_dssp             EECCSSCSSCEEEEEECC--------------------------------------SSCCCCEEEEECCCTTTTTSSSEE
T ss_pred             EEecCCCCCceeEeeccC--------------------------------------CCCCCCEEEecCCCHHHhccCCce
Confidence            999988754333333210                                      112344443222222235679999


Q ss_pred             EEEEEEecC-CC-CceEEeECCEEeeecccccc--chh---hh---cccccceeeee---eceEEEEEEeccc----cee
Q psy2775         713 KIEVRFKAL-PP-PKAEWTVNGTVIVPSKRVKG--KAE---FI---KKLDDLEVKER---ENAVLEVEVTSDK----ADV  775 (785)
Q Consensus       713 ~l~C~~~g~-P~-p~i~W~~~~~~~~~~~~~~~--~~~---~~---~~l~~~~v~~~---~~~~~~c~~~~~~----~~~  775 (785)
                      +|.|.+.|+ |+ +.|+|++||..+..+.....  ...   -.   .......+...   +.+.|+|.|.++.    ..+
T Consensus       126 ~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~~~~~  205 (214)
T 1ow0_A          126 TLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPLAFTQ  205 (214)
T ss_dssp             EEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTTSEEC
T ss_pred             EEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCCCCceE
Confidence            999999995 54 49999999999876631111  111   00   01111233443   3789999999844    246


Q ss_pred             EEee
Q psy2775         776 KWFK  779 (785)
Q Consensus       776 ~w~~  779 (785)
                      .|..
T Consensus       206 ~~~~  209 (214)
T 1ow0_A          206 KTID  209 (214)
T ss_dssp             CEEC
T ss_pred             EEEE
Confidence            7764

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.54  E-value=9e-14  Score=131.96  Aligned_cols=166  Identities=14%  Similarity=0.164  Sum_probs=107.9

Q ss_pred             ccCCCeEEecCCcEEEEEEEeCCCceEEEEECC--E---Ec-------ccCCCEEEEEe---CcEEEEEEccCCCCCcEE
Q psy2775         420 VPLQDVKVSRDEKASFEIELTKGDALVKWYKDG--K---EI-------AFSENVTLSID---GKKQKLIIFSAGLEDAGE  484 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~--~---~~-------~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~  484 (785)
                      ..+..+.+.+|++++|.|.+.+..+.+.|+|..  .   .+       ....++.+..+   .....|+|.+++.+|+|.
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~   85 (207)
T 1ypz_E            6 QSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGT   85 (207)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEE
T ss_pred             ECCCeEEEccCCcEEEEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEE
Confidence            345667899999999999998755689999843  1   11       12356666655   556789999999999999


Q ss_pred             EEEEEeec-Cc-----------ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCC
Q psy2775         485 YSCRVGDT-GD-----------KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL  552 (785)
Q Consensus       485 Y~C~a~n~-g~-----------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~  552 (785)
                      |.|.+.+. +.           ......|.|......                                           
T Consensus        86 Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~-------------------------------------------  122 (207)
T 1ypz_E           86 YFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP-------------------------------------------  122 (207)
T ss_dssp             EEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC-------------------------------------------
T ss_pred             EEEEEecCCcccccccccceeeecCccEEEEccCCCC-------------------------------------------
Confidence            99999985 21           113457777642100                                           


Q ss_pred             CCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       553 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                         ..+|.+..       ..+ .++|.|.+.|. |. |.|+|+++ ..+...........++.+.+.  .....+|.|.|
T Consensus       123 ---~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~--~~~~~~~~~~y  188 (207)
T 1ypz_E          123 ---PAKPSVFI-------MKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAV--KLGQYGDSNSV  188 (207)
T ss_dssp             ---CCCCEEEE-------EEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEE--ECEEESSTTTC
T ss_pred             ---CCCCeEEE-------eCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcEEEE--EeecccCCCcE
Confidence               00122221       111 27999999985 55 69999999 776544322222233444333  33221578999


Q ss_pred             EEEEEcCCcceE
Q psy2775         631 KVVATNELGSAT  642 (785)
Q Consensus       631 ~C~a~n~~g~~~  642 (785)
                      +|.|.|..+...
T Consensus       189 tC~v~~~~~~~~  200 (207)
T 1ypz_E          189 TCSVQHNSETVH  200 (207)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEECCccEe
Confidence            999999987544

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.54  E-value=4.2e-14  Score=136.59  Aligned_cols=173  Identities=13%  Similarity=0.162  Sum_probs=112.1

Q ss_pred             cCCceEecCCCeEEEEEEEEec--CCCeeEEEECC--E---Ec---c-----------CCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG--E---PL---Q-----------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~---~~---~-----------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .|..+.+.+|++|+|.|.+.+.  +...+.||+..  .   .+   .           ...|+.+..+..  .....|+|
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I   83 (226)
T 3mlr_H            6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKS--ISTAYLQW   83 (226)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGG--GTEEEEEE
T ss_pred             cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCC--CCEEEEEE
Confidence            3446899999999999999763  34689999842  1   11   0           012344333221  12356999


Q ss_pred             cccCCCCCeEEEEEEEcCCe-------eE--EEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-C-CCeE
Q psy2775          77 KSIKKREEGVYTVVAKNREG-------EA--KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-P-SPKV  145 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~~~-------~~--~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p-~~~v  145 (785)
                      .+++.+|+|.|.|.+.+..+       ..  .....|.|......+|.+........+..|+.+.|.|.+.+. | .+.+
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v  163 (226)
T 3mlr_H           84 TTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  163 (226)
T ss_dssp             SSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEE
T ss_pred             CCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEE
Confidence            99999999999999986431       11  122356665544556766543334445689999999999874 4 4589


Q ss_pred             EEeECCEEcccce-----EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE
Q psy2775         146 EWYKDGKLIKDRQ-----ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESA  195 (785)
Q Consensus       146 ~W~~~g~~~~~~~-----~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  195 (785)
                      .|  ++..+....     ....++    .+.|.|.....+| |.|+|.|.|..+.....
T Consensus       164 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  219 (226)
T 3mlr_H          164 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  219 (226)
T ss_dssp             EE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             EE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeE
Confidence            99  443332211     111111    3478899988889 99999999987654433

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2.5e-14  Score=118.05  Aligned_cols=92  Identities=24%  Similarity=0.416  Sum_probs=78.2

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|.|...+....+.+|+.++|.|.+.|+|.|.+.|+|++..+...........  ..+|.|.++.. +|+|.|+|.|.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~-~d~G~Y~C~a~   82 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE--QGTLQIKNLRI-SDTGTYTCVAT   82 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECT--TCCEEEESCCT-TTCCEEEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcC--CCEEEEccCCc-ccCEEEEEEEE
Confidence            3468999888999999999999999999999999999999998874333322222  23699999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |..|....++.|.|.
T Consensus        83 n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           83 SSSGETSWSAVLDVT   97 (100)
T ss_dssp             CSSCCCBCCEEEEEE
T ss_pred             cCCCCEEEEEEEEEe
Confidence            999999888888886

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.54  E-value=7.5e-14  Score=118.36  Aligned_cols=99  Identities=28%  Similarity=0.413  Sum_probs=85.4

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      .....+|.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+.. ..++.+...+.   ..++|+|.+++.+|+|
T Consensus        10 ~~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G   86 (116)
T 2kkq_A           10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT---GRVTLLIKDVNKKDAG   86 (116)
T ss_dssp             CCCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTT---CEEEEEEEEECGGGCE
T ss_pred             cCCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCC---CeEEEEECCCCcccCE
Confidence            4456799999999999999999999999999999999999999998875 45666655443   2346999999999999


Q ss_pred             EEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          86 VYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      .|+|.|.|..|.....+.|.|..
T Consensus        87 ~Y~C~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           87 WYTVSAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEcCCCeEEEEEEEEEeC
Confidence            99999999999998888888874

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=4e-14  Score=117.80  Aligned_cols=107  Identities=18%  Similarity=0.264  Sum_probs=86.1

Q ss_pred             CcccccccCCCCeeeecCCceEecCCCeEEEEEEEEec---CCCeeEEEECCE-EccC--CCCEEEee--cCCccceEEE
Q psy2775           2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAV---PEPDLLWYYNGE-PLQE--TDEVVFSD--QSDMHSYVSI   73 (785)
Q Consensus         2 ~s~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~---p~~~i~W~~~~~-~~~~--~~~~~~~~--~~~~~~~~~~   73 (785)
                      ||.+.-+.+.++.|...|.++.|.+|++++|.|.+.|.   |.|.|.|||+.. .+..  ..++.+..  ......+.+.
T Consensus         2 ~~~~~~~~~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (118)
T 2edn_A            2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE   81 (118)
T ss_dssp             CCCCCCCCCCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEE
T ss_pred             CCCCCCccCCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEE
Confidence            67888888999999999999999999999999999875   689999999742 2221  23444432  2222224577


Q ss_pred             EEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          74 VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      |+|.+++.+|+|.|+|+|.|..|..+..+.|.|..
T Consensus        82 L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             EEESSCCTTTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             EEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            99999999999999999999999999999998863

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=4.8e-14  Score=116.95  Aligned_cols=90  Identities=24%  Similarity=0.508  Sum_probs=76.8

Q ss_pred             CCCCe-EeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC--CeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         556 GQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       556 ~~~p~-~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      +.+|. |...+.++.+.+|++++|.|.+.| |.|.|.|+|++..+..+.  ++.+..++...+|.|.++.. +|+|.|+|
T Consensus         4 g~~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C   81 (103)
T 1x44_A            4 GSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK-ADAAEYSV   81 (103)
T ss_dssp             CCSSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECT-TTCSEEEE
T ss_pred             CCCCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCc-ccCEEEEE
Confidence            33444 788888999999999999999988 779999999999998877  56777778888999999999 99999999


Q ss_pred             EEEcCCcceEEEEEEEEEe
Q psy2775         633 VATNELGSATHGARVTVDV  651 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V~~  651 (785)
                      .|.|    ...++.|.|..
T Consensus        82 ~a~n----~~~~~~l~V~~   96 (103)
T 1x44_A           82 MTTG----GQSSAKLSVDL   96 (103)
T ss_dssp             EETT----EEEEEEEEEEC
T ss_pred             EECC----CcEEEEEEEeC
Confidence            9988    46667777763

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.53  E-value=8.3e-14  Score=114.72  Aligned_cols=94  Identities=16%  Similarity=0.349  Sum_probs=83.6

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...+..+.+.+|++++|.|.+.|.|.+.+.|++++..+....++.+...++.    .+|.|.+++.+|+|.|+|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C   79 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG----FFLEIHKTDTSDSGLYTC   79 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTE----EEEEECSCCGGGCEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCE----EEEEECCCCcccCEEEEE
Confidence            4689999999999999999999999999999999999999999988888777655432    569999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEe
Q psy2775          90 VAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~  107 (785)
                      .|.|..|.....+.|.|.
T Consensus        80 ~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           80 TVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCcEeEEEEEEEE
Confidence            999999998888888775

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.53  E-value=6.9e-14  Score=136.84  Aligned_cols=179  Identities=13%  Similarity=0.150  Sum_probs=111.8

Q ss_pred             CCCeEEecCCcEEEEEEEeC---CCceEEEEECC--EE---c--------------ccCCCEEEEEe--CcEEEEEEccC
Q psy2775         422 LQDVKVSRDEKASFEIELTK---GDALVKWYKDG--KE---I--------------AFSENVTLSID--GKKQKLIIFSA  477 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~~---~--------------~~~~~~~~~~~--~~~~~L~i~~~  477 (785)
                      +..+.+.+|++++|.|.+.+   +...+.|++..  ..   +              ...+++.+..+  .....|+|.++
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   85 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL   85 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            45677889999999999986   24579999732  11   1              01245666554  34678999999


Q ss_pred             CCCCcEEEEEEEeecC-----------------------cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecC
Q psy2775         478 GLEDAGEYSCRVGDTG-----------------------DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS  534 (785)
Q Consensus       478 ~~~d~G~Y~C~a~n~g-----------------------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (785)
                      +.+|+|.|.|.+.+.+                       .......|.|....                           
T Consensus        86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---------------------------  138 (248)
T 3u2s_H           86 RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS---------------------------  138 (248)
T ss_dssp             CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC---------------------------
T ss_pred             CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC---------------------------
Confidence            9999999999998731                       01112444444210                           


Q ss_pred             CceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-C-CCceEEEeCCEEecCCCCeeEEeeCC
Q psy2775         535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKKREIFDGE  612 (785)
Q Consensus       535 ~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P-~p~v~W~~~~~~i~~~~~~~~~~~~~  612 (785)
                                           ..+|.+........+..|+.++|.|.+.|. | .+.+.|++++..+...........++
T Consensus       139 ---------------------~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g  197 (248)
T 3u2s_H          139 ---------------------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSG  197 (248)
T ss_dssp             ---------------------CBCCEEEEECCC------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTS
T ss_pred             ---------------------CCCCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCC
Confidence                                 012444433333445679999999999985 5 34799999986432111111111112


Q ss_pred             ----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         613 ----NIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       613 ----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                          .+.|.|..... +| |.|+|.|.|..+.......|.+.
T Consensus       198 ~~~~~s~L~i~~~~~-~~-~~ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          198 LYSLSSVVTVPSSSL-GT-QTYICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             CEEEEEEEEEEGGGB-TT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred             CEEEEEEEEEChhhc-CC-CeEEEEEEECCCCcceEEEEccC
Confidence                24688888877 77 99999999998887766665543

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.52  E-value=2e-14  Score=117.17  Aligned_cols=87  Identities=24%  Similarity=0.300  Sum_probs=75.6

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|.|...+....+.+|+.++|.|.+.|.| |.+.|+|+|..+..+.++.+.    ...|.|.++.. +|+|.|+|.|.|
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~-~D~G~Y~C~a~n   81 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIP-ADSGLYACVTSS   81 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCG-GGSEEEEEEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCCh-HHCEEEEEEecc
Confidence            457888888899999999999999999998 899999999998766654332    34799999999 999999999999


Q ss_pred             CCcceEEEEEEEE
Q psy2775         637 ELGSATHGARVTV  649 (785)
Q Consensus       637 ~~g~~~~~~~l~V  649 (785)
                      ..|....++.|.|
T Consensus        82 ~~g~~~~~~~l~V   94 (95)
T 2ckn_A           82 PSGSDTTYFSVNV   94 (95)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9999888888776

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.52  E-value=9.3e-14  Score=114.37  Aligned_cols=95  Identities=21%  Similarity=0.393  Sum_probs=80.2

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ..||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+.......+   ...+|.|.+++.+|+|.|+|
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C   79 (99)
T 1u2h_A            3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG---GLCRLRILAAERGDAGFYTC   79 (99)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGG---GEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCC---CEEEEEEccCCcCCCEEEEE
Confidence            358999999999999999999999999999999999999999887665433322221   22469999999999999999


Q ss_pred             EEEcCCeeEEEEeeEEEe
Q psy2775          90 VAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~  107 (785)
                      .|.|..|.....+.|.|.
T Consensus        80 ~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           80 KAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCceeEEEEEEEE
Confidence            999999998888888875

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.52  E-value=6.9e-14  Score=125.66  Aligned_cols=92  Identities=29%  Similarity=0.495  Sum_probs=82.7

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|...+.+..+.+|+.++|.|.+.|+|.|.|.|+|++..+..+.++.+... ++..+|.|.++.. +|+|.|+|.|.|
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N  119 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKAVN  119 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCG-GGCEEEEEEEEE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCCh-hcCEEEEEEEEE
Confidence            58898888899999999999999999999999999999999987777665543 4567899999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|.
T Consensus       120 ~~G~~~~~~~l~V~  133 (154)
T 1fhg_A          120 SLGEATCTAELLVE  133 (154)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEe
Confidence            99999988888887

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.52  E-value=1.5e-13  Score=133.19  Aligned_cols=175  Identities=14%  Similarity=0.185  Sum_probs=115.0

Q ss_pred             CeEEecCCcEEEEEEEeC---CCceEEEEECC--E---Ec--------------ccCCCEEEEEeC--cEEEEEEccCCC
Q psy2775         424 DVKVSRDEKASFEIELTK---GDALVKWYKDG--K---EI--------------AFSENVTLSIDG--KKQKLIIFSAGL  479 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~---~~~~i~W~~~~--~---~~--------------~~~~~~~~~~~~--~~~~L~i~~~~~  479 (785)
                      .+.+.+|++++|.|.+.+   ....+.|++..  .   .+              ...+++.+..+.  ....|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            567889999999999976   24579999732  1   11              012466665544  467899999999


Q ss_pred             CCcEEEEEEEeecCc---------ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccccc
Q psy2775         480 EDAGEYSCRVGDTGD---------KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTC  550 (785)
Q Consensus       480 ~d~G~Y~C~a~n~g~---------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~  550 (785)
                      +|+|.|.|.+.+.+.         ......|.|...+.                                          
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------  126 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST------------------------------------------  126 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC------------------------------------------
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCC------------------------------------------
Confidence            999999999987431         11234566653210                                          


Q ss_pred             CCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-C-CCceEEEeCCEEecCCCCe--eEEeeCC----eEEEEEccCC
Q psy2775         551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKK--REIFDGE----NIILELKEAD  622 (785)
Q Consensus       551 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P-~p~v~W~~~~~~i~~~~~~--~~~~~~~----~~~L~i~~~~  622 (785)
                            .+|.+........+.+|+.++|.|.+.|. | .+.+.|  ++..+..+...  .....++    .+.|.|....
T Consensus       127 ------~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~  198 (230)
T 3n9g_H          127 ------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSS  198 (230)
T ss_dssp             ------BCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTT
T ss_pred             ------CCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHH
Confidence                  11444332333445689999999999985 4 346999  66554321110  0111112    2478999988


Q ss_pred             CCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         623 SETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      . +| |.|+|.|.|..+.......|.|.
T Consensus       199 ~-~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          199 L-GT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             B-TT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             c-CC-CeEEEEEEECCCCcceEEEccCC
Confidence            7 88 99999999998887776666654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=4.2e-14  Score=120.70  Aligned_cols=93  Identities=24%  Similarity=0.411  Sum_probs=78.6

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|.|...+.+..+.+|+.++|.|.+.|+|.|.|.|+|+|..+...........++  +|.|.++.. +|+|.|+|.|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~--~L~i~~v~~-~D~G~Y~C~a~   82 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VLQIRYAKL-GDTGRYTCIAS   82 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT--EEEEESCCG-GGCCCEEEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC--EEEEccCCc-CCCEEEEEEEE
Confidence            346888888889999999999999999999999999999999886533333333333  699999999 99999999999


Q ss_pred             cCCcceEEEEEEEEEe
Q psy2775         636 NELGSATHGARVTVDV  651 (785)
Q Consensus       636 n~~g~~~~~~~l~V~~  651 (785)
                      |..|....++.|.|..
T Consensus        83 n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQE   98 (118)
T ss_dssp             CSSCEEEEECCEEEEC
T ss_pred             cCCCcEEEEEEEEEEe
Confidence            9999988888888763

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.51  E-value=3.8e-14  Score=111.31  Aligned_cols=82  Identities=29%  Similarity=0.491  Sum_probs=74.8

Q ss_pred             CCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcceeEEEE
Q psy2775         422 LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATL  501 (785)
Q Consensus       422 ~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l  501 (785)
                      +.++.+.+|+.+.|.|.+.+|.|.|.|+|||.++..+.++.+..++....|.|.+++.+|+|.|+|.|.|   ...++.|
T Consensus         3 lt~v~~~~G~~v~l~C~vs~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~a~l   79 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ---DSRIFLV   79 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSCCSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT---TCEEEEE
T ss_pred             CeEEEEecCCCEEEEEEECCCCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC---EEEEEEE
Confidence            4577889999999999998888899999999999999999999998889999999999999999999977   7788999


Q ss_pred             EEEcC
Q psy2775         502 TVEAP  506 (785)
Q Consensus       502 ~V~~~  506 (785)
                      +|++|
T Consensus        80 ~V~eP   84 (84)
T 2lu7_A           80 SVEEP   84 (84)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            99764

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=4.5e-14  Score=117.79  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|.|...+.+..+.+|++++|.|.+.|.|.+ +.|+|++..+..+.++.+..++...+|.|.++.. +|+|.|+|.|.
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~   83 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRP-EDEGDYTFVPD   83 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCT-TTCSCEEEEEE
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCc-CCCEEEEEEEc
Confidence            346899999999999999999999999999988 9999999999888888888888888999999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |.  ....++.|.|.
T Consensus        84 n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           84 GY--ALSLSAKLNFL   96 (106)
T ss_dssp             TS--CCCCCBCEEEE
T ss_pred             cC--CceEEEEEEEE
Confidence            98  44556677765

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.51  E-value=6.6e-14  Score=115.53  Aligned_cols=94  Identities=26%  Similarity=0.499  Sum_probs=79.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+..+....+   ...+|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK---GLHSLIFEVVRASDAGAYACV   80 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETT---TEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCC---CeEEEEECCCCcccCEEEEEE
Confidence            58999999999999999999999999999999999999999887765433322221   124699999999999999999


Q ss_pred             EEcCCeeEEEEeeEEEe
Q psy2775          91 AKNREGEAKMDIPVKVN  107 (785)
Q Consensus        91 a~~~~~~~~~~~~v~v~  107 (785)
                      |.|..|.....+.|.|.
T Consensus        81 a~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           81 AKNRAGEATFTVQLDVL   97 (100)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEcCCCeEEEEEEEEEE
Confidence            99999998888888886

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.51  E-value=5.5e-14  Score=118.14  Aligned_cols=79  Identities=23%  Similarity=0.300  Sum_probs=66.6

Q ss_pred             eecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeC-------CeEEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         571 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG-------ENIILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      ..+..+.|.|.+.|+|.|+|+|+|||++|..+.+.......       ..++|.|.++.. .|+|.|+|.|.|.+|....
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEETTEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCC-CCCEEEEEEEEECCCeEEE
Confidence            36678999999999999999999999999887765444321       246899999999 9999999999999999887


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      ++.|.|.
T Consensus        92 t~~l~v~   98 (126)
T 1he7_A           92 SIMAAFM   98 (126)
T ss_dssp             EEEECCC
T ss_pred             EEEEEEE
Confidence            7777664

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=5.5e-14  Score=116.39  Aligned_cols=89  Identities=21%  Similarity=0.252  Sum_probs=79.2

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      .+|.|...+.+..+.+|++++|.|.+.|.|.+ .+.|||||..+..+.++.+..++...+|.|.++.. +|+|.|+|.|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~   85 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAP-SDAGEVVFSVR   85 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCT-TTCSCEEEEET
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCH-HHCEEEEEEEC
Confidence            35788888899999999999999999998854 89999999999888888888888889999999999 99999999985


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |    ...++.|.|+
T Consensus        86 ~----~~~~a~L~V~   96 (104)
T 2eny_A           86 G----LTSKASLIVR   96 (104)
T ss_dssp             T----EEEEECEEEE
T ss_pred             C----eeEEEEEEEe
Confidence            4    5677888887

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.3e-14  Score=116.37  Aligned_cols=94  Identities=24%  Similarity=0.390  Sum_probs=79.9

Q ss_pred             ccccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775           6 DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus         6 ~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ......||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....... . .     ...+|+|.+++.+|+|
T Consensus         5 ~~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~-~-~-----~~~~L~i~~v~~~D~G   77 (99)
T 2yr3_A            5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-E-A-----GVAELHIQDALPEDHG   77 (99)
T ss_dssp             CSCCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE-E-T-----TEEEEEECSCCTTCCB
T ss_pred             cCCcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe-e-C-----CeEEEEECCCChhhCE
Confidence            4556689999999999999999999999999999999999999998876554321 1 1     1256999999999999


Q ss_pred             EEEEEEEcCCeeEEEEeeEEE
Q psy2775          86 VYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      .|+|.|.|..|.....+.|.|
T Consensus        78 ~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           78 TYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             CEEEEEECSSCEEEEECCEEE
T ss_pred             EEEEEEEECCCeEEEEEEEEE
Confidence            999999999999888877776

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=9.9e-14  Score=113.71  Aligned_cols=92  Identities=24%  Similarity=0.325  Sum_probs=84.2

Q ss_pred             cCCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecC
Q psy2775         414 LPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG  493 (785)
Q Consensus       414 ~~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g  493 (785)
                      .|+.+..++.+..+.+|+.+.|.|.+ .+.+.+.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|.|. 
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v-~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI-SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY-   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC-SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe-CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-
Confidence            46788888899999999999999999 8888999999999999999999998888889999999999999999999997 


Q ss_pred             cceeEEEEEEEcCc
Q psy2775         494 DKESKATLTVEAPA  507 (785)
Q Consensus       494 ~~~~~~~l~V~~~~  507 (785)
                      ....++.|.|..+|
T Consensus        84 ~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           84 NVTLPAKVHVISGP   97 (100)
T ss_dssp             CCCEEEEEEEECCS
T ss_pred             CeeEEEEEEEeCCC
Confidence            55778999999875

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.51  E-value=1.7e-13  Score=123.06  Aligned_cols=101  Identities=22%  Similarity=0.394  Sum_probs=87.6

Q ss_pred             cccccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775           5 ADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus         5 ~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      +.+....||.|...+..+.+.+|++++|.|.+.|.|.+.|.|++++..+....++.+....+.   ..+|+|.+++.+|+
T Consensus        34 ~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~  110 (154)
T 1fhg_A           34 AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDD  110 (154)
T ss_dssp             CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGC
T ss_pred             hcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCC---eEEEEECCCChhcC
Confidence            345566789999999999999999999999999999999999999999988777776543321   25699999999999


Q ss_pred             eEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          85 GVYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        85 G~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      |.|+|.|.|..|.....+.|.|..
T Consensus       111 G~Y~C~a~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A          111 AKYTCKAVNSLGEATCTAELLVET  134 (154)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCeEEEEEEEEEeC
Confidence            999999999999998888888873

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.50  E-value=5e-14  Score=112.63  Aligned_cols=87  Identities=33%  Similarity=0.572  Sum_probs=76.5

Q ss_pred             cCCcccccCCCeEE--ecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         414 LPPEISVPLQDVKV--SRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       414 ~~~~~~~~~~~~~v--~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      .|+.|..+..+..+  .+|+.+.|.|.+.++.+.++|+|||.++..+.++.+..++....|.|.++..+|+|.|+|.|.|
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSCTTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECCCCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            57777777776554  5899999999998888899999999999999999999999999999999999999999999988


Q ss_pred             cCcceeEEEEEE
Q psy2775         492 TGDKESKATLTV  503 (785)
Q Consensus       492 ~g~~~~~~~l~V  503 (785)
                         ...++.|+|
T Consensus        83 ---~~~~~~ltV   91 (91)
T 2lvc_A           83 ---ECAYFTVTI   91 (91)
T ss_dssp             ---CEEEEEEEC
T ss_pred             ---eEEEEEEEC
Confidence               667777764

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.50  E-value=2.9e-14  Score=149.12  Aligned_cols=172  Identities=15%  Similarity=0.132  Sum_probs=109.2

Q ss_pred             eeeeeeee-eeecCeEEEEEEEecC-CCC---ceEEEeCCEEecCCCC-eeEEeeC----CeEEEEEccCCCCCCceeEE
Q psy2775         562 IERFEEKT-VKEKGTIRLMAKVKAS-PAP---SIVWFRNNKPLLSSPK-KREIFDG----ENIILELKEADSETDAGDYK  631 (785)
Q Consensus       562 ~~~~~~~~-v~~g~~v~l~C~~~g~-P~p---~v~W~~~~~~i~~~~~-~~~~~~~----~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      +..+.... +.+|++++|.|.+.|+ |.|   .|+|+|++..+..... ......+    ..+.|.|..+.. +|+|.|+
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~D~g~Y~  249 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDW-LNGKEFK  249 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhc-cCCCEEE
Confidence            44444444 8899999999999998 433   6999999976643211 0111111    234799999988 9999999


Q ss_pred             EEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCe
Q psy2775         632 VVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGED  711 (785)
Q Consensus       632 C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~  711 (785)
                      |.|.|..+.......+.+.                                     +.+..+|.+..... ......|+.
T Consensus       250 C~~~~~~~~~~~~~~v~~~-------------------------------------~~~~~~P~v~v~~~-~~~~~~g~~  291 (376)
T 2aty_A          250 CRVNSAAFPAPIEKTISKT-------------------------------------KGRPKAPQLYTIPP-PKEQMAKDK  291 (376)
T ss_pred             EEEecCCCCCceEEEEcCC-------------------------------------CCCCcCCeEEeeCC-CHHHhcCCc
Confidence            9999988754433333221                                     01224566554222 222345899


Q ss_pred             EEEEEEEecCC--CCceEEeECCEEeeecccccc--ch--h--hhcccccceeeeeeceEEEEEEeccc
Q psy2775         712 LKIEVRFKALP--PPKAEWTVNGTVIVPSKRVKG--KA--E--FIKKLDDLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       712 ~~l~C~~~g~P--~p~i~W~~~~~~~~~~~~~~~--~~--~--~~~~l~~~~v~~~~~~~~~c~~~~~~  772 (785)
                      ++|.|.+.|++  .+.|+|+|||..+........  ..  .  ....|.+......+.+.|+|.|.+..
T Consensus       292 ~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~  360 (376)
T 2aty_A          292 VSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEG  360 (376)
T ss_pred             eEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCC
Confidence            99999999964  448999999998854332221  11  1  11234444444456899999999854

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=6.7e-14  Score=119.43  Aligned_cols=112  Identities=18%  Similarity=0.278  Sum_probs=89.7

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ...||.|...+..+.+.+|++++|.|.+.|.|.+.+.|++++..+.. ..++.+...+       +|+|.+++.+|+|.|
T Consensus         5 ~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~-------~L~i~~v~~~D~G~Y   77 (118)
T 2eo9_A            5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG-------VLQIRYAKLGDTGRY   77 (118)
T ss_dssp             CCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT-------EEEEESCCGGGCCCE
T ss_pred             CCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC-------EEEEccCCcCCCEEE
Confidence            35689999999999999999999999999999999999999988864 3455444332       499999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCC
Q psy2775          88 TVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE  129 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~  129 (785)
                      +|.|.|..|.....+.|.|..  +..|.+...+.+..+.+|.
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~--~~~p~~~~~~~~~~~~~G~  117 (118)
T 2eo9_A           78 TCIASTPSGEATWSAYIEVQE--FGVPVQPPRPTDPNLIPSA  117 (118)
T ss_dssp             EEEEECSSCEEEEECCEEEEC--CSCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEcCCCcEEEEEEEEEEe--CCCCccCCCCCCCccCCCC
Confidence            999999999988888888874  2234444455555566654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.4e-14  Score=118.20  Aligned_cols=93  Identities=18%  Similarity=0.303  Sum_probs=74.3

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecC---CCCceEEEeCCE-EecC--CCCeeEE--eeC----CeEEEEEccCCCCC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNK-PLLS--SPKKREI--FDG----ENIILELKEADSET  625 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~---P~p~v~W~~~~~-~i~~--~~~~~~~--~~~----~~~~L~i~~~~~~~  625 (785)
                      .+.|+..++++.+.+|++++|.|.+.|.   |.|.|.|||+.. .+..  +.+..+.  +.+    ..+.|+|.++.. +
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~   90 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL-G   90 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCT-T
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCCh-h
Confidence            3778888999999999999999999985   789999999752 2221  1222221  111    257899999999 9


Q ss_pred             CceeEEEEEEcCCcceEEEEEEEEEe
Q psy2775         626 DAGDYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       626 d~G~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      |+|.|+|+|+|..|..++++.|.|++
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            99999999999999999999999974

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=8.4e-14  Score=115.53  Aligned_cols=89  Identities=19%  Similarity=0.373  Sum_probs=78.2

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|.|...+.+..+.+|+.++|.|.+.| |.+.+.|+|++..+..+.++.+..++...+|.|.++.. +|+|.|+|.|.
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~   83 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL-KDAGEYTCEVE   83 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCT-TTCSEEEEECS
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCc-ccCEEEEEEEc
Confidence            45688988899999999999999999998 88899999999999888888888888888999999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |    ...++.|.|.
T Consensus        84 n----~~~~~~l~V~   94 (103)
T 2edf_A           84 A----SKSTASLHVE   94 (103)
T ss_dssp             S----CEEEEEEEEC
T ss_pred             c----CCcEEEEEEe
Confidence            9    3455666664

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.50  E-value=2.3e-14  Score=118.29  Aligned_cols=91  Identities=22%  Similarity=0.402  Sum_probs=74.2

Q ss_pred             CCeEeeee----eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee-EEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         558 APLFIERF----EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       558 ~p~~~~~~----~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      +|.|...+    ....+.+|+.++|.|.+.|.|.|.+.|+|+|..+..+.+.. ........+|.|.++.. +|+|.|+|
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C   82 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTC   82 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCG-GGCEEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCc-CCCEEEEE
Confidence            57776543    46788999999999999999999999999999987654321 12333445799999999 99999999


Q ss_pred             EEEcCCcceEEEEEEEE
Q psy2775         633 VATNELGSATHGARVTV  649 (785)
Q Consensus       633 ~a~n~~g~~~~~~~l~V  649 (785)
                      .|.|..|....++.|.|
T Consensus        83 ~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           83 VVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEEEE
Confidence            99999999888887776

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.49  E-value=5.7e-15  Score=126.99  Aligned_cols=92  Identities=20%  Similarity=0.220  Sum_probs=75.8

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCc-eEEEeCCEEecC--CCCeeEE--eeCC--eEEEEEccCCCCCCc-eeE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLS--SPKKREI--FDGE--NIILELKEADSETDA-GDY  630 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~i~~--~~~~~~~--~~~~--~~~L~i~~~~~~~d~-G~Y  630 (785)
                      |.|.. +....+.+|+.++|.|.+.|.|.|. |.|+|++..+..  ..++.+.  ..+.  ..+|.|.++.. +|+ |.|
T Consensus        15 P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~~G~Y   92 (122)
T 2cry_A           15 PIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR-ADFQTIY   92 (122)
T ss_dssp             CCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH-HHHHSCE
T ss_pred             CCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCCh-hhCCceE
Confidence            66666 6778899999999999999999997 999999999875  3444442  2233  56899999999 998 999


Q ss_pred             EEEEEcCCcceEEEEEEEEEee
Q psy2775         631 KVVATNELGSATHGARVTVDVE  652 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~V~~~  652 (785)
                      +|.|.|..|.....+.|.|+..
T Consensus        93 ~C~a~N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           93 NCTAWNSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             EEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEECCCCeEEEEEEEEECCC
Confidence            9999999999998888887643

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=9.2e-14  Score=115.54  Aligned_cols=89  Identities=20%  Similarity=0.275  Sum_probs=76.4

Q ss_pred             CCCeEeeeeee---eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         557 QAPLFIERFEE---KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       557 ~~p~~~~~~~~---~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      .+|.++..+..   ..+.+|+.++|.|.+.|.|.| +.|+|++..+..+.++.+...+...+|.|.+++. +|+|.|+|.
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~   83 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV-QDSGEFECR   83 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCT-TTCEEEEEE
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCCh-hhCEEEEEE
Confidence            35777766665   789999999999999999999 9999999999888888787788888999999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEEe
Q psy2775         634 ATNELGSATHGARVTVDV  651 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~~  651 (785)
                      |.|..+    .+.|.|.+
T Consensus        84 a~n~~~----~~~l~V~~   97 (104)
T 2e6p_A           84 TEGVSA----FFGVTVQD   97 (104)
T ss_dssp             CSSCCC----CEEEEEEC
T ss_pred             ECCceE----EEEEEEcC
Confidence            999754    55666653

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=7.1e-14  Score=117.67  Aligned_cols=97  Identities=23%  Similarity=0.517  Sum_probs=83.5

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ...||.|...+..+.+.+|++++|.|.+.|.|.+.|.|++++..+....+..+....+.   ..+|+|.+++.+|+|.|+
T Consensus         6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~   82 (110)
T 2dm3_A            6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG---VHSLIIEPVTSRDAGIYT   82 (110)
T ss_dssp             CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTS---CEEEEESSCCGGGCSBBC
T ss_pred             CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCC---eEEEEEeeCCcccCEEEE
Confidence            35799999999999999999999999999999999999999998877665544433321   256999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEeC
Q psy2775          89 VVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~  108 (785)
                      |.|.|..|.....+.|.|..
T Consensus        83 C~a~n~~g~~~~~~~l~V~~  102 (110)
T 2dm3_A           83 CIATNRAGQNSFSLELVVAA  102 (110)
T ss_dssp             EEEECSSCEEEECCEEEEEC
T ss_pred             EEEECCCCEEEEEEEEEEeC
Confidence            99999999988888998874

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.49  E-value=9.3e-14  Score=114.83  Aligned_cols=79  Identities=23%  Similarity=0.317  Sum_probs=65.5

Q ss_pred             eecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEE-e-eC---CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         571 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-F-DG---ENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~-~-~~---~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      ..|..+.|.|.+.|+|.|.|+|+|+|..+..+.+.... . .+   ..++|.|.++.. +|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH-MNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEECSSCEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCc-ccCEEEEEEEEeCCCcEeEEE
Confidence            45788999999999999999999999999877553222 1 11   235699999999 999999999999999998888


Q ss_pred             EEEEE
Q psy2775         646 RVTVD  650 (785)
Q Consensus       646 ~l~V~  650 (785)
                      .|.|.
T Consensus        93 ~l~V~   97 (103)
T 1wwb_X           93 SAHFM   97 (103)
T ss_dssp             EECCS
T ss_pred             EEEEC
Confidence            87775

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.49  E-value=1.2e-13  Score=115.62  Aligned_cols=92  Identities=22%  Similarity=0.317  Sum_probs=73.5

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCC---CceEEEeCCEEecC---CCCeeEE--ee----CCeEEEEEccCCCCC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPLLS---SPKKREI--FD----GENIILELKEADSET  625 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~---p~v~W~~~~~~i~~---~~~~~~~--~~----~~~~~L~i~~~~~~~  625 (785)
                      .|.|+..+..+.+.+|++++|.|.+.|.|.   |.|.|||++.....   +.++.+.  ..    .....|.|.+++. +
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~   82 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP-A   82 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCG-G
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCC-c
Confidence            488888889999999999999999999998   99999998732221   1222221  11    1256899999999 9


Q ss_pred             CceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         626 DAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       626 d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      |+|.|+|.|.|..|...+++.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCEEEEEEEecCCCceEEEEEEEEe
Confidence            9999999999999999999999885

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=3.9e-13  Score=127.56  Aligned_cols=164  Identities=18%  Similarity=0.246  Sum_probs=102.4

Q ss_pred             eeeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Eec-------CCCCeeEEee---CCeEEEEEccCCCCCCc
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PLL-------SSPKKREIFD---GENIILELKEADSETDA  627 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i~-------~~~~~~~~~~---~~~~~L~i~~~~~~~d~  627 (785)
                      ..+..+.+.+|++++|.|.+.+.+ +.+.|||.+  .   .+.       ...++....+   .+.++|+|.+++. +|+
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~-~D~   83 (207)
T 1ypz_E            6 QSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL-EDS   83 (207)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG-GGC
T ss_pred             ECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH-HHC
Confidence            344577899999999999998765 489999953  1   111       2345555544   5667899999999 999


Q ss_pred             eeEEEEEEcCCcc-----------eEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCc
Q psy2775         628 GDYKVVATNELGS-----------ATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVI  696 (785)
Q Consensus       628 G~Y~C~a~n~~g~-----------~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i  696 (785)
                      |.|.|.+.|..|.           ....+.|.|....                                   ....+|.+
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~-----------------------------------~~~~~P~v  128 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKS-----------------------------------QPPAKPSV  128 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCC-----------------------------------CCCCCCEE
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEccCC-----------------------------------CCCCCCeE
Confidence            9999999987531           1123456664100                                   00122332


Q ss_pred             CCCCCCcEEeecCCeEEEEEEEecC-CC-CceEEeECCEEeeecccc-ccchhhhcccccce-eeeeeceEEEEEEeccc
Q psy2775         697 DPPPPPEVLVKKGEDLKIEVRFKAL-PP-PKAEWTVNGTVIVPSKRV-KGKAEFIKKLDDLE-VKERENAVLEVEVTSDK  772 (785)
Q Consensus       697 ~~~~~~~~~~~~g~~~~l~C~~~g~-P~-p~i~W~~~~~~~~~~~~~-~~~~~~~~~l~~~~-v~~~~~~~~~c~~~~~~  772 (785)
                      .        +..+ .++|.|.+.|+ |. |.|+|+++ ..+...... ....+  ..+.... ....+.+.|+|.|.++.
T Consensus       129 ~--------~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~--g~y~~~~~~~~~~~~~ytC~v~~~~  196 (207)
T 1ypz_E          129 F--------IMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPS--GKYSAVKLGQYGDSNSVTCSVQHNS  196 (207)
T ss_dssp             E--------EEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTT--SSEEEEECEEESSTTTCEEEEEETT
T ss_pred             E--------EeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCC--CcEEEEEeecccCCCcEEEEEEECC
Confidence            2        2222 27999999985 54 79999999 777644221 11111  1122222 23356799999999876


Q ss_pred             cee
Q psy2775         773 ADV  775 (785)
Q Consensus       773 ~~~  775 (785)
                      .++
T Consensus       197 ~~~  199 (207)
T 1ypz_E          197 ETV  199 (207)
T ss_dssp             EEE
T ss_pred             ccE
Confidence            554

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=115.30  Aligned_cols=97  Identities=22%  Similarity=0.367  Sum_probs=83.1

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ...||.|...+..+.+.+|++++|.|.+.|.|.+.|.|++++..+.. ..++.+....+   ...+|+|.+++.+|+|.|
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y   81 (110)
T 2dm2_A            5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD---GTCSLHTTASTLDDDGNY   81 (110)
T ss_dssp             CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTT---CEEEEEESSCCTTTCSCC
T ss_pred             CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCC---cEEEEEECCCChhhCEEE
Confidence            35789999999999999999999999999999999999999998875 45555554422   125699999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEeC
Q psy2775          88 TVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      +|.|.|..|.....+.|.|..
T Consensus        82 ~C~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           82 TIMAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             EEEEECTTCCEEECCCEEEEC
T ss_pred             EEEEEECCCeEEEEEEEEEEC
Confidence            999999999998888888874

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.49  E-value=2.8e-13  Score=111.52  Aligned_cols=88  Identities=22%  Similarity=0.393  Sum_probs=78.9

Q ss_pred             CCCeEeeeeee-eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         557 QAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       557 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      .+|.|+..+.+ ..+.+|++++|.|.+. .|.|.+.|+|+|..+..+.++.+..++...+|.|.++.. +|+|.|+|.| 
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a-   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQM-TDDSEYYVTA-   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECT-TTCCEEEEEE-
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCc-CcCEEEEEEE-
Confidence            47899988887 6889999999999999 799999999999999888888888888888999999999 9999999999 


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                         |....++.|.|.
T Consensus        83 ---g~~~~~~~l~V~   94 (100)
T 2yuv_A           83 ---GDEKCSTELFVR   94 (100)
T ss_dssp             ---TTEEEEEEEEEC
T ss_pred             ---CCceEEEEEEEe
Confidence               777888888886

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=110.70  Aligned_cols=87  Identities=21%  Similarity=0.286  Sum_probs=78.1

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .|.|...+.+..+.+|++++|.|.+ +.|.+.+.|+|++..+..+.++.+..++...+|.|.++.. +|+|.|+|.|   
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a---   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGP-ADQGSYAVIA---   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCT-TCCSEEEEEE---
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCc-ccCEEEEEEE---
Confidence            4778888889999999999999999 8899999999999999888888888888888999999999 9999999999   


Q ss_pred             CcceEEEEEEEEE
Q psy2775         638 LGSATHGARVTVD  650 (785)
Q Consensus       638 ~g~~~~~~~l~V~  650 (785)
                       |....++.|.|.
T Consensus        83 -g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 -GSSKVKFDLKVI   94 (95)
T ss_dssp             -TTEEEEEEEEEE
T ss_pred             -CCceEEEEEEEe
Confidence             667777888775

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.48  E-value=4.7e-14  Score=117.42  Aligned_cols=95  Identities=19%  Similarity=0.362  Sum_probs=83.5

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ...+|.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....++.+.....    .++|.|.+++.+|+|.|+
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~   86 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY----KSTFEISSVQASDEGNYS   86 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSS----EEEEEECCCCSSCCSEEE
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCC----EEEEEECcCCchhCEEEE
Confidence            4578999999999999999999999999999999999999999888777777665432    257999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.....+.|.|.
T Consensus        87 C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           87 VVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             ECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEeCCCeEEEEEEEEEE
Confidence            9999999988888777774

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.48  E-value=1.3e-13  Score=112.27  Aligned_cols=89  Identities=17%  Similarity=0.300  Sum_probs=78.0

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ...||.|...+..+.+.+|++++|.|.+.|.| +.+.|++++..+....++.+.  +      ..|.|.+++.+|+|.|+
T Consensus         6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~------~~L~i~~~~~~D~G~Y~   76 (95)
T 2ckn_A            6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--G------EEVEVRDSIPADSGLYA   76 (95)
T ss_dssp             SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--S------SEEEESSCCGGGSEEEE
T ss_pred             CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--C------CEEEECCCChHHCEEEE
Confidence            35688999999999999999999999999987 799999999988877776554  1      25999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEE
Q psy2775          89 VVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v  106 (785)
                      |.|.|..|.....+.|.|
T Consensus        77 C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           77 CVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEeccCCCcEEEEEEEEE
Confidence            999999999888877776

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.48  E-value=5e-13  Score=122.28  Aligned_cols=163  Identities=12%  Similarity=0.088  Sum_probs=112.3

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      -.+...|....|.+|+++.|+|.+.. +.+ .+.|.-.-.      .... ..+.   ....+.|.+++ +|.+.|.|.+
T Consensus         3 f~v~v~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~------~~~~-~~g~---~~~~~~ls~vs-~d~~~~~C~~   70 (196)
T 3bn3_B            3 FWADLQPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLR------RNGT-QRGL---RWLARQLVDIR-EPETQPVCFF   70 (196)
T ss_dssp             SCEEEESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSE------EEEE-EEET---TEEEEEEEEEC-SSEECCEEEE
T ss_pred             cEEEEcCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccC------CeeE-cccc---CceEEEEEEEc-cCCCceEEEE
Confidence            34566788899999999999999864 444 677753211      0111 1111   11348899999 8888899999


Q ss_pred             EcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CCC--eEEEeECCEEcccceEEEeC-----
Q psy2775          92 KNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP--KVEWYKDGKLIKDRQITSEK-----  163 (785)
Q Consensus        92 ~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~--~v~W~~~g~~~~~~~~~~~~-----  163 (785)
                      ..........+.|.|+. .|..+.|...  ...+.+|+.++|+|.+.+. |..  +|+||++++.+.........     
T Consensus        71 ~c~~~~~~~~v~l~Vy~-~P~~v~i~~~--~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~  147 (196)
T 3bn3_B           71 RCARRTLQARGLIRTFQ-RPDRVELMPL--PPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARG  147 (196)
T ss_dssp             EETTEEEEEECEEEEEB-CCCCCEECCC--CSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCC
T ss_pred             ECCCCceEEEEEEEEec-CCCcCEEccC--CccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccc
Confidence            88777788888899885 2333444333  2347899999999999774 444  48999999998654321111     


Q ss_pred             CEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         164 NTHTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       164 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ...++++...+.+|...|+|+|.+..+
T Consensus       148 ~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          148 AVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             EEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             eeEEEEEeeeeccCCCeEEEEEEccCC
Confidence            235677777677777799999998765

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.47  E-value=4.8e-13  Score=111.85  Aligned_cols=98  Identities=11%  Similarity=0.140  Sum_probs=76.6

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCC---CeeEEEECCEEcc---CCCCEEEeec--CCccceEEEEEEcccCC
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPE---PDLLWYYNGEPLQ---ETDEVVFSDQ--SDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~---~~i~W~~~~~~~~---~~~~~~~~~~--~~~~~~~~~L~i~~~~~   81 (785)
                      +..|.|...|..+.+.+|++++|.|.+.|.|.   +.|.|+|++....   ...++.+...  .........|+|.+++.
T Consensus         2 ~p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   81 (108)
T 3cx2_A            2 DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP   81 (108)
T ss_dssp             CCCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCG
T ss_pred             CCccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCC
Confidence            46799999999999999999999999999988   9999999873221   1234443321  11122346799999999


Q ss_pred             CCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          82 REEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +|+|.|+|.|.|..|.....+.|.|.
T Consensus        82 ~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           82 AFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ccCEEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999999999888875

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.47  E-value=7.3e-13  Score=108.39  Aligned_cols=90  Identities=20%  Similarity=0.343  Sum_probs=78.9

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      .+...|.++.+.+|++++|.|.+.|. |.+.+.|++++..+....++.+...++    ..+|.|.+++.+|+|.|+|.|.
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~   78 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDG----VAILYVKDITKLDDGTYRCKVV   78 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETT----EEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCC----eEEEEEecCChhhCeEEEEEEE
Confidence            45677889999999999999999997 889999999999998888877655433    2569999999999999999999


Q ss_pred             cCCeeEEEEeeEEEe
Q psy2775          93 NREGEAKMDIPVKVN  107 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~  107 (785)
                      |..|.....+.|.|.
T Consensus        79 n~~g~~~~~~~l~V~   93 (97)
T 2bk8_A           79 NDYGEDSSYAELFVK   93 (97)
T ss_dssp             CSSCEEEEEEEEEET
T ss_pred             CCCCeEeEEEEEEEE
Confidence            999999888888885

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=3.3e-13  Score=111.46  Aligned_cols=89  Identities=20%  Similarity=0.323  Sum_probs=76.6

Q ss_pred             CCCCeEeeeeee-eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         556 GQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       556 ~~~p~~~~~~~~-~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      ..+|.|+..+.+ ..+.+|++++|.|.+ +.|.|.|.|+|+|..+..+ .++.+..++...+|.|.++.. +|+|.|+|.
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~   90 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL-ADDAAYQCV   90 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSS-SSCEEEEEE
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCc-ccCEEEEEE
Confidence            456888888877 889999999999999 7999999999999999877 677777778888999999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTVD  650 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~  650 (785)
                      |    |....++.|.|+
T Consensus        91 a----~~~~~~~~l~V~  103 (104)
T 1pd6_A           91 V----GGEKCSTELFVK  103 (104)
T ss_dssp             E----TTEEECCEEEEE
T ss_pred             E----CCCcEEEEEEEe
Confidence            9    445666777774

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.8e-14  Score=115.96  Aligned_cols=89  Identities=20%  Similarity=0.371  Sum_probs=77.1

Q ss_pred             CCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC----CeeEEeeCCeEEEEEccCCCCCCceeEE
Q psy2775         556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       556 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      ..+|.|...+.+..+.+|++++|.|.+.|.| |.+.|+|+|..+..+.    ++.+..++...+|.|.++.. +|+|.|+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~   83 (101)
T 2edk_A            6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQ-EDRGRYQ   83 (101)
T ss_dssp             CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCG-GGCSBEE
T ss_pred             cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCCh-hhCEEEE
Confidence            3468888888999999999999999999999 9999999999997776    55777777788999999999 9999999


Q ss_pred             EEEEcCCcceEEEEEEEEE
Q psy2775         632 VVATNELGSATHGARVTVD  650 (785)
Q Consensus       632 C~a~n~~g~~~~~~~l~V~  650 (785)
                      |.|.|    ...++.|.|.
T Consensus        84 C~a~n----~~~~~~l~V~   98 (101)
T 2edk_A           84 VITNG----GQCEAELIVE   98 (101)
T ss_dssp             EECSS----CEECCBEEEE
T ss_pred             EEEcC----CcEEEEEEEe
Confidence            99988    3455677775

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=114.94  Aligned_cols=85  Identities=21%  Similarity=0.363  Sum_probs=75.4

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.|...+.+..+.+|++++|.|.+.|.  |.+.|+|++..+..+.++.+..++....|.|.++.. +|+|.|+|.|    
T Consensus        20 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a----   92 (113)
T 2edh_A           20 IKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVA-EDAGEYLCMC----   92 (113)
T ss_dssp             CCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCS-TTCEEEEEEE----
T ss_pred             CcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCCh-hhCEEEEEEe----
Confidence            567777778899999999999999875  689999999999888888888888888999999999 9999999999    


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |....++.|.|.
T Consensus        93 ~~~~~~~~l~V~  104 (113)
T 2edh_A           93 GKERTSAMLTVR  104 (113)
T ss_dssp             TTEEEEEEEEEC
T ss_pred             CCCCEEEEEEEe
Confidence            777888888886

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.46  E-value=6.7e-13  Score=109.61  Aligned_cols=95  Identities=21%  Similarity=0.412  Sum_probs=75.4

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEe-ecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFS-DQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..||+|..-..   ...|+.+.|.|.+.|.|.|.++|++++..+..+.+.... ...+.....++|.|.+++.+|+|.|+
T Consensus         2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   78 (103)
T 1wwb_X            2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEE
Confidence            46788754322   356899999999999999999999999999877654222 11122334567999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.....+.|.|.
T Consensus        79 C~A~N~~G~~~~~~~l~V~   97 (103)
T 1wwb_X           79 LIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             EEEECSSCEEEEEEEECCS
T ss_pred             EEEEeCCCcEeEEEEEEEC
Confidence            9999999999998888886

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.46  E-value=7.2e-14  Score=117.20  Aligned_cols=91  Identities=24%  Similarity=0.399  Sum_probs=71.2

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      +|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+....+...  .....+|.|.++.. +|+|.|+|.|.|.
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~-~D~G~Y~C~a~n~   86 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRK-EDEGLYTCQACSV   86 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE--ETTTTEEEECSCCG-GGCEEEEEEEC--
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE--eCCCcEEEEeecCc-ccCEEEEEEEEeC
Confidence            58888888899999999999999999999999999999998876655433  34456799999999 9999999999999


Q ss_pred             CcceEEEEEEEEEe
Q psy2775         638 LGSATHGARVTVDV  651 (785)
Q Consensus       638 ~g~~~~~~~l~V~~  651 (785)
                      .|....++.|.|..
T Consensus        87 ~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           87 LGCAKVEAFFIIEG  100 (108)
T ss_dssp             --CEEEEEEEEEEC
T ss_pred             CCceEEEEEEEEeC
Confidence            99999999888873

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.3e-13  Score=112.16  Aligned_cols=91  Identities=20%  Similarity=0.347  Sum_probs=77.7

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..||.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+.. ..++.+...       .+|.|.+++.+|+|.|+
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-------~~L~i~~v~~~d~G~Y~   78 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ-------GTLQIKNLRISDTGTYT   78 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTT-------CCEEEESCCTTTCCEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCC-------CEEEEccCCcccCEEEE
Confidence            4689999999999999999999999999999999999999988764 333333222       24999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.....+.|.|.
T Consensus        79 C~a~n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           79 CVATSSSGETSWSAVLDVT   97 (100)
T ss_dssp             EEEECSSCCCBCCEEEEEE
T ss_pred             EEEEcCCCCEEEEEEEEEe
Confidence            9999999988888888886

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.46  E-value=2.2e-12  Score=117.11  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=107.1

Q ss_pred             CCceEeccCCcEEEEEEEeccCCC-eEEEeECCEEcccceE-EEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEE
Q psy2775         120 LHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQI-TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN  197 (785)
Q Consensus       120 ~~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  197 (785)
                      +....+.+|+++.|+|.+.. +.+ .+.|.-.   +..... ....+...|.|.+++. | |.|.|.+.......+..+.
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~---l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~   79 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETP---LPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTF   79 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECS-SSCSEEEEECS---SCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEECE
T ss_pred             CCCcEEeCCCCEEEEEEccC-CCCccceEEee---CCCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEEEE
Confidence            34567899999999999964 444 4777531   111111 1123346799999984 4 9999999776566777788


Q ss_pred             EEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEcc-CCCC--eEEEEECCE
Q psy2775         198 LNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP--KVEWYKDGK  274 (785)
Q Consensus       198 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~~--~v~W~~~~~  274 (785)
                      |.|...|                               ..+...+....+.+|+.++|.|.+.| .|.+  .|+|+++++
T Consensus        80 l~V~~~P-------------------------------~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~  128 (185)
T 1iam_A           80 LTVYWTP-------------------------------ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEK  128 (185)
T ss_dssp             EEEEBCC-------------------------------SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTE
T ss_pred             EEEeCCC-------------------------------CCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCE
Confidence            8887543                               12223333445889999999999977 4554  589999999


Q ss_pred             EcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCC
Q psy2775         275 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG  312 (785)
Q Consensus       275 ~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g  312 (785)
                      .+.......+..+.+|++.....+|...|+|+|.|..+
T Consensus       129 ~l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          129 ELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             EcccccCCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence            88633211223345788887777777799999998765

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=6.3e-13  Score=113.29  Aligned_cols=93  Identities=17%  Similarity=0.350  Sum_probs=78.2

Q ss_pred             CCCCeeee---cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          10 GIPPTFSK---KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        10 ~~~p~~~~---~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ..||.|..   .+..+.+.+|+++.|.|.+.|.|.+.+.|++++..+. ..++.+...++    .++|+|.+++.+|+|.
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~----~~~L~i~~~~~~D~G~   93 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDF----DTVFFVRQAARSDSGE   93 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSS----EEEEEESSCCTTTCEE
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCC----eEEEEECCCChhcCEE
Confidence            34788864   3678999999999999999999999999999999986 44555543332    2569999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEe
Q psy2775          87 YTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|.|..|.....+.|.|.
T Consensus        94 Y~C~a~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           94 YELSVQIENMKDTATIRIRVV  114 (118)
T ss_dssp             EEEEEECSSCEECCEEEEEEE
T ss_pred             EEEEEEeCCCeEEEEEEEEEE
Confidence            999999999988888888886

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.45  E-value=1.5e-13  Score=115.29  Aligned_cols=96  Identities=24%  Similarity=0.455  Sum_probs=72.3

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +....||.|...+..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+..+....      ++|.|.+++.+|+|.
T Consensus         5 v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~D~G~   78 (108)
T 3kvq_A            5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN------RNLTIRRVRKEDEGL   78 (108)
T ss_dssp             ------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTT------TEEEECSCCGGGCEE
T ss_pred             ECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCC------cEEEEeecCcccCEE
Confidence            44567999999999999999999999999999999999999999988777666554333      349999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEeC
Q psy2775          87 YTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      |+|.|.|..|.....+.|.|..
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           79 YTCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             EEEEEC----CEEEEEEEEEEC
T ss_pred             EEEEEEeCCCceEEEEEEEEeC
Confidence            9999999999998888888873

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=8.5e-13  Score=109.14  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=75.8

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC----------CeeEEeeCCeEEEEEccCCCCCC
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----------KKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~----------~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                      .+|.|...+++..+.+|++++|.|.+.+  .|.+.|||||++|..+.          ++.+..++..++|+|.++.. +|
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~-~D   83 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKH-QD   83 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCS-TT
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCH-HH
Confidence            3588999999999999999999999998  77899999999998876          66666677788999999999 99


Q ss_pred             ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         627 AGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|.|+|...+   ....++.|.|+
T Consensus        84 ~G~Y~~~~~~---~~~ssA~L~V~  104 (112)
T 2e6q_A           84 SGALVGFSCP---GVQDSAALTIQ  104 (112)
T ss_dssp             CSEEEEEEET---TEEEEEEEEEE
T ss_pred             CccEEEEEEC---CeeEEEEEEEe
Confidence            9999774443   45678899987

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.45  E-value=9.1e-13  Score=127.15  Aligned_cols=171  Identities=16%  Similarity=0.192  Sum_probs=109.2

Q ss_pred             CeEEecCCcEEEEEEEeCC---CceEEEEECC--E---Ec--------------ccCCCEEEEEeC--cEEEEEEccCCC
Q psy2775         424 DVKVSRDEKASFEIELTKG---DALVKWYKDG--K---EI--------------AFSENVTLSIDG--KKQKLIIFSAGL  479 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~---~~--------------~~~~~~~~~~~~--~~~~L~i~~~~~  479 (785)
                      .+.+.+|++++|.|.+.+.   ...+.|++..  .   .+              ...+++.+..+.  ....|+|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            5678899999999999762   4579999832  1   11              012455555443  467899999999


Q ss_pred             CCcEEEEEEEeecC-c---------ceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccc
Q psy2775         480 EDAGEYSCRVGDTG-D---------KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT  549 (785)
Q Consensus       480 ~d~G~Y~C~a~n~g-~---------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  549 (785)
                      +|+|.|.|.+.+.+ .         -.....|.|...+                                          
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~------------------------------------------  126 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT------------------------------------------  126 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC------------------------------------------
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC------------------------------------------
Confidence            99999999998742 0         0112345554321                                          


Q ss_pred             cCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-C-CCceEEEeCCEEecCCCCe--eEEeeCC----eEEEEEccC
Q psy2775         550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKK--REIFDGE----NIILELKEA  621 (785)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P-~p~v~W~~~~~~i~~~~~~--~~~~~~~----~~~L~i~~~  621 (785)
                            ..+|.+........+.+|+.++|.|.+.|. | .+.+.|  ++..+..+...  .....++    .+.|.|...
T Consensus       127 ------~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~  198 (226)
T 3mlr_H          127 ------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSS  198 (226)
T ss_dssp             ------CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGG
T ss_pred             ------CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHh
Confidence                  112444433334456689999999999985 5 347999  44333221100  0111112    246889988


Q ss_pred             CCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         622 DSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      .. +| |.|+|.|.|..+.......
T Consensus       199 ~~-~~-~~ytC~v~h~~~~~~~~~~  221 (226)
T 3mlr_H          199 SL-GT-QTYICNVNHKPSNTKVDKK  221 (226)
T ss_dssp             GT-TT-CCCEEEEEEGGGTEEEEEE
T ss_pred             Hc-CC-CeEEEEEEECCCCcCeEEE
Confidence            87 78 9999999999887655443

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2e-13  Score=115.64  Aligned_cols=98  Identities=16%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             CcccccccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeec-CCccceEEEEEEcccC
Q psy2775           2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQ-SDMHSYVSIVTIKSIK   80 (785)
Q Consensus         2 ~s~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~~~   80 (785)
                      |+....+.+.|+.|...+.++.+.+|++++|.|.+.|.|.+.+.|++++..+..+.++.+... ++.    .+|+|.+++
T Consensus         3 s~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~----~~L~I~~v~   78 (115)
T 2cr6_A            3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY----HVLTLRQLA   78 (115)
T ss_dssp             CCCCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTB----CCBEECSCC
T ss_pred             ccEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCE----EEEEEcCCC
Confidence            344445555566899999999999999999999999999999999999999887776655422 222    349999999


Q ss_pred             CCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          81 KREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      .+|+|.|+|.+    |.....+.|.|.
T Consensus        79 ~~D~G~Y~C~~----g~~~~~~~L~V~  101 (115)
T 2cr6_A           79 LKDSGTIYFEA----GDQRASAALRVT  101 (115)
T ss_dssp             TTTCEEEEEEE----TTEECCEEEEEE
T ss_pred             hhhCEEEEEEE----CCeeEEEEEEEE
Confidence            99999999994    445566778887

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.44  E-value=5e-13  Score=132.53  Aligned_cols=178  Identities=13%  Similarity=0.241  Sum_probs=113.1

Q ss_pred             cCCceEecCCCeEEEEEEEEe--cCCCeeEEEECC--E---Ec---cC-----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVA--VPEPDLLWYYNG--E---PL---QE-----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g--~p~~~i~W~~~~--~---~~---~~-----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+..+.+.+|++|+|.|.+.+  .....+.||+..  .   .+   ..           ..|+.+..+..  ....+|+|
T Consensus        29 q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I  106 (267)
T 3u1s_H           29 QSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSG--ASTVYMEL  106 (267)
T ss_dssp             ECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGG--GCCEEEEE
T ss_pred             eeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCC--CCEEEEEE
Confidence            344688999999999999965  244689999842  1   11   00           13444433322  12356999


Q ss_pred             cccCCCCCeEEEEEEEcC------Ce------------e-------EEEEeeEEEeCCCCCCCceecCCCceEeccCCcE
Q psy2775          77 KSIKKREEGVYTVVAKNR------EG------------E-------AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA  131 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~------~~------------~-------~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v  131 (785)
                      .+++.+|+|.|.|.+.+.      .+            .       -.....|.|....+.+|.+...........|+.+
T Consensus       107 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~  186 (267)
T 3u1s_H          107 RGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTA  186 (267)
T ss_dssp             CSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEE
T ss_pred             CCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcE
Confidence            999999999999999621      11            1       1113456675445566776632233334579999


Q ss_pred             EEEEEEec-cC-CCeEEEeECCEEcccce-----EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         132 VLSVQVGG-EP-SPKVEWYKDGKLIKDRQ-----ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       132 ~l~C~~~g-~p-~~~v~W~~~g~~~~~~~-----~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      .|.|.+.+ .| ++.++|  +|..+....     ....++    .+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus       187 ~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~  263 (267)
T 3u1s_H          187 ALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  263 (267)
T ss_dssp             EEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence            99999987 45 458999  665543221     111111    2468888888888 9999999998765554444433

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.8e-13  Score=114.83  Aligned_cols=89  Identities=20%  Similarity=0.325  Sum_probs=77.3

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEE-eeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~-~~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      .++.|...+.+..+.+|++++|.|.+.|.|.|.+.|+|+|..+..+.++.+. .++...+|.|.++.. +|+|.|+|.+ 
T Consensus        12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~-   89 (115)
T 2cr6_A           12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLAL-KDSGTIYFEA-   89 (115)
T ss_dssp             SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCT-TTCEEEEEEE-
T ss_pred             CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCCh-hhCEEEEEEE-
Confidence            3468888889999999999999999999999999999999999887776555 336667899999999 9999999994 


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                         |....++.|.|.
T Consensus        90 ---g~~~~~~~L~V~  101 (115)
T 2cr6_A           90 ---GDQRASAALRVT  101 (115)
T ss_dssp             ---TTEECCEEEEEE
T ss_pred             ---CCeeEEEEEEEE
Confidence               777788888887

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.43  E-value=7.5e-13  Score=130.58  Aligned_cols=175  Identities=16%  Similarity=0.216  Sum_probs=110.2

Q ss_pred             CeEEecCCcEEEEEEEeCC---CceEEEEECC--EE---c--------------ccCCCEEEEEeC--cEEEEEEccCCC
Q psy2775         424 DVKVSRDEKASFEIELTKG---DALVKWYKDG--KE---I--------------AFSENVTLSIDG--KKQKLIIFSAGL  479 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~---~--------------~~~~~~~~~~~~--~~~~L~i~~~~~  479 (785)
                      ...+.+|++++|.|.+.+.   ...+.|++..  ..   +              ...+++.+..+.  ....|+|.+++.
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA  111 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence            4568899999999999762   4579999732  11   1              012456655443  467799999999


Q ss_pred             CCcEEEEEEEeecC------------cceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccc
Q psy2775         480 EDAGEYSCRVGDTG------------DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIV  547 (785)
Q Consensus       480 ~d~G~Y~C~a~n~g------------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  547 (785)
                      +|+|.|.|.+.+.+            .......|.|...+.                                       
T Consensus       112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~---------------------------------------  152 (256)
T 3sob_H          112 EDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAST---------------------------------------  152 (256)
T ss_dssp             GGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCC---------------------------------------
T ss_pred             ccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCC---------------------------------------
Confidence            99999999998742            112234566653210                                       


Q ss_pred             cccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCe--eEEeeCC----eEEEEEc
Q psy2775         548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK--REIFDGE----NIILELK  619 (785)
Q Consensus       548 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~--~~~~~~~----~~~L~i~  619 (785)
                               .+|.+........+.+|+.++|.|.+.|. |. +.+.|  ++..+..+...  .....++    .+.|.|.
T Consensus       153 ---------~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~  221 (256)
T 3sob_H          153 ---------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVP  221 (256)
T ss_dssp             ---------BCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEE
T ss_pred             ---------CCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEEC
Confidence                     11444322223356789999999999984 53 47999  55444321110  0111112    2468899


Q ss_pred             cCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         620 EADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      .... +| |.|+|.|.|..+.......|.+.
T Consensus       222 ~~~~-~d-~~ytC~v~~~~~~~~~~~~~~~~  250 (256)
T 3sob_H          222 SSSL-GT-QTYICNVNHKPSNTKVDKKVEPK  250 (256)
T ss_dssp             GGGT-TT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             HHHc-CC-ceEEEEEEeCCCCcceEEEeccc
Confidence            8887 88 99999999999887776666554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.43  E-value=5e-13  Score=107.78  Aligned_cols=83  Identities=19%  Similarity=0.286  Sum_probs=70.2

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      ++.|...+....+.+|+.++|.|.+.|+|.|.+.|+|++..+....         ...|.|.++.. +|+|.|+|.|.|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~---------~~~L~i~~v~~-~d~G~Y~C~a~n~   72 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET---------KKLYMVPYVDL-EHQGTYWCHVYND   72 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC---------SSEEEESSCCG-GGCEEEEEEEECS
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC---------CCeEEECCCCH-HhCEEEEEEEEcC
Confidence            3677777888899999999999999999999999999999886543         24799999999 9999999999999


Q ss_pred             CcceE-EEEEEEEE
Q psy2775         638 LGSAT-HGARVTVD  650 (785)
Q Consensus       638 ~g~~~-~~~~l~V~  650 (785)
                      .|... ..+.|.|.
T Consensus        73 ~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           73 RDSQDSKKVEIIID   86 (91)
T ss_dssp             SCEEECCCEEEEEC
T ss_pred             CCCEEeeeEEEEEe
Confidence            99755 33555554

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.43  E-value=1.4e-12  Score=109.54  Aligned_cols=94  Identities=21%  Similarity=0.295  Sum_probs=74.6

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecC---CccceEEEEEEcccCCCCCeE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS---DMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ..||+|.. ..   ...+..+.|.|.+.|.|.|.|+|+|||..|..+.+.......   +.....++|.|.+++.+|+|.
T Consensus         2 ~~pP~I~l-~~---~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (126)
T 1he7_A            2 HMPASVQL-HT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (126)
T ss_dssp             CCCCCCCC-CC---CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             CCCCEEEc-cC---CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEE
Confidence            35788722 22   347889999999999999999999999999888776443222   112234679999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEe
Q psy2775          87 YTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|.|..|.+..++.|.|.
T Consensus        78 YtC~A~N~~G~~~~t~~l~v~   98 (126)
T 1he7_A           78 YTLLAANPFGQASASIMAAFM   98 (126)
T ss_dssp             EEEEEEETTEEEEEEEEECCC
T ss_pred             EEEEEEECCCeEEEEEEEEEE
Confidence            999999999999888888776

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.43  E-value=1.4e-12  Score=110.18  Aligned_cols=95  Identities=17%  Similarity=0.325  Sum_probs=78.4

Q ss_pred             cccccccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCC
Q psy2775           3 SLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus         3 s~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      +....+.+.||.|...+..+.+.+|++++|.|.+.+.  +.+.|++++..+..+.++.+..++..    ..|+|.+++.+
T Consensus        10 ~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~----~~L~I~~v~~~   83 (113)
T 2edh_A           10 SAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGAR----CELQIRGLVAE   83 (113)
T ss_dssp             CCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTE----EEEEECSCCST
T ss_pred             EEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCE----EEEEECCCChh
Confidence            3444555678899999999999999999999999764  67999999999988888877765532    46999999999


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|+|.|    +.....+.|.|.
T Consensus        84 D~G~Y~C~a----~~~~~~~~l~V~  104 (113)
T 2edh_A           84 DAGEYLCMC----GKERTSAMLTVR  104 (113)
T ss_dssp             TCEEEEEEE----TTEEEEEEEEEC
T ss_pred             hCEEEEEEe----CCCCEEEEEEEe
Confidence            999999999    445666777776

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-13  Score=112.20  Aligned_cols=94  Identities=12%  Similarity=0.151  Sum_probs=78.7

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEecCC-CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      .+.+.||.|...+.++.+.+|++++|.|.+.+.|. +.+.|++++..+..+.++.+..++..    .+|+|.+++.+|+|
T Consensus         3 ~V~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~----~~L~I~~v~~~D~G   78 (104)
T 2eny_A            3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRK----YILVVREAAPSDAG   78 (104)
T ss_dssp             CCCCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTE----EEEEECSCCTTTCS
T ss_pred             ccccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCE----EEEEECCCCHHHCE
Confidence            46678899999999999999999999999988764 47999999999988888777665543    46999999999999


Q ss_pred             EEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          86 VYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      .|+|.|.|    ....+.|.|..
T Consensus        79 ~Y~C~a~~----~~~~a~L~V~~   97 (104)
T 2eny_A           79 EVVFSVRG----LTSKASLIVRE   97 (104)
T ss_dssp             CEEEEETT----EEEEECEEEEC
T ss_pred             EEEEEECC----eeEEEEEEEeC
Confidence            99999865    34667777763

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.3e-12  Score=108.23  Aligned_cols=89  Identities=17%  Similarity=0.269  Sum_probs=73.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      .|+.|...+.++.+.+|++++|.|.+.+ |.+.+.|++++..+....  ++.+..++.    ..+|+|.+++.+|+|.|+
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~   80 (103)
T 1x44_A            6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK----KHILIIEGATKADAAEYS   80 (103)
T ss_dssp             SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETT----EEEEEEEEECTTTCSEEE
T ss_pred             CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCC----EEEEEECCCCcccCEEEE
Confidence            4555899999999999999999999977 778999999999998777  556665443    256999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEeC
Q psy2775          89 VVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~~  108 (785)
                      |.|.|    ....+.|.|..
T Consensus        81 C~a~n----~~~~~~l~V~~   96 (103)
T 1x44_A           81 VMTTG----GQSSAKLSVDL   96 (103)
T ss_dssp             EEETT----EEEEEEEEEEC
T ss_pred             EEECC----CcEEEEEEEeC
Confidence            99987    35556677763

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=7.4e-13  Score=109.77  Aligned_cols=91  Identities=13%  Similarity=0.268  Sum_probs=77.7

Q ss_pred             ccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775           8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus         8 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      -.+.||.|...+..+.+.+|++++|.|.+.+ |.+.+.|++++..+....++.+..++.    ...|+|.+++.+|+|.|
T Consensus         4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y   78 (103)
T 2edf_A            4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGT----MAMLVIRGASLKDAGEY   78 (103)
T ss_dssp             SCCCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETT----EEEEEESSCCTTTCSEE
T ss_pred             CCCCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCC----EEEEEECCCCcccCEEE
Confidence            3568999999999999999999999999987 778899999999998888877766544    25699999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEe
Q psy2775          88 TVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +|.|.|.    ...+.|.|.
T Consensus        79 ~C~a~n~----~~~~~l~V~   94 (103)
T 2edf_A           79 TCEVEAS----KSTASLHVE   94 (103)
T ss_dssp             EEECSSC----EEEEEEEEC
T ss_pred             EEEEccC----CcEEEEEEe
Confidence            9999992    455667775

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.41  E-value=7.8e-13  Score=109.61  Aligned_cols=88  Identities=25%  Similarity=0.364  Sum_probs=79.0

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|.|...+.+..+.+|++++|.|.+.|.|.| +.|+|++..+..+.++.+..++...+|.|.+++. +|+|.|+|.   
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~---   81 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRP-QDSGRYSCS---   81 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCT-TTCCCEEEE---
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCc-ccCEEEEEE---
Confidence            46888888889999999999999999999999 9999999999878888888888888999999999 999999998   


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                       .|....++.|.|.
T Consensus        82 -~g~~~~~~~l~V~   94 (103)
T 2e7b_A           82 -FGDQTTSATLTVT   94 (103)
T ss_dssp             -CSSCBCCBCEEEE
T ss_pred             -ECCcEEEEEEEEE
Confidence             5667777888886

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.40  E-value=7.5e-13  Score=109.09  Aligned_cols=91  Identities=18%  Similarity=0.313  Sum_probs=74.3

Q ss_pred             CCCCeeeecC----CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCC---EEEeecCCccceEEEEEEcccCCC
Q psy2775          10 GIPPTFSKKT----KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE---VVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        10 ~~~p~~~~~~----~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      +.||.|...|    ..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+   .......      ++|+|.+++.+
T Consensus         2 ~~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~   75 (100)
T 3caf_A            2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH------WSLIMESVVPS   75 (100)
T ss_dssp             CEEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG------TEEEECSCCGG
T ss_pred             CCCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCe------EEEEEccCCcC
Confidence            4578888654    578899999999999999999999999999998865433   2222111      35999999999


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+|.|+|.|.|..|.....+.|.|
T Consensus        76 D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           76 DKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEEeCCCEEEEEEEEEE
Confidence            999999999999999888877776

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.40  E-value=5.5e-13  Score=111.14  Aligned_cols=92  Identities=12%  Similarity=0.226  Sum_probs=77.2

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ...||.|...+.++.+.+|++++|.|.+.+.|.+ +.|++++..+....++.+..++..    .+|.|.+++.+|+|.|+
T Consensus         5 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~   79 (106)
T 2dlt_A            5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRF----HKLVIDDVRPEDEGDYT   79 (106)
T ss_dssp             SCCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTE----EEEEESSCCTTTCSCEE
T ss_pred             CCCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCE----EEEEECCCCcCCCEEEE
Confidence            4578999999999999999999999999988877 999999999988877777655432    46999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|.  .....+.|.|.
T Consensus        80 C~a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           80 FVPDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             EEEETS--CCCCCBCEEEE
T ss_pred             EEEccC--CceEEEEEEEE
Confidence            999998  33345556654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.40  E-value=3.6e-13  Score=114.71  Aligned_cols=93  Identities=25%  Similarity=0.432  Sum_probs=71.3

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCC----eeEEe-eCCeEEEEEc--cCCCCCCcee
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK----KREIF-DGENIILELK--EADSETDAGD  629 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~----~~~~~-~~~~~~L~i~--~~~~~~d~G~  629 (785)
                      .+|.|...+....+.+|++++|.|.+.|+|.|.|.|+|++..+.....    ..... ++....|.|.  +++. +|+|.
T Consensus         8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~-~D~G~   86 (117)
T 2v9t_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSR-PDEGV   86 (117)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBC-SSCEE
T ss_pred             CCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCc-CcCEE
Confidence            368898888899999999999999999999999999999999875431    12222 2332233332  5677 99999


Q ss_pred             EEEEEEcCCcceEEE-EEEEEE
Q psy2775         630 YKVVATNELGSATHG-ARVTVD  650 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~-~~l~V~  650 (785)
                      |+|.|.|..|...+. +.|.|.
T Consensus        87 Y~C~a~N~~G~~~s~~~~l~~~  108 (117)
T 2v9t_A           87 YVCVARNYLGEAVSHDASLEVA  108 (117)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEeCccceEeeeEEEEhh
Confidence            999999999987664 566665

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.40  E-value=1.3e-13  Score=118.49  Aligned_cols=103  Identities=20%  Similarity=0.292  Sum_probs=83.7

Q ss_pred             cccccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccC--CCCEEEeecCCccceEEEEEEcccCC
Q psy2775           5 ADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQE--TDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus         5 ~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      ..|.+..||.|.. +..+.+.+|+++.|.|.+.|.|.|. |.|++++..+..  ..++.+..........++|+|.+++.
T Consensus         7 ~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (122)
T 2cry_A            7 GTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   85 (122)
T ss_dssp             CCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             EEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCCh
Confidence            4567778999998 8999999999999999999999987 999999988865  35555532111112246799999999


Q ss_pred             CCC-eEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          82 REE-GVYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        82 ~D~-G~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      +|. |.|+|.|.|..|.....+.|.|..
T Consensus        86 ~D~~G~Y~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           86 ADFQTIYNCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             HHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             hhCCceEEEEEECCCCeEEEEEEEEECC
Confidence            999 999999999999998888887764

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=2.9e-12  Score=123.11  Aligned_cols=165  Identities=13%  Similarity=0.158  Sum_probs=102.8

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--E---Ecc---------CCCCEEEeecCCccceEEEEEEcc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--E---PLQ---------ETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~---~~~---------~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      +...|..+.+.+|++++|.|.+.+.+  ...+.||+..  .   .+.         ...|+.+..+.  ......|+|.+
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~   81 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDI--AKNLAVLKILA   81 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEG--GGTEEEEEESS
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcC--CCCEEEEEECc
Confidence            55678889999999999999997654  3679999853  1   110         12344444321  12235699999


Q ss_pred             cCCCCCeEEEEEEEcCC------ee--EEEEeeEEEeCC--CCCCCceecCCCceEeccCCcEEEEEEEecc-CCC-eEE
Q psy2775          79 IKKREEGVYTVVAKNRE------GE--AKMDIPVKVNTG--KPEKPSILEPLHDVSITEGESAVLSVQVGGE-PSP-KVE  146 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~------~~--~~~~~~v~v~~~--~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~~-~v~  146 (785)
                      ++.+|+|.|.|.+.+..      +.  -.....|.|...  .+.+|.+...       . ..+.|.|.+.|. |.+ .|+
T Consensus        82 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~-------~-~~~~L~C~~~g~~P~~i~v~  153 (229)
T 1hxm_A           82 PSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM-------K-NGTNVACLVKEFYPKDIRIN  153 (229)
T ss_dssp             CCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE-------E-ETTEEEEEEESCBSSCCEEE
T ss_pred             CCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc-------C-CCCeEEEEEEEEeCCCEEEE
Confidence            99999999999998763      11  112235666531  2234443321       1 124899999885 443 899


Q ss_pred             EeECCEEcccce-EEEeCCEEEEEEccc-CCCCcEEEEEEEEcCCe
Q psy2775         147 WYKDGKLIKDRQ-ITSEKNTHTLTLIQC-STKDKGRYSVKVTNKEG  190 (785)
Q Consensus       147 W~~~g~~~~~~~-~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g  190 (785)
                      |+++ ..+.... ........++.+... ..+|.|.|+|.|.|..+
T Consensus       154 W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          154 LVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             EECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             EecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence            9999 6664321 111111123333333 33788999999999864

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.39  E-value=4.2e-12  Score=128.83  Aligned_cols=169  Identities=17%  Similarity=0.232  Sum_probs=110.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--------------CCeeEEEEC--CE--E-c--cCC----------CCEEEeec-
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--------------EPDLLWYYN--GE--P-L--QET----------DEVVFSDQ-   64 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--------------~~~i~W~~~--~~--~-~--~~~----------~~~~~~~~-   64 (785)
                      .++..+.+.+|++++|.|..+..+              ...+.||+.  ++  . +  ..+          .+..+... 
T Consensus       163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~  242 (401)
T 3f8u_B          163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWD  242 (401)
T ss_dssp             ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEES
T ss_pred             CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeec
Confidence            356789999999999999986443              357899974  32  1 1  111          11122111 


Q ss_pred             -C---CccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceE-eccCC-cEEEEEEEe
Q psy2775          65 -S---DMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS-ITEGE-SAVLSVQVG  138 (785)
Q Consensus        65 -~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~-~~~G~-~v~l~C~~~  138 (785)
                       +   +......+|+|.+++.+|+|.|.|.+.+..+.....+.|.|.    .+|.+...+.... +..|+ .++|.|.+.
T Consensus       243 ~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~----~pP~V~v~p~~~~~~~~G~~~vtL~C~a~  318 (401)
T 3f8u_B          243 DDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY----KPPKVSLMPATLARAAPGEAPPELLCLVS  318 (401)
T ss_dssp             CCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE----BCCEEEEESSSCCCCCTTCCCCCEEEEEE
T ss_pred             ccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeec----cCCeEeeccCcceeecCCCccEEEEEEec
Confidence             1   123356789999999999999999999988877777888887    4677765544433 45676 799999998


Q ss_pred             cc-CC--CeEEEe-ECCE-----Eccc-----ceEEEeCC----EEEEEEcccCC-CCcEEEEEEEEcCC
Q psy2775         139 GE-PS--PKVEWY-KDGK-----LIKD-----RQITSEKN----THTLTLIQCST-KDKGRYSVKVTNKE  189 (785)
Q Consensus       139 g~-p~--~~v~W~-~~g~-----~~~~-----~~~~~~~~----~~~L~i~~~~~-~d~G~Y~C~a~n~~  189 (785)
                      |. |.  +.|+|+ +|+.     ....     ......++    .+.|.+...+. ++.+.|+|++.|..
T Consensus       319 GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          319 HFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             CCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            85 55  689995 8752     1111     01111122    23455554432 34569999999876

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.4e-13  Score=111.25  Aligned_cols=92  Identities=15%  Similarity=0.264  Sum_probs=75.7

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC----CEEEeecCCccceEEEEEEcccCCC
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD----EVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      .+.+.||.|...+.++.+.+|++++|.|.+.+.| +.+.|++++..+....    ++.+..++.    ...|+|.+++.+
T Consensus         3 sv~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~   77 (101)
T 2edk_A            3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGK----RHILIFSDVVQE   77 (101)
T ss_dssp             SSCCCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSS----EEEEECSSCCGG
T ss_pred             ccccCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCC----EEEEEECCCChh
Confidence            3567899999999999999999999999999888 8999999999887766    456655443    256999999999


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|+|.|.|    ....+.|.|.
T Consensus        78 D~G~Y~C~a~n----~~~~~~l~V~   98 (101)
T 2edk_A           78 DRGRYQVITNG----GQCEAELIVE   98 (101)
T ss_dssp             GCSBEEEECSS----CEECCBEEEE
T ss_pred             hCEEEEEEEcC----CcEEEEEEEe
Confidence            99999999987    2344556665

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.39  E-value=2e-12  Score=104.18  Aligned_cols=84  Identities=14%  Similarity=0.263  Sum_probs=72.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .++.|...|..+.+.+|++++|.|.+.|.|.+.+.|++++..+....+             ..|.|.+++.+|+|.|+|.
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~   68 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-------------KLYMVPYVDLEHQGTYWCH   68 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS-------------SEEEESSCCGGGCEEEEEE
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC-------------CeEEECCCCHHhCEEEEEE
Confidence            578899999999999999999999999999999999999988765432             2499999999999999999


Q ss_pred             EEcCCeeEE-EEeeEEEe
Q psy2775          91 AKNREGEAK-MDIPVKVN  107 (785)
Q Consensus        91 a~~~~~~~~-~~~~v~v~  107 (785)
                      |.|..|... ..+.|.|.
T Consensus        69 a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           69 VYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             EECSSCEEECCCEEEEEC
T ss_pred             EEcCCCCEEeeeEEEEEe
Confidence            999998654 34556653

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2e-12  Score=107.13  Aligned_cols=88  Identities=26%  Similarity=0.406  Sum_probs=78.4

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+|.|...+.+..+.+|++++|.|. .|.|.|.|.|+|++..+..+.++.+..++....|.|.++.. +|+|.|+|.   
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~---   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEK-ADSDTYTCD---   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCT-TTCSEEEEE---
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCc-ccCEEEEEE---
Confidence            4688888889999999999999999 48999999999999999888888777778888999999999 999999998   


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                       .|....++.|.|.
T Consensus        82 -~g~~~~~~~l~V~   94 (103)
T 2dku_A           82 -IGQAQSRAQLLVQ   94 (103)
T ss_dssp             -CSSCBCCEEEEEE
T ss_pred             -eCCceEEEEEEEe
Confidence             6777777888876

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=4.2e-12  Score=107.23  Aligned_cols=87  Identities=16%  Similarity=0.194  Sum_probs=72.0

Q ss_pred             CCeEeeeeee---eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         558 APLFIERFEE---KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       558 ~p~~~~~~~~---~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +|.++..+..   ..+.+|++++|.|.+. .|.+.+.|+|+|..+..+.++.+...+...+|.|.++.. +|+|.|+|.|
T Consensus        10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a   87 (113)
T 2cpc_A           10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQL-EDSGEYLCEI   87 (113)
T ss_dssp             CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCT-TTCEEEEEES
T ss_pred             CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCc-ccCEEEEEEE
Confidence            4555544433   6788999999999995 899999999999999888777777777778999999999 9999999999


Q ss_pred             EcCCcceEEEEEEEEE
Q psy2775         635 TNELGSATHGARVTVD  650 (785)
Q Consensus       635 ~n~~g~~~~~~~l~V~  650 (785)
                      .|    ...++.|.|.
T Consensus        88 ~n----~~~~~~l~V~   99 (113)
T 2cpc_A           88 DD----ESASFTVTVT   99 (113)
T ss_dssp             SS----CEEEEEEEEE
T ss_pred             ec----CcEEEEEEEe
Confidence            99    4556667765

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.9e-13  Score=109.72  Aligned_cols=81  Identities=25%  Similarity=0.350  Sum_probs=67.9

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      .+....+.+|+.++|.|.+.|.| |.|.|+|++..+....+..+.    ..+|.|.++.. +|+|.|+|.|.|..|....
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~   82 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVP-ADSGLYACVTSSPSGSDTT   82 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCT-TTCEEEEEEEEETTEEEEE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCH-HHCEEEEEEEEeCCceEEE
Confidence            34577899999999999999987 799999999988766554332    34799999999 9999999999999998877


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      ++.|.|.
T Consensus        83 ~~~l~V~   89 (99)
T 2cr3_A           83 YFSVNVS   89 (99)
T ss_dssp             EEEECBC
T ss_pred             EEEEEEe
Confidence            7766665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	785
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-17
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-16
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-15
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-07
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-16
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-15
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-12
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-07
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-12
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	4e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-10
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-13
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-13
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-07
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-05
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	6e-13
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-09
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-08
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-08
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.001
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-12
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-10
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-10
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-10
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-06
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-10
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-09
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.002
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.003
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-12
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-12
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	9e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	6e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	9e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	0.002
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-11
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-12
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	0.004
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	6e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	6e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	6e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.001
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	5e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-09
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-09
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	7e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-08
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	6e-09
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-06
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	9e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.003
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	4e-08
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	4e-08
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	6e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-08
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-08
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.003
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	8e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	8e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	4e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.004
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.001
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-07
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-07
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	3e-06
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.003
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	8e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	8e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	8e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	9e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-06
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	4e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	4e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.004
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-05
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-06
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.004
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	9e-06
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	9e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	4e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	2e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	2e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	5e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	3e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	3e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	3e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	9e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	3e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	8e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	8e-04
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	6e-04
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	0.001
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	0.001
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.002
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.002
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.004

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 7e-17
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHT 289
           E P I E +   ++ +G  A   V+V G+P P+ EWYK+G  I    +      E N   
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGK 326
           L +   + +D     VK  N  G   S A L V Q K
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV-QAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 2e-16
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHT 167
           E P I E +   ++ +G  A   V+V G+P P+ EWYK+G  I    +      E N   
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP 202
           L +   + +D     VK  N  G   S A L V  
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 7e-15
 Identities = 20/93 (21%), Positives = 37/93 (39%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
           +AP   ER + +TV +        +V   P P   W++N   +  S +    +  +N+  
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +    +  D+    V A N  G  +  A + V
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            P   ++ +     + S+    VR+V  P+P+  WY NG  ++ +D + +    D     
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE- 62

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             + I+ +   +     V A N  GE      + V
Sbjct: 63  --LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI- 385
           +  +++    V +  +A   V V      + +W+K+G +I+ S ++           L+ 
Sbjct: 6   KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 65

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNV 411
           R+++  D             +  + A L V
Sbjct: 66  RDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVT-LSIDGKKQKL 472
            P+I   +Q   V +   A F + +  K D   +WYK+G +I  S+ +     +    +L
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 473 IIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEA 505
           +I     ED+     +  +  G+  S A L V+A
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 12/106 (11%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTL 170
           P I++   D  +  GES  L  +V G       W K  K I++    ++ + +N   LT+
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
           +    +  G Y++ V NK G+ ++  NL V            P PP
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTV---------VDKPDPP 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTL 292
           P I++   D  +  GES  L  +V G       W K  K I++    ++ + +N   LT+
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           +    +  G Y++ V NK G+ ++  NL V
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 4e-14
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P  I+  E++ V+   ++ L  KV  +   +  W +  K +  S   +         L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 657
             A  E   G Y ++  N+LGS      +TV V+K   P
Sbjct: 61  LAARQE-HCGCYTLLVENKLGSRQAQVNLTV-VDKPDPP 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 6e-13
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
           P   +  +         V L  ++         W    + +QE++ +   +  +      
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL-- 58

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             TI + ++   G YT++ +N+ G  +  + + V   KP+ P+
Sbjct: 59  --TILAARQEHCGCYTLLVENKLGSRQAQVNLTV-VDKPDPPA 98

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
           + I+  +D +V+  E+  L  +VT        W K  ++I+ S+ + +E      KL I 
Sbjct: 2   QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTIL 61

Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELP 415
                  G YT      L  ++    L VV+ P
Sbjct: 62  AARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
           P+I    +D KV   E      ++T        W K  K+I  SE++ +       KL I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTVEAP 506
            +A  E  G Y+  V    G ++++  LTV   
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 8e-15
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 558 APLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
           AP +   E+ E++   V    T++       +P P++ W +N K      +         
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
               + E+   +D G+Y  V  NE GS  H   + V
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTL 168
               +E     ++    +       GG P P + W K+GK  K               +L
Sbjct: 6   NTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 64

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            +      DKG Y+  V N+ G++    +L+V
Sbjct: 65  IMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTL 290
               +E     ++    +       GG P P + W K+GK  K               +L
Sbjct: 6   NTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 64

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            +      DKG Y+  V N+ G++    +L+V
Sbjct: 65  IMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 9e-09
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
                K+   V     + V         P P + W  NG+  ++   +      + H   
Sbjct: 7   TEKMEKRLHAV--PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW-- 62

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             + ++S+   ++G YT V +N  G       + V
Sbjct: 63  -SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 338 VKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGE 395
           V              +    ++W K+G+E K   ++   K +     L++ ++   D+G 
Sbjct: 17  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 76

Query: 396 YTC----SLPDQETSAELNVV 412
           YTC           +  L+VV
Sbjct: 77  YTCVVENEYGSINHTYHLDVV 97

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENV-TLSIDGKKQKL 472
             ++   L  V  +      F           ++W K+GKE      +    +  +   L
Sbjct: 7   TEKMEKRLHAVPAA--NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 64

Query: 473 IIFSAGLEDAGEYSCRV-GDTGDKESKATLTV 503
           I+ S    D G Y+C V  + G       L V
Sbjct: 65  IMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.4 bits (166), Expect = 1e-14
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY---KDGKLIKDRQITSEKNTHTLT 169
           +P  +   +   + EG+SA    +V     P V W+   ++ K           N + LT
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
           + +    DKG Y+V+  N  GT E    LNV  +  
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY---KDGKLIKDRQITSEKNTHTLT 291
           +P  +   +   + EG+SA    +V     P V W+   ++ K           N + LT
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           + +    DKG Y+V+  N  GT E    LNV
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.7 bits (146), Expect = 4e-12
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P FI +     V E  +     +V AS  P + W ++++ L  S K  + ++G +  L +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
                + D G+Y V A N  G+      + V
Sbjct: 62  NRVKGD-DKGEYTVRAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           +  FI K    EV E ++A     V +     V W KD +E+K S K      G    L 
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELPP 416
           I  +   D+GEYT     S   +E    LNV     
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (122), Expect = 7e-09
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
           P F  K       E        R++A   P + W+ +   L+++ + +     + +    
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL-- 59

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPE 112
             TI  +K  ++G YTV AKN  G  +  + + V T   E
Sbjct: 60  --TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV-TRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
           P   V     +V   + A+F   +      +V W+KD +E+  S       +G    L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 475 FSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPA 507
                +D GEY+ R  ++ G KE    L V   +
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.4 bits (161), Expect = 3e-14
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
           +P  L+ + D     G     S    G+P P V W +DG+ +  +    E +   L   +
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI-EVSGGELRFSK 59

Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNV 200
              +D G Y     NK GTV ++A L V
Sbjct: 60  LVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.4 bits (161), Expect = 3e-14
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
           +P  L+ + D     G     S    G+P P V W +DG+ +  +    E +   L   +
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI-EVSGGELRFSK 59

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
              +D G Y     NK GTV ++A L V
Sbjct: 60  LVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P +++   +        +R        P P++ W R+ +PL S  +              
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRF---- 57

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
                  D+G Y+ VA N+ G+    A +TV
Sbjct: 58  -SKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
           P +        A+  S++         P P + W  +G+P         + Q+ +     
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP--------LASQNRIEVSGG 53

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
            +    +   + G+Y  VA+N+ G       + V
Sbjct: 54  ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           + +++  + D E     +       +   +  V+W +DGQ + +  ++ +    +  +L 
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELR 56

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNV 411
              + + D G Y C           SAEL V
Sbjct: 57  FSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIF 475
           P+    + D +        +    + G               +    + +     +L   
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEVS--GGELRFS 58

Query: 476 SAGLEDAGEYSCRVGDT-GDKESKATLTVEA 505
              LED+G Y C   +  G   + A LTV+A
Sbjct: 59  KLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 114 PSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
           P    +P   + + +G+   +  +V G P+P V W  + K +   + T       L +  
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT--VTDSGLVIKG 60

Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNV 200
               DKG Y  + TN+ G       + V
Sbjct: 61  VKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 236 PSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
           P    +P   + + +G+   +  +V G P+P V W  + K +   + T       L +  
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT--VTDSGLVIKG 60

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
               DKG Y  + TN+ G       + V
Sbjct: 61  VKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 558 APLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
           AP + ++ E+   VK+   + +  KV   PAP++VW  N KPL     +  + D   +I 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATVTDSGLVIK 59

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            +K  D     G Y   ATNE G       V V
Sbjct: 60  GVKNGDK----GYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 59.8 bits (144), Expect = 7e-12
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 12  PPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            P + +K  K +  ++  +VT+  ++  +P P+++W +N +PL                 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS---------GGRATVT 52

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
            S + IK +K  ++G Y   A N  G+   +  V+VN
Sbjct: 53  DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 45.5 bits (107), Expect = 7e-07
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 328 EFIKKL-DDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
           ++ +K    + VK+ ++  +  +VT     +V W  + + +   +    +       L+I
Sbjct: 4   KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD-----SGLVI 58

Query: 386 RNISVHDEGEYTC----SLPDQETSAELNV 411
           + +   D+G Y C       D+     + V
Sbjct: 59  KGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 415 PPEISV-PLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
            P+    P + + V + +  +   ++T      V W  + K ++               L
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD-----SGL 56

Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
           +I      D G Y CR   + GDK  +  + V
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
           +AP  +  P   ++VK+G+D+ I  +   LP P   W+ N   +   +  
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT 50

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 63.4 bits (153), Expect = 6e-13
 Identities = 26/97 (26%), Positives = 39/97 (40%)

Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
           P   P F +   +  V E    R   KV+  P P ++WF+++ P+  S   +  +D E  
Sbjct: 5   PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64

Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
                      D   Y   A N LG AT  A + V+ 
Sbjct: 65  CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTL 168
           KP   + + D+ + EG +A    +V G P P+V W+KD   +K+    +    E+   +L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
           T+ +    D  +Y+ K  N  G     A L V+
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTL 290
           KP   + + D+ + EG +A    +V G P P+V W+KD   +K+    +    E+   +L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           T+ +    D  +Y+ K  N  G     A L V+
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           + P F+K    +   E S    + ++   P+P+++W+ +  P++E+         + +  
Sbjct: 7   VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
              +TI  +   ++  YT  A N  GEA     + V T
Sbjct: 67  ---LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
             + P  +  + D++V     A F+ ++    D  V W+KD   +  S +  +  D +  
Sbjct: 5   PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64

Query: 471 -KLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEA 505
             L I     +D  +Y+C+     G+    A L VE 
Sbjct: 65  CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKV-TIEKKGTIRKL 383
           K  F K + D+EV E   A  + +V      +V WFKD   +K S+       +     L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 384 LIRNISVHDEGEYTC----SLPDQETSAELNV 411
            I  +   D+ +YTC    SL +   +AEL V
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 6e-13
 Identities = 24/87 (27%), Positives = 39/87 (44%)

Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
           E  K L  +EV   E A  E+E++      +W   GQ +  S    I + G    L++ N
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 388 ISVHDEGEYTCSLPDQETSAELNVVEL 414
             +   GE +    + +++A L V EL
Sbjct: 63  CQLGMTGEVSFQAANAKSAANLKVKEL 89

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           E+  PL  V+V   E A FEIEL++ D   +W   G+ +  S +  +  DGKK  LI+ +
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTVEA 505
             L   GE S +  +    +S A L V+ 
Sbjct: 63  CQLGMTGEVSFQAANA---KSAANLKVKE 88

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQ 172
           + +PL+ V +  GE+A   +++   P    +W   G+ +      +I  +   H L L  
Sbjct: 4   VEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNV 200
           C     G  S +  N +      ANL V
Sbjct: 63  CQLGMTGEVSFQAANAKSA----ANLKV 86

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQ 294
           + +PL+ V +  GE+A   +++   P    +W   G+ +      +I  +   H L L  
Sbjct: 4   VEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
           C     G  S +  N +      ANL V
Sbjct: 63  CQLGMTGEVSFQAANAKSA----ANLKV 86

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 15  FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIV 74
             K    V          E+  ++ P+    W   G+PL  + +    +    H      
Sbjct: 4   VEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL---- 58

Query: 75  TIKSIKKREEGVYTVVAKNREGEAKMDI 102
            + + +    G  +  A N +  A + +
Sbjct: 59  ILHNCQLGMTGEVSFQAANAKSAANLKV 86

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWF 778
           E  K L  +EV   E A  E+E++      +W 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWK 35

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTS--KKVTIEKKGTIRKLLIR 386
             K+L+D      E   LE EV+ D A+VKWFK+G+EI      +  I  +G    L+I 
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62

Query: 387 NISVHDEGEYTCSLPDQETSAELNVVE 413
             +  D  EY+      ++SA+L+V  
Sbjct: 63  GATKADAAEYSVMTTGGQSSAKLSVDL 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 418 ISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSI--DGKKQKLIIF 475
           ++  L+D      E+   E E+++ DA VKW+K+G+EI         I  +GKK  LII 
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62

Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
            A   DA EYS         +S A L+V+
Sbjct: 63  GATKADAAEYSVMT---TGGQSSAKLSVD 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTLTL 170
           + + L D +   GE   L  +V       V+W+K+G+ I        +I  E   H L +
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              +  D   YSV  T  + +    A L+V
Sbjct: 62  EGATKADAAEYSVMTTGGQSS----AKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTLTL 292
           + + L D +   GE   L  +V       V+W+K+G+ I        +I  E   H L +
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              +  D   YSV  T  + +    A L+V
Sbjct: 62  EGATKADAAEYSVMTTGGQSS----AKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENIILE 617
           +  ++ E+ T      + L  +V +    ++ WF+N + ++  PK R     +G+  IL 
Sbjct: 2   MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60

Query: 618 LKEADSETDAGDYKVVATNELGSAT 642
           ++ A ++ DA +Y V+ T    SA 
Sbjct: 61  IEGA-TKADAAEYSVMTTGGQSSAK 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 14  TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
             +K+ +   A     V LE   V+  + ++ W+ NGE +    +  +  + +   +  I
Sbjct: 2   MVTKQLEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH--I 58

Query: 74  VTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105
           + I+   K +   Y+V+    +  AK+ + +K
Sbjct: 59  LIIEGATKADAAEYSVMTTGGQSSAKLSVDLK 90

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 114 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTH 166
           P++      V+ T   G+S  L     G P P + W KDG+ I+     D +     ++ 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            LT+      D+  Y     NK G  +++ +L V
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 236 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTH 288
           P++      V+ T   G+S  L     G P P + W KDG+ I+     D +     ++ 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            LT+      D+  Y     NK G  +++ +L V
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 11  IPPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           +PPT   +       A     VTL       PEP + W  +GEP++  +E    ++    
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE--DDEKHIFS 59

Query: 69  SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
              S +TI+++ K +E  Y  +A+N+ GE    I +KV
Sbjct: 60  DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL-KEADSETDA 627
           T     ++ L+      P P++ W ++ +P+ +  +  E     +   EL      + D 
Sbjct: 16  TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDE 75

Query: 628 GDYKVVATNELGSATHGARVTV 649
            +Y  +A N+ G       + V
Sbjct: 76  AEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVT--IEKKGTIRKLLIRNISVH 391
           +      ++  L  +     +  + W KDG+ I+  ++            +L IRN+  +
Sbjct: 14  NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 73

Query: 392 DEGEYTC----SLPDQETSAELNV 411
           DE EY C       +Q+ S  L V
Sbjct: 74  DEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 414 LPPEISVP--LQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEI--AFSENVTLSIDGK 468
           +PP +     + +   +  +  +   +     +  + W KDG+ I     ++        
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61

Query: 469 KQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEA 505
             +L I +    D  EY C      G++++   L V A
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT---HTLT 169
           KP IL     + I  G +  L V   G P P   W                      ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                  D G Y +KV N+ G  E+   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT---HTLT 291
           KP IL     + I  G +  L V   G P P   W                      ++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                  D G Y +KV N+ G  E+   + V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (114), Expect = 9e-08
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
            P  +    +  +K   T  L      +P P+  W   +     +P+           + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
                   D+G+YK+   NELG       V V
Sbjct: 62  FPS-AKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
           + P     ++ +  +      LEV  +  P+P   W            +      D  S 
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG----DSGAALAPELLVDAKSS 56

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
            + +   S K+ + G Y +  KN  GE +    V V
Sbjct: 57  TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 414 LPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
           L P+I    + +K+      + E++     D    W       A +  + +        +
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 473 IIFSAGLEDAGEYSCRV-GDTGDKESKATLTVE 504
              SA   D+G Y  +V  + G+ E+   + V+
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           K + +     +++K      LEV+          W         + ++ ++ K +   + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNV 411
             +    D G Y       L + E   E+ V
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 5e-12
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 17/106 (16%)

Query: 112 EKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR------------- 157
            +P +   L  + S   G       +V  +  P ++W K  +    +             
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 158 ---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                T++K    L +   + +D G Y+    N  G    +A L V
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 5e-12
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 17/106 (16%)

Query: 234 EKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR------------- 279
            +P +   L  + S   G       +V  +  P ++W K  +    +             
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 280 ---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                T++K    L +   + +D G Y+    N  G    +A L V
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 559 PLFIERF-EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-------------PK 604
           P+         +    G +  + KV +   P I W ++ +   S                
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 605 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
                D E  +L ++    E DAG+Y  +A N +G + H A +TV
Sbjct: 65  GVNTTDKEIEVLYIRNVTFE-DAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 12  PPTFSKKT-KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET---------DEVVF 61
            P                +V    ++ +  +P + W  + E                +  
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 62  SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
           +  +     + ++ I+++   + G YT +A N  G +     + V
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 9e-05
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-------------KKVTIEKKGTI 380
           +       +     +V SD +  ++W K  ++  +                        I
Sbjct: 14  NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 73

Query: 381 RKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
             L IRN++  D GEYTC    S+     SA L V+
Sbjct: 74  EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 415 PPEISVPL-QDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIA-------------FSE 459
            P +   L  +          F  ++       ++W K  ++                  
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
               + D + + L I +   EDAGEY+C  G++ G     A LTV
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 5e-12
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT---HTLTLIQ 172
           IL     +++ EGESA  S    GEP P V W + G+++          T    T  +  
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNV 200
               D+G YSV V N EG  E+   L +
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 5e-12
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT---HTLTLIQ 294
           IL     +++ EGESA  S    GEP P V W + G+++          T    T  +  
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
               D+G YSV V N EG  E+   L +
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 620
            + +    TV E  + R        P P++ W R  + L +S + +          E+  
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 621 ADSETDAGDYKVVATNELGSATHGARVTV 649
             +  D G+Y VV  N  G       +T+
Sbjct: 62  VQAS-DEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 6e-08
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 15  FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIV 74
              K + +   E             P P + W   G+ L  +     +      ++    
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE--- 58

Query: 75  TIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
            I S++  +EG Y+VV +N EG+ + +  + +
Sbjct: 59  -ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
            + K   + V E E+A    +   +    V W + GQ + TS +  +          I +
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 388 ISVHDEGEYTC----SLPDQETSAELNVVE 413
           +   DEG Y+     S   QE    L + +
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 418 ISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
           I    + + V   E A F  +   +    V W + G+ ++ S    ++    K    I S
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 477 AGLEDAGEYSCRV-GDTGDKESKATLTVE 504
               D G YS  V    G +E++ TLT++
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 326 KAEFIKKLDD-LEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKK-VTIEKKGTIRKL 383
              F KKL+   +V +     L VE+    A+VKW K+GQEI+ S      E  G  R L
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTL 64

Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVE 413
            I   S+ D+  Y C +  ++ S EL V E
Sbjct: 65  TISQCSLADDAAYQCVVGGEKCSTELFVKE 94

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 110 KPEKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGK----LIKDRQITSEKN 164
           + +  +  + L     +++G    L+V++      +V+W K+G+            S   
Sbjct: 2   EKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGA 60

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             TLT+ QCS  D   Y   V  ++ +      L V
Sbjct: 61  KRTLTISQCSLADDAAYQCVVGGEKCS----TELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 232 KPEKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGK----LIKDRQITSEKN 286
           + +  +  + L     +++G    L+V++      +V+W K+G+            S   
Sbjct: 2   EKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGA 60

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             TLT+ QCS  D   Y   V  ++ +      L V
Sbjct: 61  KRTLTISQCSLADDAAYQCVVGGEKCS----TELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 415 PPEISVPLQD-VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSEN-VTLSIDGKKQKL 472
                  L+   +VS+  K    +EL   DA VKW K+G+EI  S +       G K+ L
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTL 64

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
            I    L D   Y C V   G ++    L V+
Sbjct: 65  TISQCSLADDAAYQCVV---GGEKCSTELFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 9   EGIPPTFSKKTKPVY-AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
           E     F KK +P Y   +  ++ L V  +A  + ++ W  NG+ +Q +      +    
Sbjct: 2   EKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGA 60

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102
                 +TI      ++  Y  V    +   ++ +
Sbjct: 61  KR---TLTISQCSLADDAAYQCVVGGEKCSTELFV 92

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 557 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
           ++  F ++ E    V +   IRL  ++    A         +  +S  K      G    
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 616 LELKEADSETDAGDYKVVATNELGSAT 642
           L + +     D   Y+ V   E  S  
Sbjct: 64  LTISQCSLA-DDAAYQCVVGGEKCSTE 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 114 PSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
           PSI      D     G+   L     G P P+++W K       + ++   +   L +  
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS---SEPLLHIQN 61

Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNV 200
              +D+G Y  +  N +G       + +
Sbjct: 62  VDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 236 PSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
           PSI      D     G+   L     G P P+++W K       + ++   +   L +  
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS---SEPLLHIQN 61

Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
              +D+G Y  +  N +G       + +
Sbjct: 62  VDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 558 APLFIERF-EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
           AP    +F  +        + L      +P P I W + +        +   +     +L
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS------QTSKWLSSEPLL 57

Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
            ++      D G Y+  A N  G  T+  R+ +
Sbjct: 58  HIQNV-DFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 12  PPTFSKKT-KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            P+   K     YA     VTLE      P P + W               S  S   S 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL----------DGSQTSKWLSS 53

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
             ++ I+++   +EG Y   A+N +G       + ++
Sbjct: 54  EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 413 ELPPEISVPL-QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
           +  P I      D      +  + E     G+ + +            + T      +  
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAF-GNPVPQIK----WRKLDGSQTSKWLSSEPL 56

Query: 472 LIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEA 505
           L I +   ED G Y C      G    +  + + A
Sbjct: 57  LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 5e-10
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 5/102 (4%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSD--- 66
           +PP+    + P      +   L        P  +  W+ +G  +   D        +   
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 67  -MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
            +      +    +   + G Y   A+N  G A       ++
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           P         +V       L       SP     WF++   +L++  K+      +    
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 618 LKEADSET-------DAGDYKVVATNELGSATHGARVTVDVEKV 654
             ++           D+G+Y   A N  G+A       +D  ++
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 106

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-----------DRQITS 161
           PS        S+T G  AVL+     G P  +  W+KDG  +            +   T 
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
           +  +  L     +  D G Y  +  N  GT   +   ++D  E
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-----------DRQITS 283
           PS        S+T G  AVL+     G P  +  W+KDG  +            +   T 
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           +  +  L     +  D G Y  +  N  GT   +   ++D
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE--------NVTLS 464
           PP          V+   +A        G   +   W+KDG  +  ++        N + +
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEA 505
           ID K   LI       D+GEY C+     G         ++A
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 6e-10
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTK 176
            +++++G+   L+  V G   P ++W KDG ++++       ++ +     L+L      
Sbjct: 5   KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS 64

Query: 177 DKGRYSVKVTNKEGTVESA-ANLNV 200
           D GRY  +V +   T  S    L V
Sbjct: 65  DAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 6e-10
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTK 298
            +++++G+   L+  V G   P ++W KDG ++++       ++ +     L+L      
Sbjct: 5   KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS 64

Query: 299 DKGRYSVKVTNKEGTVESA-ANLNV 322
           D GRY  +V +   T  S    L V
Sbjct: 65  DAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 6e-08
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-LELKEADSE 624
            + TV +   ++L   V+    P I W ++   + +  +       ++ I     ++   
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 625 TDAGDYKVVATNELGSA-THGARVTV 649
           +DAG Y     +   +  +    +TV
Sbjct: 64  SDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK 81
          +   +   V L   +  + EPD+ W  +G  +Q  D++          ++  +++KS+++
Sbjct: 6  LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV--SEQHWIGFLSLKSVER 63

Query: 82 REEGVYTVVAKNREGEA 98
           + G Y    ++     
Sbjct: 64 SDAGRYWCQVEDGGETE 80

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLIRNISVH 391
            L V + +   L   V    + D++W KDG  ++      + + ++  I  L ++++   
Sbjct: 5   KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS 64

Query: 392 DEGEYTCSL-----PDQETSAELNV 411
           D G Y C +      +      L V
Sbjct: 65  DAGRYWCQVEDGGETEISQPVWLTV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 113 KPSILEPLHDVSITEG---ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 169
            P   E        EG   E   L+ +    P     W  +G  +K    +  +      
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 170 LIQCSTKDK--GRYSVKVTNKEGTVESA-ANLN 199
           +I    K K  G Y    TN  GTV S  A+L 
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 235 KPSILEPLHDVSITEG---ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 291
            P   E        EG   E   L+ +    P     W  +G  +K    +  +      
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 292 LIQCSTKDK--GRYSVKVTNKEGTVESA-ANLN 321
           +I    K K  G Y    TN  GTV S  A+L 
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (122), Expect = 7e-09
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 558 APLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
            P+F E+       E   +  + L  + +A+P  +  W  N   L   P  R      + 
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62

Query: 615 ILELKEADSETDAGDYKVVATNELGSAT 642
            L +       DAG Y+ VATN  G+  
Sbjct: 63  -LVISNPVKAKDAGSYQCVATNARGTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 12 PPTFSKKTKPVYAEENSE---VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
           P F ++       E S    VTL  R  A P     W  NG  L+   +  +       
Sbjct: 4  GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-----RL 58

Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
              +V    +K ++ G Y  VA N  G   
Sbjct: 59 VAGDLVISNPVKAKDAGSYQCVATNARGTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 329 FIKKLDDLEVKE---RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
           F ++       E    E   L     ++  A  +W  +G E+K               ++
Sbjct: 7   FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AGDLVI 65

Query: 385 IRNISVHDEGEYTC 398
              +   D G Y C
Sbjct: 66  SNPVKAKDAGSYQC 79

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI------KDRQITSEKNT 165
             P  L  + +V +  G+ A       G        +  G  +      + +  +S +  
Sbjct: 1   RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 200
            +  ++  + +D G+Y   +  + G   S  A L V
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI------KDRQITSEKNT 287
             P  L  + +V +  G+ A       G        +  G  +      + +  +S +  
Sbjct: 1   RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
            +  ++  + +D G+Y   +  + G   S  A L V
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 6/97 (6%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKPLLSSPKKREIFDGEN 613
           + P F+ R +   V                      +    + +       K        
Sbjct: 1   RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 614 IILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 649
               +       DAG Y+ +   E G    + A + V
Sbjct: 60  ASFNVVNTTKR-DAGKYRCMIRTEGGVGISNYAELVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 2/87 (2%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P F +  + V        T +   +         +  G  +++         S      
Sbjct: 2  TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
          S   + +  KR+ G Y  + +   G  
Sbjct: 61 SF-NVVNTTKRDAGKYRCMIRTEGGVG 86

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSDKA----DVKWFKDGQEIKTSKKVTIEKKGTIR 381
           +     ++ ++EV   + A  +                  D ++    +      +  I 
Sbjct: 1   RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 382 KLLIRNISVHDEGEYTCSLPDQETSAELNVVEL 414
              + N +  D G+Y C +  +      N  EL
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 93

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGK------------LIKDR 157
               +    D  +T G S   S +V G      P V+W+K               L    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 158 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              S+     L +        G Y  +V+ K+    S  NL V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGK------------LIKDR 279
               +    D  +T G S   S +V G      P V+W+K               L    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              S+     L +        G Y  +V+ K+    S  NL V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-07
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRN---------NKPLLSSPKK 605
             LF+ R ++  V   G+I   A+V  +     P + WF+           + L      
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 606 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
                     L + +A      G Y+   + +         +TV
Sbjct: 64  DRASKVYLFELHITDAQPA-FTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 17/108 (15%)

Query: 323 DQGKAEFIKKLDDLEVKERENAVLEVEVTSD----KADVKWFKD---------GQEIKTS 369
           D     F+ +  D EV    +      V          VKWFK          GQ ++  
Sbjct: 1   DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 370 KKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
                  K  + +L I +      G Y C          ++  L V E
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 8/103 (7%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPLQETDE-----VVFSD 63
              F  + +         +T   R+        P + W+        +       +  S 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 64  QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
                 Y+  + I   +    G Y      ++     +  + V
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 14/108 (12%)

Query: 413 ELPPEISVPLQDVKVSRDEKASFE-------------IELTKGDALVKWYKDGKEIAFSE 459
           +      +  QD +V+     +F              ++  KG  +    K G+ +   +
Sbjct: 2   DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61

Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAP 506
           +   +      +L I  A     G Y C V        S   LTV   
Sbjct: 62  SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 173
           P++   + + S+  G+  +L  QV G    +  W           + S         +  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 174 STKDKGR--YSVKVTNKEGTVESAANLNV 200
            T D  R   +    N  G  E +  +NV
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 295
           P++   + + S+  G+  +L  QV G    +  W           + S         +  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 296 STKDKGR--YSVKVTNKEGTVESAANLNV 322
            T D  R   +    N  G  E +  +NV
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
           P    +    +V     + L  +V+        W         S    +     ++ L L
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ--SATVMKSGGLPSLGLTL 60

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
               S+ +  +    A N++G A    +V V
Sbjct: 61  ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 7e-07
 Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 5/96 (5%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
            PT   +      +   +V L  ++         W                 +S     +
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA-----TVMKSGGLPSL 56

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
            +              T  A+N  G A++ + V V+
Sbjct: 57  GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-09
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR----------QITSEK 163
           P +        I EGE+A+L  +    P      +      +D+           ++S +
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 164 NTHTLTLIQCSTKDK-GRYSVKVTNKEGTVESAANLNV 200
               L +   + +   G+Y    T+ +G+ ++   L V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-09
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR----------QITSEK 285
           P +        I EGE+A+L  +    P      +      +D+           ++S +
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 286 NTHTLTLIQCSTKDK-GRYSVKVTNKEGTVESAANLNV 322
               L +   + +   G+Y    T+ +G+ ++   L V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-------PLLSSPKKREIFDG 611
           P        + + E  T  L+ K ++ P  +   +              S  +       
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
               L ++  + E D G Y+   T+  GS      + V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM---- 67
           PP         +  E     L  +  +VP      +Y     ++   +  S+        
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 68  HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
                +       + + G Y     + +G  +  I ++V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-09
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 7/109 (6%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD------ 610
             P  I   + +        ++   ++++P P  + +   + +L S              
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 611 -GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
            G    L +           Y   A N  GS T   R+     ++  P 
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSY 70
           PP  S  T+  +A    +  ++  + + P PD + +      L+      ++ ++     
Sbjct: 7   PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 71  --VSIVTIKSIKKR-EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             +S +TI +I +   + +Y   A N  G     I +K    +   PS
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY----------KDGK 274
           TL VN      P I+          GE   +   +   P P    +            G+
Sbjct: 1   TLTVNG-----PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 55

Query: 275 LIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
              +   T E    TLT+        +  Y+    N  G+      L  
Sbjct: 56  YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 19/115 (16%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY----------KDGKLIKDRQITSEK 163
           P I+          GE   +   +   P P    +            G+   +   T E 
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 66

Query: 164 NTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
              TLT+        +  Y+    N  G+      L          + +  S P 
Sbjct: 67  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE--------QGSEMSGPS 113

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 9e-09
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEV---VFSDQSD 66
           +PP+      P  A   +   L        P  +  W+ +G  +    +      +    
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 67  MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
           ++     +    +   + G Y+  A+N  G       V++ 
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGK----------LIKDRQITSE 162
           PS        S T G  AVL+     G P  +  W+KDG              +      
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
             T  L     S  D G YS +  N  GT  ++  + ++  E
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           P         +        L    +  SP     WF++   + ++PK    F   + +L 
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 618 LKEAD------SETDAGDYKVVATNELGSATHGARVTVDV 651
               +      S +D G+Y   A N  G+      V ++ 
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGK----------LIKDRQITSE 284
           PS        S T G  AVL+     G P  +  W+KDG              +      
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
             T  L     S  D G YS +  N  GT  ++  + ++
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
           + P+  ++  E   +E     L   ++ +       ++ +    +  +       +   L
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 617 ELKEADSETDAGDYKVVATNELGSAT 642
                 +  D G Y+  A    G A+
Sbjct: 61  VFLRPQAS-DEGHYQCFAETPAGVAS 85

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK---LIKDRQITSEKNTHTL 168
           + P + +   +V   E    VL   + G        +K        ++      K+  +L
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAA 196
             ++    D+G Y        G   S  
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVASSRV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK---LIKDRQITSEKNTHTL 290
           + P + +   +V   E    VL   + G        +K        ++      K+  +L
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAA 318
             ++    D+G Y        G   S  
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVASSRV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 4/87 (4%)

Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P    +   V   EN+   LE  +    +     +          E   + + D  S  
Sbjct: 2  YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL- 60

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
                  +  +EG Y   A+   G A
Sbjct: 61 ---VFLRPQASDEGHYQCFAETPAGVA 84

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 329 FIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
              +  ++  +E    VLE  +  +D+     +K   +    ++     +     L+   
Sbjct: 5   LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLR 64

Query: 388 ISVHDEGEYTCSLPDQETSAELNVVEL 414
               DEG Y C        A   V+  
Sbjct: 65  PQASDEGHYQCFAETPAGVASSRVISF 91

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKR-----EIFDG 611
             L+I+R  E ++       L   VK     P + W + N       + R     E  + 
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 612 ENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 649
              IL  +      D G Y+  A  +     +H   + V
Sbjct: 63  SFFILHFEPVLPN-DNGSYRCSANFQSNLIESHSTTLYV 100

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 20/113 (17%)

Query: 117 LEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGKLI------------KDRQITS 161
           +E     ++  GE      +V  E     P ++W+K   +             +  +  S
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
              T  + +I+      G Y  +VT K+     + +L V      ES  T P+
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV-----HESTGTTPN 111

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-07
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 239 LEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGKLI------------KDRQITS 283
           +E     ++  GE      +V  E     P ++W+K   +             +  +  S
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              T  + +I+      G Y  +VT K+     + +L V
Sbjct: 64  RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 17/105 (16%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD----KADVKWF---------KDGQEIKTSKKVTIE 375
           FI+K     VK  E+     +V ++    K  +KWF         K G+ ++  +     
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 376 KKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPP 416
            +    ++ I     +  G Y C           S +L V E   
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 107

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSS---------PKKRE 607
           LFIE+ +  TVK    I  +AKVKA      P+I WF+     L+S              
Sbjct: 2   LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61

Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
                   +++ +A     AG+Y+   T +    +    + V       P I+
Sbjct: 62  HSRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 113

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 8/110 (7%)

Query: 15  FSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPLQETDEVVFSDQSDMHS-- 69
           F +K +    +   ++T   ++ A     +P + W+        +         +     
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 70  ---YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
              Y   + I   K    G Y      ++        ++V+      P+I
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY-----------KDGKLIKDRQITS 161
           K S+     DV + E ES  L+    G  SP+VEW             + ++        
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             ++  +T    + KD G Y+  V+ + G      ++++
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY-----------KDGKLIKDRQITS 283
           K S+     DV + E ES  L+    G  SP+VEW             + ++        
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             ++  +T    + KD G Y+  V+ + G      ++++
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV- 71
            +       V   EN  + L         P + W +                +     V 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 72  ---SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
              S +T  S+ +++ G YT +     G+   ++ + + 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK--LIKDRQITSEKNTHTLTL 170
           K             EGE AV+   V     P + W   G+  ++K        + + L +
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                 D+G Y  +         +  ++ V
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK--LIKDRQITSEKNTHTLTL 292
           K             EGE AV+   V     P + W   G+  ++K        + + L +
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                 D+G Y  +         +  ++ V
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 6e-08
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 13  PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
             F     P   +E  +  +   +V+   P ++W + G  +    +V F   S+ +    
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---- 57

Query: 73  IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
            + I+ IKK +EG Y    +           ++V 
Sbjct: 58  -LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
            +F      +  KE     ++  V +S  P+I+W    + ++     R I    N +  +
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-I 60

Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTVDV 651
           +      D G Y+           +   + V V
Sbjct: 61  RGIKKT-DEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 27/73 (36%)

Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
           K  F       E KE E+AV+  +V S       +K        KK       +   L I
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60

Query: 386 RNISVHDEGEYTC 398
           R I   DEG Y C
Sbjct: 61  RGIKKTDEGTYRC 73

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 113 KPSILEPLH--DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 170
            P + E     + +  E        Q  G P P+++  KD                    
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD----------GTFPLPIGES 51

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           +  +   +G Y  +  + +G V     +NV
Sbjct: 52  VTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 235 KPSILEPLH--DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 292
            P + E     + +  E        Q  G P P+++  KD                    
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD----------GTFPLPIGES 51

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           +  +   +G Y  +  + +G V     +NV
Sbjct: 52  VTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 16/94 (17%)

Query: 558 APLFIERF--EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
            P   ER      T  E      M +   +P P +   ++    L   +   +       
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR----- 56

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
                       G Y   A +  G  T    V V
Sbjct: 57  ---------DLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 19/97 (19%)

Query: 12  PPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
            P   ++  P      ENS+ T   +    P P+L    +G       E V   +     
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEG- 60

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
                            Y   A++ +GE   ++ V V
Sbjct: 61  ----------------TYLCRARSTQGEVTREVTVNV 81

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 7e-08
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 116 ILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 174
            +E     S+  G             P+  + W +        +         LT+    
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD--FNGILTIRNVQ 62

Query: 175 TKDKGRYSVKVTNKEGTVESAANLNV 200
             D G Y    +N     +  A L+V
Sbjct: 63  PSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 7e-08
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 238 ILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 296
            +E     S+  G             P+  + W +        +         LT+    
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD--FNGILTIRNVQ 62

Query: 297 TKDKGRYSVKVTNKEGTVESAANLNV 322
             D G Y    +N     +  A L+V
Sbjct: 63  PSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
            + +E    ++V+    +  +   K+ SPA ++VW R +   L S          N IL 
Sbjct: 3   MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-----NGILT 57

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
           ++        G Y    +N        A + V
Sbjct: 58  IRNVQPSDA-GTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 10/96 (10%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
                ++ +       ++VT      +  P   L+W                  S    +
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK---------LPSRAMDF 52

Query: 71  VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             I+TI++++  + G Y     N     +    + V
Sbjct: 53  NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 329 FIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
            +++     V+   +        S      + W +       S+ +          L IR
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-----FNGILTIR 59

Query: 387 NISVHDEGEYTC----SLPDQETSAELNV 411
           N+   D G Y C         + +A L+V
Sbjct: 60  NVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 8e-08
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 17/105 (16%)

Query: 113 KPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------------- 156
           +P I+ P ++ + +  G    L   V G+ S    W  +G +I +               
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 157 RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNV 200
                      L + +  ++     ++    N  G   +   L  
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 8e-08
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 17/105 (16%)

Query: 235 KPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------------- 278
           +P I+ P ++ + +  G    L   V G+ S    W  +G +I +               
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 279 RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNV 322
                      L + +  ++     ++    N  G   +   L  
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 4e-06
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY- 70
           P   S   + +  +  S++ L   +         W +NG  + E D V+  D   + +  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 71  -------VSIVTIKSIKKREEGV-YTVVAKNREGEAKMDIPVKV 106
                  ++++ I  I+ R     +T  AKN  G     I +  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 17/86 (19%), Positives = 29/86 (33%)

Query: 694 PVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDD 753
           PVI  P    + V  G  +++           A W  NG+VI     V G+  +  +   
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 754 LEVKERENAVLEVEVTSDKADVKWFK 779
            + +     VL +     +     F 
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFT 87

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 37/128 (28%)

Query: 110 KPEKPSILEPL-----HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR------- 157
           + E P I           + +  G    L V + G+P+P V W K               
Sbjct: 1   RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 60

Query: 158 -------------------------QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 192
                                    ++ + K+    T+     +D+G Y+V V N  G  
Sbjct: 61  APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 120

Query: 193 ESAANLNV 200
           +    + V
Sbjct: 121 QVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 37/128 (28%)

Query: 232 KPEKPSILEPL-----HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR------- 279
           + E P I           + +  G    L V + G+P+P V W K               
Sbjct: 1   RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 60

Query: 280 -------------------------QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 314
                                    ++ + K+    T+     +D+G Y+V V N  G  
Sbjct: 61  APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 120

Query: 315 ESAANLNV 322
           +    + V
Sbjct: 121 QVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 30/110 (27%)

Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--------------------- 607
            V     +RL   +   PAP+++W +       +P +                       
Sbjct: 20  VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79

Query: 608 --------IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
                       +  I  ++ A+ E D G Y V   N +G       V V
Sbjct: 80  ETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 30/125 (24%)

Query: 12  PPTF-----SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
           PP        +    +     +++ L+V +   P P ++W        +       D  +
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 67  MH-------------------------SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD 101
                                         SI T++  +K +EGVYTV  KN  GE +++
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 123

Query: 102 IPVKV 106
           + VKV
Sbjct: 124 LTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 34/117 (29%)

Query: 331 KKLDDLEVKERENAVLEVEVTSD------------------------------KADVKWF 360
           +  D + V       L+V ++ D                               +D   F
Sbjct: 14  RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73

Query: 361 KDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
                 +T  +V +E         +      DEG YT      + + + +  + V++
Sbjct: 74  DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
           P       D+++       LS +  G      + W++    I               L  
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI------GGPAPSPSVLNV 55

Query: 173 CSTKDKGRYSVKVTNKEGTVESA-ANLNV 200
                   +S +  N +G   S  A +++
Sbjct: 56  TGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
           P       D+++       LS +  G      + W++    I               L  
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI------GGPAPSPSVLNV 55

Query: 295 CSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
                   +S +  N +G   S  A +++
Sbjct: 56  TGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 12/93 (12%)

Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           P F    ++  V      +L  +        +IVW+R    +        + +   +   
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVT-- 59

Query: 618 LKEADSETDAGDYKVVATNELGSAT-HGARVTV 649
                    +  +   A N  G A+   A V +
Sbjct: 60  --------QSTMFSCEAHNLKGLASSRTATVHL 84

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 10/87 (11%), Positives = 23/87 (26%), Gaps = 14/87 (16%)

Query: 13 PTFSKKTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
          P F+ + K +    N+   L            ++W+     +                  
Sbjct: 2  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--- 58

Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
                     +  +++  A N +G A
Sbjct: 59 ----------TQSTMFSCEAHNLKGLA 75

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTLTLIQCSTK 176
           D+    G+  ++    G  P     ++K+GK +           +  +   L       +
Sbjct: 12  DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 71

Query: 177 DKGRYSVKVTNKEGTVES-AANLNV 200
           D+G Y+ +V N  G  +  +  L V
Sbjct: 72  DEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTLTLIQCSTK 298
           D+    G+  ++    G  P     ++K+GK +           +  +   L       +
Sbjct: 12  DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 71

Query: 299 DKGRYSVKVTNKEGTVES-AANLNV 322
           D+G Y+ +V N  G  +  +  L V
Sbjct: 72  DEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGENII 615
            P ++   ++   K      +     ++P     +F+N K +  +P+ R           
Sbjct: 5   VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 616 LELKEADSETDAGDYKVVATNELGSA-THGARVTV 649
           L  K    E + G Y     N +G    H  ++TV
Sbjct: 63  LLFKTTLPEDE-GVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
            P +   +K + A+      +     + P     ++ NG+ +    E   +      + 
Sbjct: 4  PVPQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH--NRTS 59

Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAK 99
             +  K+    +EGVYT    N  G+ +
Sbjct: 60 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 88

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 21/109 (19%)

Query: 122 DVSITEGESA---VLSVQVGGEPSPKVEWYKDGKLIKDR----------QITSEKNTHTL 168
            V +          +   V G+P+P + W  +G ++ +                     L
Sbjct: 6   SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
            L Q +  + G Y++   N  G   ++              + P    P
Sbjct: 66  RLNQPTHVNNGNYTLLAANPFGQASASIMAAF--------MDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 13/92 (14%)

Query: 244 DVSITEGESA---VLSVQVGGEPSPKVEWYKDGKLIKDR----------QITSEKNTHTL 290
            V +          +   V G+P+P + W  +G ++ +                     L
Sbjct: 6   SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            L Q +  + G Y++   N  G   ++     
Sbjct: 66  RLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 7/99 (7%)

Query: 24  AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV---SIVTIKSIK 80
           A E     +   +   P P L W +NG  L ET  +         +       + +    
Sbjct: 12  AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71

Query: 81  KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
               G YT++A N  G+A   I         + P    P
Sbjct: 72  HVNNGNYTLLAANPFGQASASIMAAFM----DNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 578 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-------DGENIILELKEADSETDAGDY 630
           +   V   PAPS+ W  N   L  +      F          +  L L +     + G+Y
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNY 78

Query: 631 KVVATNELGSATHGARVTV 649
            ++A N  G A+       
Sbjct: 79  TLLAANPFGQASASIMAAF 97

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 27/116 (23%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPK--------------VEWYKDGKLIKDRQIT 160
            ++ P H +    G+ A L  ++    +                V  Y++GK     Q  
Sbjct: 4   RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 63

Query: 161 S------------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV-DPY 203
                         +    L +      D+G Y+    +     E+A  L V DP+
Sbjct: 64  EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (102), Expect = 8e-06
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 26/112 (23%)

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPK--------------VEWYKDGKLIKDRQIT 282
            ++ P H +    G+ A L  ++    +                V  Y++GK     Q  
Sbjct: 4   RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 63

Query: 283 S------------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                         +    L +      D+G Y+    +     E+A  L V
Sbjct: 64  EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 25/121 (20%), Positives = 37/121 (30%), Gaps = 7/121 (5%)

Query: 394 GEYTCSLPDQETSAELN-VVELP----PEISVPLQDVKVSRDEKASFEIELTKGDALVKW 448
           G++    P     A +    ELP    P  +    +V   R   +        G      
Sbjct: 1   GQFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAE 60

Query: 449 YKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPA 507
                       +  SI   K  L I +    D G Y+C   D +  +E+   L VE P 
Sbjct: 61  QAPEYRGRTE-LLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119

Query: 508 V 508
            
Sbjct: 120 Y 120

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 115 SILEPLHDVSITEGESAV---LSVQVGGEPSPKVEWYKDGKLIKD-------RQITSEKN 164
           ++  P   VS+ E E  +   +   V G P P + W  +G+ +++            E +
Sbjct: 1   TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 60

Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV-DPYEPKE 207
              L   + +  + G Y++   N  GT     N +      P +
Sbjct: 61  EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVD 104

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 237 SILEPLHDVSITEGESAV---LSVQVGGEPSPKVEWYKDGKLIKD-------RQITSEKN 286
           ++  P   VS+ E E  +   +   V G P P + W  +G+ +++            E +
Sbjct: 1   TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 60

Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              L   + +  + G Y++   N  GT     N + 
Sbjct: 61  EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF----DGE 612
             P  +   EE  ++ +  I     V+ +P P++ W  N +PL  S      +    +  
Sbjct: 3   YYPPRVVSLEEPELRLEHCIEF--VVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 60

Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
              L   +     + G+Y ++A N LG+A        
Sbjct: 61  EGCLLFNKPTHY-NNGNYTLIAKNPLGTANQTINGHF 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           PP      +P   E   E  +E  +   P P L W +NG+PL+E+  +      +     
Sbjct: 5   PPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 61

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
             +          G YT++AKN  G A   I    
Sbjct: 62  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 19  TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI----- 73
           ++ +Y      VT  V    VP  ++LW    + + E +   F   S   + V +     
Sbjct: 2   SQQIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 74  -VTIKSIKKREEGVYTVVAKNREGEAKMDIPV 104
            +TI ++   +E  Y + + N     K  + V
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 10/87 (11%)

Query: 335 DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIR----------KLL 384
            +      N    V       +V W K   ++   +        + +           L 
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63

Query: 385 IRNISVHDEGEYTCSLPDQETSAELNV 411
           I N++  DE EY    P+   + +  +
Sbjct: 64  IYNLTSSDEDEYEMESPNITDTMKFFL 90

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-------------EKNTHTL 168
            +      +    V     P  +V W K    + + + +              +  + +L
Sbjct: 4   QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           T+   ++ D+  Y ++  N   T++    L V
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMK--FFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-------------EKNTHTL 290
            +      +    V     P  +V W K    + + + +              +  + +L
Sbjct: 4   QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           T+   ++ D+  Y ++  N   T++    L V
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMK--FFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 11/91 (12%)

Query: 423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAF----------SENVTLSIDGKKQKL 472
           Q +        +F +        V W K   ++A           S    + +D     L
Sbjct: 3   QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
            I++    D  EY     +  D   K  L V
Sbjct: 63  TIYNLTSSDEDEYEMESPNITD-TMKFFLYV 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 12/92 (13%)

Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI----------FDGENII 615
           ++      G +         P   ++W +    +                    D  +  
Sbjct: 3   QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARV 647
           L +    + +D  +Y++ + N   +      V
Sbjct: 62  LTIYNL-TSSDEDEYEMESPNITDTMKFFLYV 92

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 11  IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDMHS 69
             PT    T       +    +   +   P+P L W+YNG  L            ++   
Sbjct: 3   FAPTI---TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 70  YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
           Y   + + +      G YT++AKN  G+ +  I           P I
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM----GWPGI 102

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 12/109 (11%)

Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN--- 613
                I   E  T      I     VK +P P++ WF N   L  S          N   
Sbjct: 2   HFAPTITFLESPTSDHHWCI--PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 614 --IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
               L+L       + GDY ++A NE G              +G P I+
Sbjct: 60  YHGCLQLDNPTHM-NNGDYTLIAKNEYGKDEKQISAHF----MGWPGID 103

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--------DRQITSEKNT 165
           P+I       S T      +   V G P P ++W+ +G ++                +  
Sbjct: 5   PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
             L L   +  + G Y++   N+ G  E   + + 
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--------DRQITSEKNT 287
           P+I       S T      +   V G P P ++W+ +G ++                +  
Sbjct: 5   PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             L L   +  + G Y++   N+ G  E   + + 
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 31/84 (36%)

Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
             P        G+S  L+    G  SP   W        + ++T+E  T TLT+   S  
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 177 DKGRYSVKVTNKEGTVESAANLNV 200
           ++  Y    T +   +E    + +
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEI 88

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 31/84 (36%)

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
             P        G+S  L+    G  SP   W        + ++T+E  T TLT+   S  
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 299 DKGRYSVKVTNKEGTVESAANLNV 322
           ++  Y    T +   +E    + +
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEI 88

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 16/92 (17%), Positives = 23/92 (25%), Gaps = 4/92 (4%)

Query: 111 PEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 169
              P+       ++   G+S  L+      E +  V W                    L 
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
           L      D G YS              +L VD
Sbjct: 64  LRSVQLHDSGNYSCYRAG---RPAGTVHLLVD 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 16/92 (17%), Positives = 23/92 (25%), Gaps = 4/92 (4%)

Query: 233 PEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 291
              P+       ++   G+S  L+      E +  V W                    L 
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
           L      D G YS              +L VD
Sbjct: 64  LRSVQLHDSGNYSCYRAG---RPAGTVHLLVD 92

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 6/98 (6%)

Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
           +P + P         T     ++ L          + V +   KP   S   R    G  
Sbjct: 2   APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR 61

Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
             L L+      D+G+Y                + VDV
Sbjct: 62  --LLLRSVQLH-DSGNYSCYRAGRPAGT---VHLLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 7/92 (7%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
            P   V    +     +  +      + +  A V W           +    +  +   L
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR---L 62

Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
           ++ S  L D+G YSC     G       L V+
Sbjct: 63  LLRSVQLHDSGNYSCYR--AGRPAGTVHLLVD 92

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 3/90 (3%)

Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPK--VEWYKDGKLIKDRQITSEKNTHTLTL 170
             +           G+   L  QV GG P  +  V   +  K +K      E    T T+
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
           +        ++S +              N 
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENT 94

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 3/90 (3%)

Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPK--VEWYKDGKLIKDRQITSEKNTHTLTL 292
             +           G+   L  QV GG P  +  V   +  K +K      E    T T+
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           +        ++S +              N 
Sbjct: 65  LVRRDHHGAQFSCRTELDLRPQGLELFENT 94

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 7/97 (7%), Positives = 26/97 (26%), Gaps = 4/97 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
           P        P +     ++TL  ++        L       L   ++ +  + +      
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVV----LLRGEKELKREPAVGEPAE 59

Query: 72  SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
              T+   +      ++   +       +++    + 
Sbjct: 60  VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 8/99 (8%)

Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKG----DALVKWYKDGKEIAFSENVTLSIDGKKQ 470
           P  + +          ++ +   ++  G       V   +  KE+     V       + 
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEP---AEV 60

Query: 471 KLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAV 508
              +         ++SCR   D   +  +      AP  
Sbjct: 61  TTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQ 99

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 116 ILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 174
           +L+    V   E +   L           KV + ++      +      +     + + +
Sbjct: 6   LLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQN-----GKDRKYFHHNSDFHIPKAT 59

Query: 175 TKDKGRYSVKVTNKEGTVESA-ANLNV 200
            KD G Y  +       V S   N+ +
Sbjct: 60  LKDSGSYFCRGLVGSKNVSSETVNITI 86

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 238 ILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 296
           +L+    V   E +   L           KV + ++      +      +     + + +
Sbjct: 6   LLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQN-----GKDRKYFHHNSDFHIPKAT 59

Query: 297 TKDKGRYSVKVTNKEGTVESA-ANLNV 322
            KD G Y  +       V S   N+ +
Sbjct: 60  LKDSGSYFCRGLVGSKNVSSETVNITI 86

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 112 EKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 167
           +K    E    +  +  E  V    +   E    + WYKD        ++     ++   
Sbjct: 1   DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 60

Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
           L  +    +D G Y   V N    +    +      EP
Sbjct: 61  LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEP 98

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 234 EKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 289
           +K    E    +  +  E  V    +   E    + WYKD        ++     ++   
Sbjct: 1   DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 60

Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
           L  +    +D G Y   V N    +    +   
Sbjct: 61  LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 6/90 (6%)

Query: 335 DLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
            L     E  V    +  +  K  + W+KD  +   S +          KL      V D
Sbjct: 11  ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVED 70

Query: 393 EGEYTC----SLPDQETSAELNVVELPPEI 418
            G Y C    S            VE  P +
Sbjct: 71  SGHYYCVVRNSSYCLRIKISAKFVENEPNL 100

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 8/95 (8%), Positives = 23/95 (24%), Gaps = 8/95 (8%)

Query: 114 PSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDR-----QITSEKNT 165
             ++  L    +  G+S  +  +V       S  +  ++  + +            ++ T
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
            T             +S        +         
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 8/95 (8%), Positives = 23/95 (24%), Gaps = 8/95 (8%)

Query: 236 PSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDR-----QITSEKNT 287
             ++  L    +  G+S  +  +V       S  +  ++  + +            ++ T
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
            T             +S        +         
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW-----------YKDGKLIKDRQITS 161
             ++     +V I E     LS    G  SP+VEW             + K+    +   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                 +T    + +D G Y+  V+ + G       + +
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW-----------YKDGKLIKDRQITS 283
             ++     +V I E     LS    G  SP+VEW             + K+    +   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                 +T    + +D G Y+  V+ + G       + +
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 12  PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
             T       V   EN+ V L         P + W ++               +     V
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 72  SIV----TIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
           + +    T KS+ + + G YT +     G +  ++ VK+
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 240 EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 295
           E    V ITEG   + +       P+    W  +        D +    + T  L + + 
Sbjct: 9   EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKT 68

Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQ 324
              D G YS   T+    +  +      Q
Sbjct: 69  EASDLGNYSCFATSHIDFITKSVFSKFSQ 97

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 118 EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 173
           E    V ITEG   + +       P+    W  +        D +    + T  L + + 
Sbjct: 9   EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKT 68

Query: 174 STKDKGRYSVKVTNKEGTVESA-----ANLNVDP 202
              D G YS   T+    +  +     + L++  
Sbjct: 69  EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 102

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 561 FIERFEEK-----TVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENI 614
           F++ F  +      + E   +             S  W  N  P       R        
Sbjct: 2   FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 61

Query: 615 ILELKEADSETDAGDYKVVATNELGSATH-----GARVTVDVE 652
            L + +    +D G+Y   AT+ +   T       +++++  E
Sbjct: 62  NLYIAKT-EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 103

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 9e-05
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 118 EPLHDVSITEGESAVLS------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
           + +    +       L        +      PK++WYKD K +    I        L ++
Sbjct: 4   QAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVM 63

Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKET 211
             + K +G Y+   +      +      ++    +E+K T
Sbjct: 64  NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 103

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 240 EPLHDVSITEGESAVLS------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
           + +    +       L        +      PK++WYKD K +    I        L ++
Sbjct: 4   QAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVM 63

Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNV 322
             + K +G Y+   +      +      +
Sbjct: 64  NVAEKHRGNYTCHASYTYLGKQYPITRVI 92

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 559 PLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
           PL +E  E    V    + +L  ++  +   + V +R               D    +L 
Sbjct: 3   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDT----SLGAVQSDTGRSVLT 58

Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
           ++ A     AG    V +    +  H  ++ V
Sbjct: 59  VRNASLS-AAGTRVCVGSCGGRTFQHTVQLLV 89

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 8e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 113 KPSILEPLH-DVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 170
           KP  +EP    V++  G S  L+ ++   +    V+W      +   Q  +      LT+
Sbjct: 2   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLTV 59

Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
              S    G      +    T +    L V
Sbjct: 60  RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 8e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 235 KPSILEPLH-DVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 292
           KP  +EP    V++  G S  L+ ++   +    V+W      +   Q  +      LT+
Sbjct: 2   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLTV 59

Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
              S    G      +    T +    L V
Sbjct: 60  RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 457 FSENVTLSIDGKKQK--LIIFSAGLEDAGEYSCRV---GDTGDKESKATLTV 503
           F E +    D   +   ++I +    D G ++C V    D   K S+ TL V
Sbjct: 66  FKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
           L    D  + +G+S  L+++     SP V+           +  + +   TL++ Q   +
Sbjct: 3   LTANSDTHLLQGQSLTLTLESPPGSSPSVQCR-------SPRGKNIQGGKTLSVSQLELQ 55

Query: 177 DKGRYSVKVTNKEGTVESAANLNV 200
           D G ++  V   +  VE   ++ V
Sbjct: 56  DSGTWTCTVLQNQKKVEFKIDIVV 79

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
           L    D  + +G+S  L+++     SP V+           +  + +   TL++ Q   +
Sbjct: 3   LTANSDTHLLQGQSLTLTLESPPGSSPSVQCR-------SPRGKNIQGGKTLSVSQLELQ 55

Query: 299 DKGRYSVKVTNKEGTVESAANLNV 322
           D G ++  V   +  VE   ++ V
Sbjct: 56  DSGTWTCTVLQNQKKVEFKIDIVV 79

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 31/117 (26%)

Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQIT---------- 160
           SI  P   +   +GE+A L  +    P  +    +EW       +               
Sbjct: 6   SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 65

Query: 161 -----------------SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
                             +    ++ +      D G Y  KV    G      +L V
Sbjct: 66  DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 31/117 (26%)

Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQIT---------- 282
           SI  P   +   +GE+A L  +    P  +    +EW       +               
Sbjct: 6   SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 65

Query: 283 -----------------SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
                             +    ++ +      D G Y  KV    G      +L V
Sbjct: 66  DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 4/102 (3%)

Query: 18  KTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTI 76
           KT      E     L+  L     +P + W           +V   D+         +  
Sbjct: 8   KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 67

Query: 77  KSIKK---REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
             + K    +   Y   AKN   + ++ +      G  +  S
Sbjct: 68  TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	785
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.74
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.69
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.67
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.66
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.66
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.66
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.65
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.64
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.63
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.59
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.59
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.57
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.57
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.57
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.56
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.55
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.55
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.55
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.54
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.54
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.54
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.54
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.54
d2avga1	110	Cardiac myosin binding protein C, different domain	99.53
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.53
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.52
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.52
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.52
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.52
d2avga1	110	Cardiac myosin binding protein C, different domain	99.51
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.51
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.51
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.5
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.5
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.49
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.49
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.48
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.48
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.48
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.47
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.47
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.47
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.47
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.47
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.46
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.45
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.45
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.44
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.44
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.44
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.43
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.43
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.43
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.43
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.42
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.42
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.42
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.4
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.39
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.39
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.39
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.39
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.38
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.38
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.37
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.37
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.37
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.37
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.36
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.34
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.34
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.33
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.33
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.33
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.3
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.29
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.29
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.29
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.27
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.26
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.26
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.26
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.25
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.24
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.24
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.24
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.23
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.23
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.22
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.17
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.14
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.1
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.04
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.99
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.98
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.97
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.8
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.74
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.69
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.63
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.6
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.58
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.55
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.53
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.49
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.44
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.43
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.41
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.41
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.4
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.38
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.38
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.36
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.36
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.33
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.32
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.32
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.32
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.32
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.32
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.31
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.31
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.31
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.3
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.3
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.29
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.28
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.28
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.28
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.27
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.27
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.27
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.26
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.25
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.24
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.24
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.23
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.22
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.21
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.21
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.2
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.18
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.17
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.17
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.16
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.16
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.16
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.16
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.15
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.15
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.15
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.14
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.14
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.14
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.13
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.13
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.12
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.12
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.12
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.12
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.1
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.09
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.09
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.08
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.07
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.06
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.06
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.05
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.05
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.04
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.04
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.04
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.04
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.04
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.03
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.03
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.03
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.02
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.02
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.02
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.02
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.02
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.02
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.01
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.01
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.01
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.01
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.01
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.0
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.99
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.99
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.99
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.99
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.98
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.98
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.98
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.98
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.97
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.97
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.97
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.97
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.96
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.96
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.96
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.96
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.96
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.96
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.95
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.95
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.94
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.93
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.93
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.93
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.92
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.92
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.92
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.92
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.91
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.89
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.89
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.89
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.88
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.88
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.87
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.87
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.87
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.87
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.86
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.85
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.85
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.85
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.85
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.85
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.84
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.84
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.82
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.81
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.81
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.81
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.81
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.8
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.8
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.8
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.8
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.8
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.79
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.79
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.77
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.77
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.77
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.76
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.76
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.75
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.75
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.75
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.75
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.74
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.74
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.74
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.74
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.74
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.74
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.74
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.73
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.72
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.72
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.72
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.72
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.71
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.71
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.7
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.7
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.7
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.7
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.69
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.68
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.67
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.67
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.66
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.66
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.66
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.65
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.64
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.64
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.64
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.63
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.62
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.62
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.62
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.61
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.6
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.6
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.6
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.6
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.59
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.59
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.59
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.59
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.59
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.58
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.57
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.56
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.56
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.56
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.56
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.56
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.55
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.55
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.55
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.55
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.55
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.55
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.55
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.53
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.53
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.52
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.52
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.51
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.51
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.51
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.49
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.48
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.48
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.48
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.48
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.48
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.47
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.47
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.47
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.47
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.47
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.46
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.46
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.43
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.43
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.43
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.43
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.42
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.41
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.4
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.39
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.39
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.37
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.37
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.37
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.37
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.36
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.35
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.35
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.35
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.35
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.35
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.34
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.34
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.33
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.32
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.32
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.32
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.31
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.31
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.29
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.29
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.29
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.28
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.27
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.27
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.25
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.24
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.23
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.23
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.21
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.2
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.19
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.17
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.17
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.17
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.16
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.14
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.13
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.12
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.12
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.1
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.1
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.07
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.03
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.01
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.0
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.0
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.98
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.95
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.94
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.94
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.94
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.91
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.91
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.89
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.88
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.87
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.86
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.86
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.85
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.85
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.84
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.83
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.82
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.82
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.81
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.8

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=4.9e-18  Score=137.04  Aligned_cols=93  Identities=22%  Similarity=0.352  Sum_probs=85.5

Q ss_pred             CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775         557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ++|.|+..+++..+.+|++++|.|.+.|+|.|.|+||||+.+|..+.+..... .++.++|+|.++.. +|+|.|+|.|.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~   81 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAI   81 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCcc-ccCEEEEEEEE
Confidence            36999999999999999999999999999999999999999998887765554 56778999999999 99999999999


Q ss_pred             cCCcceEEEEEEEEE
Q psy2775         636 NELGSATHGARVTVD  650 (785)
Q Consensus       636 n~~g~~~~~~~l~V~  650 (785)
                      |..|....++.|.|+
T Consensus        82 N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          82 NIAGETSSHAFLLVQ   96 (98)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCcEEEEEEEEEEE
Confidence            999999999999987

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=2.2e-18  Score=138.84  Aligned_cols=91  Identities=25%  Similarity=0.427  Sum_probs=85.8

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.|+..+.++.+.+|+++.|.|.+.|.|.|.|+|+|+|..|..+.++.+...++.++|.|.++.. +|+|.|+|.|.|..
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG-DDKGEYTVRAKNSY   80 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCS-GGGSCEEEEEEETT
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCce-ecCEEEEEEEEECC
Confidence            88999999999999999999999999999999999999999988888777788888999999999 99999999999999


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |....++.|.|.
T Consensus        81 G~~~~~~~l~V~   92 (97)
T d1koaa1          81 GTKEEIVFLNVT   92 (97)
T ss_dssp             EEEEEEECCEEE
T ss_pred             CEEEEEEEEEEe
Confidence            999998888886

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=2.2e-18  Score=137.58  Aligned_cols=92  Identities=21%  Similarity=0.271  Sum_probs=86.8

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      +|.|+..+++..+.+|++++|.|.+.|+|.|.+.|+|++..+..+.+..+...+...+|.|.++.. +|+|.|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKR-ADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCG-GGCEEEEEEEEET
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccc-cccEEEEEEEEEC
Confidence            589999999999999999999999999999999999999999988888888888899999999999 9999999999999


Q ss_pred             CcceEEEEEEEEE
Q psy2775         638 LGSATHGARVTVD  650 (785)
Q Consensus       638 ~g~~~~~~~l~V~  650 (785)
                      .|....++.|.|+
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T d1wiua_          81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999998888874

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.6e-18  Score=136.32  Aligned_cols=91  Identities=22%  Similarity=0.338  Sum_probs=84.5

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.|+..+++..+.+|+++.|.|.+.|.|.|.|.|+|+|..+..+.++.+...+..++|.|.++.. +|+|.|+|.|.|..
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ-EHCGCYTLLVENKL   79 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCT-TTCEEEEEEEECSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCc-ccCEEEEEEEEECC
Confidence            66777788999999999999999999999999999999999988888888888888999999999 99999999999999


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |..+.++.|.|.
T Consensus        80 G~~~~~~~l~V~   91 (101)
T d2cqva1          80 GSRQAQVNLTVV   91 (101)
T ss_dssp             CEEECCEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999988888876

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.74  E-value=8e-18  Score=136.92  Aligned_cols=92  Identities=29%  Similarity=0.495  Sum_probs=85.1

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|...++++.+.+|+++.|.|.+.|.|.|.|.|+|||.+|..+.++.+... .+.++|.|.++.. +|+|.|+|.|.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCG-GGCEEEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCH-HhCEEEEEEEEE
Confidence            59999999999999999999999999999999999999999998888777654 4578899999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|+
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99999999999986

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=8.9e-18  Score=132.12  Aligned_cols=87  Identities=24%  Similarity=0.443  Sum_probs=78.8

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.|+..+.+..+.+|+++.|.|.+.|.|.|+|+|+|||.++..+.++.+  .+  ..|.|.++.. +|+|.|+|.|.|..
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~--~~--~~L~i~~v~~-~D~G~Y~C~a~N~~   76 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV--SG--GELRFSKLVL-EDSGMYQCVAENKH   76 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE--ET--TEEEESSCCG-GGCEEEEEEEEETT
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee--ee--eeEEEEeecc-cCCEEEEEEEEeCC
Confidence            8899999999999999999999999999999999999999987766433  22  3699999999 99999999999999


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |....++.|.|+
T Consensus        77 G~~~~~~~l~V~   88 (89)
T d1cs6a4          77 GTVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            999999999886

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.69  E-value=7.2e-18  Score=133.76  Aligned_cols=89  Identities=21%  Similarity=0.414  Sum_probs=81.8

Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      |+..++++.+.+|++++|.|.+.|+|.|.|.|+++|.++..+.+..+...+...+|.|.++.. +|+|.|+|.|.|..|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~   80 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEGNYSVVVENSEGK   80 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCS-CCCEEEEEECBCSSCB
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCH-HHCEEEEEEEEECCCE
Confidence            455667889999999999999999999999999999999888888888888899999999999 9999999999999999


Q ss_pred             eEEEEEEEEE
Q psy2775         641 ATHGARVTVD  650 (785)
Q Consensus       641 ~~~~~~l~V~  650 (785)
                      ...++.|.|+
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1tnna_          81 QEAEFTLTIQ   90 (91)
T ss_dssp             CCEEEEEECC
T ss_pred             EEEEEEEEEE
Confidence            9988888875

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.67  E-value=2.6e-16  Score=127.74  Aligned_cols=96  Identities=21%  Similarity=0.405  Sum_probs=85.9

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ...+|.|...|.++.+.+|+++.|.|.+.|.|.+.|.|++++..|..+.++.+......   .++|.|.+++.+|+|.|+
T Consensus         5 p~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~   81 (102)
T d1fhga_           5 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYT   81 (102)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEE
T ss_pred             CCCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCc---eeeeEecCCCHHhCEEEE
Confidence            35689999999999999999999999999999999999999999998888877654432   256999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|....++.|.|.
T Consensus        82 C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          82 CKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCcEEEEEEEEEEE
Confidence            9999999999999888875

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4e-16  Score=126.31  Aligned_cols=97  Identities=19%  Similarity=0.325  Sum_probs=86.5

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |.|...|.++.+.+|+++.|.|.+.|.|.+.+.|++++..+....++.+....+.    ++|+|.+++.+|+|.|+|.|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~   76 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG----SKLTILAARQEHCGCYTLLVE   76 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSE----EEEEETTCCTTTCEEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecce----eEEEEeeCCcccCEEEEEEEE
Confidence            7899999999999999999999999999999999999999988888887765543    569999999999999999999


Q ss_pred             cCCeeEEEEeeEEEeCCCCCCC
Q psy2775          93 NREGEAKMDIPVKVNTGKPEKP  114 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~~~~~~~p  114 (785)
                      |..|.....+.|.|.. .|.+|
T Consensus        77 N~~G~~~~~~~l~V~~-~P~pP   97 (101)
T d2cqva1          77 NKLGSRQAQVNLTVVD-KPDPP   97 (101)
T ss_dssp             CSSCEEECCEEEEEEC-SCSCC
T ss_pred             ECCCEEEEEEEEEEEe-cCCCc
Confidence            9999999999999974 33444

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=2.9e-16  Score=123.25  Aligned_cols=87  Identities=20%  Similarity=0.402  Sum_probs=79.5

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |.|...|.++.+.+|+++.|.|.+.|.|.|.|.|++++..+..+.++.+..        ..|.|.+++.+|+|.|+|.|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a~   73 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG--------GELRFSKLVLEDSGMYQCVAE   73 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET--------TEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeee--------eeEEEEeecccCCEEEEEEEE
Confidence            899999999999999999999999999999999999999998888776642        249999999999999999999


Q ss_pred             cCCeeEEEEeeEEEe
Q psy2775          93 NREGEAKMDIPVKVN  107 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~  107 (785)
                      |..|.....+.|.|.
T Consensus        74 N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          74 NKHGTVYASAELTVQ   88 (89)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEEE
Confidence            999998888888874

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=4.4e-16  Score=125.35  Aligned_cols=94  Identities=22%  Similarity=0.386  Sum_probs=82.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .||+|...+.++.+.+|++++|.|.+.|.|.|.++|++++..|..+.+..+....+.   ..+|+|.+++.+|+|.|+|.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccce---EEEEEeccCccccCEEEEEE
Confidence            379999999999999999999999999999999999999999988877665443221   24699999999999999999


Q ss_pred             EEcCCeeEEEEeeEEEe
Q psy2775          91 AKNREGEAKMDIPVKVN  107 (785)
Q Consensus        91 a~~~~~~~~~~~~v~v~  107 (785)
                      |.|..|.....+.|.|.
T Consensus        80 a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          80 AINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCcEEEEEEEEEEE
Confidence            99999999988888885

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=2.5e-16  Score=126.57  Aligned_cols=93  Identities=23%  Similarity=0.297  Sum_probs=83.0

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      .|+|...|.++.+.+|+++.|.|.+.|.|.+.|.|++++..|..+.++.+...++    ...|.|.+++.+|+|.|+|.|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a   76 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN----DYGLTINRVKGDDKGEYTVRA   76 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTT----EEEEEESCCCSGGGSCEEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCC----eeEEEeCCCceecCEEEEEEE
Confidence            4899999999999999999999999999999999999999998877776554443    256999999999999999999


Q ss_pred             EcCCeeEEEEeeEEEeC
Q psy2775          92 KNREGEAKMDIPVKVNT  108 (785)
Q Consensus        92 ~~~~~~~~~~~~v~v~~  108 (785)
                      .|..|.....+.|.|..
T Consensus        77 ~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          77 KNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             EETTEEEEEEECCEEEC
T ss_pred             EECCCEEEEEEEEEEee
Confidence            99999999888888864

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.65  E-value=2.1e-16  Score=124.19  Aligned_cols=86  Identities=33%  Similarity=0.441  Sum_probs=72.5

Q ss_pred             CCeEeeeee-eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFE-EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~-~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|+..+. ...+.+|+++.|.|.+.|.|.|.|+|+|+|.++..+ ++.+ . ++  .|.|.++.. +|+|.|+|.|.|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~-~-~~--~L~i~~v~~-~d~G~Y~C~a~N   75 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV-T-DS--GLVIKGVKN-GDKGYYGCRATN   75 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE-E-TT--EEEESSCCS-TTCEEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE-e-ee--eEEECCCCh-hhCEEEEEEEEE
Confidence            478887664 467899999999999999999999999999999543 3322 2 22  499999999 999999999999


Q ss_pred             CCcceEEEEEEEE
Q psy2775         637 ELGSATHGARVTV  649 (785)
Q Consensus       637 ~~g~~~~~~~l~V  649 (785)
                      ..|....++.|.|
T Consensus        76 ~~G~~~~~~~l~V   88 (89)
T d1biha4          76 EHGDKYFETLVQV   88 (89)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9999998888877

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=2.8e-16  Score=125.07  Aligned_cols=92  Identities=21%  Similarity=0.356  Sum_probs=83.2

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .+|.|..+++++.+.+|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...++.    ++|.|.+++.+|+|.|+|.
T Consensus         1 l~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~c~   76 (93)
T d1wiua_           1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST----TSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTE----EEEECTTBCGGGCEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccc----eeeccccccccccEEEEEE
Confidence            479999999999999999999999999999999999999999988887776665543    5699999999999999999


Q ss_pred             EEcCCeeEEEEeeEEE
Q psy2775          91 AKNREGEAKMDIPVKV  106 (785)
Q Consensus        91 a~~~~~~~~~~~~v~v  106 (785)
                      |.|..|..+..+.|.|
T Consensus        77 a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          77 VKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999999998888876

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.63  E-value=1.4e-16  Score=127.80  Aligned_cols=82  Identities=22%  Similarity=0.405  Sum_probs=70.6

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee-EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      .+.+.+|++++|.|.+.|+|.|.|+|+|||.++..+.+.. .......++|.|.++.. +|+|.|+|.|+|..|....++
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~   92 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGSINHTY   92 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCG-GGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCc-ccCEEEEEEEEECCCEEEEEE
Confidence            3578899999999999999999999999999997665432 22344567899999999 999999999999999999888


Q ss_pred             EEEE
Q psy2775         646 RVTV  649 (785)
Q Consensus       646 ~l~V  649 (785)
                      .|.|
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8877

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=6.1e-16  Score=125.11  Aligned_cols=92  Identities=20%  Similarity=0.444  Sum_probs=75.9

Q ss_pred             CCeEeeeee--eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCC--eeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         558 APLFIERFE--EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       558 ~p~~~~~~~--~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      ||.|.....  +.++..|++++|.|.+.|+|.|.|+|+|+|..+.....  .........++|.|.++.. +|+|.|+|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~   81 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK-NDEAEYVCI   81 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCG-GGCEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCc-ccCEEEEEE
Confidence            477765443  45678899999999999999999999999999865533  3334455667899999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTVD  650 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~  650 (785)
                      |+|..|....++.|.|.
T Consensus        82 a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          82 AENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999999998888885

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=4.6e-16  Score=123.01  Aligned_cols=86  Identities=21%  Similarity=0.314  Sum_probs=71.8

Q ss_pred             CCeEeee-eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIER-FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~-~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|... +++..+.+|++++|.|.+.|+|.|.|.|+|++......      ......+|.|.++.. +|+|.|+|.|+|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~------~~~~~~~L~I~~v~~-~D~G~Y~C~a~N   76 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDF-EDEGTYECEAEN   76 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCG-GGCEEEEEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE------eeeeeeEEEeCCCCc-cCCEEEEEEEEE
Confidence            4676654 57889999999999999999999999999977544322      112345799999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|....++.|.|+
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          77 IKGRDTYQGRIIIH   90 (91)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99999999988885

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=2e-15  Score=118.53  Aligned_cols=86  Identities=26%  Similarity=0.563  Sum_probs=73.8

Q ss_pred             CCeeeecCC-ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          12 PPTFSKKTK-PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        12 ~p~~~~~~~-~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      +|+|...|. .+.+.+|+++.|.|.+.|.|.|.|.|++++..+..+ ++.+..        ..|.|.+++.+|+|.|+|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~--------~~L~i~~v~~~d~G~Y~C~   72 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTD--------SGLVIKGVKNGDKGYYGCR   72 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEET--------TEEEESSCCSTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEee--------eeEEECCCChhhCEEEEEE
Confidence            688988764 578999999999999999999999999999998643 444432        1399999999999999999


Q ss_pred             EEcCCeeEEEEeeEEE
Q psy2775          91 AKNREGEAKMDIPVKV  106 (785)
Q Consensus        91 a~~~~~~~~~~~~v~v  106 (785)
                      |.|..|.....+.|.|
T Consensus        73 a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          73 ATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999999888888776

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=9.2e-16  Score=121.45  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      +.|...++++.+.+|+++.|.|.+.|.|.|.++|+|++..+....+..+...+. .+|.|.++.. +|+|.|+|.|.|..
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~-~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKK-TDEGTYRCEGRILA   79 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCG-GGCEEEEEEEEEGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCH-HhCEEEEEEEEECc
Confidence            678888899999999999999999999999999999999997766554444333 3599999999 99999999999998


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |.......|.|.
T Consensus        80 ~~~~~~~~i~Vi   91 (92)
T d1epfa2          80 RGEINFKDIQVI   91 (92)
T ss_dssp             GTEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            888777777774

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=116.97  Aligned_cols=82  Identities=22%  Similarity=0.353  Sum_probs=67.3

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      |.|+..+++..+.+|+++.|.|.+.|.|.| +|+|+|||..+.....       ..  ++|..... +|+|.|+|.|.|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------~~--~~l~~~~~-~d~G~Y~C~A~N~   71 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SP--SVLNVTGV-TQSTMFSCEAHNL   71 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SS--EEEEECCC-SSCEEEEEEEEET
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------cc--eEEecCCc-cccEEEEEEEEcC
Confidence            889999999999999999999999999998 8999999999864321       22  34445556 8999999999999


Q ss_pred             CcceEE-EEEEEEE
Q psy2775         638 LGSATH-GARVTVD  650 (785)
Q Consensus       638 ~g~~~~-~~~l~V~  650 (785)
                      .|...+ .++|.|+
T Consensus        72 ~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          72 KGLASSRTATVHLQ   85 (85)
T ss_dssp             TEEEECCCEEEEEC
T ss_pred             CCcEEEEEEEEEEC
Confidence            997644 5777663

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.59  E-value=4.5e-16  Score=123.21  Aligned_cols=90  Identities=20%  Similarity=0.375  Sum_probs=79.4

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +|...|+++.+.+|+++.|.|.+.|.|.|.+.|++++..+....+..+......    ++|.|.+++.+|+|.|+|.|.|
T Consensus         1 rii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK----STFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             CCSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSE----EEEECSSCCSCCCEEEEEECBC
T ss_pred             CEEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecce----eEEeecCCCHHHCEEEEEEEEE
Confidence            577889999999999999999999999999999999999988877766655543    5699999999999999999999


Q ss_pred             CCeeEEEEeeEEEe
Q psy2775          94 REGEAKMDIPVKVN  107 (785)
Q Consensus        94 ~~~~~~~~~~v~v~  107 (785)
                      ..|.....+.|.|.
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1tnna_          77 SEGKQEAEFTLTIQ   90 (91)
T ss_dssp             SSCBCCEEEEEECC
T ss_pred             CCCEEEEEEEEEEE
Confidence            99988888777764

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.4e-15  Score=117.08  Aligned_cols=85  Identities=19%  Similarity=0.244  Sum_probs=72.1

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCC--eEEEEEccCCCCCCceeEEEEEEcCCcceE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE--NIILELKEADSETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~  642 (785)
                      +.++++.+|++++|.|.+.|.|.|.|.|+|++..+....+..+.....  .+.|+|.+++. +|+|.|+|.|.|..|...
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCG-GGCEEEEEEESSCTTCEE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCc-ccCEEEEEEEEECCCCEE
Confidence            457899999999999999999999999999999998776655554433  46799999999 999999999999999864


Q ss_pred             -EEEEEEEE
Q psy2775         643 -HGARVTVD  650 (785)
Q Consensus       643 -~~~~l~V~  650 (785)
                       ..+.|.|+
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence             46777775

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.4e-16  Score=123.56  Aligned_cols=89  Identities=16%  Similarity=0.144  Sum_probs=76.3

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCce-eEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG-DYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~a~n  636 (785)
                      .|.|...+.+..+.+|+.++|.|.+.|.|.|.|+|++++..+....  ..........|.|.++.. +|+| .|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~-~d~G~~Y~C~a~N   78 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV--MKSGGLPSLGLTLANVTS-DLNRKNVTCWAEN   78 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE--CCCCCSSEEEEEEESCCS-TTTTCCEEECCEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeee--eeeeeccceeEEEccccc-cccceEEEEEEEc
Confidence            3889999999999999999999999999999999999998774432  223345677899999999 9998 69999999


Q ss_pred             CCcceEEEEEEEE
Q psy2775         637 ELGSATHGARVTV  649 (785)
Q Consensus       637 ~~g~~~~~~~l~V  649 (785)
                      ..|.+..++.|.|
T Consensus        79 ~~G~~~~s~~l~V   91 (92)
T d2ifga1          79 DVGRAEVSVQVNV   91 (92)
T ss_dssp             TTEECCEEECCCC
T ss_pred             CCCEEEEEEEEEE
Confidence            9999988887765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.1e-15  Score=119.57  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=76.8

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEe----cC--CCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPL----LS--SPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i----~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      ||.|...+....+.+|+.++|.|.+.|+|+| .++|+|++...    ..  ..++.+...+..++|+|.++..++|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            5888888889999999999999999999988 69999975322    22  23455666778889999999843799999


Q ss_pred             EEEEEcCCcceEEEEEEEE
Q psy2775         631 KVVATNELGSATHGARVTV  649 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~V  649 (785)
                      +|.|.|..|....++.|.|
T Consensus        82 ~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999999999888887

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.2e-15  Score=115.37  Aligned_cols=86  Identities=20%  Similarity=0.195  Sum_probs=71.0

Q ss_pred             CeEeeee-eeeeeeecCeEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         559 PLFIERF-EEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       559 p~~~~~~-~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      |.++..+ ....+.+|+++.|.|.+. |.|.|+|+|++++.++.     .....+..++|+|.+++. +|+|.|+|+|+|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~L~i~~v~~-~D~G~Y~C~Asn   76 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASL-SAAGTRVCVGSC   76 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC-----CEEEESSEEEEEECSCCG-GGCEEEEEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee-----eeeccCceeeEEcCccCh-hhCCcEEEEEEe
Confidence            4444444 457889999999999985 88999999999887652     123456678899999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..|+.+.++.|.|.
T Consensus        77 ~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          77 GGRTFQHTVQLLVY   90 (90)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEC
Confidence            99999999998874

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=2.8e-15  Score=120.23  Aligned_cols=88  Identities=25%  Similarity=0.387  Sum_probs=74.0

Q ss_pred             CCeEeeeeeeeeeeec---CeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         558 APLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +|.|+..+.+..+.+|   ++++|.|.+.|.|.|.++|+|||..+..+.+......++ ..|+|..+.. +|+|.|+|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~-~d~G~Y~C~a   81 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKA-KDAGSYQCVA   81 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHH-HHCEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccc-cCCEEEEEEE
Confidence            4999999988888776   799999999999999999999999998776655555544 4688888888 9999999999


Q ss_pred             EcCCcceEE-EEEE
Q psy2775         635 TNELGSATH-GARV  647 (785)
Q Consensus       635 ~n~~g~~~~-~~~l  647 (785)
                      +|..|...+ +++|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            999998753 4554

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3.8e-15  Score=117.49  Aligned_cols=85  Identities=24%  Similarity=0.371  Sum_probs=70.3

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .++..++...+.+|++++|.|.+. |.|.|.|.|+|++..+..+..   ...+  .+|+|.++.. +|+|.|+|.|+|..
T Consensus         4 v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~   77 (89)
T d1gl4b_           4 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---MDFN--GILTIRNVQP-SDAGTYVCTGSNMF   77 (89)
T ss_dssp             EEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE---EEET--TEEEECSCCG-GGCEEEEEEEECSS
T ss_pred             EEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc---Eeec--eEEEEecCCc-ccCEEEEEEEEECC
Confidence            344556788999999999999997 678899999999988765432   2222  3699999999 99999999999999


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      |....+++|.|+
T Consensus        78 G~~~~~~~l~V~   89 (89)
T d1gl4b_          78 AMDQGTATLHVQ   89 (89)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999998888874

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.55  E-value=1.1e-14  Score=116.47  Aligned_cols=88  Identities=20%  Similarity=0.310  Sum_probs=72.3

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEE--eeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~--~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      |.|+  .++..+.+|++++|.|.+.|+|.|.|.|+|+|.++.......+.  ......+|.|.+++. +|+|.|+|.|.|
T Consensus         6 p~~~--~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N   82 (97)
T d1biha3           6 PQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP-EDEGVYTCEVDN   82 (97)
T ss_dssp             EEEE--CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCG-GGCEEEEEEECC
T ss_pred             CeeC--CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccc-cccEEEEEEEEE
Confidence            4444  36889999999999999999999999999999999766554443  233456899999999 999999999999


Q ss_pred             CCcceE-EEEEEEE
Q psy2775         637 ELGSAT-HGARVTV  649 (785)
Q Consensus       637 ~~g~~~-~~~~l~V  649 (785)
                      ..|... .++.|.|
T Consensus        83 ~~G~~~s~s~~L~V   96 (97)
T d1biha3          83 GVGKPQKHSLKLTV   96 (97)
T ss_dssp             SSSSCEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            999865 4567766

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=114.91  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=68.8

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+..+   .........+|.|.++.. +|+|.|+|.|.|..|..+.++.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSF-GNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS---EEEEETTEEEEEESSCCG-GGCSEEEEEEEETTEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceee---eeeeecCCcEEEEecccc-cccceEEEEEEeCCCEEEEEEE
Confidence            456678999999999999999999999988766433   234556778899999999 9999999999999999999888


Q ss_pred             EEEE
Q psy2775         647 VTVD  650 (785)
Q Consensus       647 l~V~  650 (785)
                      |.|.
T Consensus        86 v~V~   89 (90)
T d1vcaa2          86 VEIY   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.1e-15  Score=118.52  Aligned_cols=91  Identities=14%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe---CCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~---~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +|.|. .+.+..+.+|++++|.|.+.|.|.|.+.|++   ++..+.......+......++|.|.++.. +|+|.|+|.|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCG-GGCSEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCH-HHCeEEEEEE
Confidence            58997 5899999999999999999999998766543   22222211112222233456899999999 9999999999


Q ss_pred             EcCCcceEEE-EEEEEE
Q psy2775         635 TNELGSATHG-ARVTVD  650 (785)
Q Consensus       635 ~n~~g~~~~~-~~l~V~  650 (785)
                      .|..|+..++ +.|.|+
T Consensus        80 ~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          80 RTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCeEEEEEEEEEEC
Confidence            9999997655 788874

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=9.1e-15  Score=115.60  Aligned_cols=90  Identities=20%  Similarity=0.295  Sum_probs=74.9

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      +.|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....+..+....+.     +|.|.+++.+|+|.|+|.|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~   76 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGR   76 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS-----CEEETTCCGGGCEEEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee-----eEEECCCCHHhCEEEEEEEE
Confidence            6899999999999999999999999999999999999998876655444333321     39999999999999999999


Q ss_pred             cCCeeEEEEeeEEEe
Q psy2775          93 NREGEAKMDIPVKVN  107 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~  107 (785)
                      |..+.......+.|.
T Consensus        77 n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          77 ILARGEINFKDIQVI   91 (92)
T ss_dssp             EGGGTEEEEEEEEEE
T ss_pred             ECcCCEEEEEEEEEE
Confidence            987766666666553

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.54  E-value=9.8e-15  Score=120.47  Aligned_cols=91  Identities=24%  Similarity=0.354  Sum_probs=70.5

Q ss_pred             CCeEeee-eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecC----CCCeeE---------EeeCCeEEEEEccCCC
Q psy2775         558 APLFIER-FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS----SPKKRE---------IFDGENIILELKEADS  623 (785)
Q Consensus       558 ~p~~~~~-~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~----~~~~~~---------~~~~~~~~L~i~~~~~  623 (785)
                      +|.|... ++++++.+|++++|.|.+.|.|.|.|.|+|++.....    ......         ......++|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4888765 5889999999999999999999999999997654211    111000         1122356899999999


Q ss_pred             CCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775         624 ETDAGDYKVVATNELGSATHGARVTV  649 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~~g~~~~~~~l~V  649 (785)
                       +|+|.|+|.|.|..|.+..++.|.|
T Consensus        84 -~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 -EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             -GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             -HHCeEEEEEEEECCCEEEEEEEEEE
Confidence             9999999999999999999999887

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.4e-16  Score=118.39  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      +.++++.+|+.+.|.|.+.|+|.|+|+|+|+|..+....             .+.+++. +|+|.|+|+|.|.+|+.+.+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~-~d~G~Y~C~A~N~~G~~~~~   76 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTR-DLEGTYLCRARSTQGEVTRE   76 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCG-GGCEEEEEEEEETTEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeecccc-CCCCEEEEEEEcCCCEEEEE
Confidence            457899999999999999999999999999998775432             2345677 99999999999999999988


Q ss_pred             EEEEEE
Q psy2775         645 ARVTVD  650 (785)
Q Consensus       645 ~~l~V~  650 (785)
                      +.|.|.
T Consensus        77 ~~l~V~   82 (84)
T d2oz4a3          77 VTVNVL   82 (84)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888886

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.54  E-value=5e-15  Score=118.14  Aligned_cols=84  Identities=15%  Similarity=0.262  Sum_probs=72.1

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .|.|...+.+..+.+|++++|.|.+.|.|.| .|.|++||..+..+...... ....++|.|.++.. +|+|.|+|.|.|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-~~~~~~L~i~~v~~-~D~G~Y~C~a~N   79 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-RKDEGSLVFLRPQA-SDEGHYQCFAET   79 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-CTTSCCEEESSCCG-GGCEEEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-cccceEEEEeccCh-hcCeEEEEEEEe
Confidence            4889999999999999999999999999977 79999999999765544333 34456799999999 999999999999


Q ss_pred             CCcceEE
Q psy2775         637 ELGSATH  643 (785)
Q Consensus       637 ~~g~~~~  643 (785)
                      ..|.+.+
T Consensus        80 ~~G~~~s   86 (94)
T d1biha1          80 PAGVASS   86 (94)
T ss_dssp             TTEEEEC
T ss_pred             CCCEEEE
Confidence            9997654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.8e-15  Score=114.33  Aligned_cols=73  Identities=10%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR  646 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  646 (785)
                      +..+.+|++++|.|.+.|.|+|.|.|++++..+..+          ..+|.|.++.. +|+|.|+|.|+|..|....++.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~----------~~~l~i~~v~~-~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG----------GKTLSVSQLEL-QDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE----------SSEEEESSCCG-GGCEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceee----------eeeeeeeeccc-ccccEEEEEEEeCCCEEEEEEE
Confidence            557899999999999999999999999977654322          23589999999 9999999999999999998888


Q ss_pred             EEEE
Q psy2775         647 VTVD  650 (785)
Q Consensus       647 l~V~  650 (785)
                      |.|.
T Consensus        77 v~V~   80 (84)
T d2nxyb2          77 IVVL   80 (84)
T ss_dssp             ECEE
T ss_pred             EEEE
Confidence            8876

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-14  Score=118.60  Aligned_cols=91  Identities=22%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCC---CCceEEEeCCEEecCC-CCeeEE--e------eCCeEEEEEccCCCCCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSS-PKKREI--F------DGENIILELKEADSETD  626 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P---~p~v~W~~~~~~i~~~-~~~~~~--~------~~~~~~L~i~~~~~~~d  626 (785)
                      |.|+..+++.++.+|++++|.|.+.|.|   .|.|.|+|++...... ...++.  .      ....+.|.|.+++. +|
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D   83 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP-AF   83 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCT-TC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCH-HH
Confidence            7889999999999999999999999999   5789999988644322 211111  1      11346899999999 99


Q ss_pred             ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         627 AGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       627 ~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|.|+|.|+|..|...+++.|.|+
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEE
Confidence            999999999999999999999997

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.5e-14  Score=116.77  Aligned_cols=93  Identities=31%  Similarity=0.509  Sum_probs=74.6

Q ss_pred             CCCeeeecCCc--eEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          11 IPPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~--~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .||.|...+..  .++.+|++++|.|.+.|.|.|.|.|++++..+......  ......+.    ++|.|.+++.+|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~   77 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAE   77 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTS----CEEEECSCCGGGCEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCc----eEEEeCCCCcccCEE
Confidence            48999876664  56788999999999999999999999999988654321  11111111    469999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEe
Q psy2775          87 YTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|.|..|.....+.|.|.
T Consensus        78 Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          78 YVCIAENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEEE
Confidence            999999999999998888886

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-14  Score=114.10  Aligned_cols=89  Identities=19%  Similarity=0.290  Sum_probs=74.6

Q ss_pred             CCCCeEeeeeee-eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC-CeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775         556 GQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-KKREIFDGENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       556 ~~~p~~~~~~~~-~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      ..+|.|+..+.+ ..|.+|+++.|.|.+. .|.|.++|||||.+|..+. ++.+...++.++|+|.++.. +|+|.|+|.
T Consensus         3 ~~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~   80 (94)
T d1pd6a_           3 KKSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSL-ADDAAYQCV   80 (94)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSS-SSCEEEEEE
T ss_pred             CCCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCc-eecEEEEEE
Confidence            356888888865 5799999999999995 5999999999999997654 56677788889999999999 999999999


Q ss_pred             EEcCCcceEEEEEEEEE
Q psy2775         634 ATNELGSATHGARVTVD  650 (785)
Q Consensus       634 a~n~~g~~~~~~~l~V~  650 (785)
                      |.|.    ..++.|.|+
T Consensus        81 a~n~----~~s~~l~V~   93 (94)
T d1pd6a_          81 VGGE----KCSTELFVK   93 (94)
T ss_dssp             ETTE----EECCEEEEE
T ss_pred             EeeE----EEEEEEEEE
Confidence            9764    556677775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=1.1e-14  Score=115.02  Aligned_cols=88  Identities=20%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             CCCCeeeec-CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..||.|... |..+.+.+|++++|.|.+.|.|.|.|.|++++.......    ...+      ++|+|.+++.+|+|.|+
T Consensus         2 ~~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~----~~~~------~~L~I~~v~~~D~G~Y~   71 (91)
T d1cs6a3           2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----LSSE------PLLHIQNVDFEDEGTYE   71 (91)
T ss_dssp             CEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----SBSS------SEEEECSCCGGGCEEEE
T ss_pred             ccCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe----eeee------eEEEeCCCCccCCEEEE
Confidence            457888764 789999999999999999999999999999775432211    1111      35999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.....+.|.|.
T Consensus        72 C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          72 CEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            9999999999888888774

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-14  Score=116.69  Aligned_cols=101  Identities=13%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecC---CCeeEEEECCEEc---cCCCCEEEee--cCCccceEEEEEEcccCCCCCe
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPL---QETDEVVFSD--QSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~i~W~~~~~~~---~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      .|...|.++.+.+|++++|.|.+.|.|   .|.|.|++++...   ....++.+..  ........+.|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            478899999999999999999999988   4799999987542   2233333322  2333345577999999999999


Q ss_pred             EEEEEEEcCCeeEEEEeeEEEeCCCCCCC
Q psy2775          86 VYTVVAKNREGEAKMDIPVKVNTGKPEKP  114 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p  114 (785)
                      .|+|.|.|..|.....+.|.|.......|
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~~p  110 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHESTGTTP  110 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCCCcCC
Confidence            99999999999999999999975444444

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.6e-15  Score=122.50  Aligned_cols=93  Identities=26%  Similarity=0.294  Sum_probs=73.3

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCC---CCceEEEeCCEEec---CCCCeeEEe------eCCeEEEEEccCCCCCCc
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLL---SSPKKREIF------DGENIILELKEADSETDA  627 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P---~p~v~W~~~~~~i~---~~~~~~~~~------~~~~~~L~i~~~~~~~d~  627 (785)
                      .|+..++++.+.+|++++|.|.+.|.|   .|.|.|+|++....   ...+.....      ....+.|.|.++.. +|+
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~   80 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFA   80 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSC
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCH-HHC
Confidence            466777899999999999999999998   57999999875432   122222111      12346799999999 999


Q ss_pred             eeEEEEEEcCCcceEEEEEEEEEeec
Q psy2775         628 GDYKVVATNELGSATHGARVTVDVEK  653 (785)
Q Consensus       628 G~Y~C~a~n~~g~~~~~~~l~V~~~~  653 (785)
                      |.|+|.|.|..|..++++.|.|....
T Consensus        81 G~Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          81 GNYRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCC
T ss_pred             eEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            99999999999999999999997443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.52  E-value=5.9e-15  Score=118.12  Aligned_cols=91  Identities=16%  Similarity=0.290  Sum_probs=71.9

Q ss_pred             CCeeeec----CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEe-ecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFSKK----TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFS-DQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~~~----~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +|.|..+    +..+.+.+|+++.|.|.+.|.|.|.|.|++++..+....+.... ...+.    ++|.|.+++.+|+|.
T Consensus         1 AP~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~   76 (97)
T d3dara1           1 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGN   76 (97)
T ss_dssp             EEEESCSTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEE
T ss_pred             CCccccccccccccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCc----EEEEECCCCcccCEE
Confidence            3566543    33578899999999999999999999999999998665432111 11111    359999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEE
Q psy2775          87 YTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+|.|.|..|.....+.|.|
T Consensus        77 Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          77 YTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999988888877

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.8e-14  Score=112.21  Aligned_cols=84  Identities=26%  Similarity=0.499  Sum_probs=71.2

Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCC--eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |..++++..+.+|++++|.|.+. .|.|.+.|+|+|.++..+.+  +.+..++..++|.|.++.. +|+|.|+|.|.|. 
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~-   79 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK-ADAAEYSVMTTGG-   79 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECT-TTCSEEEEEETTE-
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECcccc-ccCEEEEEEEecc-
Confidence            44567899999999999999994 68899999999999876654  5566677889999999999 9999999999774 


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                         ..+++|.|+
T Consensus        80 ---~~~a~l~V~   88 (90)
T d1x44a1          80 ---QSSAKLSVD   88 (90)
T ss_dssp             ---EEEEEEEEE
T ss_pred             ---eEEEEEEEE
Confidence               556778876

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-13  Score=114.01  Aligned_cols=98  Identities=11%  Similarity=0.149  Sum_probs=78.3

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecC---CCeeEEEECCEEcc-C--CCCEEEee--cCCccceEEEEEEcccCCC
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPLQ-E--TDEVVFSD--QSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~i~W~~~~~~~~-~--~~~~~~~~--~~~~~~~~~~L~i~~~~~~   82 (785)
                      ..|.|...|.++.+.+|++++|.|.+.|.|   .|.|.|++++.... .  ..++....  ......+.++|.|.+++.+
T Consensus         3 p~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             TTCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             CCCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            457899999999999999999999999988   57899999875432 2  22333222  2223345678999999999


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      |+|.|+|.|.|..|.....+.|.|..
T Consensus        83 D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          83 FTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             HCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            99999999999999999999999863

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.3e-14  Score=109.76  Aligned_cols=81  Identities=20%  Similarity=0.346  Sum_probs=66.5

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      |.|...|.++.+.+|+++.|.|.+.|.|.| .|+|++|+..+.....             ..+.|.....+|+|.|+|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------------~~~~l~~~~~~d~G~Y~C~A   68 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------------SPSVLNVTGVTQSTMFSCEA   68 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------------SSEEEEECCCSSCEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------------cceEEecCCccccEEEEEEE
Confidence            899999999999999999999999999987 8999999998865421             11445566678999999999


Q ss_pred             EcCCeeEE-EEeeEEE
Q psy2775          92 KNREGEAK-MDIPVKV  106 (785)
Q Consensus        92 ~~~~~~~~-~~~~v~v  106 (785)
                      .|..|... ..+.|.|
T Consensus        69 ~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          69 HNLKGLASSRTATVHL   84 (85)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            99999654 3566665

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.9e-14  Score=115.18  Aligned_cols=79  Identities=23%  Similarity=0.318  Sum_probs=66.2

Q ss_pred             eecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-----CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775         571 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-----GENIILELKEADSETDAGDYKVVATNELGSATHGA  645 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-----~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~  645 (785)
                      ..+....|.|.+.|+|.|+|.|+|||..|..+.+..+...     ...++|.|.+++. +|+|.|+|.|+|.+|+++.++
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH-MNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEECSSCEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCH-HhCceEEEEEeccCCEEEEEE
Confidence            4577888999999999999999999999987766544322     1245799999999 999999999999999998877


Q ss_pred             EEEEE
Q psy2775         646 RVTVD  650 (785)
Q Consensus       646 ~l~V~  650 (785)
                      .|.|.
T Consensus        93 ~v~V~   97 (103)
T d1wwbx_          93 SAHFM   97 (103)
T ss_dssp             EECCS
T ss_pred             EEEEE
Confidence            77664

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=123.12  Aligned_cols=86  Identities=21%  Similarity=0.312  Sum_probs=71.8

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC-----------------------------CCeeEEeeCCeE
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-----------------------------PKKREIFDGENI  614 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-----------------------------~~~~~~~~~~~~  614 (785)
                      .+..+++.+|++++|.|.+.|.|.|.|.|+|++..+...                             .+..+......+
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            345778999999999999999999999999987655322                             123444556778


Q ss_pred             EEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       615 ~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|+|.++.. +|+|.|+|.|+|.+|++..++.|.|.
T Consensus        95 ~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEK-EDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCT-TTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEECcCCh-hcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            999999999 99999999999999999988888874

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.3e-14  Score=112.74  Aligned_cols=92  Identities=18%  Similarity=0.301  Sum_probs=74.7

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEc----cC--CCCEEEeecCCccceEEEEEEcccC-CC
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPL----QE--TDEVVFSDQSDMHSYVSIVTIKSIK-KR   82 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~----~~--~~~~~~~~~~~~~~~~~~L~i~~~~-~~   82 (785)
                      +||.|...+..+.+.+|++++|.|.+.|.|++ .+.|++++...    ..  ..++.+.....    .++|+|.+++ .+
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I~~v~~~~   76 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG----RSELHIENLNMEA   76 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT----EEEEEECSCCTTT
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCC----EEEEEEecccccc
Confidence            59999999999999999999999999999887 79999976422    11  23344444332    3579999998 57


Q ss_pred             CCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          83 EEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        83 D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      |+|.|+|.|.|..|.....+.|.|
T Consensus        77 D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999988888877

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.9e-14  Score=117.00  Aligned_cols=91  Identities=19%  Similarity=0.269  Sum_probs=71.7

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCC-CCceEEEeCCEEecCC-CC-ee-EEeeC--CeEEEEEccCCCCCCceeEEE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSS-PK-KR-EIFDG--ENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~i~~~-~~-~~-~~~~~--~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      +.|+..++...+.+|++++|.|.+.|.| .|.|+|+|++..+... .+ .. ....+  ...+|.|.++.. +|+|.|+|
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C   82 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLP-NDNGSYRC   82 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCG-GGCEEEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccH-HHCCeEEE
Confidence            6677888899999999999999999999 5899999988765322 11 21 22222  245799999999 99999999


Q ss_pred             EEEcCCcceEE-EEEEEEE
Q psy2775         633 VATNELGSATH-GARVTVD  650 (785)
Q Consensus       633 ~a~n~~g~~~~-~~~l~V~  650 (785)
                      .|.|..|...+ ++.|.|.
T Consensus        83 ~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          83 SANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEETTEEEECCCEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEEEE
Confidence            99999998654 6777775

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.5e-14  Score=111.67  Aligned_cols=88  Identities=16%  Similarity=0.359  Sum_probs=73.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE   97 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~   97 (785)
                      .|.++.+.+|++++|.|.+.|.|.+.+.|++++..+....+..+......  ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQH--WIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTE--EEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccC--ceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            47889999999999999999999999999999999987776655544432  2356999999999999999999999986


Q ss_pred             E-EEEeeEEEe
Q psy2775          98 A-KMDIPVKVN  107 (785)
Q Consensus        98 ~-~~~~~v~v~  107 (785)
                      . +..+.|.|.
T Consensus        80 ~~S~~~~l~V~   90 (91)
T d1rhfa1          80 EISQPVWLTVE   90 (91)
T ss_dssp             EECCCEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            5 345666663

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-13  Score=111.63  Aligned_cols=96  Identities=25%  Similarity=0.335  Sum_probs=78.6

Q ss_pred             cCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775           9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus         9 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      +..||+|......   ..+....|.|.+.|.|.|.+.|++++..+..+.+..+....+.....+.|.|.+++.+|+|.|+
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            4578888654332   3455677889999999999999999999988877766555444555678999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.++.++.|.|.
T Consensus        79 C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             EEEEETTEEEEEEEEECCS
T ss_pred             EEEEcCCCEEEEEEEEEEE
Confidence            9999999999999888886

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.5e-13  Score=110.00  Aligned_cols=87  Identities=22%  Similarity=0.296  Sum_probs=67.4

Q ss_pred             eeeeeeeeeecCeEEEEEEEecCCC-CceEEEe-CCEEecC-CCCeeEE-eeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFR-NNKPLLS-SPKKREI-FDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~-~~~~i~~-~~~~~~~-~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      ..+....+.+|+++.|.|.+.|.|+ |.|.|+| ++..+.. +.++... ..+..++|.|.+++. +|+|.|+|.|.|..
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI-DDAGIYKCVVTAED   83 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETT
T ss_pred             EECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCch-hhceEEEEEEEeCC
Confidence            3445778999999999999999986 6999999 5555544 3444443 345678899999999 99999999999999


Q ss_pred             cce-EEEEEEEEE
Q psy2775         639 GSA-THGARVTVD  650 (785)
Q Consensus       639 g~~-~~~~~l~V~  650 (785)
                      |.. .+++.|.|.
T Consensus        84 G~~~~~tv~l~V~   96 (97)
T d1epfa1          84 GTQSEATVNVKIF   96 (97)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            974 345566553

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.8e-14  Score=109.00  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      |+.|..++..+.+.+|+++.|+|.+. |.|.+.|.|++++.++..   ....  .    ..++|+|.+++.+|+|.|+|.
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---~~~~--~----~~~~L~i~~v~~~D~G~Y~C~   73 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA---VQSD--T----GRSVLTVRNASLSAAGTRVCV   73 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---EEEE--S----SEEEEEECSCCGGGCEEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---eecc--C----ceeeEEcCccChhhCCcEEEE
Confidence            34444445668899999999999984 788999999987765521   1111  1    236799999999999999999


Q ss_pred             EEcCCeeEEEEeeEEEe
Q psy2775          91 AKNREGEAKMDIPVKVN  107 (785)
Q Consensus        91 a~~~~~~~~~~~~v~v~  107 (785)
                      |.|..+..+.++.|.|+
T Consensus        74 Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          74 GSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEC
Confidence            99999999988888774

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=3.8e-14  Score=116.86  Aligned_cols=85  Identities=21%  Similarity=0.332  Sum_probs=66.5

Q ss_pred             eeeeeeecCeEEEEEEEe-cCCCCceEEEeCCEEecCCCCee--------EEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         566 EEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKR--------EIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~--------~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      ....+.+|++++|.|.+. |+|.|.|+|+|++..+.......        .........|.|.+++. +|+|.|+|.|+|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C~a~N   88 (110)
T d1f97a2          10 VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA-FDSGEYYCQAQN   88 (110)
T ss_dssp             CCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCG-GGCEEEEEEEEC
T ss_pred             CCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCc-cCCEEEEEEEEE
Confidence            345789999999999985 89999999999999886544321        22233455799999999 999999999999


Q ss_pred             CCcceEEEEEEEEEe
Q psy2775         637 ELGSATHGARVTVDV  651 (785)
Q Consensus       637 ~~g~~~~~~~l~V~~  651 (785)
                      ..|+..++..+.++|
T Consensus        89 ~~G~~~~s~~v~l~V  103 (110)
T d1f97a2          89 GYGTAMRSEAAHMDA  103 (110)
T ss_dssp             SSSCCEECCCEEEEE
T ss_pred             CCCcEEEEEEEEEEE
Confidence            999998876666664

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.47  E-value=6.3e-15  Score=115.41  Aligned_cols=85  Identities=22%  Similarity=0.236  Sum_probs=75.2

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      .|..++++.++.+|+++.|.|.+ +.|.|.+.|+|||.++..+.++.+..++..++|.|.++.. +|+|.|+|.|.|..+
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQL-GMTGEVSFQAANAKS   80 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCS-CCCSEECCBCSSCBC
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCCh-hcCEEEEEEECceEE
Confidence            35567789999999999999998 5799999999999999999999999999999999999999 999999999987654


Q ss_pred             ceEEEEEEEEE
Q psy2775         640 SATHGARVTVD  650 (785)
Q Consensus       640 ~~~~~~~l~V~  650 (785)
                          ++.|.|+
T Consensus        81 ----sa~l~V~   87 (89)
T d1tiua_          81 ----AANLKVK   87 (89)
T ss_dssp             ----CEEEEEE
T ss_pred             ----EEEEEEE
Confidence                5667765

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-13  Score=109.86  Aligned_cols=95  Identities=21%  Similarity=0.390  Sum_probs=77.4

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCC-ccceEEEEEEcccCCCCCeEEE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD-MHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ..||.|+....   ...++.+.|.|.+.|.|.|.|.|++++..|..+.+..+..... .....++|+|.+++.+|+|.|+
T Consensus         2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            57888865332   2478889999999999999999999999998877665543322 2223567999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.++..+.|.|.
T Consensus        79 C~a~N~~G~~~~~~~v~V~   97 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             EEEECSSCEEEEEEEECCS
T ss_pred             EEEeccCCEEEEEEEEEEE
Confidence            9999999999999888886

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.1e-15  Score=116.42  Aligned_cols=90  Identities=16%  Similarity=0.090  Sum_probs=74.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe-EEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG-VYTV   89 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C   89 (785)
                      +.|.|...+.+..+.+|+++.|.|.+.|.|.|.|.|++++..+......      ........|+|.+++.+|.| .|+|
T Consensus         1 G~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~------~~~~~~~~L~i~~~~~~d~G~~Y~C   74 (92)
T d2ifga1           1 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK------SGGLPSLGLTLANVTSDLNRKNVTC   74 (92)
T ss_dssp             CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC------CCCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             CCCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee------eeeccceeEEEccccccccceEEEE
Confidence            4799999999999999999999999999999999999998766432211      11122356999999999999 6999


Q ss_pred             EEEcCCeeEEEEeeEEE
Q psy2775          90 VAKNREGEAKMDIPVKV  106 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v  106 (785)
                      .|.|..|....++.|.|
T Consensus        75 ~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          75 WAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CCEETTEECCEEECCCC
T ss_pred             EEEcCCCEEEEEEEEEE
Confidence            99999998877776654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=3.8e-14  Score=113.48  Aligned_cols=91  Identities=23%  Similarity=0.394  Sum_probs=73.8

Q ss_pred             CCCCeeeecCCceEecCC---CeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          10 GIPPTFSKKTKPVYAEEN---SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ..+|.|...|.++.+.+|   ++++|.|.+.|.|.|.++|++++..+....+..+...++     ..|.|..++.+|+|.
T Consensus         2 ~~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~   76 (97)
T d1cs6a1           2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-----DLVISNPVKAKDAGS   76 (97)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-----EEEEESCCHHHHCEE
T ss_pred             CcCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-----eEEEEecccccCCEE
Confidence            457999999999998776   799999999999999999999999987665443333332     358899999999999


Q ss_pred             EEEEEEcCCeeEEE-EeeEE
Q psy2775          87 YTVVAKNREGEAKM-DIPVK  105 (785)
Q Consensus        87 Y~C~a~~~~~~~~~-~~~v~  105 (785)
                      |+|.|.|..|...+ .+.|+
T Consensus        77 Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          77 YQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEe
Confidence            99999999997643 45543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-15  Score=121.18  Aligned_cols=92  Identities=18%  Similarity=0.301  Sum_probs=72.7

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEe-------eCCeEEEEEccCCCCCCceeE
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIF-------DGENIILELKEADSETDAGDY  630 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~-------~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      |.+.....+..+.+|+.++|.|.+ .|.|.|.+.|+|++..+....+.....       ....+.|.|.++.. +|+|.|
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y   81 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEY   81 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG-GGCCCE
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCc-ccCcEE
Confidence            444333446678999999999998 589999999999999886655433222       22345799999999 999999


Q ss_pred             EEEEEcCCcceEEEEEEEEEe
Q psy2775         631 KVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       631 ~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      +|.|.|..|+...++.|.|++
T Consensus        82 ~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             EEEEECSSSCCEECCCBCCEE
T ss_pred             EEEEEECCCceEEEEEEEEEE
Confidence            999999999999888777764

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=1.7e-13  Score=109.44  Aligned_cols=90  Identities=19%  Similarity=0.283  Sum_probs=70.9

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |.|.  +.++.+.+|+++.|.|.+.|.|.+.+.|++++..+.......+........  ++|+|.+++.+|+|.|+|.|.
T Consensus         6 p~~~--~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~   81 (97)
T d1biha3           6 PQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG--KRLLFKTTLPEDEGVYTCEVD   81 (97)
T ss_dssp             EEEE--CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTT--SEEEESSCCGGGCEEEEEEEC
T ss_pred             CeeC--CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCC--CEEEEEeccccccEEEEEEEE
Confidence            4444  578999999999999999999999999999999987655443332222222  459999999999999999999


Q ss_pred             cCCeeE-EEEeeEEE
Q psy2775          93 NREGEA-KMDIPVKV  106 (785)
Q Consensus        93 ~~~~~~-~~~~~v~v  106 (785)
                      |..|.. ...+.|.|
T Consensus        82 N~~G~~~s~s~~L~V   96 (97)
T d1biha3          82 NGVGKPQKHSLKLTV   96 (97)
T ss_dssp             CSSSSCEEEEEEEEE
T ss_pred             ECCCcEEEEEEEEEE
Confidence            999865 44667766

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.7e-14  Score=112.88  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=63.4

Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee----CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD----GENIILELKEADSETDAGDYKVVATNELGSATHGARV  647 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~----~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  647 (785)
                      .+....|.|.+.|+|.|+++|+|||+++..+.+......    ...+.|.|.++.. +|+|.|+|.|+|..|.++.++.|
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~v   94 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH-YNNGNYTLIAKNPLGTANQTING   94 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeeccc-ccceEEEEEEEcCCCEEEEEEEE
Confidence            344567889999999999999999999987776544321    1246799999999 99999999999999988887776


Q ss_pred             EEE
Q psy2775         648 TVD  650 (785)
Q Consensus       648 ~V~  650 (785)
                      .|.
T Consensus        95 ~V~   97 (105)
T d1wwca_          95 HFL   97 (105)
T ss_dssp             CCS
T ss_pred             EEE
Confidence            654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=6.9e-14  Score=111.34  Aligned_cols=84  Identities=17%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      +|.|...|.++.+.+|++++|.|.+.|.|.+ .+.|+++|..+...........++     ++|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~   76 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-----GSLVFLRPQASDEGHYQCF   76 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTS-----CCEEESSCCGGGCEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccc-----eEEEEeccChhcCeEEEEE
Confidence            6999999999999999999999999999865 799999999886655433333222     2499999999999999999


Q ss_pred             EEcCCeeEEE
Q psy2775          91 AKNREGEAKM  100 (785)
Q Consensus        91 a~~~~~~~~~  100 (785)
                      |.|..|....
T Consensus        77 a~N~~G~~~s   86 (94)
T d1biha1          77 AETPAGVASS   86 (94)
T ss_dssp             EEETTEEEEC
T ss_pred             EEeCCCEEEE
Confidence            9999997543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.1e-13  Score=106.22  Aligned_cols=81  Identities=21%  Similarity=0.251  Sum_probs=72.2

Q ss_pred             CceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775         121 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV  200 (785)
Q Consensus       121 ~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  200 (785)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+............+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence            34566789999999999999999999999887776666667777889999999999999999999999999999999988


Q ss_pred             e
Q psy2775         201 D  201 (785)
Q Consensus       201 ~  201 (785)
                      .
T Consensus        89 ~   89 (90)
T d1vcaa2          89 Y   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=112.34  Aligned_cols=96  Identities=14%  Similarity=0.195  Sum_probs=71.7

Q ss_pred             CCCeeeec-CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC----CC--EEEee---cCCccceEEEEEEcccC
Q psy2775          11 IPPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET----DE--VVFSD---QSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        11 ~~p~~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----~~--~~~~~---~~~~~~~~~~L~i~~~~   80 (785)
                      .+|.|... |.++++.+|++++|.|.+.|.|.|.|.|++++......    ..  .....   ........++|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46888765 79999999999999999999999999999976542111    11  11110   00112234779999999


Q ss_pred             CCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775          81 KREEGVYTVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~~~~~~~~~v~v  106 (785)
                      .+|+|.|+|.|.|..|....++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999888877

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.6e-13  Score=107.88  Aligned_cols=84  Identities=14%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             eeeecCCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      .+...|+.+.+.+|+++.|.|.+. +.|.+.+.|++++..+...... ..  +      ++|+|.+++.+|+|.|+|.|.
T Consensus         4 v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-~~--~------~~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1gl4b_           4 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-DF--N------GILTIRNVQPSDAGTYVCTGS   74 (89)
T ss_dssp             EEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-EE--T------TEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE-ee--c------eEEEEecCCcccCEEEEEEEE
Confidence            345568889999999999999996 6688999999998876554322 11  1      249999999999999999999


Q ss_pred             cCCeeEEEEeeEEE
Q psy2775          93 NREGEAKMDIPVKV  106 (785)
Q Consensus        93 ~~~~~~~~~~~v~v  106 (785)
                      |..|.....+.|.|
T Consensus        75 N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          75 NMFAMDQGTATLHV   88 (89)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99999888888876

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=111.93  Aligned_cols=94  Identities=11%  Similarity=0.162  Sum_probs=72.6

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecC-CCeeEEEECCEEccC---CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGEPLQE---TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .|.|...++...+.+|+++.|.|.+.|.| .|.|+|+|++..+..   .........+  .....+|+|.+++.+|+|.|
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y   80 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEK--NISFFILHFEPVLPNDNGSY   80 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECS--SCEEEEEEESSCCGGGCEEE
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecC--CceEEEEEEccccHHHCCeE
Confidence            35678889999999999999999999998 489999998875532   1222222222  22345799999999999999


Q ss_pred             EEEEEcCCeeEE-EEeeEEEe
Q psy2775          88 TVVAKNREGEAK-MDIPVKVN  107 (785)
Q Consensus        88 ~C~a~~~~~~~~-~~~~v~v~  107 (785)
                      +|.|.|..|... ..+.|.|.
T Consensus        81 ~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          81 RCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEcCCCeEEEEEEEEEEE
Confidence            999999999765 46777775

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=112.04  Aligned_cols=83  Identities=20%  Similarity=0.307  Sum_probs=65.5

Q ss_pred             eeeeeecCeEE---EEEEEecCCCCceEEEeCCEEecCCCCeeEEeeC-------CeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         567 EKTVKEKGTIR---LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG-------ENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       567 ~~~v~~g~~v~---l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      ...+.+|....   |.|.+.|+|.|.|+|+|||++|..+.+.......       ..+.|.|.++.. +|+|.|+|.|+|
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~A~N   84 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccH-HHCcEEEEEEEe
Confidence            34455555554   5568999999999999999999877765544322       236799999999 999999999999


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      .+|.+.+++.|.|.
T Consensus        85 ~~G~~~~~i~v~v~   98 (107)
T d1he7a_          85 PFGQASASIMAAFM   98 (107)
T ss_dssp             TTEEEEEEEEECCC
T ss_pred             CCCEEEEEEEEEEE
Confidence            99998887777665

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.7e-13  Score=110.11  Aligned_cols=89  Identities=16%  Similarity=0.156  Sum_probs=70.7

Q ss_pred             CeEeeee-eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEe----e--------CCeEEEEEccCCCCC
Q psy2775         559 PLFIERF-EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF----D--------GENIILELKEADSET  625 (785)
Q Consensus       559 p~~~~~~-~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~----~--------~~~~~L~i~~~~~~~  625 (785)
                      |.|+.+. ....+.+|++++|.|.+.|+|.|.|.|+++|..+..........    .        ...++|+|.+++. +
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES-R   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG-G
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch-H
Confidence            5566544 34678899999999999999999999999999987655432221    0        0135899999999 9


Q ss_pred             Ccee-EEEEEEcCCcceEEEEEEE
Q psy2775         626 DAGD-YKVVATNELGSATHGARVT  648 (785)
Q Consensus       626 d~G~-Y~C~a~n~~g~~~~~~~l~  648 (785)
                      |.|. |+|.|.|.+|.+++++.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            9995 9999999999988877765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=3.5e-14  Score=115.24  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=66.4

Q ss_pred             eeeeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceE
Q psy2775         564 RFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~  642 (785)
                      ..+.+.+.+|+++.|.|.+ .|.|.|.|.|+|+|..+......+.......++|.|.++.. +|+|.|+|.|.|..|...
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~   88 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEA-SDLGNYSCFATSHIDFIT   88 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCG-GGCEEEEEEEEEEETTEE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeeccccc-ccCcEEEEEEEECCCCEE
Confidence            3456889999999999997 78999999999999877554444444444556799999999 999999999999999877


Q ss_pred             EE
Q psy2775         643 HG  644 (785)
Q Consensus       643 ~~  644 (785)
                      .+
T Consensus        89 ~~   90 (105)
T d1cs6a2          89 KS   90 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-13  Score=106.82  Aligned_cols=74  Identities=9%  Similarity=0.144  Sum_probs=63.6

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      +..|.+|++++|.|.+.|.|.|.|.|++++..+....              .+|+|.+++.+|+|.|+|.|.|..|....
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~--------------~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~   73 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------KTLSVSQLELQDSGTWTCTVLQNQKKVEF   73 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEES--------------SEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceeee--------------eeeeeeecccccccEEEEEEEeCCCEEEE
Confidence            5678999999999999999999999999775432211              24999999999999999999999999999


Q ss_pred             EeeEEEeC
Q psy2775         101 DIPVKVNT  108 (785)
Q Consensus       101 ~~~v~v~~  108 (785)
                      .+.|.|..
T Consensus        74 ~~~v~V~~   81 (84)
T d2nxyb2          74 KIDIVVLA   81 (84)
T ss_dssp             EEEECEEC
T ss_pred             EEEEEEEe
Confidence            99888873

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-14  Score=109.64  Aligned_cols=79  Identities=22%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             CCeeee--cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          12 PPTFSK--KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        12 ~p~~~~--~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      +|+|..  .|.++.+.+|+++.|.|.+.|.|.|.|.|++++..+...                 +.+.+++.+|+|.|+|
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-----------------~~~~~v~~~d~G~Y~C   64 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-----------------GESVTVTRDLEGTYLC   64 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-----------------TSCEECCGGGCEEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-----------------eeeeccccCCCCEEEE
Confidence            577743  478899999999999999999999999999998766433                 2245678999999999


Q ss_pred             EEEcCCeeEEEEeeEEEe
Q psy2775          90 VAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~  107 (785)
                      .|.|..|..+..+.|.|.
T Consensus        65 ~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          65 RARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEcCCCEEEEEEEEEEE
Confidence            999999999888888886

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.2e-13  Score=105.30  Aligned_cols=85  Identities=35%  Similarity=0.535  Sum_probs=75.0

Q ss_pred             ccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCC--CEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcc
Q psy2775         418 ISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSE--NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDK  495 (785)
Q Consensus       418 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~  495 (785)
                      |..++.+..+.+|+++.|.|.+.+|.+.+.|++++.++..+.  ++.+..++..+.|+|.++..+|+|.|+|.|.|   .
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~   79 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---G   79 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---E
T ss_pred             EEcCCCCEEEeCCCcEEEEEEECCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec---c
Confidence            456778999999999999999977888999999999987665  47778888889999999999999999999998   6


Q ss_pred             eeEEEEEEEc
Q psy2775         496 ESKATLTVEA  505 (785)
Q Consensus       496 ~~~~~l~V~~  505 (785)
                      ..++.|+|+.
T Consensus        80 ~~~a~l~V~~   89 (90)
T d1x44a1          80 QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEEEE
Confidence            7788898875

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-13  Score=117.03  Aligned_cols=94  Identities=27%  Similarity=0.439  Sum_probs=75.3

Q ss_pred             CCCCeee-----ecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC---------------------------
Q psy2775          10 GIPPTFS-----KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD---------------------------   57 (785)
Q Consensus        10 ~~~p~~~-----~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~---------------------------   57 (785)
                      ..||+|.     ..|..+.|.+|++++|.|.+.|.|.|.|.|++++..+....                           
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            4688874     35678999999999999999999999999999876543221                           


Q ss_pred             --CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          58 --EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        58 --~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                        ++.+....    ..++|+|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus        82 ~~r~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVETTK----DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSSCEEEEET----TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CceEEEEECC----CEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence              12222222    23679999999999999999999999999999888885

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2.6e-13  Score=108.24  Aligned_cols=82  Identities=21%  Similarity=0.328  Sum_probs=68.6

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE-
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH-  643 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~-  643 (785)
                      +.+..+.+|++++|.|.+.| |++.|.|+|+|..+..+.+..+.  ....+|.|.+++. +|+|.|+|.|.|..|...+ 
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~--~~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~S~   85 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS--QNNSILRIDPIKR-EDAGEYQCEISNPVSVRRSN   85 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEE--TTTTEEEECSCCG-GGCEEEEEEEESSSCCEECC
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceecc--CCceEEEEeccch-hhceEEEEEEEeCCCCeEEE
Confidence            46778999999999999876 56799999999999887766543  3445799999999 9999999999999998764 


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      .+.|.|.
T Consensus        86 ~~~L~V~   92 (96)
T d1l6za2          86 SIKLDII   92 (96)
T ss_dssp             CCEEEEC
T ss_pred             eEEEEEE
Confidence            4777775

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.40  E-value=3.7e-13  Score=104.71  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=61.2

Q ss_pred             eeeeeeecCeEEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceE-E
Q psy2775         566 EEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-H  643 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~-~  643 (785)
                      ....+.+|++++|.|.+.+. |.+.+.|||||+.+..        ......|.|.++.. +|+|.|+|.|.|..|... .
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~--------~~~~~~l~i~~v~~-~dsG~Y~C~a~n~~g~~~S~   78 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF--------SRSDPNFSIPQANH-SHSGDYHCTGNIGYTLYSSK   78 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------ESSCCEEEETTCCG-GGCEEEEEEEEETTEEEECC
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc--------cccccccccCccCH-HHCCeEEEEEEeCCCCEEee
Confidence            35568899999999999755 6669999999988742        23345699999999 999999999999999765 3


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      .+.|.|+
T Consensus        79 ~v~l~V~   85 (88)
T d2fcba2          79 PVTITVQ   85 (88)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEEe
Confidence            4667665

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.8e-13  Score=107.35  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=68.4

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      .++..+.+|++++|.|.+.| |.|.+.|+++|..+...........++  .|.|.++.. +|+|.|+|.|.|..|..+.+
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v~~-~DsG~Y~C~A~n~~g~~~~~   79 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSE-GDSGVYQCLSEERVKNKTVF   79 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCG-GGCEEEEEEEEEECSSSEEE
T ss_pred             hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee--EEEECCCCH-HHCcEEEEEEEEcCCCEEEE
Confidence            35788999999999999998 778999999999987665543433333  499999999 99999999999999988777


Q ss_pred             EEEEEEe
Q psy2775         645 ARVTVDV  651 (785)
Q Consensus       645 ~~l~V~~  651 (785)
                      ..|.+.+
T Consensus        80 ~~l~~~~   86 (92)
T d1olza1          80 QVVAKHV   86 (92)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7766653

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-13  Score=108.80  Aligned_cols=86  Identities=16%  Similarity=0.150  Sum_probs=68.4

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCC-CceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.|........+.+|++++|.|.+.|.|+ ++|+|+|+|..+....+. ....+  .+|.|.+++. +|+|.|+|.|.|
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~-~~~~~--~~L~I~~v~~-~D~G~Y~C~a~n   81 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR-WAGMG--RRLLLRSVQL-HDSGNYSCYRAG   81 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEE-EEEES--SEEEECSCCG-GGCEEEEEESSS
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeE-EecCC--CEEEECCCCh-hcCEEEEEEECC
Confidence            588888888999999999999999999876 489999999988665443 33333  3699999999 999999999988


Q ss_pred             CCcceEEEEEEEEE
Q psy2775         637 ELGSATHGARVTVD  650 (785)
Q Consensus       637 ~~g~~~~~~~l~V~  650 (785)
                      ..+.   +..|.|+
T Consensus        82 ~~~~---t~~l~V~   92 (93)
T d1n26a1          82 RPAG---TVHLLVD   92 (93)
T ss_dssp             SCSC---EEEEEEC
T ss_pred             cccc---EEEEEEE
Confidence            6543   3455553

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.6e-12  Score=103.77  Aligned_cols=90  Identities=17%  Similarity=0.263  Sum_probs=69.5

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCC-CeeEEEEC-CEEc-cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYN-GEPL-QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~-~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      +...|..+.+.+|+++.|.|.+.|.|+ +.|.|+++ +..+ ....++.+.....   ..++|+|.+++.+|+|.|+|.|
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a   79 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD---DSSTLTIYNANIDDAGIYKCVV   79 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEET---TEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecC---cceEEEcccCchhhceEEEEEE
Confidence            556788899999999999999999875 79999994 4444 3345555443322   1357999999999999999999


Q ss_pred             EcCCeeE-EEEeeEEEe
Q psy2775          92 KNREGEA-KMDIPVKVN  107 (785)
Q Consensus        92 ~~~~~~~-~~~~~v~v~  107 (785)
                      .|..|.. ...+.|.|+
T Consensus        80 ~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          80 TAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EETTTEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEEEE
Confidence            9999864 456777764

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.6e-13  Score=105.22  Aligned_cols=91  Identities=12%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEE--CCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY--NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      +|+|. .+.++.|.+|++++|.|.+.|.|.|.+.|++  ++.......+......   ....++|.|.+++.+|+|.|+|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C   77 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---RRFIASFNVVNTTKRDAGKYRC   77 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEET---TEEEEEEEECSCCGGGCSEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEe---ecCceEEEECCCCHHHCeEEEE
Confidence            79997 5999999999999999999999988765543  3322222222221111   1233579999999999999999


Q ss_pred             EEEcCCeeEEEE-eeEEE
Q psy2775          90 VAKNREGEAKMD-IPVKV  106 (785)
Q Consensus        90 ~a~~~~~~~~~~-~~v~v  106 (785)
                      .|.|..|..... +.|.|
T Consensus        78 ~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          78 MIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEEEE
Confidence            999999986544 56766

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=9.4e-13  Score=104.93  Aligned_cols=87  Identities=23%  Similarity=0.370  Sum_probs=72.2

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      +|.|.  +.+..+.+|++++|.|.+.+ +++.|.|++++..+....+..+....      ++|+|.+++.+|+|.|+|.|
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~------~~L~I~~v~~~d~G~Y~C~a   75 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNN------SILRIDPIKREDAGEYQCEI   75 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTT------TEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCc------eEEEEeccchhhceEEEEEE
Confidence            45554  56788999999999999866 56799999999999988888765543      35999999999999999999


Q ss_pred             EcCCeeEEE-EeeEEEe
Q psy2775          92 KNREGEAKM-DIPVKVN  107 (785)
Q Consensus        92 ~~~~~~~~~-~~~v~v~  107 (785)
                      .|..|...+ .+.|.|.
T Consensus        76 ~N~~g~~~S~~~~L~V~   92 (96)
T d1l6za2          76 SNPVSVRRSNSIKLDII   92 (96)
T ss_dssp             ESSSCCEECCCCEEEEC
T ss_pred             EeCCCCeEEEeEEEEEE
Confidence            999887653 5778886

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.38  E-value=5.3e-13  Score=104.00  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             eeeeeeeeecCeEEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceE
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~  642 (785)
                      .+....+.+|++++|.|.+.+. |.+.+.|||||..+...        .....|.|.+++. +|+|.|+|.|.|..|...
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~--------~~~~~l~I~~v~~-~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATL-KDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------EECCCEEESSCCG-GGCEEEEEEEEETTEEEE
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee--------ccccccEECccce-eccceEEEEEEeCCCCeE
Confidence            3445678999999999999855 55689999999887421        2234689999999 999999999999998755


Q ss_pred             -EEEEEEEE
Q psy2775         643 -HGARVTVD  650 (785)
Q Consensus       643 -~~~~l~V~  650 (785)
                       ..+.|.|+
T Consensus        79 S~~v~itV~   87 (89)
T d1fnla2          79 SETVNITIT   87 (89)
T ss_dssp             CCCEEEEEE
T ss_pred             EeeEEEEEE
Confidence             34666665

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.38  E-value=6.6e-14  Score=109.46  Aligned_cols=86  Identities=35%  Similarity=0.496  Sum_probs=77.7

Q ss_pred             cccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcce
Q psy2775         417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKE  496 (785)
Q Consensus       417 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~  496 (785)
                      .+..++.+..+.+|+++.|.|.+..|.+.+.|+|||.++..++++.+..++..+.|.|.++..+|+|.|+|.|.|   ..
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n---~~   79 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN---AK   79 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCSSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSS---CB
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEECCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECc---eE
Confidence            456678899999999999999987788899999999999999999999999999999999999999999999988   56


Q ss_pred             eEEEEEEEc
Q psy2775         497 SKATLTVEA  505 (785)
Q Consensus       497 ~~~~l~V~~  505 (785)
                      .++.|+|.+
T Consensus        80 ~sa~l~V~e   88 (89)
T d1tiua_          80 SAANLKVKE   88 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            678888864

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-12  Score=106.27  Aligned_cols=89  Identities=21%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             CCceEecCCCeEEEEE---EEEecCCCeeEEEECCEEccCCCCEEEeecC---CccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775          19 TKPVYAEENSEVTLEV---RLVAVPEPDLLWYYNGEPLQETDEVVFSDQS---DMHSYVSIVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C---~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |..+.+.+|..+.+.|   .+.|.|.|.+.|++++..|..+.+.......   ......+.|.|.+++.+|+|.|+|.|.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            5566777777766555   8899999999999999999877766544322   233356789999999999999999999


Q ss_pred             cCCeeEEEEeeEEEe
Q psy2775          93 NREGEAKMDIPVKVN  107 (785)
Q Consensus        93 ~~~~~~~~~~~v~v~  107 (785)
                      |..|.+...+.|.|.
T Consensus        84 N~~G~~~~~i~v~v~   98 (107)
T d1he7a_          84 NPFGQASASIMAAFM   98 (107)
T ss_dssp             ETTEEEEEEEEECCC
T ss_pred             eCCCEEEEEEEEEEE
Confidence            999999998888886

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.7e-13  Score=111.04  Aligned_cols=90  Identities=16%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC----C------CeeEEeeCCeEEEEEccCCCCCCce
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS----P------KKREIFDGENIILELKEADSETDAG  628 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~----~------~~~~~~~~~~~~L~i~~~~~~~d~G  628 (785)
                      |.+........+.+|++++|.|.+.|.|.|.|.|+|++......    .      ..+...  ..++|+|.++.. +|+|
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tL~I~~v~~-~D~G   78 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SSSGITFSSVTR-KDNG   78 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ETTEEEESCCCG-GGCE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe--cCCEEEEeECCc-cCCE
Confidence            55566667889999999999999999999999999855432110    0      000111  224699999999 9999


Q ss_pred             eEEEEEEcCCcceEEEEEEEEEe
Q psy2775         629 DYKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       629 ~Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      .|+|.|.|..|....++.|.|.|
T Consensus        79 ~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          79 EYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEEEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEEEEECCCCEEEEEEEEEEE
Confidence            99999999999999888888864

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=104.81  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=61.8

Q ss_pred             eeeeeecCeEEEEE------EEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         567 EKTVKEKGTIRLMA------KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       567 ~~~v~~g~~v~l~C------~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      .+.+..|....|.|      .+.|+|.|.|.|+|||+++..+..... ..++  .|.|.++.. +|+|.|+|.|.|..|.
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~-~~~~--~L~I~~v~~-~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS-GVKD--RLIVMNVAE-KHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEE-EETT--EEEESSCCG-GGCEEEEEEEEEEETT
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEE-ecCC--EEEEccccc-ccCcEEEEEEEECcCC
Confidence            57899999999999      678999999999999999977655433 3333  599999999 9999999999998876


Q ss_pred             eEEE
Q psy2775         641 ATHG  644 (785)
Q Consensus       641 ~~~~  644 (785)
                      ...+
T Consensus        84 ~~~~   87 (103)
T d1iray2          84 KQYP   87 (103)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=102.24  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             eeeeeeeecCeEEEEEEEecCC-CCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceE-
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-  642 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~-  642 (785)
                      .....|.+|++++|.|.+.+.| .+.+.|||||+.+....        ....|.|.+++. +|+|.|.|.|.|..|... 
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~-~dsG~Y~C~a~n~~~~~~S   77 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATV-EDSGTYYCTGKVWQLDYES   77 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCG-GGCEEEEEEEEETTEEEEC
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeee-ecCcEEEEEEEeCCCCeEe
Confidence            3456789999999999997764 45899999999885432        234699999999 999999999999988653 


Q ss_pred             EEEEEEEE
Q psy2775         643 HGARVTVD  650 (785)
Q Consensus       643 ~~~~l~V~  650 (785)
                      ..+.|.|+
T Consensus        78 ~~v~i~V~   85 (89)
T d1f2qa2          78 EPLNITVI   85 (89)
T ss_dssp             CCEEEEEE
T ss_pred             eeEEEEEE
Confidence            33556665

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1e-13  Score=113.24  Aligned_cols=89  Identities=17%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCe----------eEEeeCCeEEEEEccCCCCCCcee
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK----------REIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~----------~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+.....+..+.+|++++|.|.+.|.|.|.+.|+|++..+......          +....  ..+|.|.++.. +|+|.
T Consensus         6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~-~D~G~   82 (105)
T d1nbqa1           6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--PTGITFKSVTR-EDTGT   82 (105)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--TTEEECSCCCT-TSCSE
T ss_pred             EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec--CceEEEecccc-cceee
Confidence            3444445778999999999999999999999999976544321110          00111  23699999999 99999


Q ss_pred             EEEEEEcCCcceEEEEEEEEEe
Q psy2775         630 YKVVATNELGSATHGARVTVDV  651 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~~~l~V~~  651 (785)
                      |+|.|.|..|.....+.|.|.|
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v~V  104 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKLIV  104 (105)
T ss_dssp             EEEEEEETTSSCEECCEEECCE
T ss_pred             EEEEEEECCCCEEEEEEEEEEE
Confidence            9999999999999888887753

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.4e-13  Score=106.67  Aligned_cols=82  Identities=12%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             ccCCCCeeeecCCceEecCCCeEEEEEEEEecCC-CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775           8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus         8 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .-..+|.|...+..+.+.+|++++|.|.+.|.|+ +.|.|+|++..+....+.... .+      .+|.|.+++.+|+|.
T Consensus         2 ~P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~-~~------~~L~I~~v~~~D~G~   74 (93)
T d1n26a1           2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-MG------RRLLLRSVQLHDSGN   74 (93)
T ss_dssp             CSSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE-ES------SEEEECSCCGGGCEE
T ss_pred             CCCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec-CC------CEEEECCCChhcCEE
Confidence            3457899999999999999999999999988765 689999999888766554332 22      249999999999999


Q ss_pred             EEEEEEcCCe
Q psy2775          87 YTVVAKNREG   96 (785)
Q Consensus        87 Y~C~a~~~~~   96 (785)
                      |+|.|.|..+
T Consensus        75 Y~C~a~n~~~   84 (93)
T d1n26a1          75 YSCYRAGRPA   84 (93)
T ss_dssp             EEEESSSSCS
T ss_pred             EEEEECCccc
Confidence            9999987653

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.3e-12  Score=101.83  Aligned_cols=87  Identities=32%  Similarity=0.524  Sum_probs=73.1

Q ss_pred             CCcccccCCC-eEEecCCcEEEEEEEeCCCceEEEEECCEEcccC-CCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec
Q psy2775         415 PPEISVPLQD-VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFS-ENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT  492 (785)
Q Consensus       415 ~~~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  492 (785)
                      +|.+...+.+ ..+.+|+.+.|.|.+.++.+.+.|+++|..+..+ ..+.+..++..+.|+|.++..+|+|.|+|.|.| 
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n-   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG-   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECSSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT-
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEECCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee-
Confidence            4555555544 5689999999999997788899999999998765 467778888889999999999999999999988 


Q ss_pred             CcceeEEEEEEE
Q psy2775         493 GDKESKATLTVE  504 (785)
Q Consensus       493 g~~~~~~~l~V~  504 (785)
                        ...++.|.|+
T Consensus        84 --~~~s~~l~V~   93 (94)
T d1pd6a_          84 --EKCSTELFVK   93 (94)
T ss_dssp             --EEECCEEEEE
T ss_pred             --EEEEEEEEEE
Confidence              6677788876

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=8.5e-13  Score=108.55  Aligned_cols=96  Identities=15%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCc----cceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDM----HSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~D~G~   86 (785)
                      ||.|........+.+|++++|.|.+ .|.|.+.|.|++++..+..............    ....+.|+|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            5555444445578999999999998 4889999999999998765543322211110    0112459999999999999


Q ss_pred             EEEEEEcCCeeEEEE--eeEEEe
Q psy2775          87 YTVVAKNREGEAKMD--IPVKVN  107 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~--~~v~v~  107 (785)
                      |+|.|.|..|....+  +.|.|.
T Consensus        82 Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          82 YYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             EEEEEECSSSCCEECCCEEEEEE
T ss_pred             EEEEEEECCCcEEEEEEEEEEEE
Confidence            999999999876554  455554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.1e-14  Score=113.55  Aligned_cols=95  Identities=15%  Similarity=0.263  Sum_probs=72.3

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCc---cceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDM---HSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ||.+........+.+|++++|.|.+ .|.|.+.+.|++++..+....+.........   ....+.|+|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            7777777777889999999999998 5889999999999988766544332222111   11235699999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEE
Q psy2775          88 TVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v  106 (785)
                      +|.|.|..|....+..|+|
T Consensus        82 ~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEECSSSCCEECCCBCC
T ss_pred             EEEEEECCCceEEEEEEEE
Confidence            9999999998766544433

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-13  Score=112.82  Aligned_cols=101  Identities=19%  Similarity=0.262  Sum_probs=78.8

Q ss_pred             cccCCCCeeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCC
Q psy2775           7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus         7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      |.+..||.|. .+..+.+.+|+++.|.|.+.|. |.+.+.|++++..+...  .++.+..........++|.|.+++.+|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            4556788876 4677889999999999999885 55689999999887654  334443333333344679999999999


Q ss_pred             -CeEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          84 -EGVYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        84 -~G~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                       +|.|+|.|.|..|.+...+.|.|..
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEEC
Confidence             7999999999999999998888864

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-13  Score=114.89  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCC-CCceEEEeCCEEecCCCC--eeEEe----eCCeEEEEEccCCCCCC-cee
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPK--KREIF----DGENIILELKEADSETD-AGD  629 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~i~~~~~--~~~~~----~~~~~~L~i~~~~~~~d-~G~  629 (785)
                      ||.| ..++.+.+.+|+.+.|.|.+.|.| .+.+.|++++..+..+..  +.+..    ++..++|.|.++.. +| +|.
T Consensus         7 Pp~i-~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~~G~   84 (115)
T d2crya1           7 PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR-ADFQTI   84 (115)
T ss_dssp             SCCE-EEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH-HHHHSC
T ss_pred             CCEE-ecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch-hcCCeE
Confidence            4655 456778899999999999999975 457999999998865432  22221    12235799999999 88 799


Q ss_pred             EEEEEEcCCcceEEEEEEEEEeec
Q psy2775         630 YKVVATNELGSATHGARVTVDVEK  653 (785)
Q Consensus       630 Y~C~a~n~~g~~~~~~~l~V~~~~  653 (785)
                      |+|.|+|..|+++.++.|.|+...
T Consensus        85 Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             EEEEEECSSCEEEEEECCCCSCSS
T ss_pred             EEEEEEECCCeEEEEEEEEEECCC
Confidence            999999999999998888886443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.3e-12  Score=103.00  Aligned_cols=93  Identities=20%  Similarity=0.313  Sum_probs=72.5

Q ss_pred             CeeeecC-CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEee------cC--CccceEEEEEEcccCCCC
Q psy2775          13 PTFSKKT-KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSD------QS--DMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        13 p~~~~~~-~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~------~~--~~~~~~~~L~i~~~~~~D   83 (785)
                      |.|..++ ..+.+..|++++|.|.+.|.|.+.|.|++++..+..........      ..  ......++|+|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            6776655 45788999999999999999999999999999886554322111      11  112245789999999999


Q ss_pred             Ce-EEEEEEEcCCeeEEEEeeEE
Q psy2775          84 EG-VYTVVAKNREGEAKMDIPVK  105 (785)
Q Consensus        84 ~G-~Y~C~a~~~~~~~~~~~~v~  105 (785)
                      .| .|+|.|.|..|.+...+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999988877664

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.8e-12  Score=104.06  Aligned_cols=89  Identities=10%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEec-CCCC--ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKA-SPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p--~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      |+.+...+.+..+.+|++++|+|.+.| +|.|  +++|+|++..+.....   ......++|+|..+.. +|+|.|+|+|
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~-dd~g~ytC~A   79 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRD-HHGAQFSCRT   79 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSS-CSSCEEEEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehh-HCCCEEEEEE
Confidence            466666677778999999999999987 4666  5889999998854321   1233456899998888 9999999999


Q ss_pred             EcCCcceEEEEEEEEE
Q psy2775         635 TNELGSATHGARVTVD  650 (785)
Q Consensus       635 ~n~~g~~~~~~~l~V~  650 (785)
                      +|..|+...+..+.|.
T Consensus        80 ~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          80 ELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEECGGGTSCEEEEEC
T ss_pred             EeCCCCccCeEeeeEc
Confidence            9999988776666664

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3e-13  Score=110.42  Aligned_cols=97  Identities=18%  Similarity=0.254  Sum_probs=71.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCE--EEeec--CCccceEEEEEEcccCCCCCeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV--VFSDQ--SDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~--~~~~~--~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +++.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+......  .....  +......++|+|.+++.+|+|.
T Consensus         3 g~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (105)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             CceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceee
Confidence            4567777888899999999999999999999999999976543221111  11111  1111112469999999999999


Q ss_pred             EEEEEEcCCeeEEEEeeEEEe
Q psy2775          87 YTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        87 Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      |+|.|.|..|.....+.|+|.
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEEEETTSSCEECCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999988777666653

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=7.1e-13  Score=107.25  Aligned_cols=95  Identities=14%  Similarity=0.280  Sum_probs=67.8

Q ss_pred             CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC----CCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE----TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      |.+...+..+.+.+|++++|.|.+.|.|.+.|.|++++.....    ................++|+|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            6677788889999999999999999999999999986542211    010000001111112246999999999999999


Q ss_pred             EEEEcCCeeEEEEeeEEEe
Q psy2775          89 VVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        89 C~a~~~~~~~~~~~~v~v~  107 (785)
                      |.|.|..|.....+.|+|.
T Consensus        82 C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999876666555543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.29  E-value=3.1e-12  Score=98.82  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=63.9

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      |.+...+....+.+|++++|.|.+.|+|.+ .+.|++||..+....          ..|.|.+++. +|+|.|+|.|.|.
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~-~dsG~Y~C~a~ns   73 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKANN-NDSGEYTCQTGQT   73 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEECCG-GGCEEEEEECTTS
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeeccc-cCCcEEEEECCCC
Confidence            667777777899999999999999999887 699999999886543          2488999999 9999999999998


Q ss_pred             CcceEEEEEEEE
Q psy2775         638 LGSATHGARVTV  649 (785)
Q Consensus       638 ~g~~~~~~~l~V  649 (785)
                      .++..  +.|.|
T Consensus        74 ~~S~~--v~l~V   83 (85)
T d2fcba1          74 SLSDP--VHLTV   83 (85)
T ss_dssp             BCCCC--EEEEE
T ss_pred             ccccc--EEEEE
Confidence            66543  44444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.27  E-value=4.3e-12  Score=97.65  Aligned_cols=73  Identities=22%  Similarity=0.263  Sum_probs=61.6

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      +|.+...+....+.+|++++|.|.+.|.|.+ .+.|++++..+..+          ..+|.|.++.. +|+|.|+|.|.|
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~-~d~G~Y~C~a~~   73 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATV-NDSGEYRCQTNL   73 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCG-GGCEEEEEECSS
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcc-cCCEEEEEEccC
Confidence            4778888888899999999999999999988 57788998877543          23599999999 999999999998


Q ss_pred             CCcce
Q psy2775         637 ELGSA  641 (785)
Q Consensus       637 ~~g~~  641 (785)
                      ..++.
T Consensus        74 s~~S~   78 (84)
T d1fnla1          74 STLSD   78 (84)
T ss_dssp             SCCCC
T ss_pred             CCccc
Confidence            76644

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.26  E-value=4.1e-12  Score=98.85  Aligned_cols=81  Identities=10%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             eeecCCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +...+....|.+|++++|.|.+.+ .|.+.+.||+||..+...      ...      ..|.|.+++.+|+|.|+|.|.|
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~~~------~~l~I~~v~~~dsG~Y~C~a~n   72 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHN------SDFHIPKATLKDSGSYFCRGLV   72 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------EEC------CCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------ccc------cccEECccceeccceEEEEEEe
Confidence            344455677899999999999864 466689999999876421      111      2389999999999999999999


Q ss_pred             CCeeEE-EEeeEEEe
Q psy2775          94 REGEAK-MDIPVKVN  107 (785)
Q Consensus        94 ~~~~~~-~~~~v~v~  107 (785)
                      ..+... ..+.|.|.
T Consensus        73 ~~~~~~S~~v~itV~   87 (89)
T d1fnla2          73 GSKNVSSETVNITIT   87 (89)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCCCeEEeeEEEEEE
Confidence            887654 35666665

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-12  Score=104.24  Aligned_cols=81  Identities=14%  Similarity=0.067  Sum_probs=65.9

Q ss_pred             eeeeeecCeEEEEEEEe-cCCCCceEEEeCCEEecCC--CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         567 EKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      .....+|+.+.|.|.+. +.|.+.|.|+|+|..+...  .+.++...+  .+|.|.+++. +|+|.|+|.|.|..|....
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~~   87 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKV-EDSGHYYCVVRNSSYCLRI   87 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCG-GGCEEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEecccee-cCCEEEEEEEECCCCeEEE
Confidence            45678899999999885 6799999999998765432  223333333  3699999999 9999999999999999999


Q ss_pred             EEEEEEE
Q psy2775         644 GARVTVD  650 (785)
Q Consensus       644 ~~~l~V~  650 (785)
                      ++.|.|.
T Consensus        88 ~~~L~V~   94 (101)
T d1iray1          88 KISAKFV   94 (101)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999886

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.26  E-value=6.8e-12  Score=97.42  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             cCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      .+....|.+|++++|.|.+.+. |.+.+.|||++..+....      .+      ..|+|.+++.+|+|.|+|.|.|..+
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~------~~------~~l~i~~v~~~dsG~Y~C~a~n~~g   73 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR------SD------PNFSIPQANHSHSGDYHCTGNIGYT   73 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES------SC------CEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc------cc------cccccCccCHHHCCeEEEEEEeCCC
Confidence            3445668999999999999654 667899999998764221      11      3499999999999999999999988


Q ss_pred             eEE-EEeeEEEe
Q psy2775          97 EAK-MDIPVKVN  107 (785)
Q Consensus        97 ~~~-~~~~v~v~  107 (785)
                      ... ..+.|.|.
T Consensus        74 ~~~S~~v~l~V~   85 (88)
T d2fcba2          74 LYSSKPVTITVQ   85 (88)
T ss_dssp             EEECCCEEEEEC
T ss_pred             CEEeeeEEEEEe
Confidence            654 44667764

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.25  E-value=5.6e-12  Score=96.99  Aligned_cols=74  Identities=16%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .+|.+...|....|.+|++++|+|.+.|.|.+. +.|++++..+....              .+|.|.+++.+|+|.|+|
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~~~~~~d~G~Y~C   69 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYRC   69 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC--------------SEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc--------------eeeEecCCcccCCEEEEE
Confidence            457788889999999999999999999888775 56778887654332              249999999999999999


Q ss_pred             EEEcCCeeE
Q psy2775          90 VAKNREGEA   98 (785)
Q Consensus        90 ~a~~~~~~~   98 (785)
                      .|.+...+.
T Consensus        70 ~a~~s~~S~   78 (84)
T d1fnla1          70 QTNLSTLSD   78 (84)
T ss_dssp             ECSSSCCCC
T ss_pred             EccCCCccc
Confidence            998765543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=96.42  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=61.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      ..+....|.+|++++|.|.+.+. +...+.|||+|..+......            +.|.|.+++.+|+|.|+|+|.|..
T Consensus         5 lq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~------------~~l~i~~~~~~dsG~Y~C~a~n~~   72 (89)
T d1f2qa2           5 LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN------------HNISITNATVEDSGTYYCTGKVWQ   72 (89)
T ss_dssp             EEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCS------------SEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccccc------------ceEEEeeeeeecCcEEEEEEEeCC
Confidence            34556678899999999999665 55689999999887543211            249999999999999999999988


Q ss_pred             eeEE-EEeeEEEe
Q psy2775          96 GEAK-MDIPVKVN  107 (785)
Q Consensus        96 ~~~~-~~~~v~v~  107 (785)
                      +... ..+.|.|.
T Consensus        73 ~~~~S~~v~i~V~   85 (89)
T d1f2qa2          73 LDYESEPLNITVI   85 (89)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CCeEeeeEEEEEE
Confidence            7543 45667776

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.24  E-value=2e-12  Score=104.65  Aligned_cols=82  Identities=18%  Similarity=0.193  Sum_probs=63.0

Q ss_pred             eeee-cCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          14 TFSK-KTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        14 ~~~~-~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      .|.. .++.+.|.+|+++.|.|.+ .|.|.+.|.|++++..+...  .++......      ++|.|.+++.+|+|.|+|
T Consensus         5 ~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~C   78 (105)
T d1cs6a2           5 EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT------GNLYIAKTEASDLGNYSC   78 (105)
T ss_dssp             CCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTT------CCEEESSCCGGGCEEEEE
T ss_pred             cccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCC------CEEeecccccccCcEEEE
Confidence            3544 4567999999999999997 68899999999998765432  333333222      249999999999999999


Q ss_pred             EEEcCCeeEEEE
Q psy2775          90 VAKNREGEAKMD  101 (785)
Q Consensus        90 ~a~~~~~~~~~~  101 (785)
                      .|.|..+.....
T Consensus        79 ~a~N~~g~~~~~   90 (105)
T d1cs6a2          79 FATSHIDFITKS   90 (105)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEECCCCEEEE
Confidence            999987765543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=98.04  Aligned_cols=79  Identities=22%  Similarity=0.226  Sum_probs=61.1

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .|.|+..|....|.+|++++|+|.+.+.|.+ .+.|++++..+....              ..|.|.+++.+|+|.|+|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~~v~~~d~G~Y~C~   66 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAKFEDSGEYKCQ   66 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS--------------SEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc--------------ceeEECCCChhhCCcEEEE
Confidence            3889999999999999999999999888876 467788887765432              2399999999999999999


Q ss_pred             EEcCCeeEEEEeeEEE
Q psy2775          91 AKNREGEAKMDIPVKV  106 (785)
Q Consensus        91 a~~~~~~~~~~~~v~v  106 (785)
                      |.|..+++.  +.|.|
T Consensus        67 a~~s~~S~~--v~l~V   80 (82)
T d1f2qa1          67 HQQVNESEP--VYLEV   80 (82)
T ss_dssp             CTTSSCCCC--EEEEE
T ss_pred             ecCCCCccc--EEEEE
Confidence            988765443  34444

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.23  E-value=7.2e-12  Score=96.68  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=60.9

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .|.|+..|....|.+|++++|.|.+.+.|.+ .+.|++++..+.....              .|.|.+++.+|+|.|+|.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~--------------~l~i~~v~~~dsG~Y~C~   69 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTCQ   69 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc--------------ceEEeeccccCCcEEEEE
Confidence            3567788889999999999999999888765 6899999988755422              288999999999999999


Q ss_pred             EEcCCeeEE
Q psy2775          91 AKNREGEAK   99 (785)
Q Consensus        91 a~~~~~~~~   99 (785)
                      |.|..+++.
T Consensus        70 a~ns~~S~~   78 (85)
T d2fcba1          70 TGQTSLSDP   78 (85)
T ss_dssp             CTTSBCCCC
T ss_pred             CCCCccccc
Confidence            988765443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.4e-11  Score=98.64  Aligned_cols=90  Identities=8%  Similarity=0.121  Sum_probs=71.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEe-cCCC--eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEP--DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .||++...+.+..+.+|++++|.|.+.| .|.+  .+.|++++..+....       .......++|+|..++.+|+|.|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~-------~~~~~~~s~l~i~~~~~dd~g~y   75 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-------AVGEPAEVTTTVLVRRDHHGAQF   75 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-------CCTTTEEEEEEEECCSSCSSCEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc-------cccccceEEEEEeeehhHCCCEE
Confidence            5889999999999999999999999986 4544  688999998874321       11223457799999999999999


Q ss_pred             EEEEEcCCeeEEEEeeEEEe
Q psy2775          88 TVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +|+|.|..|.....+.+.+.
T Consensus        76 tC~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          76 SCRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEEEEECGGGTSCEEEEEC
T ss_pred             EEEEEeCCCCccCeEeeeEc
Confidence            99999988876666666664

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4e-12  Score=97.32  Aligned_cols=78  Identities=19%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      |.|...+....+.+|++++|.|.+.|.|.+ .+.|++++..+...          ...|.|.+++. +|+|.|+|.|.|.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~v~~-~d~G~Y~C~a~~s   70 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKF-EDSGEYKCQHQQV   70 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCG-GGCEEEEEECTTS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------cceeEECCCCh-hhCCcEEEEecCC
Confidence            667777777889999999999999999988 57789999887543          23599999999 9999999999987


Q ss_pred             CcceEEEEEEEE
Q psy2775         638 LGSATHGARVTV  649 (785)
Q Consensus       638 ~g~~~~~~~l~V  649 (785)
                      .++.  .+.|.|
T Consensus        71 ~~S~--~v~l~V   80 (82)
T d1f2qa1          71 NESE--PVYLEV   80 (82)
T ss_dssp             SCCC--CEEEEE
T ss_pred             CCcc--cEEEEE
Confidence            6654  345555

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.1e-12  Score=100.20  Aligned_cols=79  Identities=11%  Similarity=0.175  Sum_probs=61.1

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA   98 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~   98 (785)
                      .+...+++|+++.|.|.+.| |.+.+.|+++|..+...........++      .|.|.+++.+|+|.|+|.|.|..+..
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~------~L~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK------NLLIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT------CEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee------EEEECCCCHHHCcEEEEEEEEcCCCE
Confidence            35689999999999999987 678999999998886654332222221      39999999999999999999987765


Q ss_pred             EEEeeE
Q psy2775          99 KMDIPV  104 (785)
Q Consensus        99 ~~~~~v  104 (785)
                      .....|
T Consensus        77 ~~~~~l   82 (92)
T d1olza1          77 TVFQVV   82 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            544333

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.6e-12  Score=101.91  Aligned_cols=87  Identities=13%  Similarity=0.122  Sum_probs=62.4

Q ss_pred             eeeeeeeeeeecCeEEEEEEEec-CCC--CceEEEeCCEEecCCCCeeEEee--CCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKA-SPA--PSIVWFRNNKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g-~P~--p~v~W~~~~~~i~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      ...+.+..+.+|+.++|+|.+.| +|.  ++|+|||+++++..+........  ...++|+|..... +|.|.|+|+|+|
T Consensus         6 ~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~ytC~A~n   84 (106)
T d1zxqa1           6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRE-DGHRNFSCLAVL   84 (106)
T ss_dssp             EEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGG-GGGCEEEEEEEE
T ss_pred             EecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehh-cCCcEEEEEEEe
Confidence            34566778999999999999987 454  47999999999864432222112  2345677777666 888899999999


Q ss_pred             CCcceEEEEEEEE
Q psy2775         637 ELGSATHGARVTV  649 (785)
Q Consensus       637 ~~g~~~~~~~l~V  649 (785)
                      +.|....+..+.+
T Consensus        85 ~~~~~~~~~~~~~   97 (106)
T d1zxqa1          85 DLMSRGGNIFHKH   97 (106)
T ss_dssp             ECGGGTCCEEEEE
T ss_pred             cCCCCCCeeEecc
Confidence            9987655554444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.14  E-value=4.3e-12  Score=103.30  Aligned_cols=82  Identities=22%  Similarity=0.172  Sum_probs=61.4

Q ss_pred             eeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCe----eEEeeCCeEEEEEccCCCCCCce---eEEEEEEcCC
Q psy2775         567 EKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKK----REIFDGENIILELKEADSETDAG---DYKVVATNEL  638 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~----~~~~~~~~~~L~i~~~~~~~d~G---~Y~C~a~n~~  638 (785)
                      +.++.+|++++|.|.+ .|+|.|.+.|+|++..+......    ..+......+|.|.+++. +|+|   .|+|.|.|..
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK-EDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECG-GGCCSSEEEEEEEECTT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEe-eccCCceEEEEEEEeCC
Confidence            5568899999999997 89999999999988766433211    111223345699999988 7777   6999999999


Q ss_pred             cceEEEEEEEE
Q psy2775         639 GSATHGARVTV  649 (785)
Q Consensus       639 g~~~~~~~l~V  649 (785)
                      |.......+.+
T Consensus        90 g~~~~~~~~~~  100 (111)
T d1biha2          90 VDEEVVLVEYE  100 (111)
T ss_dssp             CSSCEEEEEEE
T ss_pred             CCceEEEEEEE
Confidence            98876554443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.9e-11  Score=94.57  Aligned_cols=86  Identities=13%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             ecCCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          17 KKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      ..|..+.+.+|+.+.|.|.+. +.|.+.|.|++++..+...  ....+...+      .+|.|.+++.+|+|.|+|.|.|
T Consensus         7 ~~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N   80 (101)
T d1iray1           7 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK------EKLWFVPAKVEDSGHYYCVVRN   80 (101)
T ss_dssp             ECCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET------TEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC------CEEEeccceecCCEEEEEEEEC
Confidence            356778899999999999884 6788999999998655322  222222222      3599999999999999999999


Q ss_pred             CCeeEEEEeeEEEeC
Q psy2775          94 REGEAKMDIPVKVNT  108 (785)
Q Consensus        94 ~~~~~~~~~~v~v~~  108 (785)
                      ..|.....+.|.|..
T Consensus        81 ~~g~~~~~~~L~V~~   95 (101)
T d1iray1          81 SSYCLRIKISAKFVE   95 (101)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999999999999975

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.5e-11  Score=94.67  Aligned_cols=71  Identities=15%  Similarity=0.153  Sum_probs=58.1

Q ss_pred             ceEecCCCeEEEEE------EEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775          21 PVYAEENSEVTLEV------RLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        21 ~~~v~~G~~v~l~C------~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      .+.+..|.+..|.|      .+.+.|.|.|.|++|+.+|...........+       .|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~-------~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD-------RLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT-------EEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC-------EEEEcccccccCcEEEEEEEEC
Confidence            47889999999999      5678899999999999999766544333322       3999999999999999999987


Q ss_pred             CeeE
Q psy2775          95 EGEA   98 (785)
Q Consensus        95 ~~~~   98 (785)
                      .+..
T Consensus        81 ~~g~   84 (103)
T d1iray2          81 YLGK   84 (103)
T ss_dssp             ETTE
T ss_pred             cCCE
Confidence            6543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3e-11  Score=97.48  Aligned_cols=93  Identities=13%  Similarity=0.069  Sum_probs=65.4

Q ss_pred             CCee-eecCCceEecCCCeEEEEEEEEe-c--CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTF-SKKTKPVYAEENSEVTLEVRLVA-V--PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~-~~~~~~~~v~~G~~v~l~C~~~g-~--p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ||.+ ...+.+..+.+|+.++|.|.+.| .  |.+.|+|++++..+........  ........++|+|.....+|.|.|
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~--~~~~~~~~s~l~~~~~~~d~g~~y   78 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA--APAPQEATATFNSTADREDGHRNF   78 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS--TTCTTCEEEEEEEECCGGGGGCEE
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE--eecccceeEEEEEeeehhcCCcEE
Confidence            4444 34677788999999999999976 3  4458999999998854332211  222233456788888888899999


Q ss_pred             EEEEEcCCeeEEEEeeEEE
Q psy2775          88 TVVAKNREGEAKMDIPVKV  106 (785)
Q Consensus        88 ~C~a~~~~~~~~~~~~v~v  106 (785)
                      +|+|.|..+.....+.+.+
T Consensus        79 tC~A~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          79 SCLAVLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEEEEEECGGGTCCEEEEE
T ss_pred             EEEEEecCCCCCCeeEecc
Confidence            9999998764433444444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.99  E-value=2.8e-11  Score=98.34  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=59.4

Q ss_pred             ceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCCC-------CEEEeecCCccceEEEEEEcccCCCCCe---EEEE
Q psy2775          21 PVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETD-------EVVFSDQSDMHSYVSIVTIKSIKKREEG---VYTV   89 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~~~~~D~G---~Y~C   89 (785)
                      ..++.||++++|.|.+ .|.|.|.+.|++++..+....       ++....+       .+|+|.+++.+|+|   .|.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-------~~L~i~~v~~~D~gd~g~Y~C   83 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD-------GNLYFTIVTKEDVSDIYKYVC   83 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT-------SCEEEEEECGGGCCSSEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccc-------cccEEeeeEeeccCCceEEEE
Confidence            4567899999999997 899999999999876653322       1211111       24999999998877   7999


Q ss_pred             EEEcCCeeEEEEeeEEEe
Q psy2775          90 VAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        90 ~a~~~~~~~~~~~~v~v~  107 (785)
                      .|.|..|.+...+.+.+.
T Consensus        84 ~A~N~~g~~~~~~~~~~i  101 (111)
T d1biha2          84 TAKNAAVDEEVVLVEYEI  101 (111)
T ss_dssp             EEECTTCSSCEEEEEEEE
T ss_pred             EEEeCCCCceEEEEEEEe
Confidence            999999877666554443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2e-10  Score=90.49  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=57.7

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC----------CeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----------KKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~----------~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      ++....|++|+|.|.+. .|.+.|.|++++..+....          +.+...+...++|+|.+++. +|+|.|+|.|.|
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~-~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS-SDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCG-GGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecCh-hhCEEEEEEEEC
Confidence            56788999999999865 5888999999987763211          12223344567899999999 999999999999


Q ss_pred             CCcceE
Q psy2775         637 ELGSAT  642 (785)
Q Consensus       637 ~~g~~~  642 (785)
                      ..++..
T Consensus        82 ~~~t~~   87 (93)
T d1ccza1          82 ITDTMK   87 (93)
T ss_dssp             CCSCEE
T ss_pred             CCcEEE
Confidence            887654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=3.8e-09  Score=88.66  Aligned_cols=92  Identities=15%  Similarity=0.220  Sum_probs=65.0

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC---CCeeEEEECCEEc-----------------cCCCCEEEeecCCccceEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPL-----------------QETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~i~W~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +..+...+.+.+|++|+|.|.+....   ...+.|++.+...                 ....+..+.. ........+|
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~sL   83 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK-ESIGEGKVAL   83 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEEC-TTGGGTEEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEee-ccccCCeEEE
Confidence            44555679999999999999986432   3468999865310                 0012233322 2223334679


Q ss_pred             EEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          75 TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      +|.+++.+|+|.|+|.+.+..+..+..+.|.|.
T Consensus        84 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          84 RIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEchhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            999999999999999999998888888888886

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.8e-09  Score=84.88  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=55.4

Q ss_pred             CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC------------CCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET------------DEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +.+....|++|+|.|.+ +.|.+.|.|++++..+...            .+..+...      ..+|+|.+++.+|+|.|
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~sL~I~~l~~~DsG~Y   75 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTV------SGSLTIYNLTSSDEDEY   75 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTT------TCCEEECSCCGGGCEEE
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCC------eeEEEEEecChhhCEEE
Confidence            35788999999999986 4588899999998765321            11121111      13599999999999999


Q ss_pred             EEEEEcCCeeEEEE
Q psy2775          88 TVVAKNREGEAKMD  101 (785)
Q Consensus        88 ~C~a~~~~~~~~~~  101 (785)
                      +|++.|..+.....
T Consensus        76 ~c~~~n~~~t~~~~   89 (93)
T d1ccza1          76 EMESPNITDTMKFF   89 (93)
T ss_dssp             EEECTTCCSCEEEE
T ss_pred             EEEEECCCcEEEEE
Confidence            99999887755433

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=4.1e-08  Score=82.14  Aligned_cols=86  Identities=9%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCC---CceEEEeCCEEe-------------cCC----CCeeEEe---eCCeEEEEEcc
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPL-------------LSS----PKKREIF---DGENIILELKE  620 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~---p~v~W~~~~~~i-------------~~~----~~~~~~~---~~~~~~L~i~~  620 (785)
                      +...+.+.+|++++|.|.+.+.+.   ..|.|++.+...             ...    .+.....   ..+..+|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            334578899999999999875432   358999865311             000    1111111   23467899999


Q ss_pred             CCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         621 ADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       621 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      ++. +|+|.|.|.+.+..|.....+.|.|.
T Consensus        88 v~~-~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          88 VRF-SDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             CCG-GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             Ech-hHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            999 99999999999998888887777776

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=1.1e-08  Score=80.57  Aligned_cols=83  Identities=16%  Similarity=0.091  Sum_probs=56.4

Q ss_pred             eeeeeecCeEEEEEEE-ecCC-CCceEEEeCCEEecCC--CCeeEE-----eeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         567 EKTVKEKGTIRLMAKV-KASP-APSIVWFRNNKPLLSS--PKKREI-----FDGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~-~g~P-~p~v~W~~~~~~i~~~--~~~~~~-----~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .+....|++|+|.|.. ...+ ...|.|+|++..+..-  ......     .....++|+|.+++. +|+|.|+|.+.|.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~-~DsG~Y~c~v~~~   82 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-DDSGTYNVTVYST   82 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCG-GGCEEEEEEEEET
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCH-HHCEEEEEEEEeC
Confidence            4567889999999963 2222 2379999998876321  000000     111235699999999 9999999999999


Q ss_pred             CcceEEEEEEEEE
Q psy2775         638 LGSATHGARVTVD  650 (785)
Q Consensus       638 ~g~~~~~~~l~V~  650 (785)
                      .|....+.++.+.
T Consensus        83 ~g~~~~~~~~~L~   95 (98)
T d1hnga1          83 NGTRILNKALDLR   95 (98)
T ss_dssp             TCCEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9987544444443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=2.7e-08  Score=78.23  Aligned_cols=81  Identities=12%  Similarity=0.282  Sum_probs=56.4

Q ss_pred             CceEecCCCeEEEEEEE-EecCC-CeeEEEECCEEccC---C-------CCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          20 KPVYAEENSEVTLEVRL-VAVPE-PDLLWYYNGEPLQE---T-------DEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~-~g~p~-~~i~W~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ..+....|++|+|.|.. ..... ..|.|++++..+..   .       .+..+..+       .+|+|.+++.+|+|.|
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n-------gSL~I~nl~~~DsG~Y   75 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN-------GDLKIKNLTRDDSGTY   75 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT-------SCEEESSCCGGGCEEE
T ss_pred             cEEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC-------ccEEEeCCCHHHCEEE
Confidence            35677889999999963 22222 47999999876521   1       11111111       2499999999999999


Q ss_pred             EEEEEcCCeeE--EEEeeEEEe
Q psy2775          88 TVVAKNREGEA--KMDIPVKVN  107 (785)
Q Consensus        88 ~C~a~~~~~~~--~~~~~v~v~  107 (785)
                      +|.+.+..|..  ...+.|.|+
T Consensus        76 ~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          76 NVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEEEETTCCEEEEEEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEEEEEEE
Confidence            99999888865  455666664

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.7e-08  Score=81.55  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=62.0

Q ss_pred             eEeeeeeeeeeeecCeEEEEEEEecCCCC----ceEEEeCCEE----------------ecC-C----CCeeEEe---eC
Q psy2775         560 LFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRNNKP----------------LLS-S----PKKREIF---DG  611 (785)
Q Consensus       560 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~~~~----------------i~~-~----~~~~~~~---~~  611 (785)
                      .+..+...+.+.+|++++|.|.+.+.+.+    .+.|++....                ... .    .+.....   ..
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   85 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS   85 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCC
Confidence            34444456788999999999999865443    5899873211                100 0    1111111   12


Q ss_pred             CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +.++|+|.+++. +|+|.|.|.+.|..|.....+.|.|.
T Consensus        86 ~~~sL~I~~v~~-~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          86 GDASINVTNLQL-SDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             TBCCEEECSCCG-GGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcccEE-ccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            346799999999 99999999999999988888888775

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=2.2e-08  Score=80.13  Aligned_cols=79  Identities=16%  Similarity=0.301  Sum_probs=52.7

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEEcc---------C----------CCCEEEeecCCccceEEEEEEcccCC
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ---------E----------TDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~---------~----------~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      +..+.+|++|.|.|.........+.|+|......         .          .+|..+..+       +.|+|.+++.
T Consensus         8 P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n-------gSL~I~~v~~   80 (107)
T d1l6za1           8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-------GSLLFQMITM   80 (107)
T ss_dssp             SSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT-------SCEEECSCCG
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc-------ccEEEcCCCc
Confidence            3457899999999984333356899999653211         0          123333221       2499999999


Q ss_pred             CCCeEEEEEEEcCCee-EEEEeeEEE
Q psy2775          82 REEGVYTVVAKNREGE-AKMDIPVKV  106 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~~~-~~~~~~v~v  106 (785)
                      +|+|.|+|.+.+..+. ....+.|+|
T Consensus        81 ~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          81 KDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             GGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             hhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            9999999999877653 334455544

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.7e-08  Score=81.56  Aligned_cols=93  Identities=16%  Similarity=0.270  Sum_probs=62.7

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCC----CeeEEEECCEEc----------------c-----CCCCEEEeecCCcc
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYNGEPL----------------Q-----ETDEVVFSDQSDMH   68 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~~~~~----------------~-----~~~~~~~~~~~~~~   68 (785)
                      .++.+...+.+.+|++++|.|.+.+.+.    ..+.|++.....                .     -.++..+.... ..
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~   84 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND-LK   84 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC-GG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccC-CC
Confidence            3444556689999999999999865433    358998732110                0     01233332211 11


Q ss_pred             ceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775          69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN  107 (785)
Q Consensus        69 ~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~  107 (785)
                      .....|+|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        85 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          85 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            122459999999999999999999998888777777775

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.4e-07  Score=77.14  Aligned_cols=90  Identities=13%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEec---CCCeeEEEECCEE-----c---------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAV---PEPDLLWYYNGEP-----L---------QETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~---p~~~i~W~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      ..|+.+.+.+|++|+|.|.....   ....+.|++....     +         ....+..+.......  ...|+|.++
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~sL~I~~l   81 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG--TFVVNIAQL   81 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTT--EEEEEECSC
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCC--EEEEEEhhh
Confidence            46788999999999999997432   2245789885321     1         112344444333332  356999999


Q ss_pred             CCCCCeEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775          80 KKREEGVYTVVAKNREGEAKMDIPVKVNT  108 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~  108 (785)
                      +.+|+|.|.|.+..........+.|.|..
T Consensus        82 ~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          82 SQDDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             CGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CcCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            99999999999875544445567777764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.49  E-value=3.5e-07  Score=73.29  Aligned_cols=79  Identities=16%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECC------EEccCCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNG------EPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ++.+.|..+.+.+|++++|.|...+.  ....+.||+..      ..+....++....+.....  ..|+|.+++.+|+|
T Consensus         1 rV~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~--~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           1 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKS--FSLRINDLTVEDGG   78 (112)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTE--EEEEECSCCGGGCE
T ss_pred             CCEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCce--eeeEecCCcCccCE
Confidence            35678899999999999999998543  34678999832      2233344554444433332  56999999999999


Q ss_pred             EEEEEEEcC
Q psy2775          86 VYTVVAKNR   94 (785)
Q Consensus        86 ~Y~C~a~~~   94 (785)
                      .|.|.+...
T Consensus        79 ~YyCA~~~~   87 (112)
T d1sq2n_          79 TYRCGLGVA   87 (112)
T ss_dssp             EEEEEECBT
T ss_pred             EEeEEEecC
Confidence            999988654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2.9e-07  Score=75.47  Aligned_cols=82  Identities=16%  Similarity=0.318  Sum_probs=56.9

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEc----------cCCCCEEEeecCCc-c--------ce
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPL----------QETDEVVFSDQSDM-H--------SY   70 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~----------~~~~~~~~~~~~~~-~--------~~   70 (785)
                      +|.+...|+.+.+++|++|+|.|.+.+.....+.||+.  +..+          ............+. .        ..
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            58889999999999999999999998777778999983  2211          00111111111000 0        01


Q ss_pred             EEEEEEcccCCCCCeEEEEEEEc
Q psy2775          71 VSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        71 ~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      ..+|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            24699999999999999998864

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.2e-07  Score=73.71  Aligned_cols=82  Identities=12%  Similarity=0.096  Sum_probs=55.1

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEe-cCCC--eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEP--DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      +|.|....   .+.+|+.++|+|.+.+ .|..  .|.|++++..+............+.....++|++.....+|...|+
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~lt   80 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV   80 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEE
Confidence            46666543   3779999999999964 5653  6899999987643222111222333444567888766666666999


Q ss_pred             EEEEcCCe
Q psy2775          89 VVAKNREG   96 (785)
Q Consensus        89 C~a~~~~~   96 (785)
                      |+|++..+
T Consensus        81 C~a~~~~~   88 (109)
T d1vcaa1          81 CRAKLHID   88 (109)
T ss_dssp             EEEEECSC
T ss_pred             EEEEcCcC
Confidence            99997754

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.43  E-value=7.4e-07  Score=71.78  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=56.1

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec--CCCeeEEEEC--CE----EccCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYN--GE----PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~--~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +.+.|..+.+.+|++|+|+|.+++.  ....+.||+.  +.    .+....+.....+....  ...|+|.+++.+|+|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~l~~~Dsa~   80 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSK--SFSLRISDLRVEDSGT   80 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTT--EEEEEECSCCGGGCEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCC--ceeeeecccccCCcce
Confidence            4567899999999999999999754  3356899973  22    23334555544433333  2469999999999999


Q ss_pred             EEEEEEc
Q psy2775          87 YTVVAKN   93 (785)
Q Consensus        87 Y~C~a~~   93 (785)
                      |.|.+..
T Consensus        81 YyCa~~~   87 (113)
T d1vesa_          81 YKCQAFY   87 (113)
T ss_dssp             EEEEEEE
T ss_pred             Eeeeeec
Confidence            9999864

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=8.7e-07  Score=71.55  Aligned_cols=79  Identities=13%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-CCCeeEEEEC--CE-E--c----------cCCCCEEEeecCCccceEEEEEEcc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYN--GE-P--L----------QETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~--~~-~--~----------~~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      ++..|..+.+.+|++|+|.|.+.+. ....+.||+.  ++ +  +          ....++.+.......  ...|+|.+
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~--~~~L~I~~   79 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRH--DFHMNILD   79 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSS--EEEEEESS
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCC--EEEEEECc
Confidence            5678999999999999999998543 3456899983  21 1  1          122345554443332  25699999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy2775          79 IKKREEGVYTVVAKNRE   95 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~   95 (785)
                      ++.+|+|.|.|.+....
T Consensus        80 ~~~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          80 TRRNDSGIYLCGAISLH   96 (114)
T ss_dssp             CCGGGCEEEEEEEECSS
T ss_pred             cCcCCCeEEEEEEEeCC
Confidence            99999999999987543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.41  E-value=3e-07  Score=74.52  Aligned_cols=78  Identities=17%  Similarity=0.287  Sum_probs=56.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--E---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--P---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +.+.|..+.+.+|++|+|.|.........+.||+...  .   |         ....++......  .....+|+|.+++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~sL~i~~~~   80 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA--DTKQSSLHITASQ   80 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCS--SSSEEEEEECSCC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecC--cccccccEEcccC
Confidence            4567899999999999999998766667899998431  1   1         011233332222  2234679999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy2775          81 KREEGVYTVVAKNR   94 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~   94 (785)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          81 LSDSASYICVVSDR   94 (114)
T ss_dssp             GGGCSEEEEEEECS
T ss_pred             hhhCcccceeeecC
Confidence            99999999999864

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=6e-07  Score=71.18  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEc------------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPL------------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      ++..|..+.+.+|++|+|.|.........+.||+.  +...            ....++.....++    ..+|+|.+++
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~----~~~L~I~~~~   79 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGT----DFVFTIENTL   79 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT----EEEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCC----eeeecccCCc
Confidence            45678899999999999999986555567999974  2211            1123333332221    2569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          80 SEDVGDYYCLQSF   92 (106)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCEEEeEecCc
Confidence            9999999998654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=3.8e-07  Score=73.77  Aligned_cols=79  Identities=13%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---cC------CCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---QE------TDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---~~------~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +...|..+.+.+|++|+|.|..++.....+.|||..  ..   +   ..      ..+..........  ...|+|.+++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~   80 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSG--RSTLYIAASQ   80 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTT--EEEEEESSCC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCC--EEEeeeecCC
Confidence            567789999999999999999876655678999832  11   1   11      1223332222222  3569999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy2775          81 KREEGVYTVVAKNRE   95 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~   95 (785)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          81 PGDSATYLCAVRPTS   95 (113)
T ss_dssp             GGGCEEEEEEEEESS
T ss_pred             CCCCcEEeEeEecCC
Confidence            999999999997543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=1.1e-06  Score=69.47  Aligned_cols=74  Identities=12%  Similarity=0.197  Sum_probs=54.2

Q ss_pred             eeeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEE---e---------cCCCCeeEEeeCCeEEEEEccCCCCCCce
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP---L---------LSSPKKREIFDGENIILELKEADSETDAG  628 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~---i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G  628 (785)
                      ..+..+.+.+|++|+|.|.........+.|||.  |..   +         ....+......+....|.|.+++. +|+|
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa   84 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLES-EDFA   84 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCS
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcc-cCCe
Confidence            334567899999999999988777767999982  211   1         112234444456678999999999 9999


Q ss_pred             eEEEEEEcC
Q psy2775         629 DYKVVATNE  637 (785)
Q Consensus       629 ~Y~C~a~n~  637 (785)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1c5cl1          85 DYYCLQYAS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCcC
Confidence            999987653

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3e-07  Score=72.19  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=49.0

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEECCEE--ccCC------------CCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEP--LQET------------DEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .+...+|++|+|+|..+......+.|++....  +...            +++..... .......+|+|.+++.+|+|.
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS-LWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGG-GGGGTBCCEEECSCCGGGCEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEec-cCCCCEEEEEECCCChHHCEE
Confidence            46778999999999987666678999986432  1111            11111111 111122459999999999999


Q ss_pred             EEEEEEcC
Q psy2775          87 YTVVAKNR   94 (785)
Q Consensus        87 Y~C~a~~~   94 (785)
                      |.|.+.+.
T Consensus        82 Y~C~v~~~   89 (97)
T d2nxyb1          82 YICEVEDQ   89 (97)
T ss_dssp             EEEEETTE
T ss_pred             EEEEEecC
Confidence            99999763

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=1e-06  Score=69.87  Aligned_cols=73  Identities=14%  Similarity=0.250  Sum_probs=54.3

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeC---CEE-e----------cCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN---NKP-L----------LSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~---~~~-i----------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+....+.+|++|+|.|.........+.||+.   ..+ +          ...+++.....+....|+|.++.. +|+|.
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~-~DsA~   84 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEP-EDIAT   84 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCG-GGCSE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcc-cCCEe
Confidence            34567899999999999987766667999982   111 1          112344555566778999999999 99999


Q ss_pred             EEEEEEcC
Q psy2775         630 YKVVATNE  637 (785)
Q Consensus       630 Y~C~a~n~  637 (785)
                      |.|.+.+.
T Consensus        85 YyCa~~~~   92 (106)
T d1a0ql1          85 YYCLQYYN   92 (106)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99987654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.1e-07  Score=72.26  Aligned_cols=82  Identities=10%  Similarity=-0.003  Sum_probs=55.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      ..|.+...|.. .|..|++|+|.|... .+...+.|++++..............   ......+.|.+++.+|+|.|+|.
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~---~~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFW---NETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC-------CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCC---CCceEEEEecCCCHHHCceEEEE
Confidence            45888888876 588999999999864 45678999987642111111110000   11114589999999999999999


Q ss_pred             EEcCCee
Q psy2775          91 AKNREGE   97 (785)
Q Consensus        91 a~~~~~~   97 (785)
                      ..+....
T Consensus        81 y~~~~~~   87 (99)
T d1ucta1          81 YRIGHYR   87 (99)
T ss_dssp             EEETTTE
T ss_pred             EECCCcc
Confidence            9876653

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.3e-06  Score=69.16  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=52.8

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E-E-c----------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E-P-L----------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~-~-~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|.|.........+.||+..  . + +          ....+......+    ....|+|.+++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~L~I~~~~   78 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSG----RDYSFSISNLE   78 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET----TEEEEEECSCC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCC----CEeeeEehhhc
Confidence            456789999999999999999865555579999842  1 1 0          011233332222    12569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        79 ~~DsA~YyCa~~~   91 (106)
T d1a0ql1          79 PEDIATYYCLQYY   91 (106)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCEeEEEEEeC
Confidence            9999999998754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=2.1e-06  Score=68.40  Aligned_cols=72  Identities=11%  Similarity=0.178  Sum_probs=53.9

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      +....+.+|++|+|.|.........+.|||..  .   .+         ....++..........|+|.++.. +|+|.|
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DSa~Y   86 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQA-DDDADY   86 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhhee-cCCceE
Confidence            44678999999999999887766679999831  1   11         123344455566778999999999 999999


Q ss_pred             EEEEEcC
Q psy2775         631 KVVATNE  637 (785)
Q Consensus       631 ~C~a~n~  637 (785)
                      .|.+...
T Consensus        87 yCa~~~~   93 (107)
T d1kcvl1          87 YCGQSYS   93 (107)
T ss_dssp             EEEECSS
T ss_pred             EEEecCC
Confidence            9987643

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.4e-06  Score=69.79  Aligned_cols=88  Identities=14%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             CCCCceecCCCceEeccCCcEEEEEEEec-cCCC--eEEEeECCEEcccceEEEe-------CCEEEEEEcccCCCCcEE
Q psy2775         111 PEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP--KVEWYKDGKLIKDRQITSE-------KNTHTLTLIQCSTKDKGR  180 (785)
Q Consensus       111 ~~~p~i~~~~~~~~~~~G~~v~l~C~~~g-~p~~--~v~W~~~g~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~  180 (785)
                      |..|.|....   .+.+|+.++|+|.+.+ +|.+  .|.|++++..+........       ...+.|++.....++...
T Consensus         2 P~~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~   78 (109)
T d1vcaa1           2 PKDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKV   78 (109)
T ss_dssp             CSCCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCE
T ss_pred             CCCCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcE
Confidence            4567776543   4679999999999965 6754  6999999988764321110       113457777666677779


Q ss_pred             EEEEEEcCCee-------EEEEEEEEee
Q psy2775         181 YSVKVTNKEGT-------VESAANLNVD  201 (785)
Q Consensus       181 Y~C~a~n~~g~-------~~~~~~l~V~  201 (785)
                      |+|+|.+..+.       .+....|+|.
T Consensus        79 ltC~a~~~~~~~~~~~~~~~t~~~L~V~  106 (109)
T d1vcaa1          79 LVCRAKLHIDEMDSVPTVRQAVKELQVY  106 (109)
T ss_dssp             EEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred             EEEEEEcCcCCccccccccceeEEeEEE
Confidence            99999988643       2344556665

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.2e-07  Score=75.81  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecC---------------CCC--eeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS---------------SPK--KREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~---------------~~~--~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      +..+.+|++|.|.|.........+.|+|+......               +..  -+... ..+++|.|.+++. +|+|.
T Consensus         8 P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l-~~ngSL~I~~v~~-~D~G~   85 (107)
T d1l6za1           8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII-YSNGSLLFQMITM-KDMGV   85 (107)
T ss_dssp             SSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE-CTTSCEEECSCCG-GGCEE
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE-cccccEEEcCCCc-hhCEE
Confidence            34577999999999743333458999996532110               000  01111 1234699999999 99999


Q ss_pred             EEEEEEcCCc-ceEEEEEEEE
Q psy2775         630 YKVVATNELG-SATHGARVTV  649 (785)
Q Consensus       630 Y~C~a~n~~g-~~~~~~~l~V  649 (785)
                      |+|.+.+..+ ....++.|.|
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            9999988764 3444555554

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=1.2e-06  Score=69.58  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=53.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      ++..|..+.+.+|++|+|.|..++.....+.||+..  ..   +         ....++.....+.  .  ..|+|.+++
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~--~--~~L~I~~~~   79 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGK--D--YTLSITSLQ   79 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSS--S--EEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCC--e--EEeEEcccc
Confidence            356688999999999999999865555579999842  11   0         1123444433222  1  569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1ospl1          80 TEDVATYFCQQYW   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             cccCCcEEEeecc
Confidence            9999999998764

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.32  E-value=1.9e-06  Score=68.34  Aligned_cols=75  Identities=11%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCc
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDA  627 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~  627 (785)
                      ...+....+.+|++|+|.|.........+.|||..  .   .|         ....+.....++....|+|.++.. +|+
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Ds   83 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP-EDF   83 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGC
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEecccee-CcC
Confidence            34455778999999999999886656689999832  1   11         112344444566778999999999 999


Q ss_pred             eeEEEEEEcC
Q psy2775         628 GDYKVVATNE  637 (785)
Q Consensus       628 G~Y~C~a~n~  637 (785)
                      |.|.|.+.+.
T Consensus        84 A~YyCa~~~~   93 (107)
T d1tjgl1          84 ATYYCQQLHF   93 (107)
T ss_dssp             SEEEEEECSB
T ss_pred             ceEEEEECcC
Confidence            9999976543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=2.7e-06  Score=67.38  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee-------c--CCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL-------L--SSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i-------~--~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+....+.+|++++|.|...+.....+.|||..  .   .+       .  ...+.....++....|+|.++.. +|+|.
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~-~Dsa~   85 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEP-EDFAM   85 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCT-TCCSE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEe-ccceE
Confidence            345667899999999999987666689999821  1   11       0  11223334455677999999999 99999


Q ss_pred             EEEEEEcC
Q psy2775         630 YKVVATNE  637 (785)
Q Consensus       630 Y~C~a~n~  637 (785)
                      |.|.+.+.
T Consensus        86 YyCA~~~~   93 (108)
T d1jhll_          86 YICQQHNE   93 (108)
T ss_dssp             EEEEECSS
T ss_pred             EEEeeCCC
Confidence            99987654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.3e-06  Score=69.48  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=53.7

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EEc------------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPL------------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|+|.........+.||+..  ..+            ....++.......    ...|+|.+++
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~----~~~L~I~~~~   79 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGT----DFTLSINSVE   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT----EEEEEESSCC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCC----EEEEEEcccC
Confidence            456789999999999999999865555679999742  111            1123343333222    2569999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy2775          81 KREEGVYTVVAKNR   94 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~   94 (785)
                      .+|+|.|.|.+.+.
T Consensus        80 ~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          80 TEDFGMYFCQQANS   93 (107)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cCCCEEEEEEcCCC
Confidence            99999999976543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.2e-06  Score=69.28  Aligned_cols=75  Identities=15%  Similarity=0.148  Sum_probs=52.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEE----c--------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEP----L--------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~----~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|+|.........+.||+.  +..    +        ...++......++    ...|+|.+++
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~I~~l~   79 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGS----DYSLTISSLE   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETT----EEEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCC----EEEEEEhhhc
Confidence            45678899999999999999987656667999983  221    1        1112333322221    2569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          80 SEDFADYYCLQYA   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCeEEEEecCc
Confidence            9999999998754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.4e-06  Score=69.21  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=52.9

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      +....+.+|++|+|.|...+.....+.|||..  .   .+         ....++.....+....|+|.++.. +|+|.|
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~Dsa~Y   86 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQT-EDVATY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCG-GGCSEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccc-ccCCcE
Confidence            44678999999999999887665679999821  1   00         112334444456678999999999 999999


Q ss_pred             EEEEEcC
Q psy2775         631 KVVATNE  637 (785)
Q Consensus       631 ~C~a~n~  637 (785)
                      .|.+...
T Consensus        87 yCa~~~~   93 (107)
T d1ospl1          87 FCQQYWS   93 (107)
T ss_dssp             EEEECSS
T ss_pred             EEeeccC
Confidence            9987644

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=2.2e-06  Score=70.08  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEE------ec--CC--------------CCeeEE-eeCC
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP------LL--SS--------------PKKREI-FDGE  612 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~------i~--~~--------------~~~~~~-~~~~  612 (785)
                      ||.+...++...+.+|++++|.|.+.+...+.+.|||.  |..      +.  ..              .++... ..+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            47777778888999999999999999888888999982  211      10  00              011111 2234


Q ss_pred             eEEEEEccCCCCCCceeEEEEEE
Q psy2775         613 NIILELKEADSETDAGDYKVVAT  635 (785)
Q Consensus       613 ~~~L~i~~~~~~~d~G~Y~C~a~  635 (785)
                      ..+|+|.+++. +|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~-~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSK-ENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCG-GGCEEEEEEEE
T ss_pred             EeEEEEccccc-CCCEEEEeeEe
Confidence            57899999999 99999999876

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.2e-06  Score=69.36  Aligned_cols=73  Identities=12%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEE------------ecCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP------------LLSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~------------i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+....+.+|++++|.|...+.....+.|||.  |..            -....++.....+..++|+|.++.. +|+|.
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~Dsa~   85 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS-EDVGD   85 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred             eCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcc-ccCEE
Confidence            34567899999999999987766667999973  211            0122344444456778999999999 99999


Q ss_pred             EEEEEEcC
Q psy2775         630 YKVVATNE  637 (785)
Q Consensus       630 Y~C~a~n~  637 (785)
                      |.|.+.+.
T Consensus        86 YyCa~~~~   93 (106)
T d1i8ka_          86 YYCLQSFN   93 (106)
T ss_dssp             EEEEECSS
T ss_pred             EeEecCcc
Confidence            99987653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=3.3e-07  Score=74.34  Aligned_cols=78  Identities=17%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +.+.|..+.+.+|++|+|.|.........+.|||..  ..   +         ....++.+..+...  ....|+|.+++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~   81 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSS--SSFHLQKSSAQ   81 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGG--TBCCEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCC--CeEEeeccccc
Confidence            456788899999999999999976666789999842  11   1         01122333222211  12459999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy2775          81 KREEGVYTVVAKNR   94 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~   94 (785)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          82 LSDSALYYCALFLA   95 (115)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             cccCccceEEEEcC
Confidence            99999999988643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.30  E-value=8.8e-07  Score=71.85  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEEC--CEE---cc------------CCCCEEEeecCCccceEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYN--GEP---LQ------------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~--~~~---~~------------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +++..|..+.+.+|++|+|.|...+. ....+.||+.  +..   |.            ...++........  ...+|+
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~--~~~~L~   79 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQ--KAFHLV   79 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGG--TEEEEE
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCce--eEEeee
Confidence            35677889999999999999998544 4567899972  211   10            1123433332222  235699


Q ss_pred             EcccCCCCCeEEEEEEEcCC
Q psy2775          76 IKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      |.+++.+|+|.|.|.+....
T Consensus        80 I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          80 ISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             ESSCCGGGCEEEEEEEECTT
T ss_pred             ecCccccccccceeeEecCC
Confidence            99999999999999887543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=1.2e-06  Score=70.96  Aligned_cols=78  Identities=15%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEE---c---cCC-------CCEEEeecCCccceEEEEEEccc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEP---L---QET-------DEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~---~---~~~-------~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      +...|..+.+.+|++|+|.|.........+.||+.  +..   +   ...       .+...........  ..|+|.++
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~I~~~   80 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSS--FHLRKASV   80 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTB--CCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCE--EEEecccc
Confidence            56677889999999999999987655667899973  211   1   001       1112222222222  35999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy2775          80 KKREEGVYTVVAKNR   94 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~   94 (785)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          81 HWSDSAVYFCAVSGF   95 (115)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             cccccceecccccCC
Confidence            999999999987743

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.2e-06  Score=68.65  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=50.8

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEEECCE--E---c---------cCCCCEEEeecCCccceEEEEEEcccCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNGE--P---L---------QETDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      .++.+.+.+|++|+|.|......  ...+.|+|...  .   +         ....+..+.......  ..+|+|.+++.
T Consensus         2 ~~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~--~~~L~I~~l~~   79 (108)
T d1hkfa_           2 KAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAG--FFTVTMTDLRE   79 (108)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTT--EEEEEECSCCG
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCC--EEEEEEhhhCC
Confidence            35668899999999999975332  24578997421  1   1         111344443333322  35699999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy2775          82 REEGVYTVVAKNRE   95 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~   95 (785)
                      +|+|.|.|.+....
T Consensus        80 ~DsG~Y~C~v~~~~   93 (108)
T d1hkfa_          80 EDSGHYWCRIYRPS   93 (108)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             CCCEEEEEEEecCC
Confidence            99999999988544

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.29  E-value=1.7e-06  Score=68.60  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E---Ec---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E---PL---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|.|...+.-...+.||+..  +   .+         ....++.....+    ....|+|.+++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~----~~~~L~I~~~~   78 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG----TEFTLTISGLQ   78 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEEESCC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC----CEEEEEEcccc
Confidence            457799999999999999999865555678999842  1   11         111233333222    12569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        79 ~~Dsa~YyCa~~~   91 (106)
T d1op3k1          79 FDDFATYHCQHYA   91 (106)
T ss_dssp             GGGCSEEEEEEEC
T ss_pred             ccCCCcEeeeeCC
Confidence            9999999998764

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=2.7e-06  Score=67.62  Aligned_cols=73  Identities=14%  Similarity=0.237  Sum_probs=54.3

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--EEe------------cCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL------------LSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~i------------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+..+.+.+|++++|.|.........+.|||..  ...            ....++....++....|+|.+++. +|+|.
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~Dsa~   85 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET-EDFGM   85 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCc-CCCEE
Confidence            345678999999999999876656679999832  110            112345555567778999999999 99999


Q ss_pred             EEEEEEcC
Q psy2775         630 YKVVATNE  637 (785)
Q Consensus       630 Y~C~a~n~  637 (785)
                      |.|.+.+.
T Consensus        86 YyCa~~~~   93 (107)
T d1j1pl_          86 YFCQQANS   93 (107)
T ss_dssp             EEEEECSS
T ss_pred             EEEEcCCC
Confidence            99987654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.28  E-value=3.2e-06  Score=66.89  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC-----EEe---------cCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN-----KPL---------LSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~-----~~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+....+.+|++++|.|...+.-...+.||+..     +-+         ...+++....++....|+|.+++. +|+|.
T Consensus         6 ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~   84 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQF-DDFAT   84 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG-GGCSE
T ss_pred             cCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccc-cCCCc
Confidence            355778999999999999876656679999832     111         112344555567778999999999 99999


Q ss_pred             EEEEEEc
Q psy2775         630 YKVVATN  636 (785)
Q Consensus       630 Y~C~a~n  636 (785)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.28  E-value=1.5e-06  Score=70.42  Aligned_cols=77  Identities=9%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECC-----EEc------cC-----------CCCEEEeecCCccceE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNG-----EPL------QE-----------TDEVVFSDQSDMHSYV   71 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~-----~~~------~~-----------~~~~~~~~~~~~~~~~   71 (785)
                      +...|..+.+.+|++|+|.|.+.+. ....+.||+..     +.+      ..           ..+...........  
T Consensus         1 v~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--   78 (115)
T d2atpb1           1 LIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRR--   78 (115)
T ss_dssp             CEEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSS--
T ss_pred             CEeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCe--
Confidence            3567899999999999999998763 44578999742     211      01           11222222222222  


Q ss_pred             EEEEEcccCCCCCeEEEEEEEc
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      .+|+|.+++.+|+|.|.|.+..
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            4599999999999999998764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.5e-07  Score=70.62  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCCEE--ecC--------CC----CeeEEe---eCCeEEEEEccCCCCCCcee
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP--LLS--------SP----KKREIF---DGENIILELKEADSETDAGD  629 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~--i~~--------~~----~~~~~~---~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+...+|++|+|.|.........+.|++....  +..        ..    +....+   ..+..+|+|.+++. +|+|.
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~-~DsG~   81 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDT   81 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCG-GGCEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCCh-HHCEE
Confidence            45678999999999988777778999985431  111        00    111111   22356799999999 99999


Q ss_pred             EEEEEEc
Q psy2775         630 YKVVATN  636 (785)
Q Consensus       630 Y~C~a~n  636 (785)
                      |.|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999965

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=2.4e-06  Score=67.75  Aligned_cols=70  Identities=16%  Similarity=0.228  Sum_probs=52.2

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCC-----EEe---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNN-----KPL---------LSSPKKREIFDGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~-----~~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      ..+.+.+|++++|.|...+.....+.|||..     +.+         ....++.....+..+.|+|.+++. +|+|.|.
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~Yy   86 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEA-DDTAIYF   86 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcCh-hhCCCcc
Confidence            3568899999999999987666689999831     111         112344455566778999999999 9999999


Q ss_pred             EEEEc
Q psy2775         632 VVATN  636 (785)
Q Consensus       632 C~a~n  636 (785)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1lk3l1          87 CQQSW   91 (106)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            97653

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=8.4e-07  Score=68.74  Aligned_cols=88  Identities=8%  Similarity=0.004  Sum_probs=60.1

Q ss_pred             CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      |.+...+.. .|..|+.|+|.|... .+...+.|+|+|........ .....+....|.|.+++. .|+|.|+|...+..
T Consensus         5 PsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~-~~~G~Y~C~y~~~~   80 (95)
T d1olla1           5 PFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNS-RMAGQYSCIYRVGE   80 (95)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCG-GGCEEEEEEEEETT
T ss_pred             CEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeec-CCCceEEEEeCCCC
Confidence            666665534 578999999999865 34568999999865421110 000123456799999999 99999999998876


Q ss_pred             cceEEEEEEEEE
Q psy2775         639 GSATHGARVTVD  650 (785)
Q Consensus       639 g~~~~~~~l~V~  650 (785)
                      +....+-.|.+.
T Consensus        81 ~~S~~Sd~leL~   92 (95)
T d1olla1          81 LWSEPSNLLDLV   92 (95)
T ss_dssp             EECCCCCCEEEE
T ss_pred             CccCCCCCEEEE
Confidence            655444444443

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=7e-07  Score=72.42  Aligned_cols=79  Identities=15%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---cCC-------CCEEEeecCCccceEEEEEEcc
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---QET-------DEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---~~~-------~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      .++..|..+.+.+|++|+|+|..+......+.||+..  +.   |   ...       .+..........  ...|+|.+
T Consensus         2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~   79 (115)
T d1j8hd1           2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSET--SFHLTKPS   79 (115)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGT--BCCEEESS
T ss_pred             CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCC--EEEEeecc
Confidence            3567788999999999999999876656679999832  11   1   111       122222111111  13599999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy2775          79 IKKREEGVYTVVAKNR   94 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~   94 (785)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          80 AHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             ccccCCccceeeecCC
Confidence            9999999999999754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=2e-06  Score=68.51  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|+|..+......+.||+..  ..   +         ....+.......    ....|+|.+++
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~   79 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA----TDFTLTISSVQ   79 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccC----CeeecEEHhhe
Confidence            456789999999999999999876555679999742  11   1         112233332222    12569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        80 ~~DSa~YyCa~~~   92 (107)
T d1kcvl1          80 ADDDADYYCGQSY   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ecCCceEEEEecC
Confidence            9999999998754

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.1e-06  Score=68.91  Aligned_cols=79  Identities=10%  Similarity=-0.032  Sum_probs=55.7

Q ss_pred             CCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc----eEEEeCCEEEEEEcccCCCCcEEEEEEEE
Q psy2775         111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR----QITSEKNTHTLTLIQCSTKDKGRYSVKVT  186 (785)
Q Consensus       111 ~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  186 (785)
                      ...|.+...+.. .+..|++|+|.|... .+...+.|+|+|......    ..........+.|.+++.+|+|.|+|...
T Consensus         5 lpkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~   82 (99)
T d1ucta1           5 FPMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   82 (99)
T ss_dssp             SCCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEE
Confidence            456788777654 588999999999875 456689999976422111    11122334579999999999999999998


Q ss_pred             cCCee
Q psy2775         187 NKEGT  191 (785)
Q Consensus       187 n~~g~  191 (785)
                      +....
T Consensus        83 ~~~~~   87 (99)
T d1ucta1          83 IGHYR   87 (99)
T ss_dssp             ETTTE
T ss_pred             CCCcc
Confidence            87653

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.25  E-value=2.8e-06  Score=67.31  Aligned_cols=76  Identities=17%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE-----Ec---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-----PL---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +.+.|..+.+.+|++|+|.|..+......+.||+...     .+         ....+......+    ....|+|.+++
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~l~   79 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG----TDFTLTISSLE   79 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS----SEEEEEECSCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCC----CEEEeEeeeeE
Confidence            4567889999999999999998665556799998421     11         011222222222    12569999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy2775          81 KREEGVYTVVAKNR   94 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~   94 (785)
                      .+|+|.|.|.+.+.
T Consensus        80 ~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          80 PEDFAMYICQQHNE   93 (108)
T ss_dssp             TTCCSEEEEEECSS
T ss_pred             eccceEEEEeeCCC
Confidence            99999999976543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.3e-06  Score=66.21  Aligned_cols=79  Identities=11%  Similarity=0.089  Sum_probs=55.5

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      ..|.|...|..+ |..|++|+|.|... .+...+.|++++........     ........+.+.|.+++..|+|.|+|.
T Consensus         3 PKPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-----~~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (95)
T d1olla1           3 PKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCI   75 (95)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-----ccCCCccEEEEEEeeeecCCCceEEEE
Confidence            358888888765 67999999999963 35578899998864321110     000011225699999999999999999


Q ss_pred             EEcCCe
Q psy2775          91 AKNREG   96 (785)
Q Consensus        91 a~~~~~   96 (785)
                      ..+...
T Consensus        76 y~~~~~   81 (95)
T d1olla1          76 YRVGEL   81 (95)
T ss_dssp             EEETTE
T ss_pred             eCCCCC
Confidence            876544

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=2.4e-06  Score=67.78  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E---Ec---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E---PL---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|.|..+......+.||+..  .   .+         ....++.....+    ....|+|.+++
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~----~~~~L~I~~~~   79 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG----QDYSLTISSLE   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC----CEEEccccccC
Confidence            456788999999999999999865555678999742  1   11         011233333222    12569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|....
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1d5il1          80 YEDMGIYYCLQYD   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             CcCCEEEEeeecc
Confidence            9999999998654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.4e-06  Score=70.29  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=52.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCEE-----c----c-----------CCCCEEEeecCCccceEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEP-----L----Q-----------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~-----~----~-----------~~~~~~~~~~~~~~~~~~~   73 (785)
                      +...|..+++.+|++|+|.|.+.+. ....+.||+....     +    .           ...++.....++    ...
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~----~~~   78 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGD----TFV   78 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETT----EEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCC----Chh
Confidence            5677899999999999999998654 3456899984310     0    0           012233222221    246


Q ss_pred             EEEcccCCCCCeEEEEEEEcC
Q psy2775          74 VTIKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~~   94 (785)
                      |+|.+++.+|+|.|.|.+...
T Consensus        79 L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          79 LTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEESSCCGGGCEEEEEEEEET
T ss_pred             cEEccCCCCCCEEEeEeEcCC
Confidence            999999999999999998754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=2.2e-06  Score=67.98  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|.|.....-...+.||+..  ..   |         ....++.....+.    ...|+|.+++
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~----~~~L~I~~~~   79 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGT----DFTLTINNVQ   79 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT----EEEEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCC----eeeeeechhh
Confidence            466788899999999999999865545679999742  11   1         1123343333221    2559999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        80 ~~DsA~YyCa~~~   92 (107)
T d1mexl1          80 SEDLAEYFCQQYN   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             eecceeEEEeECC
Confidence            9999999998654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.23  E-value=2e-06  Score=68.29  Aligned_cols=75  Identities=15%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE-----Ec---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-----PL---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|+|.........+.||+...     .|         ....+......+    ....|+|.+++
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~   79 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG----TEFTLTISTLR   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET----TEEEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccC----CEEEEEeccce
Confidence            4567999999999999999998654556899998421     11         112233332222    23569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+.+
T Consensus        80 ~~DsA~YyCa~~~   92 (107)
T d1tjgl1          80 PEDFATYYCQQLH   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             eCcCceEEEEECc
Confidence            9999999997653

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=3.4e-06  Score=69.13  Aligned_cols=91  Identities=16%  Similarity=0.278  Sum_probs=56.7

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec----CCCeeEEEECCE------Ec---------c-----CCCCEEEeecCCccce
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV----PEPDLLWYYNGE------PL---------Q-----ETDEVVFSDQSDMHSY   70 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~----p~~~i~W~~~~~------~~---------~-----~~~~~~~~~~~~~~~~   70 (785)
                      +...|..+.+..|++|+|.|.....    ....+.|++...      .+         .     -.+|..+..+..  ..
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~   79 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPS--WK   79 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGG--GT
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECC--CC
Confidence            3456888999999999999997532    234789987321      01         0     012333322211  11


Q ss_pred             EEEEEEcccCCCCCeEEEEEEEcCCe--eEEEEeeEEEe
Q psy2775          71 VSIVTIKSIKKREEGVYTVVAKNREG--EAKMDIPVKVN  107 (785)
Q Consensus        71 ~~~L~i~~~~~~D~G~Y~C~a~~~~~--~~~~~~~v~v~  107 (785)
                      ...|+|.+++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            24599999999999999999987543  23445566654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.9e-07  Score=72.60  Aligned_cols=78  Identities=12%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC-------CCeeEEEECCEEc--------c---------CCCCEEEeecCCccceEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP-------EPDLLWYYNGEPL--------Q---------ETDEVVFSDQSDMHSYVS   72 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p-------~~~i~W~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~   72 (785)
                      ..|..+++.+|++|+|.|..+...       ...+.|++....-        .         -.++..+..+.  .....
T Consensus         6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~   83 (121)
T d2g5ra1           6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDP--QTKNC   83 (121)
T ss_dssp             ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCG--GGTBC
T ss_pred             EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeC--cCCEE
Confidence            346789999999999999985221       1357899864321        0         01244443322  22235


Q ss_pred             EEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          73 IVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      +|+|.+++.+|+|.|.|.+.....
T Consensus        84 sL~I~~v~~~DsG~Y~C~v~~~~~  107 (121)
T d2g5ra1          84 TLSIRDARMSDAGRYFFRMEKGNI  107 (121)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEECCCChHHCEEEEEEEEeCCc
Confidence            699999999999999999976543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=2.8e-06  Score=67.40  Aligned_cols=72  Identities=11%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEEECCE-----Ec---------cCCCCEEEeecCCccceEEEEEEcccCCCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-----PL---------QETDEVVFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      .|..+.+.+|++|+|+|..++.....+.||+...     .+         ....++.....+.    ...|+|.+++.+|
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~----~~~L~I~~~~~~D   81 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGT----DFTLTIDPVEADD   81 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT----EEEEEESSCCGGG
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCC----EEEeEECCcChhh
Confidence            3457999999999999998765556799997421     11         0122333332221    2569999999999


Q ss_pred             CeEEEEEEEc
Q psy2775          84 EGVYTVVAKN   93 (785)
Q Consensus        84 ~G~Y~C~a~~   93 (785)
                      +|.|.|.+..
T Consensus        82 sa~YyCa~~~   91 (106)
T d1lk3l1          82 TAIYFCQQSW   91 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CCCccccccc
Confidence            9999997653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.21  E-value=4.1e-06  Score=66.33  Aligned_cols=71  Identities=14%  Similarity=0.238  Sum_probs=51.8

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeC--CE---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK---PL---------LSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      +....+.+|++|+|.|.....-...+.|||.  |.   .|         ....++.....+..+.|+|.++.. +|+|.|
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~-~DsA~Y   86 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQS-EDLAEY   86 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhe-ecceeE
Confidence            3456789999999999987665567999982  11   11         012344444556778999999999 999999


Q ss_pred             EEEEEc
Q psy2775         631 KVVATN  636 (785)
Q Consensus       631 ~C~a~n  636 (785)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1mexl1          87 FCQQYN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeECC
Confidence            998654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=4.4e-06  Score=67.76  Aligned_cols=77  Identities=21%  Similarity=0.373  Sum_probs=54.3

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEE---c----c----------CCCCEEEeecCCccceEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEP---L----Q----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~---~----~----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +...|..+.+.+|++|+|.|...+.....+.||+.  ++.   |    .          ...++......+   ....|+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~L~   80 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASP---TLSTLT   80 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSS---SEEEEE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccc---cccccc
Confidence            56778899999999999999987666678999984  221   1    0          012233322221   125699


Q ss_pred             EcccCCCCCeEEEEEEEcC
Q psy2775          76 IKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~   94 (785)
                      |.+++.+|+|.|.|.+...
T Consensus        81 i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          81 VTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             ECSCCGGGCEEEEEEEECS
T ss_pred             ccccccccCceEEEEEecC
Confidence            9999999999999998653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=3.1e-06  Score=67.28  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E---Ec---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E---PL---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|.|.........+.||+..  +   .|         ....++.....+    ....|+|.+++
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~----~~~~L~I~~~~   79 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG----TQFSLKINSLL   79 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEESSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccC----CEEEEEEcccc
Confidence            456789999999999999999865555679999832  1   11         011233332221    23569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        80 ~~DSa~YyCA~~~   92 (109)
T d1mqkl_          80 PEDFGSYYCQHHY   92 (109)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ccCCeeEEEeeeC
Confidence            9999999998764

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=2.1e-06  Score=69.39  Aligned_cols=74  Identities=16%  Similarity=0.302  Sum_probs=52.9

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCCE-----Ee---------cCCCCeeEEe--eCCeEEEEEccCCCCCCc
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-----PL---------LSSPKKREIF--DGENIILELKEADSETDA  627 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~-----~i---------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~  627 (785)
                      .+....+.+|++|+|.|.....+...+.|||...     .|         ....++....  ....++|+|.+++. +|+
T Consensus         6 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~-~Ds   84 (114)
T d2cdea1           6 SPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL-SDS   84 (114)
T ss_dssp             ECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG-GGC
T ss_pred             eCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh-hhC
Confidence            3457789999999999999877777899998321     00         0011222211  23567899999999 999


Q ss_pred             eeEEEEEEcCC
Q psy2775         628 GDYKVVATNEL  638 (785)
Q Consensus       628 G~Y~C~a~n~~  638 (785)
                      |.|.|.+.+..
T Consensus        85 g~Y~Ca~~~~~   95 (114)
T d2cdea1          85 ASYICVVSDRG   95 (114)
T ss_dssp             SEEEEEEECSC
T ss_pred             cccceeeecCC
Confidence            99999998743

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=1.7e-06  Score=70.04  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=53.5

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEec-CCCeeEEEEC--CEE---c---c-C------CCCEEEeecCCccceEEEEEEc
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYN--GEP---L---Q-E------TDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~--~~~---~---~-~------~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .++..|..+.+.+|++|+|.|..... ....+.||+.  +..   +   . .      ..+..+.......  ...|+|.
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~   79 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTS--SFNFTIT   79 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTT--EEEEEES
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCC--EEEEeec
Confidence            35667889999999999999987543 3456899983  221   1   0 0      1122232222222  3569999


Q ss_pred             ccCCCCCeEEEEEEEcCC
Q psy2775          78 SIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~~   95 (785)
                      +++.+|+|.|.|.+....
T Consensus        80 ~~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          80 ASQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             SCCGGGCEEEEEEEECSB
T ss_pred             ccccccCCCceEeCCCCC
Confidence            999999999999887543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=4.7e-06  Score=67.13  Aligned_cols=78  Identities=17%  Similarity=0.283  Sum_probs=53.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +...|..+.+.+|++|+|.|...+. ...+.||+..  ..   +         ....+..+.......  ...|+|.+++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~   79 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARK--DSSLHITAAQ   79 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSS--EEEEEESSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccc--eeeeeecCCC
Confidence            4567889999999999999997543 3478999832  11   0         111233333333322  3569999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy2775          81 KREEGVYTVVAKNRE   95 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~   95 (785)
                      .+|+|.|.|.+....
T Consensus        80 ~~Dsa~YyCa~~~~~   94 (115)
T d1ogad1          80 PGDTGLYLCAGAGSQ   94 (115)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             ccceeeEcccccCCC
Confidence            999999999887543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.18  E-value=6.4e-06  Score=65.63  Aligned_cols=72  Identities=8%  Similarity=0.138  Sum_probs=53.6

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC-----EEe---------cCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN-----KPL---------LSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~-----~~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+....+.+|++++|.|...+.-...+.|||..     +.+         ....++....++....|+|.+++. +|+|.
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~-~Dsa~   87 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQP-EDIAT   87 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred             eCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeecee-CcCce
Confidence            345678999999999999987666679999821     111         112344445566778999999999 99999


Q ss_pred             EEEEEEc
Q psy2775         630 YKVVATN  636 (785)
Q Consensus       630 Y~C~a~n  636 (785)
                      |.|.+..
T Consensus        88 YyCA~~~   94 (109)
T d1bwwa_          88 YYCQQYQ   94 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeecC
Confidence            9998764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.17  E-value=6.9e-06  Score=65.06  Aligned_cols=72  Identities=15%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      +....+.+|++|+|.|.........+.|||..  .   .+         ....++.....+....|+|.++.. +|+|.|
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsa~Y   86 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEY-EDMGIY   86 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCC-cCCEEE
Confidence            45678899999999999877666678999831  1   11         011234444566778999999999 999999


Q ss_pred             EEEEEcC
Q psy2775         631 KVVATNE  637 (785)
Q Consensus       631 ~C~a~n~  637 (785)
                      .|.+...
T Consensus        87 yCa~~~~   93 (107)
T d1d5il1          87 YCLQYDE   93 (107)
T ss_dssp             EEEECSS
T ss_pred             EeeeccC
Confidence            9987653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.17  E-value=3e-06  Score=68.04  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEE---c---c------CCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEP---L---Q------ETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~---~---~------~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +...|..+.+.+|++|+|.|...+.....+.||+.  +..   +   .      ...+.....+...  ...+|+|.+++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~   80 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSA--KHLSLHIVPSQ   80 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTT--TEEEEEESSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccC--CEEEEEECCCc
Confidence            45678889999999999999987665567899983  211   1   0      1122333222222  23679999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          81 PGDSAVYFCAAME   93 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccccEEEEeeccC
Confidence            9999999998874

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=3.9e-06  Score=66.94  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=52.4

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE-----Ec---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-----PL---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      ++..|..+.+.+|++|+|.|...+.....+.||+...     .|         ....++.....+.    ...|+|.+++
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~----~~~L~I~~l~   81 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGT----DYTFTISSLQ   81 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT----EEEEEESSCC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCC----EeEEEEeece
Confidence            3566889999999999999998765556789998421     11         1112333322221    2469999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          82 PEDIATYYCQQYQ   94 (109)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             eCcCceEEEeecC
Confidence            9999999998754

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.16  E-value=3.3e-06  Score=66.60  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=50.9

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCC--EE---e---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---L---------LSSPKKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~---i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      .+.+.+|++|+|.|...+.....+.|||..  ..   +         ....+.....+.....|.|.++.. +|+|.|.|
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~YyC   85 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQA-EDEADYYC   85 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCG-GGCEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcch-hHCceEEe
Confidence            567899999999999876555679999831  11   0         012233444556678999999999 99999999


Q ss_pred             EEEcC
Q psy2775         633 VATNE  637 (785)
Q Consensus       633 ~a~n~  637 (785)
                      .+.+.
T Consensus        86 A~~~~   90 (103)
T d8faba1          86 QAWDN   90 (103)
T ss_dssp             EEEET
T ss_pred             eecCC
Confidence            87654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=1.3e-06  Score=69.30  Aligned_cols=75  Identities=16%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +++.|..+.+.+|++|+|+|..+......+.||+..  ..   |         ....++.....+    ....|+|.+++
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~----~~~~L~I~~~~   79 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSG----TDYSLTISNLE   79 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEET----TEEEEECSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccC----CEEEEEEeEee
Confidence            456788999999999999999866556679999742  11   1         011122211111    12569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          80 PEDIATYFCQHHI   92 (107)
T ss_dssp             SCCCSEEEEEECS
T ss_pred             ecCCCcEEeeeCC
Confidence            9999999997653

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.16  E-value=2.5e-06  Score=68.80  Aligned_cols=75  Identities=17%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E--Ee----c------CCCCeeEE--eeCCeEEEEEccCCCCCCc
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K--PL----L------SSPKKREI--FDGENIILELKEADSETDA  627 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~--~i----~------~~~~~~~~--~~~~~~~L~i~~~~~~~d~  627 (785)
                      .+..+.+.+|+.|+|.|...+.....+.|||..  .  ..    .      ...+....  .......|+|.++.. +|+
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~Ds   84 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP-GDS   84 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG-GGC
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC-CCC
Confidence            345678899999999999987766689999822  1  10    0      01122211  134567899999999 999


Q ss_pred             eeEEEEEEcCCc
Q psy2775         628 GDYKVVATNELG  639 (785)
Q Consensus       628 G~Y~C~a~n~~g  639 (785)
                      |.|.|.+....+
T Consensus        85 g~YyCa~~~~~~   96 (113)
T d2bnqd1          85 ATYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEEESSS
T ss_pred             cEEeEeEecCCC
Confidence            999999985543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=1.6e-06  Score=71.11  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=52.1

Q ss_pred             eeeeeeeeeecCeEEEEEEEecC----CCCceEEEeCCE------Ee---------c-CC----CCeeEEe--eCCeEEE
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKAS----PAPSIVWFRNNK------PL---------L-SS----PKKREIF--DGENIIL  616 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~----P~p~v~W~~~~~------~i---------~-~~----~~~~~~~--~~~~~~L  616 (785)
                      ..+.++.+..|++++|.|.....    ....+.|+|...      .+         . ..    .|.....  ..+..+|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            34557789999999999997632    223799987221      01         0 01    1111111  1234679


Q ss_pred             EEccCCCCCCceeEEEEEEcCCcce--EEEEEEEE
Q psy2775         617 ELKEADSETDAGDYKVVATNELGSA--THGARVTV  649 (785)
Q Consensus       617 ~i~~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V  649 (785)
                      +|.+++. +|+|.|.|.+.+..+..  .....|.|
T Consensus        84 ~I~~v~~-~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          84 VIHNLDY-SDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             EECSCCG-GGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             EECCCCh-HHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999 99999999999865433  33344444

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.15  E-value=2.7e-06  Score=67.79  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECC--E---Ec---------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNG--E---PL---------QETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      +++.|..+.+.+|++|+|.|..... ....+.||+..  .   .|         ....++......+    ...|+|.++
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~----~~~L~I~~~   79 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGT----DFTLTISRL   79 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETT----EEEEEESSC
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCC----EEEEEehHh
Confidence            4577899999999999999997543 23468999842  1   11         1112333332221    256999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy2775          80 KKREEGVYTVVAKN   93 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~   93 (785)
                      +.+|+|.|.|.+..
T Consensus        80 ~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          80 EPEDFAVYYCQQYG   93 (108)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             eecccEEEeeecCC
Confidence            99999999998753

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.15  E-value=2.1e-06  Score=69.63  Aligned_cols=78  Identities=14%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             eeecCCceEecCCCeEEEEEEEEe-cCCCeeEEEECC--EE---c------c----CCCCEEEeecCCccceEEEEEEcc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNG--EP---L------Q----ETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~--~~---~------~----~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      +.+.|..+.+.+|++|+|.|.... .....+.||+..  ..   +      .    ...+..+..+...  ....|+|.+
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~   79 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPK--SSIGLIITA   79 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGG--TEEEEEECS
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccC--CEEEEEECC
Confidence            466788999999999999999753 344568999832  11   1      0    0123333332222  235699999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy2775          79 IKKREEGVYTVVAKNR   94 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~   94 (785)
                      ++.+|+|.|.|.+...
T Consensus        80 ~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          80 TQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CCccccccccceeecC
Confidence            9999999999998743

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.14  E-value=2.5e-06  Score=67.35  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             CCceEecCCCeEEEEEEEEecCCCeeEEEECC--EEc------------cCCCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPL------------QETDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      |..+.+.+|++|+|.|.........+.||+..  ...            ....+.......    ....|+|.+++.+|+
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~~~Ds   80 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG----TTVTLTISGVQAEDE   80 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEETTCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC----CccCceEcCcchhHC
Confidence            44799999999999999755444568999842  110            011222222222    125699999999999


Q ss_pred             eEEEEEEEcC
Q psy2775          85 GVYTVVAKNR   94 (785)
Q Consensus        85 G~Y~C~a~~~   94 (785)
                      |.|.|.+...
T Consensus        81 a~YyCA~~~~   90 (103)
T d8faba1          81 ADYYCQAWDN   90 (103)
T ss_dssp             EEEEEEEEET
T ss_pred             ceEEeeecCC
Confidence            9999987643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=2.9e-06  Score=68.47  Aligned_cols=75  Identities=20%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E---Ecc---------CCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E---PLQ---------ETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~---~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      ++..|..+.+.+|++++|+|..++.-...+.||+..  .   .+.         ...++.....+    ....|+|.+++
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~----~~~~L~I~~~~   79 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG----TDYTLTISSLQ   79 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB----TEEEEEECSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCC----CEEEEEcccCc
Confidence            345688999999999999999765444578999842  1   111         11222222211    12569999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        80 ~~DsavYyCa~~~   92 (119)
T d1f3rb2          80 PEDVATYFCYQYN   92 (119)
T ss_dssp             GGGCSEEEEEEES
T ss_pred             cCCCeEEEeeccC
Confidence            9999999998764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.14  E-value=1.8e-06  Score=69.43  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=52.0

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---cC------CCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---QE------TDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---~~------~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +...|..+.+.+|++|+|+|.........+.||+..  ..   +   ..      ..+.........  ...+|+|.+++
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~   79 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKRE--KKLSLHIADSQ   79 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGG--GEEEEEESSCC
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCC--CeeEeEeccCC
Confidence            345688899999999999999865444568999842  11   1   00      112222222221  23579999999


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          80 PGDSATYFCAASA   92 (110)
T ss_dssp             TTSCSEEEECCEE
T ss_pred             CCCceeEeeeecC
Confidence            9999999998763

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.13  E-value=4.4e-06  Score=66.52  Aligned_cols=72  Identities=11%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             eeeeeeeecCeEEEEEEEecC-CCCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         565 FEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      +....+.+|++++|.|...+. ....+.|||..  .   .|         ...+++.....+..+.|+|.++.. +|+|.
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~-~Dsa~   86 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEP-EDFAV   86 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG-GGCSE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHhee-cccEE
Confidence            456679999999999998654 34468999832  1   11         112234444556778999999999 99999


Q ss_pred             EEEEEEcC
Q psy2775         630 YKVVATNE  637 (785)
Q Consensus       630 Y~C~a~n~  637 (785)
                      |.|.+.+.
T Consensus        87 YyCa~~~~   94 (108)
T d2fx7l1          87 YYCQQYGQ   94 (108)
T ss_dssp             EEEEECSS
T ss_pred             EeeecCCC
Confidence            99987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.13  E-value=1.1e-05  Score=64.27  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=51.4

Q ss_pred             eeeeeeeecCeEEEEEEEecC-CC---CceEEEeC--CEE---e---------cCCCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKAS-PA---PSIVWFRN--NKP---L---------LSSPKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~-P~---p~v~W~~~--~~~---i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                      +..+.+.+|++|+|.|.+.+. ..   ..+.|||.  |..   +         ....++.....+..+.|+|.+++. +|
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~-~D   86 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE-ED   86 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc-cC
Confidence            456789999999999988643 22   24899983  211   0         112345555566778999999999 99


Q ss_pred             ceeEEEEEEcC
Q psy2775         627 AGDYKVVATNE  637 (785)
Q Consensus       627 ~G~Y~C~a~n~  637 (785)
                      +|.|.|.+...
T Consensus        87 sA~YyCa~~~~   97 (111)
T d2gsia1          87 AATYYCSHIRE   97 (111)
T ss_dssp             CEEEEEEECSS
T ss_pred             CceEEEEECCC
Confidence            99999987654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.12  E-value=3.8e-06  Score=67.17  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=48.3

Q ss_pred             eeeeeecCeEEEEEEEecC-CCCceEEEeC--CEE---e---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeEE
Q psy2775         567 EKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--NKP---L---------LSSPKKREIFDGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~--~~~---i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      .+.+.+|++++|.|...+. ....+.|||.  |..   |         ....+.....++....|+|.+++. +|+|.|.
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa~Yy   85 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATL-RDTAVYY   85 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCG-GGCEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhccccc-CCceEEE
Confidence            5688999999999997654 3446899983  211   1         001112222234567899999999 9999999


Q ss_pred             EEEEcC
Q psy2775         632 VVATNE  637 (785)
Q Consensus       632 C~a~n~  637 (785)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            998643

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.5e-06  Score=69.41  Aligned_cols=86  Identities=13%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             eeeeeeeeecCeEEEEEEEecC---CCCceEEEeCCEE-----e---------cCCCCeeEEe--eCCeEEEEEccCCCC
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKP-----L---------LSSPKKREIF--DGENIILELKEADSE  624 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~---P~p~v~W~~~~~~-----i---------~~~~~~~~~~--~~~~~~L~i~~~~~~  624 (785)
                      .++.+.+.+|++|+|.|...+.   ....+.|+|....     +         ....+..+..  .....+|+|.+++. 
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~-   83 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ-   83 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc-
Confidence            4457788999999999997543   2235789884311     1         0012222222  34557899999999 


Q ss_pred             CCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775         625 TDAGDYKVVATNELGSATHGARVTVD  650 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~g~~~~~~~l~V~  650 (785)
                      +|+|.|.|.+............|.|.
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEE
Confidence            99999999987554333444555554

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=2.6e-06  Score=67.57  Aligned_cols=72  Identities=7%  Similarity=0.084  Sum_probs=52.7

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE------------ecCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP------------LLSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~------------i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+....+.+|++|+|.|.........+.|||..  +.            .....++.....+....|+|.+++. +|+|.
T Consensus         7 sP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~   85 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEP-EDIAT   85 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCS-CCCSE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeee-cCCCc
Confidence            345678899999999999887777779999832  11            0112234444456678999999999 99999


Q ss_pred             EEEEEEc
Q psy2775         630 YKVVATN  636 (785)
Q Consensus       630 Y~C~a~n  636 (785)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d3cx5k1          86 YFCQHHI   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEeeeCC
Confidence            9997643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=6e-06  Score=65.55  Aligned_cols=71  Identities=13%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CE---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK---PL---------LSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+..+.+.+|++++|.|.........+.|||.  ++   .+         ....++.....+....|+|.++.. +|+|.
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~DSa~   85 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLP-EDFGS   85 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccc-cCCee
Confidence            34567889999999999987666667999982  11   11         011234444566778999999999 99999


Q ss_pred             EEEEEE
Q psy2775         630 YKVVAT  635 (785)
Q Consensus       630 Y~C~a~  635 (785)
                      |.|.+.
T Consensus        86 YyCA~~   91 (109)
T d1mqkl_          86 YYCQHH   91 (109)
T ss_dssp             EEEEEC
T ss_pred             EEEeee
Confidence            999876

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.10  E-value=4.6e-06  Score=64.73  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=56.0

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .||.+..-|.. .+..|+.++|.|.+.|+ | ...++|++||..+..+...  .....++.....+.|.+..   ++.+.
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~---~~~~~   77 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP---SDDDI   77 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC---CTTCC
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC---CCCCE
Confidence            47777665433 35678999999999997 3 3789999999887643211  1223444555566777654   56778


Q ss_pred             EEEEEEcCC
Q psy2775          87 YTVVAKNRE   95 (785)
Q Consensus        87 Y~C~a~~~~   95 (785)
                      |+|+|.+..
T Consensus        78 ytC~V~H~s   86 (100)
T d1muja1          78 YDCKVEHWG   86 (100)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999999865

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=1e-05  Score=64.98  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=51.8

Q ss_pred             eeeeeeeeecCeEEEEEEEecC-CCCceEEEeC--CE-E--e----------cCCCCeeEEee--CCeEEEEEccCCCCC
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--NK-P--L----------LSSPKKREIFD--GENIILELKEADSET  625 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~--~~-~--i----------~~~~~~~~~~~--~~~~~L~i~~~~~~~  625 (785)
                      .+..+.+.+|++|+|.|.+.+. ....+.|||.  |. +  +          ....++.+...  +....|.|.++.. +
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~-~   83 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR-N   83 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG-G
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc-C
Confidence            4456789999999999998654 3446899982  21 1  1          12234444332  3457899999999 9


Q ss_pred             CceeEEEEEEcCC
Q psy2775         626 DAGDYKVVATNEL  638 (785)
Q Consensus       626 d~G~Y~C~a~n~~  638 (785)
                      |+|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          84 DSGIYLCGAISLH   96 (114)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             CCeEEEEEEEeCC
Confidence            9999999987543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.8e-05  Score=60.88  Aligned_cols=73  Identities=18%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             cCCCeEEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEee-cCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          25 EENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSD-QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        25 ~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      ..|+.++|.|.+.| .|.+.|.|++++..+.......... .++.+...+.|++..   .+...|+|.+.+.......
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~~   88 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVNQ   88 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCcE
Confidence            36888999999987 5889999999998886554333332 345566667788753   4567999999988765443

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.08  E-value=4.1e-06  Score=67.64  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee---------cCCCCeeEEe--eCCeEEEEEccCCCCCCce
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIF--DGENIILELKEADSETDAG  628 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i---------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G  628 (785)
                      +..+.+.+|+.++|.|.........+.|||..  .   -+         ....++....  ......|.|.+++. +|+|
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsg   86 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL-SDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG-GGCE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc-ccCc
Confidence            44668999999999999987777789999832  1   11         0011222221  22356799999999 9999


Q ss_pred             eEEEEEEcC
Q psy2775         629 DYKVVATNE  637 (785)
Q Consensus       629 ~Y~C~a~n~  637 (785)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999987654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=3.9e-06  Score=67.09  Aligned_cols=73  Identities=12%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             CCceEecCCCeEEEEEEEEec-CCCeeEEEECC--EE---c-c------CCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          19 TKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNG--EP---L-Q------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~--~~---~-~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      |..+.+.+|++|+|.|..++. ....+.||+..  ..   | .      ...+..+......  ....|+|.+++.+|+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDR--KSSTLILPHATLRDTA   82 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTC--SEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccC--CeeeehhcccccCCce
Confidence            557999999999999997543 33468999842  11   1 0      0111222222222  2366999999999999


Q ss_pred             EEEEEEEc
Q psy2775          86 VYTVVAKN   93 (785)
Q Consensus        86 ~Y~C~a~~   93 (785)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (110)
T d2esvd1          83 VYYCIVVR   90 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            99998864

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.07  E-value=1.6e-05  Score=63.38  Aligned_cols=72  Identities=13%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             eeeeeeeecCeEEEEEEEecCC-----CCceEEEeCC--EE---e---------cCCCCeeEEeeCCeEEEEEccCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASP-----APSIVWFRNN--KP---L---------LSSPKKREIFDGENIILELKEADSET  625 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P-----~p~v~W~~~~--~~---i---------~~~~~~~~~~~~~~~~L~i~~~~~~~  625 (785)
                      +....+.+|++|+|.|.+.+..     ..-+.||+..  ..   |         ...+++.....+....|.|.++.. +
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~-e   86 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA-E   86 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-G
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc-C
Confidence            4567899999999999976533     2358999831  11   1         112334444556778999999999 9


Q ss_pred             CceeEEEEEEcC
Q psy2775         626 DAGDYKVVATNE  637 (785)
Q Consensus       626 d~G~Y~C~a~n~  637 (785)
                      |+|.|.|...+.
T Consensus        87 DsAvYYC~~~~~   98 (112)
T d1ncwl1          87 DLGVYYCWQGTH   98 (112)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCEeEEEEcCCC
Confidence            999999966443

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.06  E-value=8.3e-06  Score=65.01  Aligned_cols=76  Identities=8%  Similarity=0.119  Sum_probs=51.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-CC---CeeEEEECC--EE----c--------cCCCCEEEeecCCccceEEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-PE---PDLLWYYNG--EP----L--------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~---~~i~W~~~~--~~----~--------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +++.|..+.+.+|++|+|+|+.++. ..   ..+.||+..  ..    +        ....++.....+    ....|+|
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~----~~~~L~I   79 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG----TDFTLNI   79 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET----TEEEEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC----Cchhccc
Confidence            4567889999999999999987542 11   248999842  11    1        011233333222    1256999


Q ss_pred             cccCCCCCeEEEEEEEcC
Q psy2775          77 KSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~   94 (785)
                      .+++.+|+|.|.|.+...
T Consensus        80 ~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          80 HPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             SSCCGGGCEEEEEEECSS
T ss_pred             ccccccCCceEEEEECCC
Confidence            999999999999986543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.06  E-value=7.4e-06  Score=65.43  Aligned_cols=75  Identities=15%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec----CCCeeEEEEC--CEE---c---------cCCCCEEEeecCCccceEEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV----PEPDLLWYYN--GEP---L---------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~----p~~~i~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +++.|..+.+.+|++|+|.|..+..    ....+.||+.  ++.   |         ....+......+    ....|+|
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~----~~~~L~I   79 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR----TDFTLII   79 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS----SEEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCC----CEEEEEE
Confidence            3566889999999999999987432    1234899984  221   1         011233222221    2357999


Q ss_pred             cccCCCCCeEEEEEEEc
Q psy2775          77 KSIKKREEGVYTVVAKN   93 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~   93 (785)
                      .+++.+|+|.|.|.+.+
T Consensus        80 ~~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          80 DPVEADDVATYYCQQTN   96 (111)
T ss_dssp             SSCCGGGCEEEEEEECS
T ss_pred             cccccccCccEEEeecC
Confidence            99999999999998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=6e-06  Score=66.51  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=52.8

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecC-CCCceEEEeCC----E-Ee---------------cCCCCeeEEeeCCeEEEEEcc
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN----K-PL---------------LSSPKKREIFDGENIILELKE  620 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~----~-~i---------------~~~~~~~~~~~~~~~~L~i~~  620 (785)
                      ...+...++.+|++|+|.|.+.+. ....+.|||..    . .+               ....++.....+....|+|.+
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~   83 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSD   83 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESS
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEcc
Confidence            344557789999999999998764 34569999922    1 01               001233444556678899999


Q ss_pred             CCCCCCceeEEEEEEc
Q psy2775         621 ADSETDAGDYKVVATN  636 (785)
Q Consensus       621 ~~~~~d~G~Y~C~a~n  636 (785)
                      ++. +|+|.|.|.+..
T Consensus        84 l~~-~Dsg~YyCa~~~   98 (114)
T d1akjd_          84 FRR-ENEGYYFCSALS   98 (114)
T ss_dssp             CCG-GGCEEEEEEEEE
T ss_pred             CCC-CCCEEEeEeEcC
Confidence            999 999999999874

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.05  E-value=1.4e-05  Score=63.63  Aligned_cols=73  Identities=12%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             eeeeeeeecCeEEEEEEEecC--CCCceEEEeC------CEEecCCCCeeEEee--CCeEEEEEccCCCCCCceeEEEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKAS--PAPSIVWFRN------NKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~------~~~i~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +....+.+|++++|.|...+.  ....+.|||.      ...+..+.++....+  ...+.|+|.+++. +|+|.|.|.+
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~-~Dsa~YyCA~   84 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTV-EDGGTYRCGL   84 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcC-ccCEEEeEEE
Confidence            446678899999999998653  4568999982      122333344444333  2457899999999 9999999987


Q ss_pred             EcCC
Q psy2775         635 TNEL  638 (785)
Q Consensus       635 ~n~~  638 (785)
                      ....
T Consensus        85 ~~~~   88 (112)
T d1sq2n_          85 GVAG   88 (112)
T ss_dssp             CBTT
T ss_pred             ecCC
Confidence            6543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.05  E-value=1e-05  Score=65.55  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=54.6

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecC--CCeeEEEEC--CEE---c---------cCCCCEEEeecCCccceEEEEEEc
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYN--GEP---L---------QETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .+...+..+.+.+|++++|.|...+..  ...+.||+.  ++.   |         ...+++....+...  ....|+|.
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~--~~~~L~i~   80 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAK--NLAVLKIL   80 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGG--TEEEEEES
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccc--cceecccc
Confidence            356678889999999999999997543  356899973  211   1         11134444333222  23679999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy2775          78 SIKKREEGVYTVVAKNR   94 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~   94 (785)
                      +++.+|+|.|.|.....
T Consensus        81 ~~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          81 APSERDEGSYYCACDTL   97 (120)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             cccccCCceeecCcccC
Confidence            99999999999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=4.4e-06  Score=68.32  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEec---C---CCeeEEEECCEE----c-----------cCCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAV---P---EPDLLWYYNGEP----L-----------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~---p---~~~i~W~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ..|..+.+.+|++|+|.|.+...   +   ...+.|++....    +           ....+..+..+..  ....+|+
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL~   82 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMD--HKVCNLL   82 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGG--GTBCCEE
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCc--CCEEEEE
Confidence            34778999999999999998531   1   134567774321    1           1123444433222  2235599


Q ss_pred             EcccCCCCCeEEEEEEEcCC
Q psy2775          76 IKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      |.+++.+|+|.|.|.+....
T Consensus        83 I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          83 LKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             ECSCCGGGCEEEEEEEECC-
T ss_pred             ECCCChhHCEEEEEEEEeCC
Confidence            99999999999999997654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=1.1e-05  Score=63.82  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCC---CeeEEEEC---CEE--c---------cCCCCEEEeecCCccceEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPE---PDLLWYYN---GEP--L---------QETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~---~~i~W~~~---~~~--~---------~~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+..+| .+.+.+|++|+|.|..++...   ..+.||+.   ..+  |         ...+++.....+.    ...|+|
T Consensus         3 ~~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~----~~~L~I   77 (110)
T d1oaql_           3 VVTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGN----KAALTI   77 (110)
T ss_dssp             CEEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETT----EEEEEE
T ss_pred             CEeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccccc----ceeeec
Confidence            445544 688999999999999864322   23889973   222  1         1123444433221    256999


Q ss_pred             cccCCCCCeEEEEEEEcC
Q psy2775          77 KSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~   94 (785)
                      .+++.+|+|.|.|.+...
T Consensus        78 ~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          78 TGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             ESCCGGGCEEEEEEEEET
T ss_pred             CCCCccccEeEEEEcccC
Confidence            999999999999997653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.04  E-value=1e-05  Score=64.52  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=50.0

Q ss_pred             eeeeeeeecCeEEEEEEEecC----CCCceEEEeC--CEE---e---------cCCCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKAS----PAPSIVWFRN--NKP---L---------LSSPKKREIFDGENIILELKEADSETD  626 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~----P~p~v~W~~~--~~~---i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d  626 (785)
                      +....+.+|++|+|.|.....    -...+.|||.  |+.   |         ....+.....++....|.|.++.. +|
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   86 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA-DD   86 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG-GG
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc-cc
Confidence            456678999999999987542    1224999983  221   1         111233344456678999999999 99


Q ss_pred             ceeEEEEEEcC
Q psy2775         627 AGDYKVVATNE  637 (785)
Q Consensus       627 ~G~Y~C~a~n~  637 (785)
                      +|.|.|.+.+.
T Consensus        87 sa~YyCa~~~~   97 (111)
T d1j05a_          87 VATYYCQQTNE   97 (111)
T ss_dssp             CEEEEEEECSS
T ss_pred             CccEEEeecCC
Confidence            99999987654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.04  E-value=1.1e-05  Score=64.53  Aligned_cols=74  Identities=16%  Similarity=0.279  Sum_probs=50.1

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-----CCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-----PEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-----p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +++.|..+.+.+|++|+|.|..++.     ....+.||+..  ..   +         ....+......+    ....|+
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~----~~~~L~   79 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG----TAFTLR   79 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS----SEEEEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC----CEEEEE
Confidence            4566888999999999999998653     13468999742  11   1         111233332222    125699


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|+|.|.|...
T Consensus        80 Is~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          80 ISRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             ECCccccCCceEEEEeC
Confidence            99999999999999643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=1.5e-05  Score=60.56  Aligned_cols=79  Identities=14%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ||.+.....   ...+..++|.|.+.|+ |. ..|+|++||..+...........++.+...+.|++..   +|...|+|
T Consensus         3 PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~---~~~~~ytC   76 (91)
T d3frua1           3 PPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKR---GDEHHYQC   76 (91)
T ss_dssp             CCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEET---TCGGGEEE
T ss_pred             CCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECC---CCCCEEEE
Confidence            566654211   1245689999999997 44 6899999999876554334445555666667787753   46678999


Q ss_pred             EEEcCCe
Q psy2775          90 VAKNREG   96 (785)
Q Consensus        90 ~a~~~~~   96 (785)
                      ++.+...
T Consensus        77 ~V~H~sL   83 (91)
T d3frua1          77 QVEHEGL   83 (91)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9998653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.03  E-value=7.7e-06  Score=65.42  Aligned_cols=72  Identities=17%  Similarity=0.188  Sum_probs=49.2

Q ss_pred             CCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccCCC
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      |..+.+.+|++++|.|..++..  ...+.||+..  ..   |         ...+++....++.    ..+|+|.+++.+
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~----~~~L~I~~~~~~   82 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGT----SATLGITGLQTG   82 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETT----EEEEEESSCCGG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCC----EeeeEEeeeccc
Confidence            4479999999999999975432  3458999741  11   1         1123343333222    256999999999


Q ss_pred             CCeEEEEEEEcC
Q psy2775          83 EEGVYTVVAKNR   94 (785)
Q Consensus        83 D~G~Y~C~a~~~   94 (785)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (111)
T d1rzfl1          83 DEADYYCGTWDS   94 (111)
T ss_dssp             GCSEEEEEEEET
T ss_pred             cCcceEEeecCC
Confidence            999999988643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.03  E-value=1.7e-05  Score=63.90  Aligned_cols=75  Identities=13%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             eeeeeeeeecCeEEEEEEEecC-CCCceEEEeC--CE-E--ec------------CCCCeeEEee--CCeEEEEEccCCC
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--NK-P--LL------------SSPKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~--~~-~--i~------------~~~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      .+....+.+|++|+|.|...+. ....+.|||.  |. +  |.            ...++....+  ...++|+|.+++.
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            3446689999999999998654 5568999982  21 1  10            1123333322  3447899999999


Q ss_pred             CCCceeEEEEEEcCCc
Q psy2775         624 ETDAGDYKVVATNELG  639 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~~g  639 (785)
                       +|+|.|.|.+....+
T Consensus        86 -~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          86 -EDSATYYCAFTLPPP  100 (116)
T ss_dssp             -GGCEEEEEEEECTTT
T ss_pred             -cccccceeeEecCCC
Confidence             999999999876544

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.03  E-value=1.2e-05  Score=64.34  Aligned_cols=75  Identities=13%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC-----CCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP-----EPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +++.|..+.+.+|++|+|.|..++..     ...+.||+..  +.   +         ....++.....+    ....|+
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~----~~~~L~   80 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG----TDFTLK   80 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECS----SEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccC----CcccCc
Confidence            56678899999999999999985432     2468999742  11   1         112233332222    125699


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|+|.|.|...+
T Consensus        81 I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          81 ISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             cCCCCcccCEEEEEEECC
Confidence            999999999999996553

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.02  E-value=1e-05  Score=64.92  Aligned_cols=78  Identities=13%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E-E--c-c--C-----CCCEEEeecCCccceEEEEEEcccCC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E-P--L-Q--E-----TDEVVFSDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~-~--~-~--~-----~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (785)
                      +...|..+.+.+|++|+|.|..++ ....+.||+..  . +  | .  .     .........  .....+.|+|.+++.
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~~   80 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS--ERARYSTLHIRDAQL   80 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCS--SSSSEEEEEECSCCG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEee--cCCceeEEEECCCCH
Confidence            456788999999999999999864 34578999832  1 1  0 0  0     001111111  112335799999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy2775          82 REEGVYTVVAKNRE   95 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~   95 (785)
                      +|+|.|.|.+....
T Consensus        81 ~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          81 EDSGTYFCAAEASS   94 (113)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             hHCEEEEEEecCCC
Confidence            99999999987543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.02  E-value=4.9e-06  Score=67.23  Aligned_cols=71  Identities=20%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeC--CE---Eec---CCC-------CeeE--EeeCCeEEEEEccCCCCCCce
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK---PLL---SSP-------KKRE--IFDGENIILELKEADSETDAG  628 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~---~i~---~~~-------~~~~--~~~~~~~~L~i~~~~~~~d~G  628 (785)
                      ....+.+|++++|.|.........+.|||.  |.   .+.   ...       +...  ...+..+.|+|.+++. +|+|
T Consensus         8 ~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsg   86 (115)
T d1i9ea_           8 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW-SDSA   86 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG-GGCE
T ss_pred             CeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc-cccc
Confidence            456899999999999988766678899982  21   110   000       0111  1123446899999999 9999


Q ss_pred             eEEEEEEcC
Q psy2775         629 DYKVVATNE  637 (785)
Q Consensus       629 ~Y~C~a~n~  637 (785)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1i9ea_          87 VYFCAVSGF   95 (115)
T ss_dssp             EEEEEEEET
T ss_pred             eecccccCC
Confidence            999987643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.02  E-value=1e-05  Score=64.87  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecC---CCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p---~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      .|..+.+.+|++|+|.|..++..   ...+.||+..  ..   +         ....++.......    ...|+|.+++
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~L~I~~l~   81 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGN----SASLTISGLQ   81 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETT----EEEEEECSCC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCC----EeeEEeCcCc
Confidence            37789999999999999986532   2358999842  11   1         1112333322221    2569999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy2775          81 KREEGVYTVVAKNRE   95 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~   95 (785)
                      .+|+|.|.|.+.+..
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          82 AEDEADYYCSSYDGS   96 (112)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cccCEEEEEeeecCC
Confidence            999999999887543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.6e-06  Score=63.37  Aligned_cols=75  Identities=17%  Similarity=0.190  Sum_probs=55.2

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK  188 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  188 (785)
                      ..|.+...+. ..+..|++|+|.|.........+.|+|+|....... ........+.|.+++.+|+|+|+|.....
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~-~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH-QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE-EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE-cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            5677776654 468899999999986333445799999996543322 22344568999999999999999988654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.02  E-value=9.7e-06  Score=64.90  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EEc------------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EPL------------QETDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      +..|..+.+.+|++|+|.|..++..  ...+.|++..  ..+            ...++.....+....  ...|+|.++
T Consensus         4 ltQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~l   81 (111)
T d1cd0a_           4 LNQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSN--SASLTISGL   81 (111)
T ss_dssp             EECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTT--EEEEEECSC
T ss_pred             EecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCC--ccccccccC
Confidence            3446789999999999999986542  2358999842  111            112344444333222  356999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy2775          80 KKREEGVYTVVAKNR   94 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~   94 (785)
                      +.+|+|.|.|.+...
T Consensus        82 ~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          82 KTEDEADYYCQSYDA   96 (111)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CcccCcEEEEeeccC
Confidence            999999999987643

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.9e-06  Score=67.53  Aligned_cols=69  Identities=17%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             ceEecCCCeEEEEEEEEecCC----CeeEEEECCEEccC------------CCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          21 PVYAEENSEVTLEVRLVAVPE----PDLLWYYNGEPLQE------------TDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      .+++..|++++|.|.......    ..+.|.+++..+..            ..+..+...++     .+|+|.+++.+|+
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~-----~sL~I~~v~~~D~   77 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN-----LSIVILALRPSDE   77 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT-----TEEEECSCCGGGC
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCc-----EEEEECcCChHHC
Confidence            467889999999998753222    46788888765411            12344433332     3599999999999


Q ss_pred             eEEEEEEEcC
Q psy2775          85 GVYTVVAKNR   94 (785)
Q Consensus        85 G~Y~C~a~~~   94 (785)
                      |.|.|.+.+.
T Consensus        78 G~Y~C~V~~~   87 (105)
T d1dr9a1          78 GTYECVVLKY   87 (105)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEEeC
Confidence            9999999754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=9.6e-06  Score=62.99  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=46.6

Q ss_pred             eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEee-CCeE-EEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFD-GENI-ILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~-~~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      +..|+.++|.|.+.|+ |.. .|+|++||+++..........+ ++.+ ......+.. ++.+.|+|.+.....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTP-TEKDEYACRVNHVTL   88 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECC-CSSCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECC-CCCCEEEEEEEeCCC
Confidence            4578999999999997 655 8999999999854332222222 2222 223333445 677889999998754

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.01  E-value=9.2e-06  Score=65.54  Aligned_cols=75  Identities=13%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             eeeeeeeeecCeEEEEEEEecC-CCCceEEEeC--CEE---ec---CC-------CCeeEE--eeCCeEEEEEccCCCCC
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--NKP---LL---SS-------PKKREI--FDGENIILELKEADSET  625 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~--~~~---i~---~~-------~~~~~~--~~~~~~~L~i~~~~~~~  625 (785)
                      .+..+.+.+|++|+|.|..... ....+.|||.  +..   +.   ..       .+....  ..+..+.|+|.++.. +
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~   84 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV-V   84 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG-G
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc-c
Confidence            3456789999999999987643 3446899982  211   10   00       111121  134467899999999 9


Q ss_pred             CceeEEEEEEcCCc
Q psy2775         626 DAGDYKVVATNELG  639 (785)
Q Consensus       626 d~G~Y~C~a~n~~g  639 (785)
                      |+|.|.|.+....+
T Consensus        85 Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          85 DSAVYFCALSGFYN   98 (114)
T ss_dssp             GCEEEEEEEECSBT
T ss_pred             cCCCceEeCCCCCC
Confidence            99999998876644

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.01  E-value=5.7e-06  Score=66.13  Aligned_cols=78  Identities=18%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c----c-----CCCCEEEeecCCccceEEEEEEcccC
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L----Q-----ETDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~----~-----~~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      +.+.|..+.+.+|++|+|.|.........+.||+..  +.   |    .     ...++..........  ..|+|.+++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~--~~L~i~~~~   80 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATS--FHLQKASVQ   80 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTB--CCEEEEEEC
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCE--EeeeecCcC
Confidence            567788999999999999999866555579999842  11   1    0     011222222222222  459999999


Q ss_pred             CCCCeEEEEEEEcC
Q psy2775          81 KREEGVYTVVAKNR   94 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~   94 (785)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          81 ESDSAVYYCALSGG   94 (110)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             cCCCcccceeecCC
Confidence            99999999988654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.01  E-value=7.7e-06  Score=63.13  Aligned_cols=66  Identities=9%  Similarity=0.194  Sum_probs=44.5

Q ss_pred             CCeEEEEEEEEecCCCeeEEEECCE--E---c--------cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          27 NSEVTLEVRLVAVPEPDLLWYYNGE--P---L--------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        27 G~~v~l~C~~~g~p~~~i~W~~~~~--~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      |++|+|.|.........+.||+...  .   |        ....++.........  ..+|+|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~--~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQ--YVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTT--EEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCC--EEeEEeeccccCcCccceeeEec
Confidence            8999999998766667899998321  1   1        111233332222222  25699999999999999999874


Q ss_pred             C
Q psy2775          94 R   94 (785)
Q Consensus        94 ~   94 (785)
                      .
T Consensus        79 ~   79 (94)
T d2gj6d1          79 D   79 (94)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.01  E-value=1.8e-05  Score=63.22  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=49.1

Q ss_pred             eeeeeeeecCeEEEEEEEecCC-----CCceEEEeCC--EE---e---------cCCCCeeEEeeCCeEEEEEccCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASP-----APSIVWFRNN--KP---L---------LSSPKKREIFDGENIILELKEADSET  625 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P-----~p~v~W~~~~--~~---i---------~~~~~~~~~~~~~~~~L~i~~~~~~~  625 (785)
                      +..+.+.+|++|+|.|.+.+.-     ...+.||+..  ..   +         ....+......+....|+|.++.. +
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~-~   86 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA-E   86 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG-G
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc-c
Confidence            4467789999999999987642     3468999832  11   1         011233344456678999999999 9


Q ss_pred             CceeEEEEEE
Q psy2775         626 DAGDYKVVAT  635 (785)
Q Consensus       626 d~G~Y~C~a~  635 (785)
                      |++.|.|...
T Consensus        87 DsAvYyCa~~   96 (112)
T d1mjul1          87 DVGVYYCLQH   96 (112)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCceEEEEeC
Confidence            9999999543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=1.6e-05  Score=62.57  Aligned_cols=72  Identities=21%  Similarity=0.244  Sum_probs=53.4

Q ss_pred             ccCCCeEEecCCcEEEEEEEeCCCceEEEEECC--EE---c---------ccCCCEEEEEeCcEEEEEEccCCCCCcEEE
Q psy2775         420 VPLQDVKVSRDEKASFEIELTKGDALVKWYKDG--KE---I---------AFSENVTLSIDGKKQKLIIFSAGLEDAGEY  485 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  485 (785)
                      ..|..+.+.+|++++|.|........+.||+..  ..   +         ....+......+....|.|.+++.+|+|.|
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            345667788999999999976655568999831  10   0         112455566667788999999999999999


Q ss_pred             EEEEee
Q psy2775         486 SCRVGD  491 (785)
Q Consensus       486 ~C~a~n  491 (785)
                      .|.+..
T Consensus        85 yCa~~~   90 (104)
T d1yqvl1          85 YCQQWG   90 (104)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            997654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.99  E-value=9.7e-06  Score=65.02  Aligned_cols=75  Identities=13%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC-CeeEEEECC--EEc----------cCCCCEEEeecCCccceEEEEEEcccCCCC
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNG--EPL----------QETDEVVFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      ..|..+.+.+|++|+|.|...+... ..+.||+..  ..+          .......+....+.  ....|+|.+++.+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR--KSSTLILHRATLRD   80 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTS--SEEEEEESSCCGGG
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccC--CeeEEEEeeccccc
Confidence            4577899999999999999865443 458999842  211          01112233333322  23569999999999


Q ss_pred             CeEEEEEEEc
Q psy2775          84 EGVYTVVAKN   93 (785)
Q Consensus        84 ~G~Y~C~a~~   93 (785)
                      +|.|.|.+..
T Consensus        81 sa~YyCa~~~   90 (112)
T d1kgcd1          81 AAVYYCILPL   90 (112)
T ss_dssp             CEEEEEECCC
T ss_pred             ceeEeeeEec
Confidence            9999998754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.99  E-value=1.6e-05  Score=62.56  Aligned_cols=71  Identities=8%  Similarity=0.144  Sum_probs=49.9

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee-------c--CCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL-------L--SSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i-------~--~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      .+....+.+|++++|.|.... ....+.||+..  .   .+       .  ...++.....+....|.|.++.. +|+|.
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~-~Dsa~   83 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMET-EDAAT   83 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEE
T ss_pred             cCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCc-ccCCe
Confidence            345678999999999998754 34468999832  1   00       0  12233444456678999999999 99999


Q ss_pred             EEEEEEc
Q psy2775         630 YKVVATN  636 (785)
Q Consensus       630 Y~C~a~n  636 (785)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (104)
T d1yqvl1          84 YYCQQWG   90 (104)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9997643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=2.2e-05  Score=62.12  Aligned_cols=70  Identities=13%  Similarity=0.123  Sum_probs=51.1

Q ss_pred             eeeeeecCeEEEEEEEecCCCC---ceEEEe---CCEEe-----------cCCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP---SIVWFR---NNKPL-----------LSSPKKREIFDGENIILELKEADSETDAGD  629 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p---~v~W~~---~~~~i-----------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      ...+.+|++++|.|...+....   -+.|||   +..+.           ...+++.....+..+.|+|.++.. +|+|.
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~-~Dsa~   87 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQT-EDEAI   87 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG-GGCEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCc-cccEe
Confidence            5678999999999999754322   389998   22221           112344555567788999999999 99999


Q ss_pred             EEEEEEcC
Q psy2775         630 YKVVATNE  637 (785)
Q Consensus       630 Y~C~a~n~  637 (785)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (110)
T d1oaql_          88 YFCALWYS   95 (110)
T ss_dssp             EEEEEEET
T ss_pred             EEEEcccC
Confidence            99997653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.99  E-value=2.3e-05  Score=62.77  Aligned_cols=72  Identities=14%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             eeeeeeeeecCeEEEEEEEecC--CCCceEEEeC--CE----EecCCCCeeEEee--CCeEEEEEccCCCCCCceeEEEE
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS--PAPSIVWFRN--NK----PLLSSPKKREIFD--GENIILELKEADSETDAGDYKVV  633 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~--~~----~i~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~  633 (785)
                      .+....+.+|++|+|.|...+.  +...+.|||.  +.    .+....++....+  ...+.|+|.+++. +|+|.|.|.
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~YyCa   84 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRV-EDSGTYKCQ   84 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeeccccc-CCcceEeee
Confidence            3456788999999999998754  4456999982  21    2223344444332  3456899999999 999999999


Q ss_pred             EEc
Q psy2775         634 ATN  636 (785)
Q Consensus       634 a~n  636 (785)
                      +..
T Consensus        85 ~~~   87 (113)
T d1vesa_          85 AFY   87 (113)
T ss_dssp             EEE
T ss_pred             eec
Confidence            864

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.2e-05  Score=63.13  Aligned_cols=86  Identities=14%  Similarity=0.190  Sum_probs=58.5

Q ss_pred             CCeeee-cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFSK-KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +|.+.. .|....+ .++.++|.|.+.|. |. ..|.|+++|..+.....  ......++.+...+.|+|..-+......
T Consensus         5 ~P~V~l~~ps~~~~-~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           5 SPTVTLFPPSSEEL-STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             CCEEEEECCCHHHH-TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHh-CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            565544 3333333 46689999999887 33 58999999988754321  1222345556677889998777677789


Q ss_pred             EEEEEEcCCeeE
Q psy2775          87 YTVVAKNREGEA   98 (785)
Q Consensus        87 Y~C~a~~~~~~~   98 (785)
                      |+|.|.+.....
T Consensus        84 ytC~V~H~~~~~   95 (102)
T d1q0xl2          84 YSCQVTHEGHSS   95 (102)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEEECCccE
Confidence            999999876543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.98  E-value=6.8e-06  Score=65.04  Aligned_cols=73  Identities=11%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEEEcccCCCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      .|..+.+.+|++|+|.|.........+.||+..  +.   |         ....+......+    ...+|+|.+++.+|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~l~~~D   81 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG----NMATLTISRVEAGD   81 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET----TEEEEEESSCCGGG
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCC----CccceEEeeeccCC
Confidence            344689999999999999754344568999742  11   1         112233332222    12569999999999


Q ss_pred             CeEEEEEEEcC
Q psy2775          84 EGVYTVVAKNR   94 (785)
Q Consensus        84 ~G~Y~C~a~~~   94 (785)
                      +|.|.|.+...
T Consensus        82 savYyCA~~~~   92 (109)
T d1w72l1          82 EADYYCQVWDS   92 (109)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEecCC
Confidence            99999998643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.98  E-value=2.7e-05  Score=62.22  Aligned_cols=74  Identities=11%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             eeeeeeeeeecCeEEEEEEEecC-----CCCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCC
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKAS-----PAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADS  623 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~-----P~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~  623 (785)
                      ..+....+.+|++|+|.|...+.     ....+.||+..  +   .+         ....++.....+....|+|.++..
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~   86 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   86 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc
Confidence            33556789999999999998653     22469999832  1   11         112233444456678999999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|+|.|.|.+.+.
T Consensus        87 -~DsavYyCa~~~~   99 (113)
T d1n4xl_          87 -EDLGIYYCFQGSH   99 (113)
T ss_dssp             -GGCEEEEEEECSS
T ss_pred             -ccCEEEEEEECCC
Confidence             9999999976543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.98  E-value=1.3e-05  Score=62.00  Aligned_cols=80  Identities=18%  Similarity=0.106  Sum_probs=49.7

Q ss_pred             CCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCee-EEee-CCeE-EEEEccCCCCCCceeEEE
Q psy2775         558 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR-EIFD-GENI-ILELKEADSETDAGDYKV  632 (785)
Q Consensus       558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~-~~~~-~~~~-~L~i~~~~~~~d~G~Y~C  632 (785)
                      ||.+..-+. ..+..|++++|.|.+.|+ |. ..|+|++||+++..+.... ...+ ++.+ ......+.. ++.+.|+|
T Consensus         3 pP~V~v~p~-~~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~-~~~~~ytC   80 (100)
T d1muja1           3 APQATVFPK-SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP-SDDDIYDC   80 (100)
T ss_dssp             CCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC-CTTCCEEE
T ss_pred             CCEEEEEcC-CccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC-CCCCEEEE
Confidence            355543322 245678999999999997 54 4899999999886542211 1112 2222 222223344 66778999


Q ss_pred             EEEcCCc
Q psy2775         633 VATNELG  639 (785)
Q Consensus       633 ~a~n~~g  639 (785)
                      .+.+..-
T Consensus        81 ~V~H~sl   87 (100)
T d1muja1          81 KVEHWGL   87 (100)
T ss_dssp             EEECTTS
T ss_pred             EEEECCC
Confidence            9998753

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.2e-05  Score=62.54  Aligned_cols=72  Identities=10%  Similarity=0.071  Sum_probs=48.6

Q ss_pred             eeeeeeecCeEEEEEEEecCC--CCceEEEeCCE--E---e---------cCCCCeeEEe--eCCeEEEEEccCCCCCCc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASP--APSIVWFRNNK--P---L---------LSSPKKREIF--DGENIILELKEADSETDA  627 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~~--~---i---------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~  627 (785)
                      +.+.+.+|++|+|.|......  ...+.|||...  .   +         ....+.....  ..+.++|.|.+++. +|+
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~-~Ds   82 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLRE-EDS   82 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCG-GGC
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCC-CCC
Confidence            356788999999999876432  23578998321  1   1         0112222222  35668999999999 999


Q ss_pred             eeEEEEEEcCC
Q psy2775         628 GDYKVVATNEL  638 (785)
Q Consensus       628 G~Y~C~a~n~~  638 (785)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999988543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.2e-05  Score=60.42  Aligned_cols=70  Identities=13%  Similarity=0.173  Sum_probs=48.6

Q ss_pred             eecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775         571 KEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFD-GEN----IILELKEADSETDAGDYKVVATNELGSATHG  644 (785)
Q Consensus       571 ~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  644 (785)
                      ..|+.++|.|.+.| +|+|.|+|++||..+........... ++.    +.|.+.   . .+...|+|.+.+..-....+
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~-~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---M-TTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---T-TSCEEEEEEEEETTCCEEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---C-CccceEEEEEEecCCCCcEE
Confidence            45788999999997 69999999999998865433222221 222    345554   3 55678999999987655543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.97  E-value=1.3e-05  Score=64.23  Aligned_cols=71  Identities=14%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEE---ec---------CCCCeeEEe--eCCeEEEEEccCCCCCCce
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP---LL---------SSPKKREIF--DGENIILELKEADSETDAG  628 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~---i~---------~~~~~~~~~--~~~~~~L~i~~~~~~~d~G  628 (785)
                      +..+.+.+|++++|.|...+.....+.||+.  |+.   +.         ...+.....  .+...+|.|.++.. +|+|
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa   85 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP-GDSA   85 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG-GGCE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc-cccE
Confidence            3456789999999999988776677999982  211   10         012222222  24578999999999 9999


Q ss_pred             eEEEEEEc
Q psy2775         629 DYKVVATN  636 (785)
Q Consensus       629 ~Y~C~a~n  636 (785)
                      .|.|.+..
T Consensus        86 ~YyCa~~~   93 (111)
T d1bd2d1          86 VYFCAAME   93 (111)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99998874

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.97  E-value=1.8e-05  Score=63.27  Aligned_cols=73  Identities=11%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             eeeeeeeeecCeEEEEEEEecC---C---CCceEEEeC--CEE------------ecCCCCeeEEeeCCeEEEEEccCCC
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS---P---APSIVWFRN--NKP------------LLSSPKKREIFDGENIILELKEADS  623 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~---P---~p~v~W~~~--~~~------------i~~~~~~~~~~~~~~~~L~i~~~~~  623 (785)
                      .+....+.+|++++|.|.+.+.   .   ...+.|||.  |+.            .....++....++....|+|.+++.
T Consensus         7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~   86 (113)
T d1q9ra1           7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA   86 (113)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence            3456789999999999987653   1   124999983  210            1112344445566778999999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|+|.|.|.+.+.
T Consensus        87 -~Dsa~YyCA~~~~   99 (113)
T d1q9ra1          87 -EDLAVYYCKQSYN   99 (113)
T ss_dssp             -GGCEEEEEEECSS
T ss_pred             -CCCeEEEecccCC
Confidence             9999999987643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.96  E-value=1.4e-05  Score=64.06  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             eeeeeeeecCeEEEEEEEecCC---CCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCc
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASP---APSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDA  627 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P---~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~  627 (785)
                      +....+.+|++|+|.|...+..   ...+.|||..  +   -+         ....++.....+....|.|.+++. +|+
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Ds   85 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQA-EDE   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCG-GGC
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcc-ccC
Confidence            3467899999999999987642   2358999832  1   11         112234444566778999999999 999


Q ss_pred             eeEEEEEEcCCc
Q psy2775         628 GDYKVVATNELG  639 (785)
Q Consensus       628 G~Y~C~a~n~~g  639 (785)
                      |.|.|.+.+..+
T Consensus        86 a~YyCa~~~~~~   97 (112)
T d1lgva1          86 ADYYCSSYDGSS   97 (112)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEeeecCCC
Confidence            999998876443

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.96  E-value=2.3e-05  Score=62.51  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--E-E--c----cCCC--------CEEEeecCCccceEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--E-P--L----QETD--------EVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~-~--~----~~~~--------~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+.+.|..+.+.+|++++|.|..++ ....+.||+..  + +  +    ..+.        ++......   .....|+|
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I   78 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPS---QEQFSLIL   78 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEE---TTEEEEEE
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEecc---CCEEEEEE
Confidence            4667799999999999999999754 34579999832  1 1  1    0011        11111111   11256999


Q ss_pred             cccCCCCCeEEEEEEEcC
Q psy2775          77 KSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~   94 (785)
                      .+++.+|+|.|.|.+...
T Consensus        79 ~~~~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          79 ESATPSQTSVYFCASGGG   96 (110)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             CCCCHhhCEEEEEeeCCC
Confidence            999999999999987643

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.96  E-value=1.1e-05  Score=64.44  Aligned_cols=70  Identities=11%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             eeeeeecCeEEEEEEEecCC--CCceEEEeCC-----EEe---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         567 EKTVKEKGTIRLMAKVKASP--APSIVWFRNN-----KPL---------LSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~-----~~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      ...+.+|++++|.|...+.-  ...+.||+..     +-+         ...++.....++..+.|+|.+++. +|+|.|
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsa~Y   87 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQT-GDEADY   87 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG-GGCSEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeecc-ccCcce
Confidence            56899999999999987543  3469999731     111         112344445566778999999999 999999


Q ss_pred             EEEEEcC
Q psy2775         631 KVVATNE  637 (785)
Q Consensus       631 ~C~a~n~  637 (785)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9988643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.96  E-value=3.6e-05  Score=61.28  Aligned_cols=82  Identities=21%  Similarity=0.307  Sum_probs=58.3

Q ss_pred             CeEEecCCcEEEEEEEeCC---CceEEEEECC--EE---c---------ccCCCEEEEEeCcEEEEEEccCCCCCcEEEE
Q psy2775         424 DVKVSRDEKASFEIELTKG---DALVKWYKDG--KE---I---------AFSENVTLSIDGKKQKLIIFSAGLEDAGEYS  486 (785)
Q Consensus       424 ~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  486 (785)
                      .+.+.+|++++|.|.+.+.   ...+.||+..  ..   +         ...++.....++....|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            5788899999999998763   4568999832  11   1         1224666777778899999999999999999


Q ss_pred             EEEeecCcce----eEEEEEEEc
Q psy2775         487 CRVGDTGDKE----SKATLTVEA  505 (785)
Q Consensus       487 C~a~n~g~~~----~~~~l~V~~  505 (785)
                      |.+...+...    .-..|+|.+
T Consensus        89 CA~~~~~~~~~~FG~GT~LtVlg  111 (114)
T d2rhea_          89 CAAWNDSLDEPGFGGGTKLTVLG  111 (114)
T ss_dssp             EEEEETTTTEEEECCCEEEEECS
T ss_pred             EeecCCCCCCCEECCCeEEEECC
Confidence            9887532221    225566654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.96  E-value=2.2e-05  Score=63.68  Aligned_cols=77  Identities=14%  Similarity=0.257  Sum_probs=52.5

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--EE---c---c-----------CCCCEEEeecCCccceEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--EP---L---Q-----------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~~~   73 (785)
                      +.+++..+.+.+|++++|.|.++|..  ...+.||+..  +.   |   .           ...++.+..+....  ...
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~--~~~   81 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETS--TST   81 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTT--EEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeecccc--cee
Confidence            44556678899999999999998753  3568999842  11   1   0           11234444332222  256


Q ss_pred             EEEcccCCCCCeEEEEEEEc
Q psy2775          74 VTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      |+|.+++.+|+|.|.|.+..
T Consensus        82 L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          82 LTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             ecccccccccCcEEEEeeeC
Confidence            99999999999999998753

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=1.1e-05  Score=63.84  Aligned_cols=76  Identities=11%  Similarity=0.212  Sum_probs=51.6

Q ss_pred             CCceEecCCCeEEEEEEEEec--CCCeeEEEEC--CE----Ecc-C----------CCCEEEeecCCccceEEEEEEccc
Q psy2775          19 TKPVYAEENSEVTLEVRLVAV--PEPDLLWYYN--GE----PLQ-E----------TDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~--~~----~~~-~----------~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      .+...+++|++|+|.|..++.  ......|++.  ++    .+. .          .+++.+..+..  ....+|+|.++
T Consensus         2 e~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~--~~~~~lti~~L   79 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPS--EAMLQVQMTDL   79 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGG--GTEEEEEECSC
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECC--CCEEEEEECcc
Confidence            345788999999999998754  4456899984  22    111 0          12344443322  23356999999


Q ss_pred             CCCCCeEEEEEEEcCCe
Q psy2775          80 KKREEGVYTVVAKNREG   96 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~~~~   96 (785)
                      +.+|+|.|.|.......
T Consensus        80 ~~eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          80 QVTDSGLYRCVIYHPPN   96 (110)
T ss_dssp             CGGGCEEEEEEEECTTS
T ss_pred             ccCCCEEEEEEEeCCCC
Confidence            99999999999865443

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.95  E-value=7.6e-06  Score=65.61  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE---ec---------CCCCeeEE--eeCCeEEEEEccCCCCCCcee
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---LL---------SSPKKREI--FDGENIILELKEADSETDAGD  629 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~---i~---------~~~~~~~~--~~~~~~~L~i~~~~~~~d~G~  629 (785)
                      ....+.+|++++|.|...+.-...+.|||..  ..   +.         ...+....  ..+....|.|.++.. +|+|.
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa~   85 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-GDSAT   85 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT-TSCSE
T ss_pred             CEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC-CCcee
Confidence            3567899999999999876655579999831  11   10         01111122  224467899999999 99999


Q ss_pred             EEEEEEc
Q psy2775         630 YKVVATN  636 (785)
Q Consensus       630 Y~C~a~n  636 (785)
                      |.|.+.-
T Consensus        86 YyCa~~~   92 (110)
T d1u3ha1          86 YFCAASA   92 (110)
T ss_dssp             EEECCEE
T ss_pred             EeeeecC
Confidence            9999863

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.95  E-value=1.6e-05  Score=63.35  Aligned_cols=74  Identities=14%  Similarity=0.181  Sum_probs=49.4

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecC-----CCeeEEEECC--EE---c---------cCCCCEEEeecCCccceEEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVP-----EPDLLWYYNG--EP---L---------QETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p-----~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +++.|..+.+.+|++|+|.|++++..     ...+.||+..  ..   |         ....++.....+  .  ...|+
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~--~--~~~L~   79 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG--T--DFTLK   79 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET--T--EEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC--C--EEEEE
Confidence            45668899999999999999975432     2358999742  11   1         111233222211  1  24699


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|+|.|.|...
T Consensus        80 I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          80 ISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             ECccccCcCEeEEEEcC
Confidence            99999999999999654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.94  E-value=2.8e-05  Score=60.38  Aligned_cols=83  Identities=12%  Similarity=0.209  Sum_probs=55.6

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCe
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ..||.+..-+.. .+..|+.++|.|.+.|+ | ...|.|++||..+..+...  .....++.....+.|.+..   .+..
T Consensus         3 ~v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~   78 (101)
T d1fnga1           3 NVAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDD   78 (101)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTC
T ss_pred             CcCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCC
Confidence            457777664322 24568889999999987 4 3689999999987653211  2223444555667787765   3455


Q ss_pred             EEEEEEEcCCe
Q psy2775          86 VYTVVAKNREG   96 (785)
Q Consensus        86 ~Y~C~a~~~~~   96 (785)
                      .|+|.+.+...
T Consensus        79 ~ytC~V~H~sl   89 (101)
T d1fnga1          79 FYDCEVDHWGL   89 (101)
T ss_dssp             CEEEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            79999998753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4.9e-06  Score=67.06  Aligned_cols=74  Identities=12%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             CceEecCCCeEEEEEEEEec--CCCeeEEEECCE--E---cc---C---------CCCEEEeecCCccceEEEEEEcccC
Q psy2775          20 KPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGE--P---LQ---E---------TDEVVFSDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~--~---~~---~---------~~~~~~~~~~~~~~~~~~L~i~~~~   80 (785)
                      ....+++|++|+|.|..++.  ....+.|+|...  .   +.   .         ..++.+..+...  ...+|+|.+++
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~~Lti~~l~   84 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH--GLLRVRMVNLQ   84 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTT--TEEEEEECSCC
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCC--CEEEEEEccCC
Confidence            34788999999999997543  445689998421  1   10   0         013344333222  23569999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy2775          81 KREEGVYTVVAKNRE   95 (785)
Q Consensus        81 ~~D~G~Y~C~a~~~~   95 (785)
                      .+|+|.|.|.+....
T Consensus        85 ~~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          85 VEDSGLYQCVIYQPP   99 (113)
T ss_dssp             GGGCEEEEEEECCTT
T ss_pred             cccCceEEEEEECCC
Confidence            999999999986543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4.9e-06  Score=65.66  Aligned_cols=85  Identities=12%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCE---EEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEV---VFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      +|.+..-+.......++.++|.|.+.|. | ...|.|+++|..+......   .....++.+...+.|+|..-+..+...
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            4554332223344467789999999886 4 3689999999987654211   233445556667889998777667778


Q ss_pred             EEEEEEcCCe
Q psy2775          87 YTVVAKNREG   96 (785)
Q Consensus        87 Y~C~a~~~~~   96 (785)
                      |+|.|.+...
T Consensus        84 ytC~V~H~~l   93 (105)
T d1fp5a2          84 FICRAVHEAA   93 (105)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEECCC
Confidence            9999998653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=9.8e-06  Score=65.28  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCC-----EEe---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeEE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNN-----KPL---------LSSPKKREIFDGENIILELKEADSETDAGDYK  631 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~-----~~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~  631 (785)
                      ..+.+.+|++++|.|...+.-...+.|||..     ..+         ....++.....+....|.|.++.. +|+|.|.
T Consensus         9 ~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~-~DsavYy   87 (119)
T d1f3rb2           9 SLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQP-EDVATYF   87 (119)
T ss_dssp             SEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCG-GGCSEEE
T ss_pred             CEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCcc-CCCeEEE
Confidence            4567899999999999876655679999832     111         112334444566678899999999 9999999


Q ss_pred             EEEEc
Q psy2775         632 VVATN  636 (785)
Q Consensus       632 C~a~n  636 (785)
                      |.+.+
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.92  E-value=1.7e-05  Score=62.67  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=51.1

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeC--CE-E--ec---------CCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK-P--LL---------SSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~-~--i~---------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      +....+.+|++|+|.|.........+.|||.  |+ +  +.         ..+++.....+....|.|.+++. +|+|.|
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~-~Dsa~Y   84 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQP-EDEAAY   84 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCG-GGCSEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccc-cCCceE
Confidence            3456788999999999876544456899982  21 1  11         11234455566778999999999 999999


Q ss_pred             EEEEEc
Q psy2775         631 KVVATN  636 (785)
Q Consensus       631 ~C~a~n  636 (785)
                      .|.+..
T Consensus        85 yCA~~~   90 (108)
T d1nfde1          85 YCLSSY   90 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            998864

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=2.2e-05  Score=60.96  Aligned_cols=69  Identities=17%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeC-CeE-EEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG-ENI-ILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~-~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ...|+.++|.|.+.|+ |.. .|+|++||.++..........++ +.+ ......+.. ++.+.|+|.+....-
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~-~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTP-TETDTYACRVKHDSM   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECC-CSSCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecC-cCCCEEEEEEEeCCC
Confidence            3468889999999997 554 89999999998654333233322 221 222223344 667789999998653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.92  E-value=1.2e-05  Score=64.17  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             eeeeeecCeEEEEEEEecCC--CCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         567 EKTVKEKGTIRLMAKVKASP--APSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      ...+.+|++|+|.|.+.+.-  ...+.||+..  .   -+         ...+++....++....|.|.++.. +|++.|
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DsA~Y   87 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLES-EDEADY   87 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCc-ccCceE
Confidence            46788999999999987653  4579999832  1   11         112244444566778999999999 999999


Q ss_pred             EEEEEc
Q psy2775         631 KVVATN  636 (785)
Q Consensus       631 ~C~a~n  636 (785)
                      .|.+..
T Consensus        88 yCA~~~   93 (114)
T d2rhea_          88 YCAAWN   93 (114)
T ss_dssp             EEEEEE
T ss_pred             EEeecC
Confidence            998864

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.5e-05  Score=59.19  Aligned_cols=82  Identities=11%  Similarity=0.112  Sum_probs=54.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .||.+..-+.. .+..|+.++|.|.+.|. | ...|+|+++|..+....... ....++.....+.|.+.   .++.+.|
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~y   78 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTY   78 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEec---CcCCCEE
Confidence            35666543222 23578899999999987 3 36899999999886644332 23344445555666664   4567789


Q ss_pred             EEEEEcCCe
Q psy2775          88 TVVAKNREG   96 (785)
Q Consensus        88 ~C~a~~~~~   96 (785)
                      +|.+.+...
T Consensus        79 tC~V~H~sl   87 (99)
T d1lk2b_          79 ACRVKHDSM   87 (99)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999998653

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=2.5e-05  Score=62.35  Aligned_cols=75  Identities=16%  Similarity=0.304  Sum_probs=50.5

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c-----------c--CCCCEEEeecCCccceEEEEEEc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L-----------Q--ETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~-----------~--~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .+.|..+.+.+|++|+|.|...+ ....+.||+..  +.   |           .  ...++.....++ .  ...|+|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~~L~i~   78 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGG-T--YSTLKVQ   78 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTS-S--SEEEEES
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCC-C--EEEEEEC
Confidence            46688999999999999998543 34578999742  11   1           0  012232222221 1  2469999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy2775          78 SIKKREEGVYTVVAKNR   94 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~   94 (785)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (111)
T d2esve1          79 PAELEDSGVYFCASSQD   95 (111)
T ss_dssp             SCCGGGCEEEEEEEESS
T ss_pred             CcccCCCceEEEeeeCC
Confidence            99999999999987643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.91  E-value=1.1e-05  Score=63.91  Aligned_cols=70  Identities=14%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeCC--E---Ee---------cCCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDAGDYKV  632 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~---~i---------~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C  632 (785)
                      ...+.+|++|+|.|.........+.|||..  +   .+         ....+......+....|.|.+++. +|+|.|.|
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~DsavYyC   87 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEA-GDEADYYC   87 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG-GGCEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeecc-CCCEEEEE
Confidence            467889999999999765445579999832  1   11         112334445566778999999999 99999999


Q ss_pred             EEEcC
Q psy2775         633 VATNE  637 (785)
Q Consensus       633 ~a~n~  637 (785)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            98654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.89  E-value=8.8e-06  Score=64.43  Aligned_cols=72  Identities=13%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEE---c---------cCCCCEEEeecCCccceEEEEEEcccCCCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEP---L---------QETDEVVFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      .|..+.+.+|++|+|.|.........+.||+.  ++.   |         ...+++.....+.    ...|+|.+++.+|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~----~~~L~I~~l~~~D   80 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGT----TATLTISGAQPED   80 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETT----EEEEEETTCCGGG
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCC----EeeeeEcCccccC
Confidence            46678999999999999875444456899983  221   1         0112343333221    2569999999999


Q ss_pred             CeEEEEEEEc
Q psy2775          84 EGVYTVVAKN   93 (785)
Q Consensus        84 ~G~Y~C~a~~   93 (785)
                      +|.|.|.+..
T Consensus        81 sa~YyCA~~~   90 (108)
T d1nfde1          81 EAAYYCLSSY   90 (108)
T ss_dssp             CSEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999998764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.89  E-value=1.5e-05  Score=63.74  Aligned_cols=73  Identities=8%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             eeeeeeeecCeEEEEEEEecCCC--CceEEEeCC--EEe------------cCCCCeeEEe--eCCeEEEEEccCCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNN--KPL------------LSSPKKREIF--DGENIILELKEADSETD  626 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~~--~~i------------~~~~~~~~~~--~~~~~~L~i~~~~~~~d  626 (785)
                      +...++.+|++++|.|...+...  .-+.|||..  +..            ...++.....  .+....|.|.+++. +|
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~-~D   85 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT-ED   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc-cc
Confidence            44678999999999999877543  349999832  110            0112333332  34577999999999 99


Q ss_pred             ceeEEEEEEcCC
Q psy2775         627 AGDYKVVATNEL  638 (785)
Q Consensus       627 ~G~Y~C~a~n~~  638 (785)
                      +|.|.|.+.+..
T Consensus        86 sa~YyCA~~~~~   97 (111)
T d1cd0a_          86 EADYYCQSYDAR   97 (111)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CcEEEEeeccCC
Confidence            999999876543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.2e-05  Score=60.84  Aligned_cols=83  Identities=12%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      ..||.+..-+.. .+..|+.++|.|.+.|+ |. ..|+|++||..+...... .....++.....+.|.+.   .+|.+.
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~   78 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDE   78 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCC
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEEC---CCCCCE
Confidence            356666553222 24679999999999997 33 588999999988543222 122333344445556664   456779


Q ss_pred             EEEEEEcCCe
Q psy2775          87 YTVVAKNREG   96 (785)
Q Consensus        87 Y~C~a~~~~~   96 (785)
                      |+|.+.+...
T Consensus        79 ytC~V~H~sl   88 (100)
T d1k5nb_          79 YACRVNHVTL   88 (100)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEeCCC
Confidence            9999998653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=2.8e-05  Score=62.45  Aligned_cols=75  Identities=13%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEc---------------cCCCCEEEeecCCccceEEEEEEcc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPL---------------QETDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      ++.|..+.+.+|++|+|.|...+ ....+.||+.  ++..               ....++....... .  ...|+|.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~L~I~~   78 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSN-S--RSEMNVST   78 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTT-S--CEEEEECS
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcC-C--eeEEEECC
Confidence            45688899999999999999644 3457899982  2211               0011222222111 1  24699999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy2775          79 IKKREEGVYTVVAKNR   94 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~   94 (785)
                      ++.+|+|.|.|.+...
T Consensus        79 ~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          79 LELGDSALYLCASSLA   94 (113)
T ss_dssp             CCGGGCEEEEEEEESS
T ss_pred             CCcccceeeeeeeeCC
Confidence            9999999999988753

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.88  E-value=2.1e-05  Score=63.58  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEE---e-----------cC---CCCeeEEe-eCCeEEEEEccC
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP---L-----------LS---SPKKREIF-DGENIILELKEA  621 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~---i-----------~~---~~~~~~~~-~~~~~~L~i~~~  621 (785)
                      ...+....+.+|++|+|.|...+.....+.|||.  |+.   |           ..   ..++.... .+..+.|+|.++
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   84 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSA   84 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccc
Confidence            3344567899999999999988776678999982  211   0           00   11222222 234578999999


Q ss_pred             CCCCCceeEEEEEEcCC
Q psy2775         622 DSETDAGDYKVVATNEL  638 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~  638 (785)
                      .. +|+|.|.|.+.-..
T Consensus        85 ~~-~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          85 HP-EDSGFYVCSALAGS  100 (118)
T ss_dssp             CG-GGCEEEEEEEECSS
T ss_pred             cc-ccCceEEEEEecCC
Confidence            99 99999999987543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.88  E-value=1.1e-05  Score=64.99  Aligned_cols=72  Identities=21%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeC--CE---Eec----------CCCCeeEEe--eCCeEEEEEccCCCCCCc
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK---PLL----------SSPKKREIF--DGENIILELKEADSETDA  627 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~---~i~----------~~~~~~~~~--~~~~~~L~i~~~~~~~d~  627 (785)
                      +..+.+.+|++|+|.|.....-...+.|||.  |+   .|.          ...+.....  ......|+|.++.. +|+
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Ds   85 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM-SDA   85 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG-GGC
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc-cCC
Confidence            4467899999999999988766668999982  11   110          011122222  12345799999999 999


Q ss_pred             eeEEEEEEcC
Q psy2775         628 GDYKVVATNE  637 (785)
Q Consensus       628 G~Y~C~a~n~  637 (785)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999999764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.6e-05  Score=59.63  Aligned_cols=79  Identities=18%  Similarity=0.288  Sum_probs=51.8

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCC---CCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQET---DEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      ..||.+..-.    -..++.++|.|.+.|+ |. ..|+|++||..+...   ..-...+.++.....+.|.+.   ..|.
T Consensus         2 ~vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~---~~~~   74 (94)
T d1de4a1           2 QVPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVP---PGEE   74 (94)
T ss_dssp             CBCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEEC---TTCG
T ss_pred             CCCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEEC---CCCC
Confidence            3577776421    1246789999999996 44 689999999987532   122233344444445556654   3567


Q ss_pred             eEEEEEEEcCC
Q psy2775          85 GVYTVVAKNRE   95 (785)
Q Consensus        85 G~Y~C~a~~~~   95 (785)
                      ..|+|.+.+..
T Consensus        75 ~~ytC~V~H~s   85 (94)
T d1de4a1          75 QRYTCQVEHPG   85 (94)
T ss_dssp             GGEEEEEECTT
T ss_pred             CEEEEEEEeCC
Confidence            78999999864

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=6.1e-06  Score=65.58  Aligned_cols=71  Identities=18%  Similarity=0.186  Sum_probs=48.9

Q ss_pred             eeeeeecCeEEEEEEEecCCC----CceEEEeCCEEecC------------CCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPA----PSIVWFRNNKPLLS------------SPKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~~~~i~~------------~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      .++...|++++|.|.......    ..+.|.+++..+..            ..+... ...+..+|.|.+++. +|+|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~-~~~g~~sL~I~~v~~-~D~G~Y   80 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRP-SDEGTY   80 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCG-GGCEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeee-ccCCcEEEEECcCCh-HHCeEE
Confidence            467889999999998764322    25788887765411            011111 223456899999999 999999


Q ss_pred             EEEEEcCCc
Q psy2775         631 KVVATNELG  639 (785)
Q Consensus       631 ~C~a~n~~g  639 (785)
                      .|.+.+..+
T Consensus        81 ~C~V~~~~~   89 (105)
T d1dr9a1          81 ECVVLKYEK   89 (105)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEeCCC
Confidence            999976443

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.87  E-value=1.4e-05  Score=64.56  Aligned_cols=78  Identities=14%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecC--CCeeEEEECC--E---Ec----cCC---------CCEEEeecCCccceEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNG--E---PL----QET---------DEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~--~---~~----~~~---------~~~~~~~~~~~~~~~~~   73 (785)
                      .+.++|..+.+.+|++|+|.|.+.+..  ...+.||+..  +   .|    ..+         .++.+..+...  ....
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~--~~~~   80 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSA--STSI   80 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTT--TEEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccc--cccc
Confidence            345566788889999999999986542  3468999842  1   11    111         12223222222  2356


Q ss_pred             EEEcccCCCCCeEEEEEEEc
Q psy2775          74 VTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      |+|.+++.+|+|.|.|.+..
T Consensus        81 L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          81 LTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEECSCCGGGCSEEEEEECC
T ss_pred             ccccccccccceeEEEEEcC
Confidence            99999999999999998764

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.87  E-value=2.4e-05  Score=60.33  Aligned_cols=70  Identities=17%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             eeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCee-EEee-CCeE-EEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         570 VKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR-EIFD-GENI-ILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~-~~~~-~~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      +..++.++|.|.|.|+ |. ..|+|++||+.+..+.... ...+ ++.+ ......+.. ++...|+|.+.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~-~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTP-SYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECC-CTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCC-CCCCEEEEEEEeCCCC
Confidence            5567899999999997 54 4899999999986554322 2222 2222 112222344 5666899999997554

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.86  E-value=4.7e-05  Score=58.59  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=54.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .||.+...+.. .+..|+.++|.|.+.|+  +...++|++||..+......  ...+.++.+...+.|++.   .++...
T Consensus         2 ~PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~   77 (98)
T d1hdmb1           2 RPPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDT   77 (98)
T ss_dssp             BCCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCE
Confidence            36766553322 25568899999999997  34789999999988654221  233344455555667764   445668


Q ss_pred             EEEEEEcCCe
Q psy2775          87 YTVVAKNREG   96 (785)
Q Consensus        87 Y~C~a~~~~~   96 (785)
                      |+|.+.+...
T Consensus        78 ytC~V~H~sl   87 (98)
T d1hdmb1          78 YTCVVEHIGA   87 (98)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999998754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.85  E-value=4.2e-05  Score=59.33  Aligned_cols=66  Identities=14%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFD-GEN----IILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      +..|+.++|.|.+.|+ |.. .|+|++||+++..+.... ...+ ++.    +.|.+.   . .+...|+|.+.+..-
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~-~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---P-STDDFYDCEVDHWGL   89 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---C-CTTCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---C-CCCCEEEEEEEECCC
Confidence            4567889999999997 655 899999999986542211 1122 222    244443   3 455689999998753

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.85  E-value=2.8e-05  Score=62.50  Aligned_cols=75  Identities=19%  Similarity=0.328  Sum_probs=50.0

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--E---c---cC---------CCCEEEeecCCccceEEEEEEcc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--P---L---QE---------TDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~---~---~~---------~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      ++.|..+.+.+|++|+|+|..+ .....+.||+...  .   +   ..         ..+.......+ .  ...|+|.+
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~L~I~~   78 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKK-E--SFPLTVTS   78 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSST-T--BCCEEECS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccC-C--eEEEEECc
Confidence            4568889999999999999975 3446799998421  1   0   01         01111111111 1  14599999


Q ss_pred             cCCCCCeEEEEEEEcC
Q psy2775          79 IKKREEGVYTVVAKNR   94 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~   94 (785)
                      ++.+|+|.|.|.+...
T Consensus        79 ~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          79 AQKNPTAFYLCASSSR   94 (114)
T ss_dssp             CCSCCCEEEEEEEESS
T ss_pred             CCcCCceeEEEeeccC
Confidence            9999999999987643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=3.4e-05  Score=58.57  Aligned_cols=64  Identities=19%  Similarity=0.159  Sum_probs=43.5

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFD-GEN----IILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      .+..++|.|.+.|+ |.. .|+|++||.++..+. .....+ ++.    +.|.+.   . ++...|+|.+....-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~---~-~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVK---R-GDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEE---T-TCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEEC---C-CCCCEEEEEEEeCCCC
Confidence            35689999999996 765 899999999885442 222222 222    234443   4 5667899999987543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.85  E-value=1.5e-05  Score=64.34  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             eeeeeeeeecCeEEEEEEEecC-CCCceEEEeC-----CEEe------c-----------CCCCeeEEe--eCCeEEEEE
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN-----NKPL------L-----------SSPKKREIF--DGENIILEL  618 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~-----~~~i------~-----------~~~~~~~~~--~~~~~~L~i  618 (785)
                      .+....+.+|++|+|.|.+.+. ....+.|||.     ++.+      .           ...+.....  .....+|+|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            4456789999999999998874 4457999983     2211      0           011222222  234568999


Q ss_pred             ccCCCCCCceeEEEEEEc
Q psy2775         619 KEADSETDAGDYKVVATN  636 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+++. +|+|.|.|.+..
T Consensus        84 ~~~~~-~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          84 MNVKP-EDSDFYFCATVG  100 (115)
T ss_dssp             CSCCG-GGCEEEEEEEEC
T ss_pred             cccCC-CCCcEEEEeEcC
Confidence            99999 999999998763

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.2e-05  Score=63.10  Aligned_cols=87  Identities=10%  Similarity=0.181  Sum_probs=58.1

Q ss_pred             CCCeeee-cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          11 IPPTFSK-KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        11 ~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      .||.+.. .|....+ .++.++|.|.+.|+ |. ..|.|+++|..+.....  ......++.+...+.|+|...+.....
T Consensus         4 ~~P~V~~~~ps~~~~-~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~   82 (102)
T d1rzfl2           4 AAPSVTLFPPSSEEL-QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHR   82 (102)
T ss_dssp             BCCEEEEECCCHHHH-HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSS
T ss_pred             CCCEEEEECCCHHHh-cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCC
Confidence            3566544 3333333 46779999999986 33 57999999998765422  122334556666788988776655566


Q ss_pred             EEEEEEEcCCeeE
Q psy2775          86 VYTVVAKNREGEA   98 (785)
Q Consensus        86 ~Y~C~a~~~~~~~   98 (785)
                      .|+|.|.+.....
T Consensus        83 ~ytC~V~H~~~~~   95 (102)
T d1rzfl2          83 SYSCQVTHEGSTV   95 (102)
T ss_dssp             CEEEEEEETTEEE
T ss_pred             EEEEEEEECCccE
Confidence            7999999976543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.84  E-value=6e-05  Score=60.18  Aligned_cols=72  Identities=24%  Similarity=0.373  Sum_probs=52.9

Q ss_pred             ccCCCeEEecCCcEEEEEEEeCC-------CceEEEEEC--CEE------------cccCCCEEEEEeCcEEEEEEccCC
Q psy2775         420 VPLQDVKVSRDEKASFEIELTKG-------DALVKWYKD--GKE------------IAFSENVTLSIDGKKQKLIIFSAG  478 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~~-------~~~i~W~~~--~~~------------~~~~~~~~~~~~~~~~~L~i~~~~  478 (785)
                      ..|..+.+.+|++++|.|...+.       ...+.||+.  |+.            ....++.....++....|.|.+++
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~   85 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ   85 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence            44567788999999999987641       234899983  221            112345666667778899999999


Q ss_pred             CCCcEEEEEEEee
Q psy2775         479 LEDAGEYSCRVGD  491 (785)
Q Consensus       479 ~~d~G~Y~C~a~n  491 (785)
                      .+|+|.|.|.+.+
T Consensus        86 ~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          86 AEDLAVYYCKQSY   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCCCeEEEecccC
Confidence            9999999998764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.3e-05  Score=58.32  Aligned_cols=66  Identities=11%  Similarity=0.216  Sum_probs=43.8

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCC--CeeEEeeCC-eE-EEEEccCCCCCCceeEEEEEEcCC
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSP--KKREIFDGE-NI-ILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~--~~~~~~~~~-~~-~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .++.++|.|.+.|+ |.. .|+|++||+++..+.  ......+++ .+ ......+.. .+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~-~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP-GEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECT-TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECC-CCCCEEEEEEEeCC
Confidence            46789999999995 765 899999999985432  122222222 22 223333445 66778999999874

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.82  E-value=3.3e-05  Score=59.85  Aligned_cols=78  Identities=13%  Similarity=0.026  Sum_probs=52.7

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      ..|.+...|.. .|..|++|+|.|... .+...+.|+|+|........... ...    ....+.|..+...|+|.|+|.
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~-~~~----~~~~f~~~~~~~~~~G~Y~C~   77 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGP-KVN----GTFQADFPLGPATHGGTYRCF   77 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEE-EET----TEEEEEEEEEECCSCEEEEEE
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccc-cCC----ccEEEEEeccccccCEEEEEE
Confidence            46888888854 778999999999863 45678999999853221110011 111    124467888888999999998


Q ss_pred             EEcCC
Q psy2775          91 AKNRE   95 (785)
Q Consensus        91 a~~~~   95 (785)
                      .....
T Consensus        78 y~~~~   82 (99)
T d1nkra2          78 GSFHD   82 (99)
T ss_dssp             EEETT
T ss_pred             eecCC
Confidence            76543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.81  E-value=2.2e-05  Score=63.41  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             eeeeeeeecCeEEEEEEEec-CCCCceEEEeCC---EE--ec-----C-----CCCeeEEe--eCCeEEEEEccCCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNN---KP--LL-----S-----SPKKREIF--DGENIILELKEADSETD  626 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~---~~--i~-----~-----~~~~~~~~--~~~~~~L~i~~~~~~~d  626 (785)
                      +..+.+.+|++|+|.|.... .....+.|||..   .+  +.     .     ..++....  .+....|+|.++.. +|
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D   84 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI-ED   84 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG-GG
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc-cc
Confidence            34678999999999998754 344568999821   11  10     0     01222222  23457899999999 99


Q ss_pred             ceeEEEEEEcCC
Q psy2775         627 AGDYKVVATNEL  638 (785)
Q Consensus       627 ~G~Y~C~a~n~~  638 (785)
                      +|.|.|.+....
T Consensus        85 sa~YyCa~~~~~   96 (115)
T d1fo0a_          85 SAVYFCAMRGDY   96 (115)
T ss_dssp             CEEEEEEEECCC
T ss_pred             cccccceeecCC
Confidence            999999987543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.81  E-value=2.7e-05  Score=62.47  Aligned_cols=73  Identities=16%  Similarity=0.281  Sum_probs=49.8

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E--E-e---------cCCCCeeEEe--eCCeEEEEEccCCCCCCce
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K--P-L---------LSSPKKREIF--DGENIILELKEADSETDAG  628 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~--~-i---------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G  628 (785)
                      +....+.+|++++|.|...+. ...+.|||..  .  . +         ....+.....  ......|+|.++.. +|+|
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa   84 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP-GDTG   84 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG-GGCE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc-ccee
Confidence            446789999999999998764 3479999821  1  0 0         0111222222  34567899999999 9999


Q ss_pred             eEEEEEEcCCc
Q psy2775         629 DYKVVATNELG  639 (785)
Q Consensus       629 ~Y~C~a~n~~g  639 (785)
                      .|.|.+....+
T Consensus        85 ~YyCa~~~~~~   95 (115)
T d1ogad1          85 LYLCAGAGSQG   95 (115)
T ss_dssp             EEEEEEECTTS
T ss_pred             eEcccccCCCC
Confidence            99998875443

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.81  E-value=2.4e-05  Score=60.21  Aligned_cols=64  Identities=14%  Similarity=0.301  Sum_probs=45.1

Q ss_pred             cCeEEEEEEEecCCCCceEEEeCC--E---Ee--------cCCCCeeEEe--eCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775         573 KGTIRLMAKVKASPAPSIVWFRNN--K---PL--------LSSPKKREIF--DGENIILELKEADSETDAGDYKVVATNE  637 (785)
Q Consensus       573 g~~v~l~C~~~g~P~p~v~W~~~~--~---~i--------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~n~  637 (785)
                      |++|+|.|...+.....+.|||..  .   -|        ....++....  .....+|+|.+++. +|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~-~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQP-SDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeecccc-CcCccceeeEecC
Confidence            789999999887777789999822  1   01        0112222221  23457899999999 9999999998754

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.81  E-value=1.5e-05  Score=63.92  Aligned_cols=74  Identities=19%  Similarity=0.341  Sum_probs=50.0

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EE---c-------------cCCCCEEEeecCCccceEEEEEEc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EP---L-------------QETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      .+.|..+.+.+|++++|.|...+ ....+.||+..  +.   +             ....++.... ....  ...|+|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~L~I~   78 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGS--VSTLKIQ   78 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSS--CEEEEES
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCC--EEEEEEC
Confidence            46688999999999999998643 34579999831  11   0             0112222221 1111  2569999


Q ss_pred             ccCCCCCeEEEEEEEc
Q psy2775          78 SIKKREEGVYTVVAKN   93 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~   93 (785)
                      +++.+|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          79 RTQQEDSAVYLCASSL   94 (112)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CCCcCCCEEEEEeeeC
Confidence            9999999999999864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.80  E-value=5.2e-05  Score=59.98  Aligned_cols=73  Identities=11%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC----CeeEEEEC--CEEc------c----------CCCCEEEeecCCccceEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYN--GEPL------Q----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      ++....+++|++|+|.|+++|...    ..+.|++.  ++.+      .          -..|+.+..+....  ...|+
T Consensus         6 qsg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~--~~~L~   83 (120)
T d2agjh1           6 ESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKK--QVVLT   83 (120)
T ss_dssp             CCCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTT--EEEEE
T ss_pred             eECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccc--eeeee
Confidence            344566888999999999987532    35789974  2211      0          02345544433332  25699


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        84 i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          84 LTNLDPVDTATYYCART  100 (120)
T ss_dssp             EESCCGGGCEEEEEEEE
T ss_pred             EEeeeeccceEEeeEec
Confidence            99999999999999754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.80  E-value=4.7e-05  Score=59.32  Aligned_cols=76  Identities=9%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  -.+.|++.  ++.      |.           ...|+.+..+.....  ..|+
T Consensus         5 ~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t--~~L~   82 (117)
T d1iqdb1           5 VQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNI--AYME   82 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTE--EEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccce--EEEe
Confidence            3455677899999999999998633  45789873  221      11           123455555444333  3599


Q ss_pred             EcccCCCCCeEEEEEEEcC
Q psy2775          76 IKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~   94 (785)
                      |.+++.+|++.|.|.....
T Consensus        83 i~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          83 LSSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             ECSCCGGGCEEEEEEECSS
T ss_pred             ecccCcCcceEEEEeEcCC
Confidence            9999999999999987543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.80  E-value=5.8e-05  Score=58.75  Aligned_cols=76  Identities=12%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEEc------c----------CCCCEEEeecCCccceEEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEPL------Q----------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .++....++.|++++|.|+++|...  -.+.|++.  ++.+      .          -..|+.+..+...+.  ..|+|
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~--~~L~i   82 (116)
T d7fabh1           5 EQSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQ--FSLRL   82 (116)
T ss_dssp             EEECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTE--EEEEE
T ss_pred             EeECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhh--hhccc
Confidence            3455677899999999999998643  46789874  2211      1          123555555444333  45999


Q ss_pred             cccCCCCCeEEEEEEEcC
Q psy2775          77 KSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~   94 (785)
                      .+++.+|++.|.|.....
T Consensus        83 ~~L~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          83 SSVTAADTAVYYCARNLI  100 (116)
T ss_dssp             CSCCGGGCEEEEEEEECS
T ss_pred             cccccccceEEEeeeecC
Confidence            999999999999986543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00013  Score=51.01  Aligned_cols=60  Identities=15%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             eeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         569 TVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      ....|..+.|+|.....+.+  --.|+|+|+.|..+..     .+....+.|..  . +++|.|.|+..+
T Consensus         8 v~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~-D~SGeY~CVFl~   69 (80)
T d3b5ha2           8 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--D-DQWGEYSCVFLP   69 (80)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--G-GCCEEEEEEEES
T ss_pred             cccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--C-CCCceEEEEEcC
Confidence            34678999999999877554  4789999999986532     23444566764  4 899999999764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.80  E-value=2.1e-05  Score=63.00  Aligned_cols=70  Identities=17%  Similarity=0.188  Sum_probs=48.0

Q ss_pred             eeeeeeecCeEEEEEEEecCC-CCceEEEeC--CEEec----------CC--CCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775         566 EEKTVKEKGTIRLMAKVKASP-APSIVWFRN--NKPLL----------SS--PKKREIFDGENIILELKEADSETDAGDY  630 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~--~~~i~----------~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      ..+.+.+|++|+|.|...+.. ...+.|||.  |+.+.          ..  .+..+..+.....|+|.++.. +|+|.|
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~Dsa~Y   84 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATL-RDAAVY   84 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCG-GGCEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccc-ccceeE
Confidence            356789999999999987654 346999993  21110          00  112222234567899999999 999999


Q ss_pred             EEEEEc
Q psy2775         631 KVVATN  636 (785)
Q Consensus       631 ~C~a~n  636 (785)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=0.00016  Score=50.97  Aligned_cols=79  Identities=18%  Similarity=0.309  Sum_probs=55.9

Q ss_pred             eeeeeeeeecCeEEEEEEEec-CCCCceEEEeCCE----EecCCCCeeEEee----CCeEEEEEccCCCCCCceeEEEEE
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNK----PLLSSPKKREIFD----GENIILELKEADSETDAGDYKVVA  634 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~----~i~~~~~~~~~~~----~~~~~L~i~~~~~~~d~G~Y~C~a  634 (785)
                      +.+..++..|+.+.|+|.+.= .-+|.++|.|-+.    ++...........    -..+.|.+..+.. +|.|.|+|.|
T Consensus         9 R~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~-sDnGsYrCSa   87 (104)
T d1xaua_           9 RNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL-SDNGSYSCST   87 (104)
T ss_dssp             TTEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCG-GGCEEEEEEE
T ss_pred             ecceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeee-cCCCceEEec
Confidence            334668899999999999873 3788999998432    3333333222221    2346899999999 9999999999


Q ss_pred             EcCCcceEE
Q psy2775         635 TNELGSATH  643 (785)
Q Consensus       635 ~n~~g~~~~  643 (785)
                      .-..|-.++
T Consensus        88 nf~s~vieS   96 (104)
T d1xaua_          88 NFNSQVINS   96 (104)
T ss_dssp             EETTEEEEC
T ss_pred             CCChhheec
Confidence            876665443

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.5e-05  Score=58.38  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      ..|.|...|..+ |..|++|+|.|... .....+.++|++........  ...........+.+.|.+++.+|+|.|+|.
T Consensus         3 pkPsLsa~P~~~-v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~--~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~   78 (98)
T d1ugna2           3 IKPTLSAQPSPV-VNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCL--NSQPHARGSSRAIFSVGPVSPSRRWWYRCY   78 (98)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECS-SCCSEEEEEEC------CEE--EC------CCEEEEEECCCCTTSCEEEEEE
T ss_pred             CCCEEEeeCCCc-cCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEee--eeEEcCCCceEEEEEeeecccCCCeEEEEe
Confidence            468888888664 99999999999953 34567788888764322110  000110111235699999999999999998


Q ss_pred             EEcC
Q psy2775          91 AKNR   94 (785)
Q Consensus        91 a~~~   94 (785)
                      ....
T Consensus        79 y~~~   82 (98)
T d1ugna2          79 AYDS   82 (98)
T ss_dssp             EECT
T ss_pred             eEcC
Confidence            8654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=5.7e-05  Score=58.89  Aligned_cols=74  Identities=12%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEEc------c-----------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEPL------Q-----------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +.++....+++|++++|.|+++|...  ..+.|++.  ++.+      .           -..|+.+..+...+.  ..|
T Consensus         4 L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~--~~L   81 (117)
T d1mfah1           4 VQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTT--AYM   81 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE--EEE
T ss_pred             EEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccE--eEe
Confidence            34566788899999999999998633  45788763  2211      1           112455555443333  459


Q ss_pred             EEcccCCCCCeEEEEEE
Q psy2775          75 TIKSIKKREEGVYTVVA   91 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a   91 (785)
                      +|.+++.+|++.|.|.-
T Consensus        82 ~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          82 ELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             eecccCCCcceEEEEec
Confidence            99999999999999974

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.4e-05  Score=60.53  Aligned_cols=89  Identities=13%  Similarity=0.150  Sum_probs=59.1

Q ss_pred             CCCeeeec-C-CceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCe
Q psy2775          11 IPPTFSKK-T-KPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        11 ~~p~~~~~-~-~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      .||.+..- + .......+.+++|.|.+.|. |. ..|+|+++|..+..... ......++.+...+.|+|..-+.....
T Consensus         3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~   82 (104)
T d1o0va1           3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   82 (104)
T ss_dssp             CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCC
Confidence            46665432 2 22233456789999999886 44 47899999998764322 222334555566778988876655677


Q ss_pred             EEEEEEEcCCeeEE
Q psy2775          86 VYTVVAKNREGEAK   99 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~   99 (785)
                      .|+|.|.+......
T Consensus        83 ~ytC~V~H~~~t~~   96 (104)
T d1o0va1          83 TYTCQVTYQGHTFE   96 (104)
T ss_dssp             CEEEEEEETTEEEE
T ss_pred             EEEEEEEECCEeEE
Confidence            89999999875443

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.5e-05  Score=59.58  Aligned_cols=72  Identities=14%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEE
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT  186 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  186 (785)
                      ..|.+...+. ..+..|++|+|.|... .....+.|+|+|...... .........+.|.+++.+|+|.|+|...
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEE-EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCcccee-ecCCCceeEEEecccChhcCceEEEEeE
Confidence            4566666553 4578899999999864 345689999987653322 2233456789999999999999999753

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=8.5e-05  Score=59.43  Aligned_cols=76  Identities=12%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECC--EEc------cC---------CCCEEEeecCCccceEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPL------QE---------TDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      +.+.|..+.+.+|++|+|.|... .....+.||+..  ..+      ..         ..+.......+ .  ...|+|.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~L~i~   78 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKK-E--RFSLILE   78 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSST-T--BCEEEES
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccC-c--EeeeEec
Confidence            56778999999999999999863 234578999832  111      00         11122211111 1  1459999


Q ss_pred             ccCCCCCeEEEEEEEcC
Q psy2775          78 SIKKREEGVYTVVAKNR   94 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~~   94 (785)
                      +++.+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          79 SASTNQTSMYLCASSST   95 (113)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             cCccCCcccEEeeEccC
Confidence            99999999999998753

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.77  E-value=5.3e-05  Score=58.59  Aligned_cols=75  Identities=11%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L   74 (785)
                      +.++....++.|+++.|.|+++|...  -.+.|++.  |+.      |. .          ..|+.+..+...+.  ..|
T Consensus         4 L~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~t--vyL   81 (116)
T d1mjuh1           4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSST--AYM   81 (116)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTE--EEE
T ss_pred             EeeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccce--eEe
Confidence            45677788999999999999998643  45788873  211      11 1          13566655544333  359


Q ss_pred             EEcccCCCCCeEEEEEEE
Q psy2775          75 TIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~   92 (785)
                      +|.+++.+|++.|.|...
T Consensus        82 ~~~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          82 QLSSLTSDDSAVYYCANK   99 (116)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             cccccCCCCceEEEEccc
Confidence            999999999999999743

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.77  E-value=7e-05  Score=58.95  Aligned_cols=74  Identities=11%  Similarity=0.258  Sum_probs=51.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  ..+.|++.  |+.      +.           -.+|+.+..+...+.  ..|+
T Consensus         5 ~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~--v~L~   82 (120)
T d1pg7x1           5 QQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTT--AYIE   82 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTE--EEEE
T ss_pred             eeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcce--EEcc
Confidence            4455667899999999999987643  45789874  221      11           123555555444333  4599


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          83 LVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCcceEEEeeec
Confidence            99999999999999865

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.5e-05  Score=56.65  Aligned_cols=75  Identities=17%  Similarity=0.190  Sum_probs=54.7

Q ss_pred             CCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy2775         234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK  310 (785)
Q Consensus       234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~  310 (785)
                      .+|.+...+. ..+..|++++|.|.........+.|+|+|....... ........+.|.+++.+|+|.|+|.....
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~-~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH-QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE-EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE-cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            3466666554 478899999999986434455899999986443222 22344568999999999999999988754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.76  E-value=2.8e-05  Score=62.27  Aligned_cols=74  Identities=20%  Similarity=0.323  Sum_probs=49.2

Q ss_pred             eeeeeeeeecCeEEEEEEEecCCCCceEEEeCC--E-Ee--c---C----CCCeeEE---eeCCeEEEEEccCCCCCCce
Q psy2775         564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K-PL--L---S----SPKKREI---FDGENIILELKEADSETDAG  628 (785)
Q Consensus       564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~-~i--~---~----~~~~~~~---~~~~~~~L~i~~~~~~~d~G  628 (785)
                      .+....+.+|++++|.|...+. ...+.|||..  . +.  .   .    .......   .....+.|+|.++.. +|+|
T Consensus         7 ~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa   84 (113)
T d1h5ba_           7 SPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL-EDSG   84 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG-GGCE
T ss_pred             CCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH-hHCE
Confidence            3456788999999999998754 3469999822  1 10  0   0    0000000   123456899999999 9999


Q ss_pred             eEEEEEEcCCc
Q psy2775         629 DYKVVATNELG  639 (785)
Q Consensus       629 ~Y~C~a~n~~g  639 (785)
                      .|.|.+....+
T Consensus        85 ~YyCa~~~~~~   95 (113)
T d1h5ba_          85 TYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEEecCCCC
Confidence            99999876543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.76  E-value=8e-05  Score=58.36  Aligned_cols=77  Identities=12%  Similarity=0.274  Sum_probs=54.2

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~   73 (785)
                      ++.++....++.|++++|.|+++|...  -.+.|++.  |+.      +. .          ..|+.+..+...+.  ..
T Consensus         4 ll~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~nt--vy   81 (122)
T d1vgeh1           4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATT--AY   81 (122)
T ss_dssp             SEEECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTE--EE
T ss_pred             eeEecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcce--ee
Confidence            345567788999999999999988643  45788873  211      11 1          24556665544433  34


Q ss_pred             EEEcccCCCCCeEEEEEEEc
Q psy2775          74 VTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      |+|.+++.+|++.|.|....
T Consensus        82 L~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          82 MGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             EEECSCCGGGCEEEEEEEET
T ss_pred             ecccccCCCcceEEEEeecC
Confidence            99999999999999997653

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.76  E-value=5.1e-05  Score=59.25  Aligned_cols=72  Identities=10%  Similarity=0.290  Sum_probs=49.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ++....++.|++++|.|+++|..  .-.+.|++.  ++.      +. .          .+|+.+..+...+.  ..|+|
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t--~~L~i   83 (115)
T d1f3dh1           6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSST--AFMHL   83 (115)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTE--EEEEE
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCcee--eEeee
Confidence            44456789999999999998863  346889874  221      11 1          13455554433332  45999


Q ss_pred             cccCCCCCeEEEEEE
Q psy2775          77 KSIKKREEGVYTVVA   91 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a   91 (785)
                      .+++.+|++.|.|..
T Consensus        84 ~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          84 NSLTFEDSAVYYCAN   98 (115)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             eecCcCCcEEEEEec
Confidence            999999999999964

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.75  E-value=8.5e-05  Score=57.31  Aligned_cols=82  Identities=16%  Similarity=0.216  Sum_probs=54.1

Q ss_pred             CCCCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCe
Q psy2775          10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      ..||.+..-+.. .+..|+..+|.|.+.|+ |. ..|+|++||..+..+...  ...+.++.....+.|++..   +|..
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~   78 (99)
T d1uvqa1           3 NEVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADE   78 (99)
T ss_dssp             CCCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTC
T ss_pred             CcCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCC
Confidence            356766553322 24568889999999998 33 689999999988653211  1233444555566677764   4556


Q ss_pred             EEEEEEEcCC
Q psy2775          86 VYTVVAKNRE   95 (785)
Q Consensus        86 ~Y~C~a~~~~   95 (785)
                      .|+|+|.+..
T Consensus        79 ~ytC~V~H~s   88 (99)
T d1uvqa1          79 IYDCKVEHWG   88 (99)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            8999999864

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.5e-05  Score=56.64  Aligned_cols=68  Identities=10%  Similarity=0.116  Sum_probs=45.0

Q ss_pred             eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeC-Ce-EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG-EN-IILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~-~~-~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ..|+.++|.|.+.|+ |.. .|+|++||..+..........++ +. .......+.. .+...|+|.+.+..-
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~-~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPP-QDTAPYSCHVQHSSL   84 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECT-TCCSCEEEEEEETTC
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCC-CCCCEEEEEEEECCC
Confidence            357899999999996 764 89999999987644332222222 22 2223333444 566789999998754

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.75  E-value=3.8e-05  Score=61.45  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             eeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEc------cCC---------CCEEEeecCCccceEEEEEEc
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPL------QET---------DEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~------~~~---------~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      +++.|....+.+|++++|.|..+. ....+.||+.  ++.+      ...         .+.... ......  ..|+|.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~L~I~   77 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVS-RSTTED--FPLRLL   77 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEEC-CSSSSB--CCEEES
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEe-cCCCCE--EEEEEC
Confidence            356688899999999999999743 3467999983  2111      000         111111 111111  359999


Q ss_pred             ccCCCCCeEEEEEEEc
Q psy2775          78 SIKKREEGVYTVVAKN   93 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~   93 (785)
                      +++.+|+|.|.|.+..
T Consensus        78 ~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          78 SAAPSQTSVYFCASSY   93 (112)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCHHHCEEEEEeecC
Confidence            9999999999998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.75  E-value=9.3e-05  Score=57.06  Aligned_cols=70  Identities=14%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee--EEeeCCe-EEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR--EIFDGEN-IILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~--~~~~~~~-~~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ...++..+|.|.+.|+ |.. .|+|++||.++..+....  ....++. ..+....+.. ++...|+|.+.+..-.
T Consensus        15 ~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~-~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          15 QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVP-RSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCC-CTTCEEEEEEECTTCS
T ss_pred             cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcC-CCCCEEEEEEEECCCC
Confidence            4456778999999996 554 899999999886542211  1112222 3334445566 7888899999987543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.74  E-value=7.7e-05  Score=59.33  Aligned_cols=73  Identities=18%  Similarity=0.274  Sum_probs=52.1

Q ss_pred             cccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--CEEc---------------c-cCCCEEEEEeCcEEEEEEccCCCC
Q psy2775         419 SVPLQDVKVSRDEKASFEIELTKGDALVKWYKD--GKEI---------------A-FSENVTLSIDGKKQKLIIFSAGLE  480 (785)
Q Consensus       419 ~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--~~~~---------------~-~~~~~~~~~~~~~~~L~i~~~~~~  480 (785)
                      ...|....+.+|++++|.|........+.||+.  |+..               . ...............|+|.+++.+
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   84 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPS   84 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGG
T ss_pred             EEeCCeEEEcCCCCEEEEEEECCCcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHh
Confidence            345667778899999999998776677999982  2110               0 011222233455788999999999


Q ss_pred             CcEEEEEEEee
Q psy2775         481 DAGEYSCRVGD  491 (785)
Q Consensus       481 d~G~Y~C~a~n  491 (785)
                      |+|.|.|.+..
T Consensus        85 Dsa~YyCa~~~   95 (110)
T d2aq2a1          85 QTSVYFCASGG   95 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             hCEEEEEeeCC
Confidence            99999998765

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=6.5e-05  Score=57.15  Aligned_cols=72  Identities=19%  Similarity=0.263  Sum_probs=52.7

Q ss_pred             CCcccccCCCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775         415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD  491 (785)
Q Consensus       415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  491 (785)
                      .|.+...+.. .|..|++++|.|........+.|+|+|....    ...........+.|.+++..|+|.|+|....
T Consensus         4 kPsLsa~P~~-~V~~G~~VTL~C~~~~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~   75 (93)
T d1olla2           4 TPTLSVHPGP-EVISGEKVTFYCRLDTATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSY   75 (93)
T ss_dssp             CCEEEEESCS-EEETTCEEEEEEECSSSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEECEE
T ss_pred             CCEEEEeCCC-cccCCCcEEEEECCCCCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEeEC
Confidence            4555555543 5789999999999877778899999875322    1222234567899999999999999997543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.74  E-value=0.00013  Score=56.36  Aligned_cols=77  Identities=17%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             CCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce--EEEeCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775         111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ--ITSEKNTHTLTLIQCSTKDKGRYSVKVTNK  188 (785)
Q Consensus       111 ~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  188 (785)
                      ...|.+...+ ...+..|++|+|.|... .+...+.|+|+|.......  .........+.|..+...|+|.|+|.....
T Consensus         4 ~pkPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           4 YEKPSLSAQP-GPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SCCCEEEEES-CSEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCCEEEEeC-CCcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            3567776665 34678999999999865 3566899999986544322  233445567888888999999999987644


Q ss_pred             C
Q psy2775         189 E  189 (785)
Q Consensus       189 ~  189 (785)
                      .
T Consensus        82 ~   82 (99)
T d1nkra2          82 D   82 (99)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.74  E-value=5.3e-05  Score=58.80  Aligned_cols=75  Identities=12%  Similarity=0.249  Sum_probs=52.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .+.....++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt--~yL~   82 (117)
T d1jpth1           5 VESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNT--AYLQ   82 (117)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccce--EEec
Confidence            3455678899999999999998643  46788874  211      11 1          23555555444333  4599


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|++.|.|....
T Consensus        83 m~~L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          83 MNSLRAEDTAVYYCARDT  100 (117)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ccccCCCCceEEEEeecC
Confidence            999999999999997543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.74  E-value=6.4e-05  Score=58.63  Aligned_cols=75  Identities=11%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  -.+.|+|.  ++.      |. .          ..|+.+..+...+.  ..|+
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t--~~L~   81 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNT--AYLE   81 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTE--EEEE
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCcee--Eeec
Confidence            4566788999999999999988643  46789874  221      11 1          13555555443333  4599


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|++.|.|....
T Consensus        82 m~sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          82 LSSLTSEDSAVYYCARSS   99 (117)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             ccccCCCcceEEEEeecc
Confidence            999999999999997543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=5.4e-05  Score=58.75  Aligned_cols=74  Identities=9%  Similarity=0.299  Sum_probs=52.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc----------CCCCEEEeecCCccceEEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ----------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+.....++.|++++|.|+++|...  -.+.|++.  |+.      +.          -..|+.+..+...+.  ..|+|
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~--~~L~~   82 (117)
T d1c5db1           5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQ--VFLKM   82 (117)
T ss_dssp             EEECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTE--EEEEE
T ss_pred             eeECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccce--eeccc
Confidence            3455677899999999999998643  46789874  221      11          123666665544433  45999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        83 ~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          83 NSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             CSCCGGGCEEEEEEEC
T ss_pred             cccccCcceEEEEecc
Confidence            9999999999999643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.74  E-value=6.5e-05  Score=60.62  Aligned_cols=75  Identities=13%  Similarity=0.207  Sum_probs=51.6

Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecCC--CCceEEEeC--CE--E-e-------c--CCCCeeEEe--eCCeEEEEEccCC
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NK--P-L-------L--SSPKKREIF--DGENIILELKEAD  622 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~--~-i-------~--~~~~~~~~~--~~~~~~L~i~~~~  622 (785)
                      ++.....+.+.+|++++|.|...+..  ...+.|||.  |+  . |       .  ..+++....  ......|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34444567899999999999998754  346999982  11  1 1       0  112333333  2356899999999


Q ss_pred             CCCCceeEEEEEEc
Q psy2775         623 SETDAGDYKVVATN  636 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n  636 (785)
                      . +|+|.|.|....
T Consensus        84 ~-~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 E-RDEGSYYCACDT   96 (120)
T ss_dssp             G-GGCEEEEEEEEC
T ss_pred             c-cCCceeecCccc
Confidence            9 999999998764

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=3.3e-05  Score=61.03  Aligned_cols=85  Identities=16%  Similarity=0.198  Sum_probs=56.1

Q ss_pred             CCCeeee-cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEEE---eecCCccceEEEEEEcccCCCCC
Q psy2775          11 IPPTFSK-KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVVF---SDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        11 ~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      .+|.+.. .|....+ .++.++|.|.+.|. |. ..|+|++||..+........   ...++.+...+.|+|..-+....
T Consensus         4 ~~P~V~l~~ps~~~~-~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g   82 (107)
T d1mjul2           4 AAPTVSIFPPSSEQL-TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH   82 (107)
T ss_dssp             BCCEEEEECCCHHHH-TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             cCCEEEEECCCHHHh-cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCC
Confidence            3555543 3443333 46789999999886 33 68999999998754321111   12334555667888877665556


Q ss_pred             eEEEEEEEcCCe
Q psy2775          85 GVYTVVAKNREG   96 (785)
Q Consensus        85 G~Y~C~a~~~~~   96 (785)
                      ..|+|.|.+...
T Consensus        83 ~~ytC~V~H~~~   94 (107)
T d1mjul2          83 NSYTCEATHKTS   94 (107)
T ss_dssp             CEEEEEEECTTC
T ss_pred             CEEEEEEEECCC
Confidence            789999998654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.74  E-value=5.9e-05  Score=57.80  Aligned_cols=74  Identities=12%  Similarity=0.257  Sum_probs=51.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-------------CCCCEEEeecCCccceEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-------------ETDEVVFSDQSDMHSYVSI   73 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-------------~~~~~~~~~~~~~~~~~~~   73 (785)
                      .+.....|++|++++|.|+++|...  -.+.|++.  ++.      |.             -..|+.+..+...+.  ..
T Consensus         5 ~eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t--~~   82 (109)
T d2ck0h1           5 QESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSM--LY   82 (109)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTE--EE
T ss_pred             EeECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccce--eE
Confidence            3455678899999999999998643  46788873  211      11             013556665544433  44


Q ss_pred             EEEcccCCCCCeEEEEEEE
Q psy2775          74 VTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        74 L~i~~~~~~D~G~Y~C~a~   92 (785)
                      |+|.+++.+|++.|.|.-.
T Consensus        83 L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          83 LQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             ecccCCCHhHCEEEEEEEc
Confidence            9999999999999999854

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=8.3e-05  Score=57.78  Aligned_cols=74  Identities=12%  Similarity=0.208  Sum_probs=51.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|+++.|.|+++|...  -.+.|++.  ++.      |.           -..|+.+..+.....  ..|+
T Consensus         5 ~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t--~yLq   82 (117)
T d1jnhb1           5 QQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSI--VYLQ   82 (117)
T ss_dssp             EECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccce--eeec
Confidence            3455677899999999999998643  45789873  211      11           124566665544433  3499


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 ~~~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          83 LNSLTSEDSAVYSCSRG   99 (117)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCcceEEEEeec
Confidence            99999999999999653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=0.0001  Score=59.46  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC---CeeEEEECC--EEc-------cCCCCEEEeec----CCccceEEEEEEcccCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE---PDLLWYYNG--EPL-------QETDEVVFSDQ----SDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~---~~i~W~~~~--~~~-------~~~~~~~~~~~----~~~~~~~~~L~i~~~~~   81 (785)
                      .|..+.+.+|++|+|.|+......   ..+.||+..  +..       .......+...    .........|+|.+++.
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA   84 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence            367889999999999999854322   247899842  211       01111100000    00011235799999999


Q ss_pred             CCCeEEEEEEE
Q psy2775          82 REEGVYTVVAK   92 (785)
Q Consensus        82 ~D~G~Y~C~a~   92 (785)
                      +|+|.|.|.+.
T Consensus        85 ~Dsa~YyCa~~   95 (117)
T d1dqta_          85 VDTGLYLCKVE   95 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccCEeEEEEEe
Confidence            99999999876

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.72  E-value=4.3e-05  Score=60.78  Aligned_cols=72  Identities=15%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEE---ec---------CCCCeeEEe--eCCeEEEEEccCCCCCCce
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP---LL---------SSPKKREIF--DGENIILELKEADSETDAG  628 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~---i~---------~~~~~~~~~--~~~~~~L~i~~~~~~~d~G  628 (785)
                      +..+.+.+|++|+|.|.....-...+.|||.  |+.   |.         ...++....  .+....|+|.++.. +|+|
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~-~Dsa   85 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE-SDSA   85 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG-GGCE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc-CCCc
Confidence            4467899999999999987655557999982  211   10         011222221  23457899999999 9999


Q ss_pred             eEEEEEEcC
Q psy2775         629 DYKVVATNE  637 (785)
Q Consensus       629 ~Y~C~a~n~  637 (785)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (110)
T d1ac6a_          86 VYYCALSGG   94 (110)
T ss_dssp             EEEEEEEET
T ss_pred             ccceeecCC
Confidence            999988754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.7e-05  Score=62.39  Aligned_cols=67  Identities=12%  Similarity=0.313  Sum_probs=41.3

Q ss_pred             ceEecCCCeEEEEEEEEecCC---CeeE--EEECCEEc-c---C------------CCCEEEeecCCccceEEEEEEccc
Q psy2775          21 PVYAEENSEVTLEVRLVAVPE---PDLL--WYYNGEPL-Q---E------------TDEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~---~~i~--W~~~~~~~-~---~------------~~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      .+.+..|++|+|.|.++..+.   ..+.  |.+++... .   .            ..+.... .++     .+|+|.++
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~-~~~-----~sL~I~~v   76 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDS-----WTLRLHNL   76 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE-TTT-----TEEEECSC
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEecc-CCe-----EEEEECCC
Confidence            467889999999999854332   2233  44433211 0   0            0111111 111     35999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy2775          80 KKREEGVYTVVAKN   93 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~   93 (785)
                      +.+|+|.|.|.+..
T Consensus        77 ~~~D~G~Y~C~V~~   90 (110)
T d1ncna_          77 QIKDKGLYQCIIHH   90 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ChhHCEEEEEEEEe
Confidence            99999999999963

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.72  E-value=5.7e-05  Score=58.28  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=47.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .+|.+..-+.. ....|+..+|.|.+.|. |. ..|+|++||..+......  .....++.....+.|.   +..++...
T Consensus         3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~---~~~~~~~~   78 (98)
T d1d5mb1           3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLE---TVPRSGEV   78 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEE---CCCCTTCE
T ss_pred             CCCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEee---EcCCCCCE
Confidence            45666553222 23446778899999887 33 589999999987554211  1223333443334443   45678889


Q ss_pred             EEEEEEcCCe
Q psy2775          87 YTVVAKNREG   96 (785)
Q Consensus        87 Y~C~a~~~~~   96 (785)
                      |+|.|.+...
T Consensus        79 ytC~V~H~sl   88 (98)
T d1d5mb1          79 YTCQVEHPSV   88 (98)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEECCC
Confidence            9999998754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.72  E-value=8.4e-05  Score=58.23  Aligned_cols=73  Identities=11%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             CCceEecCCCeEEEEEEEEecCC--CeeEEEECC--EE------ccC----------CCCEEEeecCCccceEEEEEEcc
Q psy2775          19 TKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNG--EP------LQE----------TDEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        19 ~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~--~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      .-.-.|++|++++|.|+++|...  -.+.|+|.-  +.      +..          ..|+.+..+...+.  ..|+|.+
T Consensus         6 sg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~--~~L~i~~   83 (119)
T d1kxvc_           6 SGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNT--AYLQMDS   83 (119)
T ss_dssp             ECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTE--EEEEECS
T ss_pred             ECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcc--eeccccc
Confidence            34567899999999999998643  357898742  11      111          13566665544433  4599999


Q ss_pred             cCCCCCeEEEEEEEc
Q psy2775          79 IKKREEGVYTVVAKN   93 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~   93 (785)
                      ++.+|++.|.|....
T Consensus        84 L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          84 LKPDDTAMYYCKPSL   98 (119)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCcCCcceEeeeecc
Confidence            999999999997653

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.71  E-value=7.1e-05  Score=58.65  Aligned_cols=72  Identities=11%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------ccC----------CCCEEEeecCCccceEEEEEEc
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQE----------TDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      +...-.++.|++++|.|+++|...  -.+.|++.  ++.      +..          ..|+.+..+...+.  ..|+|.
T Consensus         6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt--~~L~i~   83 (120)
T d1dn0b1           6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQ--FSLKLS   83 (120)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTE--EEEEEC
T ss_pred             eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchhe--eccccc
Confidence            444567899999999999998644  45789874  221      111          23566665444333  349999


Q ss_pred             ccCCCCCeEEEEEE
Q psy2775          78 SIKKREEGVYTVVA   91 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a   91 (785)
                      +++.+|++.|.|..
T Consensus        84 ~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          84 SVTAADTAVYYCAR   97 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccccEEEEEe
Confidence            99999999999953

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.71  E-value=8e-05  Score=58.25  Aligned_cols=74  Identities=12%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .+...-.++.|++++|.|+++|...  -.+.|++.  ++.      +. .          ..|+.+..+...+.  ..|+
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt--~yLq   82 (119)
T d1rz7h1           5 VQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDT--GYLE   82 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceE--EEee
Confidence            3455677899999999999998643  46789874  111      11 1          23555655544433  3599


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 m~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          83 LSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             eeccCcccceEEEEeec
Confidence            99999999999999764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.70  E-value=4.9e-05  Score=60.80  Aligned_cols=77  Identities=14%  Similarity=0.305  Sum_probs=51.5

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--E---c---cC---------CCCEEEeecCCccceEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--P---L---QE---------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~---~---~~---------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      .+.+.|..+.+.+|++++|.|.... ....+.||+...  .   |   ..         ..++......+   ....|+|
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I   78 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDD---YHSEMNM   78 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTT---SCEEEEC
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCC---CeEEEEe
Confidence            4567789999999999999998643 335799998532  1   1   00         01111111111   1256999


Q ss_pred             cccCCCCCeEEEEEEEcC
Q psy2775          77 KSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~   94 (785)
                      .+++.+|+|.|.|.+...
T Consensus        79 ~~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          79 SALELEDSAMYFCASSLR   96 (113)
T ss_dssp             CSCCGGGCEEECEEEESS
T ss_pred             cccCcCCceeEEEEeecC
Confidence            999999999999987643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.70  E-value=6.5e-05  Score=58.08  Aligned_cols=72  Identities=7%  Similarity=0.162  Sum_probs=50.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEECC--EE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNG--EP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~--~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|...  ..+.|++.-  +.      +. .          ..|+.+..+...+.  ..|+|
T Consensus         6 eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt--~~L~~   83 (114)
T d1indh1           6 ESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNN--LYLQL   83 (114)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccce--eeeee
Confidence            445677899999999999998643  457898742  11      11 1          13555555444333  34999


Q ss_pred             cccCCCCCeEEEEEE
Q psy2775          77 KSIKKREEGVYTVVA   91 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a   91 (785)
                      .+++.+|++.|.|..
T Consensus        84 ~~L~~eDtAvYYCA~   98 (114)
T d1indh1          84 NSLRSEDTALYFCAS   98 (114)
T ss_dssp             CSCCGGGCEEEEEEC
T ss_pred             eeeccCcccEEEECC
Confidence            999999999999974

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.1e-05  Score=62.50  Aligned_cols=85  Identities=13%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             CCCeeee-cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEE----E--eecCCccceEEEEEEcccCC
Q psy2775          11 IPPTFSK-KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVV----F--SDQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        11 ~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~----~--~~~~~~~~~~~~L~i~~~~~   81 (785)
                      .||.+.. .|....+..|+.++|.|.+.|. |. ..|.|+++|..+.......    .  ...++.+...+.|+|..-..
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            4666654 4556667789999999999886 43 5899999999886543221    1  12344555667888877665


Q ss_pred             CCCeEEEEEEEcCC
Q psy2775          82 REEGVYTVVAKNRE   95 (785)
Q Consensus        82 ~D~G~Y~C~a~~~~   95 (785)
                      .....|+|.|.+..
T Consensus        83 ~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          83 KKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeCC
Confidence            56779999999865

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.70  E-value=5.7e-05  Score=58.71  Aligned_cols=73  Identities=15%  Similarity=0.305  Sum_probs=49.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~t--vyL~   82 (118)
T d1nlbh1           5 VQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSAST--AYLQ   82 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTE--EEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCcee--EEee
Confidence            3445577899999999999998643  46789874  211      11 1          23455554443332  4599


Q ss_pred             EcccCCCCCeEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVA   91 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a   91 (785)
                      |.+++.+|++.|.|..
T Consensus        83 ~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          83 INSLKNEDTATYFCAR   98 (118)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             eeecccCcceEEEEee
Confidence            9999999999999954

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.70  E-value=6.7e-05  Score=57.93  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=44.4

Q ss_pred             eeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         569 TVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFD-GEN----IILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       569 ~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      .+..|+..+|.|.+.|+ |.. .|+|++||+++..+.... ...+ ++.    +.|.+.   . ++...|+|.+.+..-
T Consensus        15 ~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~-~~~~~ytC~V~H~sl   89 (99)
T d1uvqa1          15 PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---P-SADEIYDCKVEHWGL   89 (99)
T ss_dssp             CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---C-CTTCCEEEEEECTTS
T ss_pred             cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---C-CCCCEEEEEEEeCCC
Confidence            35567889999999997 554 899999999986542211 1122 222    234443   3 455689999998743

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.70  E-value=7.3e-05  Score=58.40  Aligned_cols=74  Identities=9%  Similarity=0.264  Sum_probs=51.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCCC---eeEEEEC--CEEc------c----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPEP---DLLWYYN--GEPL------Q----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~~---~i~W~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|....   .+.|+|.  ++.+      .          ...|+.+..+...+.  ..|+
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt--~~L~   82 (119)
T d1ncwh1           5 QQSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQ--FFLQ   82 (119)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTE--EEEE
T ss_pred             EeECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccce--eecc
Confidence            34556788999999999999987542   4688863  3221      1          123556665544443  3599


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 ~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          83 LNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccccCCceEEEEeEe
Confidence            99999999999999744

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.00011  Score=59.30  Aligned_cols=70  Identities=11%  Similarity=0.145  Sum_probs=47.5

Q ss_pred             eeeeeeecCeEEEEEEEecCCCC---ceEEEeC--CEE--ec----C-------CCC--eeEEeeCCeEEEEEccCCCCC
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAP---SIVWFRN--NKP--LL----S-------SPK--KREIFDGENIILELKEADSET  625 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~--~~~--i~----~-------~~~--~~~~~~~~~~~L~i~~~~~~~  625 (785)
                      ....+.+|++++|.|.....-.+   .+.|||.  |+.  +.    .       .++  ......+....|+|.+++. +
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~   85 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA-V   85 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG-G
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc-c
Confidence            35578899999999998643322   4789982  221  10    0       011  1223345678999999999 9


Q ss_pred             CceeEEEEEEc
Q psy2775         626 DAGDYKVVATN  636 (785)
Q Consensus       626 d~G~Y~C~a~n  636 (785)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998863

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.6e-05  Score=60.91  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=44.5

Q ss_pred             eeeeeecCeEEEEEEEecCCC---CceEEE--eCCEE-ec-----------CCCC--eeEEeeCCeEEEEEccCCCCCCc
Q psy2775         567 EKTVKEKGTIRLMAKVKASPA---PSIVWF--RNNKP-LL-----------SSPK--KREIFDGENIILELKEADSETDA  627 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~---p~v~W~--~~~~~-i~-----------~~~~--~~~~~~~~~~~L~i~~~~~~~d~  627 (785)
                      .+.+..|++++|.|.....+.   ..+.|+  +++.. +.           .+.+  .+.....+..+|.|.+++. +|+
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~-~D~   81 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQI-KDK   81 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCG-GGC
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCCh-hHC
Confidence            457888999999999864332   234444  43221 10           0111  1122334556899999999 999


Q ss_pred             eeEEEEEEcC
Q psy2775         628 GDYKVVATNE  637 (785)
Q Consensus       628 G~Y~C~a~n~  637 (785)
                      |.|.|.+...
T Consensus        82 G~Y~C~V~~~   91 (110)
T d1ncna_          82 GLYQCIIHHK   91 (110)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEec
Confidence            9999998633

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.68  E-value=0.0001  Score=57.52  Aligned_cols=75  Identities=9%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|...  -.+.|++.  |+.      |. .          ..|+.+..+...+.  ..|+|
T Consensus         6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt--~~L~~   83 (118)
T d2fbjh1           6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNS--LYLQM   83 (118)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCE--EEEEE
T ss_pred             eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccce--eeccc
Confidence            445678899999999999998643  35788873  211      11 1          23555555444333  45999


Q ss_pred             cccCCCCCeEEEEEEEcC
Q psy2775          77 KSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~~   94 (785)
                      .+++.+|++.|.|.....
T Consensus        84 ~sL~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          84 SKVRSEDTALYYCARLHY  101 (118)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             cccCCCcceEEEeeEecC
Confidence            999999999999986543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.68  E-value=0.00014  Score=57.66  Aligned_cols=75  Identities=9%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .+.....++.|++++|.|+++|...  -.+.|++.  |+.      |. .          ..|+.+..+.....  ..|+
T Consensus         5 ~eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t--~yL~   82 (135)
T d1ieha_           5 QASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNT--LYLQ   82 (135)
T ss_dssp             EEECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCC--EEEE
T ss_pred             eeECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCce--eEec
Confidence            3445677899999999999998643  45789874  211      11 1          23556665544433  3499


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|++.|.|....
T Consensus        83 i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          83 MNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             EESCCSSSCEEEEEEEBS
T ss_pred             EeeeCcccceeeEEEEec
Confidence            999999999999997654

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.67  E-value=5.8e-05  Score=58.67  Aligned_cols=74  Identities=8%  Similarity=0.227  Sum_probs=50.5

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------ccC----------CCCEEEeecCCccceEEEEEEc
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQE----------TDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      +.....++.|++++|.|+++|..-  -.+.|++.  |+.      +..          ..|+.+..+...+.  ..|+|.
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~--~~L~~~   83 (116)
T d1a2yb_           6 ESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQ--VFLKMN   83 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTE--EEEEEC
T ss_pred             eECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCce--EEccee
Confidence            445567899999999999998643  45788874  221      111          12445554433333  459999


Q ss_pred             ccCCCCCeEEEEEEEc
Q psy2775          78 SIKKREEGVYTVVAKN   93 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~   93 (785)
                      +++.+|++.|.|.-..
T Consensus        84 ~l~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          84 SLHTDDTARYYCARER   99 (116)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             eeeeccceEEEEEEeC
Confidence            9999999999998554

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.67  E-value=1.6e-06  Score=67.21  Aligned_cols=73  Identities=15%  Similarity=0.297  Sum_probs=47.3

Q ss_pred             ceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEc------------cCCCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          21 PVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPL------------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .+.|++|++|+|+|...+ ....+.||+.  ++.+            ....++.+..+...  ....|+|.+++.+|+|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSK--KSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGG--TBCCBCCSSCCSTTCSC
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcc--eecccCcCCCCcccCEE
Confidence            467999999999998753 3457999984  2211            01112222211111  12459999999999999


Q ss_pred             EEEEEEcCCe
Q psy2775          87 YTVVAKNREG   96 (785)
Q Consensus        87 Y~C~a~~~~~   96 (785)
                      |.|.+....+
T Consensus        79 YyCA~~~~~g   88 (96)
T d1ymmd1          79 YFCATDTTSG   88 (96)
T ss_dssp             CEEEEEETTS
T ss_pred             EeEeEecCCC
Confidence            9999875443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=0.00042  Score=48.79  Aligned_cols=87  Identities=14%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             cCCceEecCCCeEEEEEEEEec-CCCeeEEEECCE----EccCCCCE--EEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGE----PLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~----~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      .-+...+..|+.+.|.|-+.=- -.|.++|.|-+.    ++......  .....++.  ....|.+..+-.+|.|.|+|.
T Consensus         9 R~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~ni--s~FvLhF~pvl~sDnGsYrCS   86 (104)
T d1xaua_           9 RNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSV--PVFVLHFKPIHLSDNGSYSCS   86 (104)
T ss_dssp             TTEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSS--CEEEEEETTCCGGGCEEEEEE
T ss_pred             ecceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCe--eEEEEEeeeeeecCCCceEEe
Confidence            3456788999999999998532 457899998443    23322232  22223322  335699999999999999999


Q ss_pred             EEcCCeeEE-EEeeEEE
Q psy2775          91 AKNREGEAK-MDIPVKV  106 (785)
Q Consensus        91 a~~~~~~~~-~~~~v~v  106 (785)
                      |.-..+-.. .++++.|
T Consensus        87 anf~s~vieSHSvti~V  103 (104)
T d1xaua_          87 TNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEETTEEEECCCEEEEE
T ss_pred             cCCChhheecceEEEEe
Confidence            986655433 3444444

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=7.4e-05  Score=58.88  Aligned_cols=73  Identities=7%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             cCCceEecCCCeEEEEEEEEecC--CCeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ++....++.|++|+|.|+++|..  .-.+.|++.  |+.      +.           -..|+.+..+...+.  ..|+|
T Consensus         6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~--~~L~i   83 (119)
T d1qnzh_           6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSST--VYLEF   83 (119)
T ss_dssp             EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccce--eeeee
Confidence            44456888999999999998753  245789874  221      11           113555554443332  35999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        84 ~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          84 SRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             EEECGGGCEEEEEEEC
T ss_pred             cccCccceeEEEEEEe
Confidence            9999999999999654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.66  E-value=4.3e-05  Score=60.14  Aligned_cols=73  Identities=10%  Similarity=0.226  Sum_probs=50.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC----CeeEEEEC--CEE------ccCC----------CCEEEeecCCccceEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYN--GEP------LQET----------DEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~--~~~------~~~~----------~~~~~~~~~~~~~~~~~L~   75 (785)
                      ++....++.|++++|.|+++|...    -.+.|++.  |+.      +..+          .|+.+..+...+.  ..|+
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~--~~L~   83 (120)
T d1ai1h1           6 ESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNK--FFIQ   83 (120)
T ss_dssp             EECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTE--EEEE
T ss_pred             eECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccce--eecc
Confidence            445667899999999999998642    24689874  221      1111          3555555444433  3499


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        84 ~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          84 LISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             ESSCCGGGCEEEEEEEE
T ss_pred             eeeeeccceeEEEEEec
Confidence            99999999999999743

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=9.5e-05  Score=57.70  Aligned_cols=66  Identities=21%  Similarity=0.262  Sum_probs=45.7

Q ss_pred             cCCcEEEEEEEeccCC--CeEEEeECCEEcccceE-----EEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeE
Q psy2775         127 EGESAVLSVQVGGEPS--PKVEWYKDGKLIKDRQI-----TSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTV  192 (785)
Q Consensus       127 ~G~~v~l~C~~~g~p~--~~v~W~~~g~~~~~~~~-----~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  192 (785)
                      .++.++|.|.+.|+.+  ..|+|++||..+.....     ...++    .+.|.|..-..+....|+|+|.+.....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   95 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS   95 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccE
Confidence            4567899999988633  48999999998764321     11222    2456776656567789999999876433

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=7.5e-05  Score=58.14  Aligned_cols=74  Identities=5%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L   74 (785)
                      +.++....++.|++++|.|+++|...  -.+.|++.  ++.      +. .          ..|+.+..+...+.  ..|
T Consensus         4 L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t--~~L   81 (118)
T d2jelh1           4 LAQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSST--AYM   81 (118)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTE--EEE
T ss_pred             eEeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcce--Eee
Confidence            34566778899999999999998654  35788873  221      11 1          13445554433322  459


Q ss_pred             EEcccCCCCCeEEEEEE
Q psy2775          75 TIKSIKKREEGVYTVVA   91 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a   91 (785)
                      +|.+++.+|++.|.|.-
T Consensus        82 ~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          82 ELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             cccccccCcceeeeEEE
Confidence            99999999999999954

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.66  E-value=9.3e-05  Score=57.89  Aligned_cols=73  Identities=10%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEECC--EE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNG--EP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~--~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|...  ..+.|++.-  +.      +. .          ..|+.+..+...+.  ..|+|
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t--~yLq~   83 (121)
T d2p49b1           6 ESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNT--VYLQM   83 (121)
T ss_dssp             EEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTE--EEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceE--EEEEe
Confidence            344567899999999999998633  457888742  11      11 1          12555555444333  35999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        84 ~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          84 DSLKPEDTATYYCAAG   99 (121)
T ss_dssp             CSCCGGGCEEEEEEES
T ss_pred             eeccccceeEEeeecc
Confidence            9999999999999864

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=7.1e-05  Score=58.47  Aligned_cols=74  Identities=7%  Similarity=0.205  Sum_probs=51.0

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt--~~L~   82 (119)
T d1eapb1           5 QESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSST--AYMQ   82 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTE--EEEE
T ss_pred             EeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcce--EEee
Confidence            4556678899999999999998743  45789874  221      11 1          12455554433332  4599


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 ~~sL~~eDTAvYYCAr~   99 (119)
T d1eapb1          83 LNSLTSEDSAVYFCKRS   99 (119)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             eecccCCcceEEEEEEe
Confidence            99999999999999643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.66  E-value=0.00011  Score=57.29  Aligned_cols=75  Identities=12%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +.+.....++.|++++|.|+++|...  -.+.|++.  |+.      +.           -..++.+..+...+.  ..|
T Consensus         4 L~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t--~yL   81 (118)
T d1ct8b1           4 LLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSST--AYM   81 (118)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTE--EEE
T ss_pred             EEeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccce--EEe
Confidence            34556788999999999999998643  45788763  221      11           113455554433332  459


Q ss_pred             EEcccCCCCCeEEEEEEE
Q psy2775          75 TIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~   92 (785)
                      .|.+++.+|++.|.|...
T Consensus        82 ~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          82 QFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             cccccCCCcceEEEEeee
Confidence            999999999999999754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=0.00016  Score=54.58  Aligned_cols=78  Identities=19%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCC--CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      ||.+..-.   ....++.++|.|.+.|+.+  ..|+|+++|+.+......  ...+.++.....+.|.|..-   +...|
T Consensus         3 pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~y   76 (89)
T d2mhaa1           3 SPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYY   76 (89)
T ss_dssp             CCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTC
T ss_pred             CCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEE
Confidence            55554421   2234678999999999733  578999999987654322  23344445555677777643   34479


Q ss_pred             EEEEEcCC
Q psy2775          88 TVVAKNRE   95 (785)
Q Consensus        88 ~C~a~~~~   95 (785)
                      +|.|.+..
T Consensus        77 tC~V~H~~   84 (89)
T d2mhaa1          77 TCHVYHQG   84 (89)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEECC
Confidence            99999865

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.65  E-value=4.3e-05  Score=61.09  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=50.3

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--E---c---cCC---------CCEEEeecCCccceEEEEEEcc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--P---L---QET---------DEVVFSDQSDMHSYVSIVTIKS   78 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~---~---~~~---------~~~~~~~~~~~~~~~~~L~i~~   78 (785)
                      .+.|..+.+.+|++++|.|.... ....+.||+...  .   |   ...         .+.... ..+.  ....|+|.+
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~L~i~~   77 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVS-RIRT--EHFPLTLES   77 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEEC-CSSS--SBCCEEBSS
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceee-cCCC--CceEeeecc
Confidence            46788899999999999999743 345799998421  1   0   000         011111 1111  124599999


Q ss_pred             cCCCCCeEEEEEEEcCC
Q psy2775          79 IKKREEGVYTVVAKNRE   95 (785)
Q Consensus        79 ~~~~D~G~Y~C~a~~~~   95 (785)
                      ++.+|+|.|.|.+....
T Consensus        78 ~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          78 ARPSHTSQYLCASSENI   94 (112)
T ss_dssp             CCTTTCSEEEEEEECSS
T ss_pred             ccccccccEEEEEecCC
Confidence            99999999999887543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.65  E-value=0.00013  Score=57.70  Aligned_cols=73  Identities=12%  Similarity=0.228  Sum_probs=51.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      ++....++.|++++|+|+++|...  -.+.|++.  ++.      +.           -..|+.+..+...+.  ..|+|
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t--~yL~~   83 (127)
T d2fx7h1           6 QSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTST--AYLEL   83 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccce--Eeeee
Confidence            445567889999999999998633  45788863  211      11           124566665554443  34999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          84 NSLRPEDTAVYYCARE   99 (127)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCcccceEEEEeec
Confidence            9999999999999764

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=5.6e-05  Score=61.07  Aligned_cols=76  Identities=11%  Similarity=0.123  Sum_probs=48.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCCC---eeEEEECCE--E---c----cCCCCEEEe----ecCCccceEEEEEEcccCC
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPEP---DLLWYYNGE--P---L----QETDEVVFS----DQSDMHSYVSIVTIKSIKK   81 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~~---~i~W~~~~~--~---~----~~~~~~~~~----~~~~~~~~~~~L~i~~~~~   81 (785)
                      .|..+.+.+|++|+|.|........   .+.||+...  .   +    ....+....    ...........|+|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3678889999999999998533222   588998532  1   1    000000000    0111122346799999999


Q ss_pred             CCCeEEEEEEEc
Q psy2775          82 REEGVYTVVAKN   93 (785)
Q Consensus        82 ~D~G~Y~C~a~~   93 (785)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998864

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=8e-05  Score=56.32  Aligned_cols=73  Identities=15%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCCCeeEEEE-CCEEc-cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPL-QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~-~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      ...|+.+.+.+|+++.|.|.++ .|...++-++ ++..+ .....+..+...+       ++|.+++..|.|.|.|.|..
T Consensus         9 ~~~p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~G-------f~I~~~~~~~~g~y~C~a~~   80 (95)
T d1fltx_           9 SEIPEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKG-------FIISNATYKEIGLLTCEATV   80 (95)
T ss_dssp             CSSCEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTE-------EEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCC-------EEEeCCCcccCeEEEEEEEE
Confidence            3446679999999999999986 4776665444 66554 4455555554443       88999999999999999986


Q ss_pred             CCe
Q psy2775          94 REG   96 (785)
Q Consensus        94 ~~~   96 (785)
                      ...
T Consensus        81 ~g~   83 (95)
T d1fltx_          81 NGH   83 (95)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.64  E-value=9.7e-05  Score=58.35  Aligned_cols=74  Identities=12%  Similarity=0.260  Sum_probs=51.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEECC--EE------ccC-----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNG--EP------LQE-----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~--~~------~~~-----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +...-.|+.|++++|.|+++|...  -.+.|++..  +.      |..           ..|+.+..+...+.  ..|+|
T Consensus         5 esG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t--~yLq~   82 (124)
T d1zvya1           5 ESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNM--AYLRM   82 (124)
T ss_dssp             EECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTE--EEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccce--eecee
Confidence            445567899999999999998643  467898742  11      211           23455555443333  45999


Q ss_pred             cccCCCCCeEEEEEEEc
Q psy2775          77 KSIKKREEGVYTVVAKN   93 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~   93 (785)
                      .+++.+|++.|.|....
T Consensus        83 ~sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          83 DSVKSEDTAIYTCGATR   99 (124)
T ss_dssp             CSCCGGGCEEEEEEECS
T ss_pred             ccccCCcceEEEEeecc
Confidence            99999999999997653

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.63  E-value=0.0001  Score=57.49  Aligned_cols=74  Identities=8%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .+...-.++.|++++|.|+++|...  -.+.|++.  ++.      +. .          ..|+.++.+...+.  ..|+
T Consensus         5 ~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt--~~L~   82 (120)
T d1ad9b1           5 VQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNT--AYME   82 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceE--Eecc
Confidence            3455677999999999999998643  45788873  211      11 1          24555665544443  3599


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          83 LSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCCCcceEEEEEEc
Confidence            99999999999999754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.63  E-value=0.0001  Score=58.10  Aligned_cols=74  Identities=11%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             ecCCceEecCCCeEEEEEEEEecC--CCeeEEEEC--CEEc------c-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYN--GEPL------Q-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|..  ...+.|++.  ++.+      . .          ..|+.+..+...+.  ..|+
T Consensus         5 ~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t--~~L~   82 (121)
T d1j05b_           5 QQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNT--AYLQ   82 (121)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCce--eeec
Confidence            355667899999999999998753  346789874  2211      1 1          12444443332222  4599


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          83 LTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccCcCcceEEEeEee
Confidence            99999999999999764

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.63  E-value=0.0001  Score=58.46  Aligned_cols=75  Identities=9%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  -.+.|++.  ++.      |.           -..|+.+..+...+.  ..|+
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~--vyL~   82 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNT--AFMY   82 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTE--EEEE
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcce--Eeee
Confidence            4566778899999999999998643  35788873  221      11           123555655444333  4599


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|++.|.|....
T Consensus        83 l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          83 LNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             eeccCcccceEEEEeeeC
Confidence            999999999999998653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.63  E-value=0.00012  Score=57.68  Aligned_cols=73  Identities=8%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|+++.|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+
T Consensus         4 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt--~yL~   81 (126)
T d1lmka1           4 QQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNI--AYMQ   81 (126)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccE--EEee
Confidence            4566788999999999999998644  35788873  211      11 1          24555655444333  3599


Q ss_pred             EcccCCCCCeEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVA   91 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a   91 (785)
                      |.+++.+|++.|.|..
T Consensus        82 m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          82 LSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ecccCCCcceEEEEee
Confidence            9999999999999964

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.62  E-value=0.0002  Score=55.94  Aligned_cols=74  Identities=8%  Similarity=0.182  Sum_probs=50.7

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEEc------c---C----------CCCEEEeecCCccceEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEPL------Q---E----------TDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~~------~---~----------~~~~~~~~~~~~~~~~~~L   74 (785)
                      ++....++.|++++|.|+++|...  -.+.|++.  |+.+      .   .          ..|+.+..+...+.  ..|
T Consensus         6 esG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~--~~L   83 (120)
T d1dlfh_           6 ESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRR--VYL   83 (120)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTE--EEE
T ss_pred             eECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccce--ecc
Confidence            344566899999999999998643  46789873  2211      0   0          13555555444333  359


Q ss_pred             EEcccCCCCCeEEEEEEEc
Q psy2775          75 TIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +|.+++.+|++.|.|....
T Consensus        84 ~~~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          84 QMNTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             EECSCCGGGCEEEEEEEEB
T ss_pred             ceeeccCCCceEEEeeEec
Confidence            9999999999999997643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.62  E-value=0.00015  Score=57.52  Aligned_cols=76  Identities=11%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +.++....++.|+++.|.|+++|...  -.+.|++.  ++.      +.           -..|+.+..+...+.  ..|
T Consensus         3 L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~t--v~L   80 (130)
T d1rhhb1           3 LEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATST--AYM   80 (130)
T ss_dssp             EEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTE--EEE
T ss_pred             EeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccE--EEE
Confidence            44566778899999999999988633  45788873  221      11           123666666554443  459


Q ss_pred             EEcccCCCCCeEEEEEEEc
Q psy2775          75 TIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +|.+++.+|++.|.|....
T Consensus        81 ~~~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          81 ELTNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             EeeccCCCCcEEEEEEeec
Confidence            9999999999999998654

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=4.5e-05  Score=59.48  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             CCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          26 ENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        26 ~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      ..+.++|.|.+.|. | ...|+|+++|..+..... ......++.+...+.|+|..-+......|+|.|.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            46789999999986 4 368999999987654221 1133455566777889987766556778999999864

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.62  E-value=0.00014  Score=57.50  Aligned_cols=75  Identities=9%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .+.....++.|++++|.|+++|...  -.+.|++.  ++.      +.           -..|+.+..+...+.  ..|+
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t--~yL~   82 (128)
T d2nxyd1           5 VESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTST--VYLE   82 (128)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCce--EEee
Confidence            3455677899999999999998644  34678763  111      11           124666666554443  3499


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|++.|.|....
T Consensus        83 ~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          83 LRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             ECSCCGGGCEEEEEEEEE
T ss_pred             eeeccccCceEEEEeEEe
Confidence            999999999999998754

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00021  Score=54.66  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=51.6

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEEEe-ecCCccceEEEEEEcccCCCCCeEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVVFS-DQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .||.+....   ....|+.++|.|.+.|+ |. ..|.|++||..+......... ..++.....+.|.+.   ..|...|
T Consensus         2 ~PP~V~v~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~---~~~~~~y   75 (94)
T d1t7va1           2 DPPSVVVTS---HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVP---PQDTAPY   75 (94)
T ss_dssp             BCCEEEEEE---EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEEC---TTCCSCE
T ss_pred             cCCEeEEec---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeC---CCCCCEE
Confidence            356665422   22358899999999997 43 589999999987654333322 233334444555554   4566789


Q ss_pred             EEEEEcCCe
Q psy2775          88 TVVAKNREG   96 (785)
Q Consensus        88 ~C~a~~~~~   96 (785)
                      +|.+.+...
T Consensus        76 tC~V~H~sl   84 (94)
T d1t7va1          76 SCHVQHSSL   84 (94)
T ss_dssp             EEEEEETTC
T ss_pred             EEEEEECCC
Confidence            999998653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=7.8e-06  Score=65.08  Aligned_cols=67  Identities=9%  Similarity=0.081  Sum_probs=44.3

Q ss_pred             eecCCeEEEEEEEec-CCCC-ceEEeECCEEeeeccccccch-----------hhhcccccceeeeeeceEEEEEEeccc
Q psy2775         706 VKKGEDLKIEVRFKA-LPPP-KAEWTVNGTVIVPSKRVKGKA-----------EFIKKLDDLEVKERENAVLEVEVTSDK  772 (785)
Q Consensus       706 ~~~g~~~~l~C~~~g-~P~p-~i~W~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~v~~~~~~~~~c~~~~~~  772 (785)
                      +..|+.++|.|.+.| +|.. .|+|++||+.+..+.......           ...+.|++..-.......|+|+|.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            556889999999999 4655 899999999987764332111           111233332222234679999999854

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.60  E-value=0.00011  Score=57.95  Aligned_cols=74  Identities=12%  Similarity=0.269  Sum_probs=51.5

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L   74 (785)
                      +.++....++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|
T Consensus         4 L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt--~yL   81 (127)
T d1n0xh1           4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT--AYM   81 (127)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTE--EEE
T ss_pred             EEeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceE--EEE
Confidence            34566788999999999999998643  35788873  221      11 1          13455555443332  459


Q ss_pred             EEcccCCCCCeEEEEEE
Q psy2775          75 TIKSIKKREEGVYTVVA   91 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a   91 (785)
                      +|.+++.+|++.|.|.-
T Consensus        82 ~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          82 ELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             EEEccCCCCceEEEEEe
Confidence            99999999999999964

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.60  E-value=0.00022  Score=57.60  Aligned_cols=69  Identities=22%  Similarity=0.188  Sum_probs=48.4

Q ss_pred             eeeeeecCeEEEEEEEecCC--CCceEEEeC--CE-------------Ee-cC---CCCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASP--APSIVWFRN--NK-------------PL-LS---SPKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~-------------~i-~~---~~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      .+++.+|++++|.|.+.|..  ...+.|||.  |+             .. ..   ..++.+..+  .....|+|.++..
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            56778899999999999864  336899982  11             11 01   123444432  3457899999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|+|.|.|.+..
T Consensus        90 -~Dsa~YyCA~~~  101 (123)
T d1hxmb1          90 -QDIATYYCALWE  101 (123)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -ccCcEEEEeeeC
Confidence             999999998753

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.60  E-value=0.00019  Score=57.57  Aligned_cols=75  Identities=9%  Similarity=0.256  Sum_probs=50.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC----CeeEEEEC--CEEc------c----------CCCCEEEeecCCccceEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYN--GEPL------Q----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +.....|++|++++|.|+++|...    ..+.|++.  ++.+      .          ...|+.+..+...+.  ..|+
T Consensus         6 esg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~--~~L~   83 (132)
T d1tjgh1           6 ESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQ--VVLV   83 (132)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTE--EEEE
T ss_pred             eECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccE--EEcc
Confidence            344567899999999999987642    25789974  2111      0          123555554433332  4599


Q ss_pred             EcccCCCCCeEEEEEEEcC
Q psy2775          76 IKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~   94 (785)
                      |.+++.+|++.|.|.....
T Consensus        84 i~~l~~eDtAvYYCAr~~~  102 (132)
T d1tjgh1          84 MTRVSPVDTATYFCAHRRG  102 (132)
T ss_dssp             ECSCCGGGCEEEEEEEECC
T ss_pred             cccCCcccceEEEEEEecC
Confidence            9999999999999986643

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00012  Score=57.55  Aligned_cols=73  Identities=10%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  -.+.|++.  |+.      +.           -..|+.+..+...+.  ..|+
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t--~yL~   82 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNT--AHLQ   82 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcE--EEEe
Confidence            4556678899999999999998643  35788873  211      11           124555555444333  4599


Q ss_pred             EcccCCCCCeEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVA   91 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a   91 (785)
                      |.+++.+|++.|.|..
T Consensus        83 ~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          83 WSSLKPSDTALYYCAR   98 (124)
T ss_dssp             ESSCCGGGCEEEEEEE
T ss_pred             eeccccccceEEEEee
Confidence            9999999999999964

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.59  E-value=0.00042  Score=53.59  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEee-CCeE----EEEEccCCCCCCceeEEEEEEcCCcceE
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFD-GENI----ILELKEADSETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~-~~~~----~L~i~~~~~~~d~G~Y~C~a~n~~g~~~  642 (785)
                      +..|+..+|.|.+.|+ |.. .|+|++||..+..........+ ++.+    .|.|   .. +|...|+|.+....-...
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~-~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TP-EPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CC-CTTCCEEEEEEETTTTEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ec-CCCCEEEEEEEeCCCCCC
Confidence            4568899999999996 654 8999999998754433333333 3332    3444   34 555679999999855444


Q ss_pred             E
Q psy2775         643 H  643 (785)
Q Consensus       643 ~  643 (785)
                      .
T Consensus        91 ~   91 (103)
T d1hdma1          91 A   91 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=5.2e-05  Score=59.28  Aligned_cols=80  Identities=21%  Similarity=0.210  Sum_probs=49.9

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccCC--CeEEEeECCEEcccceE-----EEeCC----EEEEEEcccCCCCcEE
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEPS--PKVEWYKDGKLIKDRQI-----TSEKN----THTLTLIQCSTKDKGR  180 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~--~~v~W~~~g~~~~~~~~-----~~~~~----~~~L~i~~~~~~d~G~  180 (785)
                      .+|.+..-+....-..++.+.|.|.+.|+.+  ..|+|++||..+.....     ...++    .+.|.|..........
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            4555543222222234677999999998533  38999999998875421     11222    2456665544444567


Q ss_pred             EEEEEEcCCee
Q psy2775         181 YSVKVTNKEGT  191 (785)
Q Consensus       181 Y~C~a~n~~g~  191 (785)
                      |+|.+.+....
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999997643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4.9e-05  Score=61.99  Aligned_cols=72  Identities=18%  Similarity=0.239  Sum_probs=47.7

Q ss_pred             eeeeeeeecCeEEEEEEEecC----CC---CceEEEeCCEEe---------------cC--CCCeeEEe--eCCeEEEEE
Q psy2775         565 FEEKTVKEKGTIRLMAKVKAS----PA---PSIVWFRNNKPL---------------LS--SPKKREIF--DGENIILEL  618 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~----P~---p~v~W~~~~~~i---------------~~--~~~~~~~~--~~~~~~L~i  618 (785)
                      +..+++.+|+.|+|.|.....    ..   ..+.|++....-               ..  ..+..+..  ..+..+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            347789999999999998521    11   247898854211               00  11222222  234678999


Q ss_pred             ccCCCCCCceeEEEEEEcC
Q psy2775         619 KEADSETDAGDYKVVATNE  637 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n~  637 (785)
                      .+++. +|+|.|.|.+...
T Consensus        88 ~~v~~-~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARM-SDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCG-GGCEEEEEEEEET
T ss_pred             CCCCh-HHCEEEEEEEEeC
Confidence            99999 9999999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.59  E-value=6.5e-05  Score=57.53  Aligned_cols=67  Identities=10%  Similarity=0.246  Sum_probs=45.6

Q ss_pred             EecCCCeEEEEEEEEec--CCCeeEEEECC--EE------ccC----------CCCEEEeecCCccceEEEEEEcccCCC
Q psy2775          23 YAEENSEVTLEVRLVAV--PEPDLLWYYNG--EP------LQE----------TDEVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        23 ~v~~G~~v~l~C~~~g~--p~~~i~W~~~~--~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      .|+.|++++|.|+++|.  ..-.+.|++.-  +.      +..          ..|+.+..+...+.  ..|+|.+++.+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~--~~L~i~~l~~e   81 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKT--VYLEMNSLEPE   81 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCC--EEEEECSCCGG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeE--EEEeecCCCcc
Confidence            46889999999999875  23457898742  11      111          13556665544443  34999999999


Q ss_pred             CCeEEEEEE
Q psy2775          83 EEGVYTVVA   91 (785)
Q Consensus        83 D~G~Y~C~a   91 (785)
                      |++.|.|..
T Consensus        82 DtAvYyCA~   90 (107)
T d1sjva_          82 DTAVYYCYT   90 (107)
T ss_dssp             GCSEEEEEE
T ss_pred             cceeeeEec
Confidence            999999964

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=4.2e-05  Score=60.12  Aligned_cols=66  Identities=11%  Similarity=0.249  Sum_probs=46.4

Q ss_pred             eccCCcEEEEEEEecc-C-CCeEEEeECCEEcccceEE------EeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         125 ITEGESAVLSVQVGGE-P-SPKVEWYKDGKLIKDRQIT------SEKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       125 ~~~G~~v~l~C~~~g~-p-~~~v~W~~~g~~~~~~~~~------~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      ...++.++|.|.+.|+ | ...|+|++||..+......      ..++    .+.|.|..-..+....|+|.+.+...
T Consensus        16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            3456789999999885 4 3589999999998754211      1222    34577776666677789999998653

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00013  Score=57.08  Aligned_cols=74  Identities=12%  Similarity=0.239  Sum_probs=51.7

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|+++.|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+
T Consensus         5 ~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t--~~L~   82 (124)
T d1yedb1           5 QQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSST--AYMQ   82 (124)
T ss_dssp             EECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTE--EEEE
T ss_pred             EeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcce--EEec
Confidence            3456677899999999999998643  45788873  211      11 1          23555665544443  3499


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        83 ~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          83 LSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             EESCCGGGCEEEEEEEC
T ss_pred             ccccCCCcceEEEeccc
Confidence            99999999999999753

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.57  E-value=6.4e-05  Score=58.77  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             CCeee-ecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFS-KKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~-~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +|.+. ..|.... ..++.++|.|.+.|. |. ..|+|.++|........ ......++.+...+.|+|..-+-.....|
T Consensus         4 ~P~V~l~~ps~~~-~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y   82 (102)
T d1igtb4           4 APQVYVLPPPEEE-MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSY   82 (102)
T ss_dssp             CCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCE
T ss_pred             CCEEEEECCCHHH-hcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEE
Confidence            34443 3443322 357889999999886 43 68999999986543211 11223445566678898877655556689


Q ss_pred             EEEEEcCC
Q psy2775          88 TVVAKNRE   95 (785)
Q Consensus        88 ~C~a~~~~   95 (785)
                      +|.|.+..
T Consensus        83 tC~V~H~~   90 (102)
T d1igtb4          83 SCSVVHEG   90 (102)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99999865

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00013  Score=55.99  Aligned_cols=79  Identities=22%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCC--CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGV   86 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~   86 (785)
                      .||........   ..++.++|.|.+.|+-+  ..|+|+++|..+......  ...+.++.....+.|.+..   ++...
T Consensus         2 ~PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~   75 (95)
T d1k5na1           2 DPPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQR   75 (95)
T ss_dssp             BCCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGG
T ss_pred             cCCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCE
Confidence            35666542211   23568999999999843  578999999987654322  1223333444445565543   44568


Q ss_pred             EEEEEEcCC
Q psy2775          87 YTVVAKNRE   95 (785)
Q Consensus        87 Y~C~a~~~~   95 (785)
                      |+|++.+..
T Consensus        76 ytC~V~H~~   84 (95)
T d1k5na1          76 YTCHVQHEG   84 (95)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECc
Confidence            999999865

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.56  E-value=8.5e-05  Score=59.30  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=49.9

Q ss_pred             ccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--CEE---c-------------ccCCCEEEEEe-CcEEEEEEccCCCC
Q psy2775         420 VPLQDVKVSRDEKASFEIELTKGDALVKWYKD--GKE---I-------------AFSENVTLSID-GKKQKLIIFSAGLE  480 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--~~~---~-------------~~~~~~~~~~~-~~~~~L~i~~~~~~  480 (785)
                      ..|....+.+|++++|.|........+.||+.  ++.   +             ...+++..... .....|+|.+++.+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            34566778899999999987666677999982  211   0             01122332222 23578999999999


Q ss_pred             CcEEEEEEEee
Q psy2775         481 DAGEYSCRVGD  491 (785)
Q Consensus       481 d~G~Y~C~a~n  491 (785)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            99999998764

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.56  E-value=0.00016  Score=56.95  Aligned_cols=74  Identities=7%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+|
T Consensus         6 esG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t--~yL~m   83 (122)
T d1bz7b1           6 ESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNT--LFLQM   83 (122)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTE--EEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccE--eEeee
Confidence            444567889999999999998643  45789874  211      11 1          13555554443333  34999


Q ss_pred             cccCCCCCeEEEEEEEc
Q psy2775          77 KSIKKREEGVYTVVAKN   93 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~   93 (785)
                      .+++.+|++.|.|....
T Consensus        84 ~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          84 TSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             eeecccCceEEEeecCC
Confidence            99999999999997643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.56  E-value=0.00015  Score=55.54  Aligned_cols=78  Identities=12%  Similarity=0.033  Sum_probs=52.8

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      .|.|...| ...|..|++|+|.|... .....+.++|++............ .  .....+.+.|.+++.+|+|.|+|..
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~-~--~~~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEH-H--DGVSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEE-E--TTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeee-c--CCceEEEEEEcccCcccCeEEEEEE
Confidence            57787777 56788999999999964 355678899877422110000000 1  1122356999999999999999988


Q ss_pred             EcC
Q psy2775          92 KNR   94 (785)
Q Consensus        92 ~~~   94 (785)
                      ...
T Consensus        77 ~~~   79 (96)
T d1nkra1          77 SVT   79 (96)
T ss_dssp             EBT
T ss_pred             EcC
Confidence            644

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.9e-05  Score=60.78  Aligned_cols=76  Identities=16%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV   90 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   90 (785)
                      ..|.|...|.. .|..|++|+|.|... .+...+.++|++........... ...+.    +.+.|.+++.+|+|.|+|.
T Consensus         3 PkP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~-~~~~~----a~F~i~~v~~~~~G~Y~C~   75 (96)
T d1ugna1           3 PKPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ-ELVKK----GQFPIPSITWEHTGRYRCY   75 (96)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH-HHHTT----TEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC-CCCCE----EEEEEEecCHHHCCeEEEE
Confidence            36788888874 578999999999953 45567888888753210000000 00111    3489999999999999998


Q ss_pred             EEc
Q psy2775          91 AKN   93 (785)
Q Consensus        91 a~~   93 (785)
                      ...
T Consensus        76 y~~   78 (96)
T d1ugna1          76 YGS   78 (96)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.56  E-value=3.3e-06  Score=65.35  Aligned_cols=71  Identities=17%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             eeeeeecCeEEEEEEEecCCCCceEEEeC--CEEe------------cCCCCeeEEe--eCCeEEEEEccCCCCCCceeE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPL------------LSSPKKREIF--DGENIILELKEADSETDAGDY  630 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~i------------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y  630 (785)
                      ..+|.+|++|+|.|...+. ...+.|||.  |+..            ....++.+..  ......|+|.+++. +|+|.|
T Consensus         2 slsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~Dsa~Y   79 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRA-ADTASY   79 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCS-TTCSCC
T ss_pred             CceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCc-ccCEEE
Confidence            3468899999999987643 447999982  2211            0112222222  23346799999999 999999


Q ss_pred             EEEEEcCCc
Q psy2775         631 KVVATNELG  639 (785)
Q Consensus       631 ~C~a~n~~g  639 (785)
                      .|.+....|
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            999876655

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.55  E-value=0.00043  Score=53.55  Aligned_cols=74  Identities=9%  Similarity=0.123  Sum_probs=51.9

Q ss_pred             ecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775          24 AEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM  100 (785)
Q Consensus        24 v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~  100 (785)
                      +..|+..+|.|.+.|+ |. ..|.|++||..+....... ....++.+...+.|+|..   +|...|+|.+.+.......
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~~p~   91 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDRYTA   91 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTTEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCCCCE
Confidence            3568899999999997 43 6899999999875543332 334455566667787764   3455799999988654443

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.55  E-value=0.00015  Score=57.17  Aligned_cols=73  Identities=11%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+|
T Consensus         6 eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt--~~L~~   83 (126)
T d1dfbh1           6 ESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNS--LYLQM   83 (126)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcE--EEeee
Confidence            344567899999999999998643  35788873  211      11 1          23555555444333  45999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        84 ~~L~~eDtavYYCAr~   99 (126)
T d1dfbh1          84 NSLRAEDMALYYCVKG   99 (126)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eeeccCcceEEEEEec
Confidence            9999999999999754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.55  E-value=7e-05  Score=59.67  Aligned_cols=71  Identities=17%  Similarity=0.273  Sum_probs=47.2

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeC--CE------------Ee-cC---CCCeeEEe-eCCeEEEEEccCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK------------PL-LS---SPKKREIF-DGENIILELKEADSET  625 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~------------~i-~~---~~~~~~~~-~~~~~~L~i~~~~~~~  625 (785)
                      +....+.+|++++|.|...+. ...+.|||.  |+            .. ..   ..++.... .+..+.|+|.++.. +
T Consensus         6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~-~   83 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL-E   83 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG-G
T ss_pred             CCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc-C
Confidence            446678999999999986543 347999983  11            00 00   11122221 23347899999999 9


Q ss_pred             CceeEEEEEEcC
Q psy2775         626 DAGDYKVVATNE  637 (785)
Q Consensus       626 d~G~Y~C~a~n~  637 (785)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (111)
T d2esve1          84 DSGVYFCASSQD   95 (111)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCceEEEeeeCC
Confidence            999999987643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.55  E-value=0.00019  Score=56.45  Aligned_cols=74  Identities=8%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +...-.++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+|
T Consensus         6 eSG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t--~~Lqm   83 (125)
T d1op3h1           6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDF--VYLQM   83 (125)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccce--Eeeee
Confidence            344567899999999999988643  45788873  211      11 1          23556655544433  45999


Q ss_pred             cccCCCCCeEEEEEEEc
Q psy2775          77 KSIKKREEGVYTVVAKN   93 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~   93 (785)
                      .+++.+|++.|.|....
T Consensus        84 ~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          84 HKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             eccCCccceeEeEeecc
Confidence            99999999999998653

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.7e-05  Score=58.45  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFDGEN----IILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      ..+.+++|.|.+.|+ |.. .|+|++||.++..+.... ....++.    +.|.|..-.- .....|+|.+.+.....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w-~~~~~ytC~V~H~~~t~   95 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHW-LSDRTYTCQVTYQGHTF   95 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHH-HTTCCEEEEEEETTEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHc-CCCCEEEEEEEECCEeE
Confidence            456789999999994 766 799999999986543222 2223333    3466654322 23566999999986533

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00023  Score=54.72  Aligned_cols=76  Identities=11%  Similarity=0.103  Sum_probs=50.2

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceE-----EEeCCEEEEEEcccCCCCcEEEEEEEE
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI-----TSEKNTHTLTLIQCSTKDKGRYSVKVT  186 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~a~  186 (785)
                      ..|.+...+. ..+..|++|+|.|... .....+.++|+|........     ........+.|.+++.+|+|.|+|...
T Consensus         3 pkPsLsa~P~-~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           3 IKPTLSAQPS-PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCCEEEeeCC-CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            4566766654 3588999999999864 34568889998875432211     112345679999999999999999876


Q ss_pred             cCC
Q psy2775         187 NKE  189 (785)
Q Consensus       187 n~~  189 (785)
                      ...
T Consensus        81 ~~~   83 (98)
T d1ugna2          81 DSN   83 (98)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=4e-05  Score=59.71  Aligned_cols=70  Identities=10%  Similarity=0.098  Sum_probs=44.5

Q ss_pred             eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGEN----IILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      ..++.++|.|.+.|+ |.. .|.|.+++........... ..++.    +.|+|..-.-  +.|.|+|.+.+..+....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~-~~~g~~s~~S~L~v~~~~w--~~~~ytC~V~H~~~~~~v   93 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV-LQSGLYTLSSNTTVASGTW--PSASVTCLVAHPKSSTAA   93 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE-EETTEEEEEEEEEEETTTT--TTSCCEEEEEEGGGTEEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee-cCCCCEEEEEEEEEchhhc--CCCeEEEEEEeCCCCeee
Confidence            357899999999995 654 8999988864321111111 22222    4566654432  467899999998765443

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.53  E-value=0.00011  Score=58.10  Aligned_cols=73  Identities=10%  Similarity=0.241  Sum_probs=48.1

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC----CeeEEEEC--CEEc------cC----------CCCEEEeecCCccceEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE----PDLLWYYN--GEPL------QE----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      +.....|++|++++|.|.++|..-    ..+.|++.  ++.+      ..          ..|+.+..+...+  ...|+
T Consensus         6 esg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~--~~~L~   83 (123)
T d1r0ah1           6 ESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNN--QAFLN   83 (123)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGT--EEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccce--eEEcc
Confidence            344567899999999999987532    24679873  2211      11          1244444433222  24599


Q ss_pred             EcccCCCCCeEEEEEEE
Q psy2775          76 IKSIKKREEGVYTVVAK   92 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~   92 (785)
                      |.+++.+|++.|.|...
T Consensus        84 i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          84 MMTVETADTAIYYCAQS  100 (123)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             eeecccccceEEeeccc
Confidence            99999999999999743

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.53  E-value=0.00011  Score=57.86  Aligned_cols=88  Identities=8%  Similarity=-0.022  Sum_probs=59.5

Q ss_pred             cccCCCCeeee-cCCceEecCCCeEEEEEEEEecCC--CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCC
Q psy2775           7 ILEGIPPTFSK-KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus         7 ~~~~~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      +-...+|+... .|....+..+..++|.|.+.|.-+  ..|.|+++|..+...... .....++.+...+.|+|..... 
T Consensus         3 ~~~~~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w-   81 (107)
T d1hxmb2           3 LDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-   81 (107)
T ss_dssp             CCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-
T ss_pred             CCCCCCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC-
Confidence            44567777765 456666788899999999988733  578999999876543221 1123444555567788866443 


Q ss_pred             CCeEEEEEEEcCCe
Q psy2775          83 EEGVYTVVAKNREG   96 (785)
Q Consensus        83 D~G~Y~C~a~~~~~   96 (785)
                       ...|+|.|.+...
T Consensus        82 -~~~ytC~V~H~s~   94 (107)
T d1hxmb2          82 -DKEHRCIVRHENN   94 (107)
T ss_dssp             -GSCEEEEEEETTS
T ss_pred             -CCeEEEEEEECCC
Confidence             2379999998654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.53  E-value=0.00017  Score=56.05  Aligned_cols=74  Identities=8%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------ccC----------CCCEEEeecCCccceEEEEEEc
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQE----------TDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      +.....++.|++++|.|+++|...  -.+.|++.  ++.      +..          ..|+.+..+...+.  ..|+|.
T Consensus         6 eSg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt--~~L~i~   83 (118)
T d1lo4h1           6 ETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNI--LTLQMS   83 (118)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTE--EEEEEC
T ss_pred             eECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEecccccee--eeeccc
Confidence            344567889999999999998743  46789874  221      111          12455555443333  359999


Q ss_pred             ccCCCCCeEEEEEEEc
Q psy2775          78 SIKKREEGVYTVVAKN   93 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~~   93 (785)
                      +++.+|++.|.|.-..
T Consensus        84 ~l~~eDtA~YyCAr~~   99 (118)
T d1lo4h1          84 RLRSEDTAIYYCARGT   99 (118)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             cccCCcceEEEecccC
Confidence            9999999999997543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0001  Score=58.16  Aligned_cols=84  Identities=11%  Similarity=0.152  Sum_probs=55.9

Q ss_pred             CCeeee-cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEEEe---ecCCccceEEEEEEcccCCCCCe
Q psy2775          12 PPTFSK-KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVVFS---DQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        12 ~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      +|.+.. .|..... .++.++|.|.+.|. |. ..|+|++||..+.........   ..++.+...+.|+|..-+-....
T Consensus         5 ~P~V~l~~Ps~~~~-~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~   83 (107)
T d1c5cl2           5 APSVFIFPPSDEQL-KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK   83 (107)
T ss_dssp             CCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred             CCEEEEECCCHHHh-cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCC
Confidence            455543 4443333 46789999999887 43 589999999877554322211   22445566788999776655566


Q ss_pred             EEEEEEEcCCe
Q psy2775          86 VYTVVAKNREG   96 (785)
Q Consensus        86 ~Y~C~a~~~~~   96 (785)
                      .|+|.|.+...
T Consensus        84 ~ytC~V~H~~~   94 (107)
T d1c5cl2          84 VYACEVTHQGL   94 (107)
T ss_dssp             EEEEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            89999998654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.53  E-value=0.00014  Score=57.08  Aligned_cols=74  Identities=9%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|..-  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+|
T Consensus         6 esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt--~~L~i   83 (123)
T d1mqkh_           6 ESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNT--LYLQM   83 (123)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTE--EEEEE
T ss_pred             eECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccc--cccce
Confidence            445567889999999999998643  45789873  221      11 1          13455554433322  45999


Q ss_pred             cccCCCCCeEEEEEEEc
Q psy2775          77 KSIKKREEGVYTVVAKN   93 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~   93 (785)
                      .+++.+|++.|.|....
T Consensus        84 ~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          84 SSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             eeeccCcccceeEEecC
Confidence            99999999999997654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.52  E-value=0.00019  Score=57.28  Aligned_cols=71  Identities=14%  Similarity=0.271  Sum_probs=48.2

Q ss_pred             CceEecCCCeEEEEEEEEecCC----CeeEEEEC--CEEc------c----------CCCCEEEeecCCccceEEEEEEc
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPE----PDLLWYYN--GEPL------Q----------ETDEVVFSDQSDMHSYVSIVTIK   77 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~----~~i~W~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~   77 (785)
                      -...+++|++++|.|+++|...    ..+.|++.  ++.+      .          ...|+.+..+...+.  ..|+|.
T Consensus         8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t--~~L~i~   85 (126)
T d1etzb1           8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQ--VFLKIT   85 (126)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTE--EEEEEC
T ss_pred             CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcE--EEccee
Confidence            3457889999999999987532    24679863  2211      1          123555555443332  459999


Q ss_pred             ccCCCCCeEEEEEEE
Q psy2775          78 SIKKREEGVYTVVAK   92 (785)
Q Consensus        78 ~~~~~D~G~Y~C~a~   92 (785)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          86 SVDTSDTATYHCARR  100 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cccccccceEEEEEe
Confidence            999999999999854

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=7.5e-05  Score=58.39  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             CCeee-ecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFS-KKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~-~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +|.+. ..|..... .++.++|.|.+.|. |. ..|+|+++|....... .......++.+...+.|+|..-.....-.|
T Consensus         4 ~P~V~i~~ps~~~~-~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~y   82 (102)
T d1l6xa2           4 EPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF   82 (102)
T ss_dssp             CCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCE
T ss_pred             CCEEEEECcCHHHh-cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEE
Confidence            45443 34443333 47789999999886 43 6899999998754321 112233455566678899887655556689


Q ss_pred             EEEEEcCCe
Q psy2775          88 TVVAKNREG   96 (785)
Q Consensus        88 ~C~a~~~~~   96 (785)
                      +|.|.+...
T Consensus        83 tC~V~H~~l   91 (102)
T d1l6xa2          83 SCSVMHEAL   91 (102)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999998653

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.52  E-value=0.00015  Score=56.93  Aligned_cols=74  Identities=7%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc---C----------CCCEEEeecCCccceEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ---E----------TDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~---~----------~~~~~~~~~~~~~~~~~~L   74 (785)
                      +...-.++.|++++|.|+++|...  -.+.|++.  |+.      +.   .          ..|+.+..+...+.  ..|
T Consensus         6 esg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt--~~L   83 (122)
T d1q9rb1           6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSI--LYL   83 (122)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTE--EEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccce--ecc
Confidence            445567889999999999998643  35789874  221      11   0          13555655444433  349


Q ss_pred             EEcccCCCCCeEEEEEEEc
Q psy2775          75 TIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~~   93 (785)
                      +|.+++.+|++.|.|....
T Consensus        84 ~~~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          84 QMNTLRAEDSATYYCARDH  102 (122)
T ss_dssp             EECSCCGGGCEEEEEEECC
T ss_pred             ceeeeccCcceEEEEEecC
Confidence            9999999999999998643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00016  Score=56.78  Aligned_cols=73  Identities=10%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.-.-.++.|++++|.|+++|...  -.+.|++.  |+.      |. .          ..|+.+..+...+.  ..|+|
T Consensus         6 esg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~--~~L~i   83 (121)
T d1ol0a_           6 ESGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNT--LYLQM   83 (121)
T ss_dssp             EEECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEecccccee--EEeee
Confidence            344567899999999999988642  35788873  221      11 1          13555555443333  45999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          84 NSLRAEDTAVYYCARE   99 (121)
T ss_dssp             CSCCGGGCEEEEEEEC
T ss_pred             eecccccceEEEEEEe
Confidence            9999999999999754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00022  Score=53.79  Aligned_cols=64  Identities=11%  Similarity=0.105  Sum_probs=42.2

Q ss_pred             eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEe-eCCe----EEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIF-DGEN----IILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~-~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      ..++.++|.|.|.|+ |.. .|+|++||+.+..+.... ... .++.    +.|.|.   . .+...|+|.+....
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~-~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---L-GKEQYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---S-STTTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---C-cCCCEEEEEEEECC
Confidence            446789999999997 544 789999999886543321 112 2222    345554   3 34457999998764

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.51  E-value=0.00015  Score=57.96  Aligned_cols=70  Identities=14%  Similarity=0.167  Sum_probs=46.5

Q ss_pred             eeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE--e----cCC---------CCeeEE-eeCCeEEEEEccCCCCCCc
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP--L----LSS---------PKKREI-FDGENIILELKEADSETDA  627 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~--i----~~~---------~~~~~~-~~~~~~~L~i~~~~~~~d~  627 (785)
                      ....+.+|++|+|.|... .....+.|||..  +.  +    ...         .++... ..+..+.|+|.++.. +|+
T Consensus         7 ~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~DS   84 (114)
T d1ogae1           7 KYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK-NPT   84 (114)
T ss_dssp             SEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS-CCC
T ss_pred             CeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc-CCc
Confidence            356789999999999976 344579999832  11  0    000         011111 123456799999999 999


Q ss_pred             eeEEEEEEcC
Q psy2775         628 GDYKVVATNE  637 (785)
Q Consensus       628 G~Y~C~a~n~  637 (785)
                      |.|.|.+...
T Consensus        85 a~YyCa~~~~   94 (114)
T d1ogae1          85 AFYLCASSSR   94 (114)
T ss_dssp             EEEEEEEESS
T ss_pred             eeEEEeeccC
Confidence            9999987643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=7e-05  Score=60.01  Aligned_cols=69  Identities=14%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             eeeeeecCeEEEEEEEecC--CCCceEEEeC--CE---EecC------------CCCeeEEe--eCCeEEEEEccCCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKAS--PAPSIVWFRN--NK---PLLS------------SPKKREIF--DGENIILELKEADSET  625 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~--~~---~i~~------------~~~~~~~~--~~~~~~L~i~~~~~~~  625 (785)
                      ...+.+|++++|.|...+.  ....+.|+|.  +.   .+..            ..++.+..  ..+..+|+|.+++. +
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~-~   86 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV-E   86 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG-G
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc-c
Confidence            4678899999999998653  4457899983  21   1110            01222222  23457899999999 9


Q ss_pred             CceeEEEEEEc
Q psy2775         626 DAGDYKVVATN  636 (785)
Q Consensus       626 d~G~Y~C~a~n  636 (785)
                      |+|.|.|.+..
T Consensus        87 Dsg~Y~Cav~~   97 (113)
T d1smoa_          87 DSGLYQCVIYQ   97 (113)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCceEEEEEEC
Confidence            99999998754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.51  E-value=0.00012  Score=58.13  Aligned_cols=75  Identities=9%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .++....++.|++++|.|+++|...  ..+.|++.  ++.      +. .          ..|+.+..+...+.  ..|+
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t--~yL~   82 (130)
T d1rzga1           5 VQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTST--AYME   82 (130)
T ss_dssp             EECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccce--EEee
Confidence            4556677899999999999987633  46788873  221      11 1          13455555444333  3499


Q ss_pred             EcccCCCCCeEEEEEEEc
Q psy2775          76 IKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~   93 (785)
                      |.+++.+|++.|.|....
T Consensus        83 ~~sL~~eDtA~YYCAr~~  100 (130)
T d1rzga1          83 LSSLRSEDTAVFYCASPY  100 (130)
T ss_dssp             ECSCCGGGCEEEEEEECC
T ss_pred             eeecCCCccEEEEEEEec
Confidence            999999999999998643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.49  E-value=0.00019  Score=56.88  Aligned_cols=74  Identities=11%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.-...++.|++++|.|+++|...  -.+.|++.  ++.      |. .          ..|+.+..+...+.  ..|+|
T Consensus         5 esG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~--~~L~i   82 (126)
T d1rjca1           5 ASGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNT--LYLQM   82 (126)
T ss_dssp             CBCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CE--EEEEE
T ss_pred             eECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceE--EEEEE
Confidence            344567889999999999988633  45789874  221      11 1          13455554433332  44999


Q ss_pred             cccCCCCCeEEEEEEEc
Q psy2775          77 KSIKKREEGVYTVVAKN   93 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~   93 (785)
                      .+++.+|++.|.|....
T Consensus        83 ~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          83 NSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             CSCCGGGCEEEEEEECC
T ss_pred             eccCcccCceeEEEeec
Confidence            99999999999998653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=7.3e-05  Score=58.32  Aligned_cols=70  Identities=10%  Similarity=0.140  Sum_probs=41.3

Q ss_pred             eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775         571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGEN----IILELKEADSETDAGDYKVVATNELGSATH  643 (785)
Q Consensus       571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~  643 (785)
                      ..++.++|.|.+.|+ |.. .|+|.+++...... .......++.    +.|.|..-.-  +.+.|+|.+.+..+....
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~-~~~~~~~~g~ys~~S~L~v~~~~w--~~~~ytC~V~H~~~~~~v   93 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVTSSTW--PSQSITCNVAHPASSTKV   93 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEE-ECCCEEETTEEEEEEEEEECTTTT--TTSCCEEEEEEGGGTEEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeE-ecccccCCCCEEEEEEEEEehhHc--CCceEEEEEEECCCCEEE
Confidence            457899999999996 655 89998877432110 0111123333    3466655432  357899999998765543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00021  Score=54.64  Aligned_cols=66  Identities=12%  Similarity=0.076  Sum_probs=41.5

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEee-CCe-EEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFD-GEN-IILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~-~~~-~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .+..++|.|.+.|+ |.. .|+|++||+.+..+.... ...+ ++. .......+.. .+...|+|.+....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~-~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS-GEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET-TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc-CCCCEEEEEEEECc
Confidence            35689999999998 544 799999999886543221 1121 221 1122222334 45568999999864

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00014  Score=58.71  Aligned_cols=70  Identities=10%  Similarity=0.161  Sum_probs=46.6

Q ss_pred             eeeeeeecCeEEEEEEEecCCCC---ceEEEeCCE----Eec-----CC------CCe--eEEeeCCeEEEEEccCCCCC
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNK----PLL-----SS------PKK--REIFDGENIILELKEADSET  625 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~----~i~-----~~------~~~--~~~~~~~~~~L~i~~~~~~~  625 (785)
                      ....+.+|++++|.|.....-.+   .+.|||...    ++.     .+      .+.  ....++....|+|.++.. +
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~   85 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA-M   85 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG-G
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc-C
Confidence            34567899999999998643323   488998321    110     00      000  112244567899999999 9


Q ss_pred             CceeEEEEEEc
Q psy2775         626 DAGDYKVVATN  636 (785)
Q Consensus       626 d~G~Y~C~a~n  636 (785)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998875

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.48  E-value=0.00037  Score=53.18  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=51.1

Q ss_pred             CCCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEE---EeecCCccceEEEEEEcccCCCCCe
Q psy2775          11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVV---FSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      .||.+......   ..+..++|.|.+.|+ |. ..|.|+++|..+.......   ..+.++.....+.|.+..   +|..
T Consensus         2 vpP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~   75 (94)
T d1hyrc1           2 VPPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQ   75 (94)
T ss_dssp             BCCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGG
T ss_pred             cCCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCC
Confidence            35666542211   235679999999987 33 6899999999886543221   123333444455566553   4455


Q ss_pred             EEEEEEEcCCee
Q psy2775          86 VYTVVAKNREGE   97 (785)
Q Consensus        86 ~Y~C~a~~~~~~   97 (785)
                      .|+|.+.+....
T Consensus        76 ~ytC~V~H~~~~   87 (94)
T d1hyrc1          76 RFTCYMEHSGNH   87 (94)
T ss_dssp             GEEEEEEETTEE
T ss_pred             EEEEEEEECCCC
Confidence            799999987654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.48  E-value=0.00019  Score=55.06  Aligned_cols=81  Identities=12%  Similarity=0.178  Sum_probs=47.6

Q ss_pred             CCeeeecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSKKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +|.+...|.. ....|+.++|.|.+.|+ | ...|.|++||..+..+...  ...+.++.....+.|.+   ..++...|
T Consensus         2 ~P~V~v~p~~-~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~y   77 (97)
T d1uvqb1           2 EPTVTISPSR-TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVY   77 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCE
T ss_pred             CCEEEEecCC-cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEE
Confidence            4555543322 23457788999999887 3 3689999999877543221  12233444444555655   45667799


Q ss_pred             EEEEEcCCe
Q psy2775          88 TVVAKNREG   96 (785)
Q Consensus        88 ~C~a~~~~~   96 (785)
                      +|.+.+...
T Consensus        78 tC~V~H~sl   86 (97)
T d1uvqb1          78 TCHVEHPSL   86 (97)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEEeCCC
Confidence            999998754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.47  E-value=0.00022  Score=54.78  Aligned_cols=70  Identities=17%  Similarity=0.156  Sum_probs=41.9

Q ss_pred             eeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCee-EE-eeCCeE-EEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775         570 VKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR-EI-FDGENI-ILELKEADSETDAGDYKVVATNELGS  640 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~-~~-~~~~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g~  640 (785)
                      ...|+..+|.|.+.|+ |. ..|+|++||+++..+.... .. ..++.+ ......+.. ++...|+|.+.+..-.
T Consensus        13 ~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ytC~V~H~sl~   87 (97)
T d1uvqb1          13 EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTP-QRGDVYTCHVEHPSLQ   87 (97)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCS-CTTCCEEEEEECTTCS
T ss_pred             ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCC-CCCCEEEEEEEeCCCC
Confidence            3457788999999997 54 4899999999876543221 11 122222 223334455 6778899999987543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.47  E-value=0.00017  Score=57.39  Aligned_cols=80  Identities=9%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEc------cCCCCEEEeec-CCc----cceEEEEEEcccC
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPL------QETDEVVFSDQ-SDM----HSYVSIVTIKSIK   80 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~------~~~~~~~~~~~-~~~----~~~~~~L~i~~~~   80 (785)
                      .+.+.|..+.+.+|++++|.|...+.....+.||+.  |+.+      ........... ...    ....+.|+|..++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            456778899999999999999986555567999985  2211      01111110000 000    0001348888899


Q ss_pred             CCCCeEEEEEEEc
Q psy2775          81 KREEGVYTVVAKN   93 (785)
Q Consensus        81 ~~D~G~Y~C~a~~   93 (785)
                      .+|++.|.|....
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            9999999999754

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.47  E-value=0.00014  Score=58.00  Aligned_cols=74  Identities=14%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEECC--EE---c---c----------------CCCCEEEeecCCccceE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNG--EP---L---Q----------------ETDEVVFSDQSDMHSYV   71 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~--~~---~---~----------------~~~~~~~~~~~~~~~~~   71 (785)
                      +...-.+++|++++|.|+++|...  -.+.|++..  +.   +   .                -..|+.+..+...+.  
T Consensus         6 esG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~--   83 (127)
T d1i3ua_           6 ESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNT--   83 (127)
T ss_dssp             EESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTE--
T ss_pred             eECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceE--
Confidence            445667889999999999998633  467898742  11   1   0                012455554433332  


Q ss_pred             EEEEEcccCCCCCeEEEEEEEc
Q psy2775          72 SIVTIKSIKKREEGVYTVVAKN   93 (785)
Q Consensus        72 ~~L~i~~~~~~D~G~Y~C~a~~   93 (785)
                      ..|+|.+++.+|++.|.|....
T Consensus        84 ~~L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          84 VNLQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EEEEECSCCGGGCEEEEEEEES
T ss_pred             EEEeeecccccceeEEEEEEEe
Confidence            4599999999999999998753

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00016  Score=56.63  Aligned_cols=85  Identities=14%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             CeEe-eeeeeeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe-eEEeeCCe----EEEEEccCCCCCCc---
Q psy2775         559 PLFI-ERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFDGEN----IILELKEADSETDA---  627 (785)
Q Consensus       559 p~~~-~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~-~~~~~~~~----~~L~i~~~~~~~d~---  627 (785)
                      |.+. ..+........+.++|.|.+.|+ |.. .|+|.++|..+...... .....++.    +.|.|..-.-  +.   
T Consensus         6 P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW--~~~~~   83 (105)
T d1dn0b2           6 PTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDV--MAGTD   83 (105)
T ss_dssp             CEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC-----CC
T ss_pred             CeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHh--ccCCC
Confidence            4443 23333445557889999999996 765 89999999876543211 11123333    3566654322  23   


Q ss_pred             eeEEEEEEcCCcceEEEE
Q psy2775         628 GDYKVVATNELGSATHGA  645 (785)
Q Consensus       628 G~Y~C~a~n~~g~~~~~~  645 (785)
                      ..|+|.+.+..+....++
T Consensus        84 ~~ytC~V~H~~~~~~~~v  101 (105)
T d1dn0b2          84 EHVVCKVQHPNGNKEKNV  101 (105)
T ss_dssp             CEEEEEEECTTCCEEEEE
T ss_pred             CEEEEEEEECCCCEEeEE
Confidence            369999999877655443

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.47  E-value=0.00022  Score=56.43  Aligned_cols=74  Identities=9%  Similarity=0.204  Sum_probs=51.0

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEECC--EE------cc-C----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNG--EP------LQ-E----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~--~~------~~-~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|...  ..+.|++.-  +.      +. .          ..|+.+..+...+.  ..|+|
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t--~yL~~   83 (127)
T d2fb4h1           6 QSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNT--LFLQM   83 (127)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccE--EEeee
Confidence            344567889999999999998633  457888732  11      11 1          13555555544433  44999


Q ss_pred             cccCCCCCeEEEEEEEc
Q psy2775          77 KSIKKREEGVYTVVAKN   93 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~~   93 (785)
                      .+++.+|++.|.|....
T Consensus        84 ~~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          84 DSLRPEDTGVYFCARDG  100 (127)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             eeeeecceeEEEEEEec
Confidence            99999999999997653

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.00017  Score=58.39  Aligned_cols=74  Identities=12%  Similarity=0.111  Sum_probs=47.9

Q ss_pred             eeeeeeeecCeEEEEEEEec---CCC---CceEEEeCCE----Ee-c----------CCCCeeEEe--eCCeEEEEEccC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKA---SPA---PSIVWFRNNK----PL-L----------SSPKKREIF--DGENIILELKEA  621 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g---~P~---p~v~W~~~~~----~i-~----------~~~~~~~~~--~~~~~~L~i~~~  621 (785)
                      ++.+.+.+|+.|+|.|....   .+.   ..+.|++...    .+ .          ...+.....  ..+..+|+|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            35778999999999999862   111   1456777321    11 0          111222221  234668999999


Q ss_pred             CCCCCceeEEEEEEcCCc
Q psy2775         622 DSETDAGDYKVVATNELG  639 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n~~g  639 (785)
                      +. +|+|.|.|.+....+
T Consensus        87 ~~-~DsG~Y~C~v~~~~~  103 (118)
T d1qfoa_          87 KP-EDSGTYNFRFEISDS  103 (118)
T ss_dssp             CG-GGCEEEEEEEECC-C
T ss_pred             Ch-hHCEEEEEEEEeCCC
Confidence            99 999999999976543

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.46  E-value=0.00011  Score=58.79  Aligned_cols=71  Identities=15%  Similarity=0.331  Sum_probs=49.9

Q ss_pred             cCCCeEEecCCcEEEEEEEeCCCceEEEEE--CCEEc---------------ccCCCEEEEE-eCcEEEEEEccCCCCCc
Q psy2775         421 PLQDVKVSRDEKASFEIELTKGDALVKWYK--DGKEI---------------AFSENVTLSI-DGKKQKLIIFSAGLEDA  482 (785)
Q Consensus       421 ~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~--~~~~~---------------~~~~~~~~~~-~~~~~~L~i~~~~~~d~  482 (785)
                      .|....+.+|++++|.|........+.||+  .++..               ....+..... ......|+|.+++.+|+
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECSTTCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            455677889999999999766666789998  22211               0112222222 23467899999999999


Q ss_pred             EEEEEEEee
Q psy2775         483 GEYSCRVGD  491 (785)
Q Consensus       483 G~Y~C~a~n  491 (785)
                      |.|.|.+..
T Consensus        85 a~YyCA~~~   93 (113)
T d2ntsp1          85 ALYLCASSL   93 (113)
T ss_dssp             EEEEEEEES
T ss_pred             eeeeeeeeC
Confidence            999998865

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.45  E-value=0.00041  Score=54.21  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=47.5

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecC----------CCCeeEEee--CCeEEEEEccCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS----------SPKKREIFD--GENIILELKEADSE  624 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~----------~~~~~~~~~--~~~~~L~i~~~~~~  624 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|.  |+.      |..          ..|+.+..+  .....|.|.+++. 
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~-   87 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA-   87 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc-
Confidence            3468899999999999998655  5789883  211      111          124444443  3456799999999 


Q ss_pred             CCceeEEEEE
Q psy2775         625 TDAGDYKVVA  634 (785)
Q Consensus       625 ~d~G~Y~C~a  634 (785)
                      +|++.|.|..
T Consensus        88 eDtA~YYCAr   97 (120)
T d1dn0b1          88 ADTAVYYCAR   97 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccccEEEEEe
Confidence            9999999943

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.43  E-value=0.00011  Score=57.43  Aligned_cols=75  Identities=8%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             eecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc---C----------CCCEEEeecCCccceEE
Q psy2775          16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ---E----------TDEVVFSDQSDMHSYVS   72 (785)
Q Consensus        16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~---~----------~~~~~~~~~~~~~~~~~   72 (785)
                      +.+.....+++|++++|.|+++|...  -.+.|++.  ++.      +.   .          ..|+.+..+...+.  .
T Consensus         4 L~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt--~   81 (121)
T d1nfdf1           4 LVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNS--I   81 (121)
T ss_dssp             EEEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSE--E
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccce--e
Confidence            34556778999999999999998644  35688873  221      11   1          12334444443333  3


Q ss_pred             EEEEcccCCCCCeEEEEEEE
Q psy2775          73 IVTIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        73 ~L~i~~~~~~D~G~Y~C~a~   92 (785)
                      .|+|.+++.+|++.|.|...
T Consensus        82 yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          82 YLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EEEEESCCGGGCEECEEEEE
T ss_pred             eceecccCCCcceEEEEecc
Confidence            49999999999999999754

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0002  Score=55.97  Aligned_cols=90  Identities=12%  Similarity=0.115  Sum_probs=54.1

Q ss_pred             CCee-eecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCC--CCe
Q psy2775          12 PPTF-SKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKR--EEG   85 (785)
Q Consensus        12 ~p~~-~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~--D~G   85 (785)
                      ||.+ ...|........+.++|.|.+.|+ |. ..|+|.+++..+...... .....++.+...+.|+|...+..  ...
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~   84 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDE   84 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCC
Confidence            4444 445555566667889999999987 43 689999998765432110 11123445666778888765543  234


Q ss_pred             EEEEEEEcCCeeEEEE
Q psy2775          86 VYTVVAKNREGEAKMD  101 (785)
Q Consensus        86 ~Y~C~a~~~~~~~~~~  101 (785)
                      .|+|.|.+..+.....
T Consensus        85 ~ytC~V~H~~~~~~~~  100 (105)
T d1dn0b2          85 HVVCKVQHPNGNKEKN  100 (105)
T ss_dssp             EEEEEEECTTCCEEEE
T ss_pred             EEEEEEEECCCCEEeE
Confidence            7999999987655444

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.00024  Score=54.25  Aligned_cols=66  Identities=12%  Similarity=0.177  Sum_probs=39.9

Q ss_pred             CCCeEEEEEEEEecCC--CeeEEEEC--CEEc------c-----------CCCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775          26 ENSEVTLEVRLVAVPE--PDLLWYYN--GEPL------Q-----------ETDEVVFSDQSDMHSYVSIVTIKSIKKREE   84 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p~--~~i~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   84 (785)
                      .|++++|.|+++|...  -.+.|++.  ++.+      .           ...|+.+..+...+  ...|+|.+++.+|+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~--t~~L~~~sL~~eDT   78 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSS--TAYMQLSSLTSEDS   78 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----C--EEEEEECCC---CC
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEecccccc--EEEeeeeecccccc
Confidence            5899999999988643  46889874  2211      1           12345555443332  24599999999999


Q ss_pred             eEEEEEEEc
Q psy2775          85 GVYTVVAKN   93 (785)
Q Consensus        85 G~Y~C~a~~   93 (785)
                      +.|.|....
T Consensus        79 AvYYCAr~~   87 (103)
T d1oari_          79 AVYYCARMW   87 (103)
T ss_dssp             SEEEEEEEE
T ss_pred             EEEEeEEEC
Confidence            999998643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.0001  Score=57.51  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=49.8

Q ss_pred             CCCeEEEEEEEEecCC--CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          26 ENSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        26 ~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      .++.++|.|.+.|.-+  ..|+|+++|..+...... .....++.+...+.|+|......+...|+|.|.+...
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            3568999999988733  689999999876432111 1223445556678899987666667789999998643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.42  E-value=0.00037  Score=55.40  Aligned_cols=76  Identities=11%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             ecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-----------CCCCEEEeecCCccceEEEEE
Q psy2775          17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-----------ETDEVVFSDQSDMHSYVSIVT   75 (785)
Q Consensus        17 ~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~   75 (785)
                      .+.....++.|+++.|.|+++|...  -.+.|++.  ++.      +.           -..|+.+..+...+.  ..|+
T Consensus         4 ~esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t--~~L~   81 (133)
T d1rzfh1           4 VQSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRT--VYLH   81 (133)
T ss_dssp             EECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTE--EEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcce--eEEe
Confidence            3455677899999999999988643  35788873  211      11           124566665544433  4599


Q ss_pred             EcccCCCCCeEEEEEEEcC
Q psy2775          76 IKSIKKREEGVYTVVAKNR   94 (785)
Q Consensus        76 i~~~~~~D~G~Y~C~a~~~   94 (785)
                      |.+++.+|++.|.|.....
T Consensus        82 ~~~L~~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          82 LRGLRSDDTAVYYCASNSI  100 (133)
T ss_dssp             ECSCCGGGCEEEEEEEEEC
T ss_pred             eccCCCCCCEEEEeeeccC
Confidence            9999999999999976543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.41  E-value=5e-05  Score=62.19  Aligned_cols=86  Identities=12%  Similarity=0.126  Sum_probs=59.0

Q ss_pred             CCCeeee-cCCceEecCCCeEEEEEEEEecC--CCeeEEEECCEEccCCCCE----EE---eecCCccceEEEEEEcccC
Q psy2775          11 IPPTFSK-KTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNGEPLQETDEV----VF---SDQSDMHSYVSIVTIKSIK   80 (785)
Q Consensus        11 ~~p~~~~-~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~~~~----~~---~~~~~~~~~~~~L~i~~~~   80 (785)
                      .||.+.. .|....+..+..++|.|.+.|.-  ...|+|+++|+.+......    ..   ...++.+...+.|+|....
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            4677654 55556667788999999998873  3579999999887543111    11   1223445566889988766


Q ss_pred             CCCCe-EEEEEEEcCCe
Q psy2775          81 KREEG-VYTVVAKNREG   96 (785)
Q Consensus        81 ~~D~G-~Y~C~a~~~~~   96 (785)
                      -.+.| .|+|.|.+...
T Consensus        83 W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             HTCTTCEEEEEEEECCB
T ss_pred             hCCCCCEEEEEEEECCC
Confidence            66755 79999998643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.40  E-value=0.00028  Score=56.31  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=50.3

Q ss_pred             cccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--CEEc---------------ccCCCEEEEE-eCcEEEEEEccCCCC
Q psy2775         419 SVPLQDVKVSRDEKASFEIELTKGDALVKWYKD--GKEI---------------AFSENVTLSI-DGKKQKLIIFSAGLE  480 (785)
Q Consensus       419 ~~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--~~~~---------------~~~~~~~~~~-~~~~~~L~i~~~~~~  480 (785)
                      ...|..+.+.+|++++|.|........+.||+.  |+.+               ....+..... ++....|+|.+++.+
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   83 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTN   83 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGG
T ss_pred             EccCCEEEECCCCCEEEEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccC
Confidence            344566778899999999987656667899982  2111               0011222221 233568999999999


Q ss_pred             CcEEEEEEEeec
Q psy2775         481 DAGEYSCRVGDT  492 (785)
Q Consensus       481 d~G~Y~C~a~n~  492 (785)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (113)
T d1j8he1          84 QTSMYLCASSST   95 (113)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CcccEEeeEccC
Confidence            999999988754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.39  E-value=0.00052  Score=53.61  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=49.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeCC--EE------ecCC----------CCeeEEee--CCeEEEEEccCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRNN--KP------LLSS----------PKKREIFD--GENIILELKEADSE  624 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~--~~------i~~~----------~~~~~~~~--~~~~~L~i~~~~~~  624 (785)
                      ...+++|++++|.|.+.|+...  .+.|+|.-  +.      +..+          .|+.+..+  .....|.|.+++. 
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~-   86 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP-   86 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG-
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc-
Confidence            4578999999999999997654  57898832  11      1111          23444433  3456799999999 


Q ss_pred             CCceeEEEEEEcC
Q psy2775         625 TDAGDYKVVATNE  637 (785)
Q Consensus       625 ~d~G~Y~C~a~n~  637 (785)
                      +|++.|.|.+...
T Consensus        87 eDtA~YYCAr~~~   99 (119)
T d1kxvc_          87 DDTAMYYCKPSLR   99 (119)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCcceEeeeeccc
Confidence            9999999976644

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.39  E-value=0.00015  Score=58.43  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             CCCCeeeecCCceE-ecCCCeEEEEEEEEec-C---CCeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCC
Q psy2775          10 GIPPTFSKKTKPVY-AEENSEVTLEVRLVAV-P---EPDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKRE   83 (785)
Q Consensus        10 ~~~p~~~~~~~~~~-v~~G~~v~l~C~~~g~-p---~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (785)
                      ..|..+...|.... ...++.++|.|.+.|. |   ...++|++++..+.... .......++.+...+.|+|..-+-..
T Consensus        14 ~~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~   93 (119)
T d1igtb3          14 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMS   93 (119)
T ss_dssp             CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHT
T ss_pred             cCCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCC
Confidence            34444555666544 4568999999999886 3   35789999998875432 22233455566667788887665556


Q ss_pred             CeEEEEEEEcCCe
Q psy2775          84 EGVYTVVAKNREG   96 (785)
Q Consensus        84 ~G~Y~C~a~~~~~   96 (785)
                      ...|+|.|.+...
T Consensus        94 g~~ytC~V~H~~l  106 (119)
T d1igtb3          94 GKEFKCKVNNKDL  106 (119)
T ss_dssp             TCEEEEEEECTTC
T ss_pred             CCeEEEEEEECCC
Confidence            6789999998653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.38  E-value=0.0002  Score=56.56  Aligned_cols=73  Identities=8%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC---CeeEEEEC--CEE------ccC----------CCCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE---PDLLWYYN--GEP------LQE----------TDEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~---~~i~W~~~--~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +.....++.|++++|.|+++|...   -.+.|++.  |+.      +..          ..|+.+..+...+.  ..|+|
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt--~yL~l   83 (127)
T d3cx5j1           6 ESGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQ--FFLKL   83 (127)
T ss_dssp             EEECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTE--EEEEE
T ss_pred             eECCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccce--eecce
Confidence            344567889999999999998643   35789873  322      111          12333443333332  45999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        84 ~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          84 NSVTTEDTATYYCARS   99 (127)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccccccceEEEeeee
Confidence            9999999999999753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.1e-05  Score=58.30  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             CCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEccc--ceEEEeCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--RQITSEKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                      +.|.+...+. ..+..|++|+|.|... .+...+.++|+|.....  ...........+.|.+++.+|+|.|+|....
T Consensus         3 PkP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            4677766554 4578999999999864 45568899998864321  1111122345799999999999999998753

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.37  E-value=0.00023  Score=56.55  Aligned_cols=73  Identities=12%  Similarity=0.211  Sum_probs=50.4

Q ss_pred             cCCceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------cc-------------CCCCEEEeecCCccceEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQ-------------ETDEVVFSDQSDMHSYVSIV   74 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~-------------~~~~~~~~~~~~~~~~~~~L   74 (785)
                      +.....++.|++++|.|+++|...  -.+.|++.  ++.      |.             -..|+.+..+...+.  ..|
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt--~~L   83 (131)
T d3c2ah1           6 ESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNT--LYL   83 (131)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTE--EEE
T ss_pred             eECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccce--eec
Confidence            344567899999999999988643  36788873  221      11             123455555443333  449


Q ss_pred             EEcccCCCCCeEEEEEEE
Q psy2775          75 TIKSIKKREEGVYTVVAK   92 (785)
Q Consensus        75 ~i~~~~~~D~G~Y~C~a~   92 (785)
                      +|.+++.+|++.|.|...
T Consensus        84 q~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          84 QMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             ceeccccCCceEEEEecc
Confidence            999999999999999865

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.37  E-value=0.00022  Score=54.54  Aligned_cols=74  Identities=12%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             CCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccce----EEEeCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775         113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNK  188 (785)
Q Consensus       113 ~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  188 (785)
                      .|.+...+ ...+..|++|+|.|... .....+.++|+|.......    .........+.|.+++.+|+|.|+|.....
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            35555444 45678899999999975 3456899999875432111    111123467999999999999999987644

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=9.5e-05  Score=57.50  Aligned_cols=82  Identities=16%  Similarity=0.097  Sum_probs=52.1

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      .|...|... -..++.++|.|.+.|. | ...|.|.+++........... ..++.+...+.|+|..-.. +.|.|+|.|
T Consensus         8 V~~l~p~~~-~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~-~~~g~~s~~S~L~v~~~~w-~~~~ytC~V   84 (101)
T d1kcvh2           8 VFPLVPGSA-TAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV-LQSGLYTLSSNTTVASGTW-PSASVTCLV   84 (101)
T ss_dssp             EEEECCCSC-CTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE-EETTEEEEEEEEEEETTTT-TTSCCEEEE
T ss_pred             EEeECCCcc-ccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee-cCCCCEEEEEEEEEchhhc-CCCeEEEEE
Confidence            334444432 2468899999999886 3 368999877754211111111 2345566678899876655 467899999


Q ss_pred             EcCCeeE
Q psy2775          92 KNREGEA   98 (785)
Q Consensus        92 ~~~~~~~   98 (785)
                      .+.....
T Consensus        85 ~H~~~~~   91 (101)
T d1kcvh2          85 AHPKSST   91 (101)
T ss_dssp             EEGGGTE
T ss_pred             EeCCCCe
Confidence            9876544

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.36  E-value=0.00034  Score=55.18  Aligned_cols=70  Identities=21%  Similarity=0.321  Sum_probs=47.3

Q ss_pred             eeeeeecCeEEEEEEEecCCC----CceEEEeC--CEEe------cC----------CCCeeEEee--CCeEEEEEccCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPA----PSIVWFRN--NKPL------LS----------SPKKREIFD--GENIILELKEAD  622 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~--~~~i------~~----------~~~~~~~~~--~~~~~L~i~~~~  622 (785)
                      ...+++|++|+|.|.+.|+..    ..+.|+|.  |+.+      ..          ..|+.+..+  .....|+|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            346788999999999998632    35789983  2110      00          123333332  245789999999


Q ss_pred             CCCCceeEEEEEEcC
Q psy2775         623 SETDAGDYKVVATNE  637 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n~  637 (785)
                      . +|++.|.|.....
T Consensus        89 ~-eDsAvYyCAr~~~  102 (120)
T d2agjh1          89 P-VDTATYYCARTSG  102 (120)
T ss_dssp             G-GGCEEEEEEEECS
T ss_pred             e-ccceEEeeEecCC
Confidence            9 9999999975543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.35  E-value=0.00019  Score=57.25  Aligned_cols=74  Identities=12%  Similarity=0.168  Sum_probs=48.9

Q ss_pred             eeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCE--E---e---------c---CCCCeeEE-eeCCeEEEEEccCCCC
Q psy2775         563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--P---L---------L---SSPKKREI-FDGENIILELKEADSE  624 (785)
Q Consensus       563 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~---i---------~---~~~~~~~~-~~~~~~~L~i~~~~~~  624 (785)
                      ..+....+.+|++++|.|..... ...+.|||...  .   |         .   ...++... ..+....|+|.++.. 
T Consensus         6 Q~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-   83 (113)
T d1nfdb1           6 QSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL-   83 (113)
T ss_dssp             EECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCG-
T ss_pred             EcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCc-
Confidence            33456678999999999986543 34799998321  0   0         0   01122111 223456899999999 


Q ss_pred             CCceeEEEEEEcCC
Q psy2775         625 TDAGDYKVVATNEL  638 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~  638 (785)
                      +|+|.|.|.+....
T Consensus        84 ~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          84 EDSAMYFCASSLRW   97 (113)
T ss_dssp             GGCEEECEEEESSS
T ss_pred             CCceeEEEEeecCC
Confidence            99999999887543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.35  E-value=7.9e-05  Score=58.22  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=42.0

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEE-eeCC----eEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI-FDGE----NIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~-~~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      .++.++|.|.+.|+ |.. .|+|++||.+.......... ..++    .+.|.|..-.- .....|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W-~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNW-VERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHH-HTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHc-CCCCEEEEEEEeCC
Confidence            47789999999995 764 89999999875432111111 1222    23566654322 23456999999865

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.35  E-value=0.00015  Score=57.75  Aligned_cols=73  Identities=12%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             eeeeeeeecCeEEEEEEEecCCCCceEEEeCC--EE---e---c--------CC-CCeeE-EeeCCeEEEEEccCCCCCC
Q psy2775         565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---L---L--------SS-PKKRE-IFDGENIILELKEADSETD  626 (785)
Q Consensus       565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~---i---~--------~~-~~~~~-~~~~~~~~L~i~~~~~~~d  626 (785)
                      +....+.+|++++|.|.... -...+.|||..  ..   |   .        .. .+... ........|.|.++.. +|
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D   82 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP-SH   82 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT-TT
T ss_pred             CCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc-cc
Confidence            34567899999999999753 34579999832  10   0   0        00 01111 0123456799999999 99


Q ss_pred             ceeEEEEEEcCCc
Q psy2775         627 AGDYKVVATNELG  639 (785)
Q Consensus       627 ~G~Y~C~a~n~~g  639 (785)
                      +|.|.|.+....|
T Consensus        83 sa~YyCA~~~~~~   95 (112)
T d2cdeb1          83 TSQYLCASSENIG   95 (112)
T ss_dssp             CSEEEEEEECSSS
T ss_pred             cccEEEEEecCCC
Confidence            9999999876543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.35  E-value=0.00018  Score=55.06  Aligned_cols=64  Identities=14%  Similarity=0.256  Sum_probs=42.8

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEe-eCCe----EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIF-DGEN----IILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~-~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      .++.++|.|.+.|+ |.. .|+|++|+..+.......... .++.    +.|.+.   . +|...|+|.+.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~-~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---D-GEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---G-GGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---C-ccCCEEEEEEEeCCC
Confidence            45689999999996 776 899999998875432221222 2222    245554   3 556689999998653

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.35  E-value=8.6e-05  Score=57.60  Aligned_cols=73  Identities=11%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             cCCceEecCCCeEEEEEEEEec--CCCeeEEEEC--CE------Ecc-CC----------CCEEEeecCCccceEEEEEE
Q psy2775          18 KTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYN--GE------PLQ-ET----------DEVVFSDQSDMHSYVSIVTI   76 (785)
Q Consensus        18 ~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~--~~------~~~-~~----------~~~~~~~~~~~~~~~~~L~i   76 (785)
                      +...-.+++|++++|.|.++|.  ..-.+.|++.  ++      .|. .+          .|+.+..+...+.  ..|+|
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t--~~L~~   83 (117)
T d1b2wh1           6 QSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNT--LYLQM   83 (117)
T ss_dssp             ECCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTE--EEEEE
T ss_pred             eECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccce--EEeee
Confidence            4456678999999999999875  3446788873  21      121 11          3555655444433  45999


Q ss_pred             cccCCCCCeEEEEEEE
Q psy2775          77 KSIKKREEGVYTVVAK   92 (785)
Q Consensus        77 ~~~~~~D~G~Y~C~a~   92 (785)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDTAvYYCAr~   99 (117)
T d1b2wh1          84 NSLRPEDTAVYYCARG   99 (117)
T ss_dssp             CSCCGGGCEEEECCEE
T ss_pred             ccccCCcceEEEEccc
Confidence            9999999999999643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.34  E-value=1.8e-05  Score=62.31  Aligned_cols=84  Identities=13%  Similarity=0.169  Sum_probs=55.3

Q ss_pred             CCeeee-cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          12 PPTFSK-KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        12 ~p~~~~-~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      +|.+.. .|..... .++.++|.|.+.|. |. ..|.|+++|..+...... .....++.+...+.|+|...+..+...|
T Consensus         5 ~P~V~v~~ps~~~~-~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~y   83 (104)
T d1nfde2           5 SPKVTVFPPSPEEL-RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRV   83 (104)
T ss_dssp             CCEEECCCCCHHHH-HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred             CCEEEEECCCHHHH-cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEE
Confidence            454443 3333332 46789999999886 43 589999999988654322 1222344445567788877666677789


Q ss_pred             EEEEEcCCe
Q psy2775          88 TVVAKNREG   96 (785)
Q Consensus        88 ~C~a~~~~~   96 (785)
                      +|.|.+...
T Consensus        84 tC~V~H~~~   92 (104)
T d1nfde2          84 SCQVTHEGE   92 (104)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEECCC
Confidence            999998754

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0001  Score=57.63  Aligned_cols=82  Identities=11%  Similarity=0.109  Sum_probs=57.4

Q ss_pred             eeecCCceEecCCCeEEEEEEEEec-CC---CeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775          15 FSKKTKPVYAEENSEVTLEVRLVAV-PE---PDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGVYTV   89 (785)
Q Consensus        15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~---~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   89 (785)
                      ++.+|....+..++.++|.|.+.|. |.   ..+.|++++........ ......++.....+.|+|..-.......|+|
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC   83 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQC   83 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEE
Confidence            5567777778889999999999986 43   36688888876544322 2233444555566788887665556779999


Q ss_pred             EEEcCCe
Q psy2775          90 VAKNREG   96 (785)
Q Consensus        90 ~a~~~~~   96 (785)
                      +|.+...
T Consensus        84 ~V~H~~l   90 (103)
T d1fp5a1          84 RVTHPHL   90 (103)
T ss_dssp             EEECSSC
T ss_pred             EEEECCC
Confidence            9998653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=8.2e-05  Score=58.00  Aligned_cols=86  Identities=19%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             CCCee-eecCCceEecCCCeEEEEEEEEecC--CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775          11 IPPTF-SKKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY   87 (785)
Q Consensus        11 ~~p~~-~~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   87 (785)
                      .||.+ ...|.... ..++.++|.|.+.|+-  ...|.|..++..... ........++.+...+.|+|..-+. +.+.|
T Consensus         4 s~PsV~~l~p~~~~-~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~-~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~y   80 (102)
T d1mjuh2           4 TAPSVYPLAPVCGD-TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV-HTFPAVLQSDLYTLSSSVTVTSSTW-PSQSI   80 (102)
T ss_dssp             BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE-EECCCEEETTEEEEEEEEEECTTTT-TTSCC
T ss_pred             cCCEEEEECCCccc-cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCe-EecccccCCCCEEEEEEEEEehhHc-CCceE
Confidence            34554 34444333 4578999999999873  368999766643211 1111122355666778899887765 46789


Q ss_pred             EEEEEcCCeeEE
Q psy2775          88 TVVAKNREGEAK   99 (785)
Q Consensus        88 ~C~a~~~~~~~~   99 (785)
                      +|.|.+..+...
T Consensus        81 tC~V~H~~~~~~   92 (102)
T d1mjuh2          81 TCNVAHPASSTK   92 (102)
T ss_dssp             EEEEEEGGGTEE
T ss_pred             EEEEEECCCCEE
Confidence            999998765443

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00048  Score=54.03  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             eeeeeecCeEEEEEEEecC--CCCceEEEeC--CE----EecCC-----------CCeeEEee--CCeEEEEEccCCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKAS--PAPSIVWFRN--NK----PLLSS-----------PKKREIFD--GENIILELKEADSET  625 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~--~~----~i~~~-----------~~~~~~~~--~~~~~L~i~~~~~~~  625 (785)
                      ...+.+|++++|.|...+.  ..-.+.|+|.  ++    .+..+           .++.+..+  ...++|+|.+++. +
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~-e   82 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV-T   82 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG-G
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc-C
Confidence            4578999999999998864  4446889983  22    11111           12333332  4567899999999 9


Q ss_pred             CceeEEEEEEcCC
Q psy2775         626 DAGDYKVVATNEL  638 (785)
Q Consensus       626 d~G~Y~C~a~n~~  638 (785)
                      |+|.|.|.....-
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999986543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.32  E-value=0.00019  Score=53.35  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=41.2

Q ss_pred             CeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         574 GTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       574 ~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      +.++|.|.+.|+ |.. .|.|.++|..+..........++....+.+..+.   ....|+|.+.++.
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~---~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYE---DSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEET---TTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecC---CCCEEEEEEEECC
Confidence            567999999998 554 7999999998765443322223333344444443   3457999999874

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=9.7e-05  Score=57.48  Aligned_cols=66  Identities=12%  Similarity=0.203  Sum_probs=42.6

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEeeCC----eEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFDGE----NIILELKEADSETDAGDYKVVATNEL  638 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~  638 (785)
                      ..+.++|.|.+.|+ |.. .|+|++||.++....... ....++    .+.|.|..-.- .....|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w-~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW-EAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            45689999999996 655 899999999875422111 122232    23566654322 24566999999864

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00036  Score=56.12  Aligned_cols=70  Identities=4%  Similarity=-0.080  Sum_probs=41.8

Q ss_pred             eEecCCCeEEEEEEEEecCC--CeeEEE-ECC-EE---c------------cCCCCEEEeecCCccceEEEEEEcccCCC
Q psy2775          22 VYAEENSEVTLEVRLVAVPE--PDLLWY-YNG-EP---L------------QETDEVVFSDQSDMHSYVSIVTIKSIKKR   82 (785)
Q Consensus        22 ~~v~~G~~v~l~C~~~g~p~--~~i~W~-~~~-~~---~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (785)
                      ..+.+|++|+|.|..++...  ....|+ +.. ..   +            ....+..+..+....  ..+|+|.+++.+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~l~~~   87 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNE--SVTFYLQNLYVN   87 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSS--EEEEEEESCCGG
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCC--eEEEEECCCCcc
Confidence            45778999999999865432  223454 421 10   1            011222333222211  246999999999


Q ss_pred             CCeEEEEEEEc
Q psy2775          83 EEGVYTVVAKN   93 (785)
Q Consensus        83 D~G~Y~C~a~~   93 (785)
                      |+|.|.|.+..
T Consensus        88 DsavYyCa~~~   98 (118)
T d1yjdc1          88 QTDIYFCKIEV   98 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCeEEEEEEec
Confidence            99999998753

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.31  E-value=0.00099  Score=51.67  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecC----------CCCeeEEee--CCeEEEEEccCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS----------SPKKREIFD--GENIILELKEADSE  624 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~----------~~~~~~~~~--~~~~~L~i~~~~~~  624 (785)
                      ...+++|++++|.|.+.|+.-.  -+.|+|.  |+-      +..          ..|+.+..+  .....|+|++++. 
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~-   87 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA-   87 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc-
Confidence            4468889999999999997555  5789872  211      111          123344433  3457899999999 


Q ss_pred             CCceeEEEEEEcCC
Q psy2775         625 TDAGDYKVVATNEL  638 (785)
Q Consensus       625 ~d~G~Y~C~a~n~~  638 (785)
                      +|++.|.|......
T Consensus        88 eDtAvYyCAr~~~~  101 (116)
T d7fabh1          88 ADTAVYYCARNLIA  101 (116)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccceEEEeeeecCC
Confidence            99999999875443

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.31  E-value=0.00028  Score=56.17  Aligned_cols=72  Identities=13%  Similarity=0.219  Sum_probs=48.7

Q ss_pred             ccCCCeEEecCCcEEEEEEEeCCCceEEEEEC--CEEc------cc---------CCCEEEE-EeCcEEEEEEccCCCCC
Q psy2775         420 VPLQDVKVSRDEKASFEIELTKGDALVKWYKD--GKEI------AF---------SENVTLS-IDGKKQKLIIFSAGLED  481 (785)
Q Consensus       420 ~~~~~~~v~~g~~~~l~C~~~~~~~~i~W~~~--~~~~------~~---------~~~~~~~-~~~~~~~L~i~~~~~~d  481 (785)
                      ..|....+.+|++++|.|........+.||+.  |+.+      ..         ..+.... .......|+|.++..+|
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             ECCCeEEECCCCCEEEEEEEECCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            34556678899999999998766677999982  2111      00         0111111 12224579999999999


Q ss_pred             cEEEEEEEee
Q psy2775         482 AGEYSCRVGD  491 (785)
Q Consensus       482 ~G~Y~C~a~n  491 (785)
                      +|.|.|.+..
T Consensus        84 savYyCA~~~   93 (112)
T d2bnub1          84 TSVYFCASSY   93 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeecC
Confidence            9999997764

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.31  E-value=2e-05  Score=62.05  Aligned_cols=70  Identities=17%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcceE
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFDGEN----IILELKEADSETDAGDYKVVATNELGSAT  642 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~  642 (785)
                      .++.++|.|.+.|+ |.. .|.|++||+++....... ....++.    +.|.|..-.- .+...|+|.|.+......
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w-~~~~~ytC~V~H~~~~~~   95 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQW-KSHNRVSCQVTHEGETVE   95 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHH-HTCSCEEEEEECTTTTCC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHc-CCCCEEEEEEEECCCcEE
Confidence            46789999999995 654 899999999987543211 1222333    2344443222 345679999999865443

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00049  Score=48.09  Aligned_cols=58  Identities=16%  Similarity=0.331  Sum_probs=43.3

Q ss_pred             ccCCcEEEEEEEeccCCC--eEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775         126 TEGESAVLSVQVGGEPSP--KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN  187 (785)
Q Consensus       126 ~~G~~v~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  187 (785)
                      ..|..+.|.|.....+..  --.|.|+|+.|.+...  .+....+.|..  .+++|.|.|....
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~--~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL--PGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC--CCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC--CCCceEEEEec--CCCCceEEEEEcC
Confidence            458889999999765432  5789999999987532  23445677765  8899999999653

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.29  E-value=0.00065  Score=51.74  Aligned_cols=67  Identities=9%  Similarity=0.173  Sum_probs=42.4

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe--eEEee-CCeE-EEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIFD-GENI-ILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~--~~~~~-~~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      .+..++|.|.+.|+ |.. .|+|++||..+..+...  ....+ ++.+ ....-.+.. ++...|+|.+.....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~-~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ-GEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET-TCGGGEEEEEEETTE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEECCC
Confidence            35678999999997 665 89999999988754332  11122 2222 112222334 555679999998644

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.29  E-value=0.00091  Score=53.55  Aligned_cols=73  Identities=22%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             cccCCCeEEecCCcEEEEEEEeCC---CceEEEEEC--CE---Ec-------------ccCCCEEEEEe--CcEEEEEEc
Q psy2775         419 SVPLQDVKVSRDEKASFEIELTKG---DALVKWYKD--GK---EI-------------AFSENVTLSID--GKKQKLIIF  475 (785)
Q Consensus       419 ~~~~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~--~~---~~-------------~~~~~~~~~~~--~~~~~L~i~  475 (785)
                      ..++..+...+|++++|.|.+.+.   ...+.|++.  |+   .+             ....+..++.+  .....|+|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            344556677789999999998763   345899982  21   11             01124445543  346789999


Q ss_pred             cCCCCCcEEEEEEEee
Q psy2775         476 SAGLEDAGEYSCRVGD  491 (785)
Q Consensus       476 ~~~~~d~G~Y~C~a~n  491 (785)
                      +++.+|+|.|.|.+..
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999997764

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.28  E-value=0.00031  Score=53.73  Aligned_cols=67  Identities=10%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             CCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775          26 ENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE   95 (785)
Q Consensus        26 ~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~   95 (785)
                      .++.++|.|.+.|+ |. ..|+|++++..+...... .....++.+...+.|+|..   +|...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            56789999999887 44 489999999876543211 2334455555667788865   34567999999865

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.00011  Score=57.35  Aligned_cols=82  Identities=9%  Similarity=0.058  Sum_probs=54.2

Q ss_pred             eeecCCceE-ecCCCeEEEEEEEEec-CC---CeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775          15 FSKKTKPVY-AEENSEVTLEVRLVAV-PE---PDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYT   88 (785)
Q Consensus        15 ~~~~~~~~~-v~~G~~v~l~C~~~g~-p~---~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   88 (785)
                      ++.+|.... ...+.+++|.|.+.|. |.   ..++|+++|..+.... .......++.+...+.|+|..-+-...-.|+
T Consensus         3 ~l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~t   82 (103)
T d1i1ca1           3 FIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFK   82 (103)
T ss_dssp             EEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred             EEECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEE
Confidence            344555544 3467789999999875 33   5789999998765432 1122344555566678887765544556799


Q ss_pred             EEEEcCCe
Q psy2775          89 VVAKNREG   96 (785)
Q Consensus        89 C~a~~~~~   96 (785)
                      |.|.+...
T Consensus        83 C~V~H~~l   90 (103)
T d1i1ca1          83 CKVNSGAF   90 (103)
T ss_dssp             EEEECSSS
T ss_pred             EEEEeCCC
Confidence            99998653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.00012  Score=57.11  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEE-eeCCe----EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI-FDGEN----IILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~-~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ..+.++|.|.+.|+ |.. .|+|++||.++......... ..++.    +.|.|..-.- .....|+|.+.....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w-~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETW-QQGNTFTCSVLHEGL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTTS
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHh-CCCCEEEEEEEeCCC
Confidence            35789999999997 553 89999999986432211111 12222    3466665433 345569999998643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.26  E-value=0.0009  Score=51.09  Aligned_cols=69  Identities=19%  Similarity=0.301  Sum_probs=48.9

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecC-------------CCCeeEEee--CCeEEEEEccC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-------------SPKKREIFD--GENIILELKEA  621 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~-------------~~~~~~~~~--~~~~~L~i~~~  621 (785)
                      ...+++|++++|+|.+.|+.-.  -+.|+|.  |+.      |..             ..++.+..+  .....|.|.++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            4578999999999999997554  5888872  211      111             114444444  34567999999


Q ss_pred             CCCCCceeEEEEEEc
Q psy2775         622 DSETDAGDYKVVATN  636 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n  636 (785)
                      +. +|++.|.|...+
T Consensus        89 ~~-eDTAvYYCAr~~  102 (109)
T d2ck0h1          89 KT-EDTGIYYCVRGR  102 (109)
T ss_dssp             CG-GGCEEEEEEEEC
T ss_pred             CH-hHCEEEEEEEcC
Confidence            99 999999998644

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00024  Score=55.95  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=44.4

Q ss_pred             ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEE-e--eCCe----EEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI-F--DGEN----IILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~-~--~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      .++.++|.|.+.|+ |.. .|+|++||..+......... .  .++.    +.|.|..-.- +....|+|.+.+.....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W-~~~~~ytC~V~H~~~~~   96 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQGLSS   96 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHh-CCCCEEEEEEEECCCCC
Confidence            46789999999996 665 89999999987543221111 1  1222    3566655332 33446999999976543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00015  Score=57.07  Aligned_cols=85  Identities=18%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             CCeeeecCCc-eEecCCCeEEEEEEEEec-CC---CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCe
Q psy2775          12 PPTFSKKTKP-VYAEENSEVTLEVRLVAV-PE---PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEG   85 (785)
Q Consensus        12 ~p~~~~~~~~-~~v~~G~~v~l~C~~~g~-p~---~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G   85 (785)
                      |-.+...|.. ..+..++.++|.|.+.|. |.   ..+.|.+++..+...... .....++.+...+.|+|..-.-...-
T Consensus         2 PsV~l~~Ps~~e~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~   81 (105)
T d1l6xa1           2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (105)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CEEEEECCCHHHhhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCC
Confidence            3444555544 346678999999999886 33   567899999877543211 22234455566778888776555566


Q ss_pred             EEEEEEEcCCe
Q psy2775          86 VYTVVAKNREG   96 (785)
Q Consensus        86 ~Y~C~a~~~~~   96 (785)
                      .|+|.|.+...
T Consensus        82 ~ytC~V~H~~l   92 (105)
T d1l6xa1          82 EYKCKVSNKAL   92 (105)
T ss_dssp             CEEEEEECTTS
T ss_pred             EEEEEEEeCCC
Confidence            89999998764

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00042  Score=54.42  Aligned_cols=64  Identities=22%  Similarity=0.335  Sum_probs=44.0

Q ss_pred             cCCcEEEEEEEecc-CC-CeEEEeECCEEcccceEEE------eCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775         127 EGESAVLSVQVGGE-PS-PKVEWYKDGKLIKDRQITS------EKN----THTLTLIQCSTKDKGRYSVKVTNKEG  190 (785)
Q Consensus       127 ~G~~v~l~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~------~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g  190 (785)
                      .+..++|.|.+.|+ |. ..|+|++||..+.......      .++    .+.|.|..-.......|+|.+.+...
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            46679999999885 43 4899999999876542211      112    23566665555557789999998653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00029  Score=54.82  Aligned_cols=72  Identities=8%  Similarity=0.111  Sum_probs=50.3

Q ss_pred             cCCCeEEEEEEEEec-CC--CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775          25 EENSEVTLEVRLVAV-PE--PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG   96 (785)
Q Consensus        25 ~~G~~v~l~C~~~g~-p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~   96 (785)
                      ..++.++|.|.+.|+ |.  ..+.|.+++..+...........++.+...+.|+|...+......|+|.|.+...
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            457889999999996 44  3567877775543222122334555667778899998877777789999998654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.21  E-value=0.00074  Score=52.40  Aligned_cols=70  Identities=17%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecC-----------CCCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-----------SPKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~-----------~~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|+|.+.|+.-.  .+.|+|.  |+.      |..           ..|+.+..+  .....|.|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            4567889999999999997544  5789882  211      111           123344433  3456799999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|++.|.|.....
T Consensus        89 -eDtAvYYCA~~~~  101 (117)
T d1iqdb1          89 -DDTAVYYCAVPDP  101 (117)
T ss_dssp             -GGCEEEEEEECSS
T ss_pred             -CcceEEEEeEcCC
Confidence             9999999987654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.0009  Score=51.92  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=46.8

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...++.|++++|.|.+.|+.--  .+.|+|.  |+.      |. .+          .|+.+..+  .....|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            4568899999999999998655  5788872  221      11 11          23333333  3456799999999


Q ss_pred             CCCceeEEEEE
Q psy2775         624 ETDAGDYKVVA  634 (785)
Q Consensus       624 ~~d~G~Y~C~a  634 (785)
                       +|++.|.|..
T Consensus        89 -eDTAvYYCAr   98 (118)
T d2jelh1          89 -EDSAIYYCAR   98 (118)
T ss_dssp             -GGCEEEEEEE
T ss_pred             -CcceeeeEEE
Confidence             9999999954

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.20  E-value=0.00068  Score=53.00  Aligned_cols=70  Identities=11%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             eeeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecC-----------CCCeeEEee--CCeEEEEEccCC
Q psy2775         566 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-----------SPKKREIFD--GENIILELKEAD  622 (785)
Q Consensus       566 ~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~-----------~~~~~~~~~--~~~~~L~i~~~~  622 (785)
                      ....+++|++++|.|.+.|+.--  -+.|+|.  |+.      |..           ..|+.+..+  .....|.|.+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            35578999999999999998654  4788882  211      111           123344443  345679999999


Q ss_pred             CCCCceeEEEEEEc
Q psy2775         623 SETDAGDYKVVATN  636 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n  636 (785)
                      . +|++.|.|....
T Consensus        89 ~-eDtA~YYCAr~~  101 (122)
T d1vgeh1          89 P-EDTAVYYCARDP  101 (122)
T ss_dssp             G-GGCEEEEEEEET
T ss_pred             C-CcceEEEEeecC
Confidence            9 999999998753

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00032  Score=54.60  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=43.4

Q ss_pred             cCCcEEEEEEEecc-CC-CeEEEeECCEEcccce----EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775         127 EGESAVLSVQVGGE-PS-PKVEWYKDGKLIKDRQ----ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKE  189 (785)
Q Consensus       127 ~G~~v~l~C~~~g~-p~-~~v~W~~~g~~~~~~~----~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~  189 (785)
                      .++.++|.|.+.|+ |. ..|+|++||.......    ....++    .+.|.|..-..+..-.|+|++.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999985 43 4899999998865431    112222    3456666555555668999999864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.0011  Score=51.20  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=48.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecCC----------CCeeEEee--CCeEEEEEccCCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLSS----------PKKREIFD--GENIILELKEADSE  624 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~~----------~~~~~~~~--~~~~~L~i~~~~~~  624 (785)
                      ...+++|++++|.|.+.|+.-.  -+.|+|.  |+.      |..+          .|+.+..+  .....|+|.++.. 
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~-   87 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT-   87 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG-
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc-
Confidence            4468899999999999998654  5889882  221      1111          23444443  3456899999999 


Q ss_pred             CCceeEEEEEE
Q psy2775         625 TDAGDYKVVAT  635 (785)
Q Consensus       625 ~d~G~Y~C~a~  635 (785)
                      +|++.|.|...
T Consensus        88 eDtAvYYCAr~   98 (117)
T d1c5db1          88 EDTAIYFCTRE   98 (117)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEecc
Confidence            99999999654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.17  E-value=0.0013  Score=50.94  Aligned_cols=69  Identities=14%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-C----------CCCeeEEeeC--CeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-S----------SPKKREIFDG--ENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~----------~~~~~~~~~~--~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|.  |+.      |. .          ..|+.+..+.  ....|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            4467889999999999997555  5789872  111      11 1          1244444443  446799999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|++.|.|....
T Consensus        89 -eDTAvYYCAr~~  100 (117)
T d1jnhb1          89 -EDSAVYSCSRGR  100 (117)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -CcceEEEEeecC
Confidence             999999997643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.17  E-value=0.0013  Score=51.19  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...++.|++++|.|.+.|+.-.  .+.|+|.  |+.      |. .+          .|+.+..+  .....|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            4467899999999999997654  5889873  111      11 11          23444443  3456799999999


Q ss_pred             CCCceeEEEEEE
Q psy2775         624 ETDAGDYKVVAT  635 (785)
Q Consensus       624 ~~d~G~Y~C~a~  635 (785)
                       +|++.|.|...
T Consensus        89 -eDTAvYYCAr~   99 (119)
T d1rz7h1          89 -EDTAVYYCAAD   99 (119)
T ss_dssp             -GGCEEEEEEEC
T ss_pred             -ccceEEEEeec
Confidence             99999999764

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.17  E-value=0.0013  Score=50.76  Aligned_cols=70  Identities=16%  Similarity=0.233  Sum_probs=48.6

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CE------Eec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NK------PLL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~------~i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|.  |+      .|. .+          .|+.+..+  .....|.+.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            4578899999999999997644  5788873  21      111 11          23334333  3456799999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|++.|.|.....
T Consensus        89 -eDTAvYYCAr~~~  101 (117)
T d1jpth1          89 -EDTAVYYCARDTA  101 (117)
T ss_dssp             -GGCEEEEEEEECS
T ss_pred             -CCceEEEEeecCC
Confidence             9999999976543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.16  E-value=0.0011  Score=51.51  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=46.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+--.  .+.|+|.  |+.      |. .+          .|+.+..+  .....|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            3468889999999999987433  5889882  211      11 11          13333332  3346799999999


Q ss_pred             CCCceeEEEEE
Q psy2775         624 ETDAGDYKVVA  634 (785)
Q Consensus       624 ~~d~G~Y~C~a  634 (785)
                       +|++.|.|..
T Consensus        89 -eDtAvYYCAr   98 (115)
T d1f3dh1          89 -EDSAVYYCAN   98 (115)
T ss_dssp             -GGCEEEEEEE
T ss_pred             -CCcEEEEEec
Confidence             9999999954

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=9.4e-05  Score=57.64  Aligned_cols=72  Identities=11%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             CceEecCCCeEEEEEEEEecCC--CeeEEEEC--CEE------ccCC----------CCEEEeecCCccceEEEEEEccc
Q psy2775          20 KPVYAEENSEVTLEVRLVAVPE--PDLLWYYN--GEP------LQET----------DEVVFSDQSDMHSYVSIVTIKSI   79 (785)
Q Consensus        20 ~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~--~~~------~~~~----------~~~~~~~~~~~~~~~~~L~i~~~   79 (785)
                      ....++.|++++|+|+++|...  -.+.|++.  ++.      +...          .|+.+..+...+  ...|+|.++
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~--tv~L~~~~L   85 (116)
T d1fn4b1           8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKN--QVFLKMNSL   85 (116)
T ss_dssp             CCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGT--EEECCEESC
T ss_pred             CCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccc--hhhcceecc
Confidence            3456789999999999988643  46789873  221      1111          233333333222  245999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy2775          80 KKREEGVYTVVAKN   93 (785)
Q Consensus        80 ~~~D~G~Y~C~a~~   93 (785)
                      +.+|++.|.|....
T Consensus        86 ~~eDTAvYyCAr~~   99 (116)
T d1fn4b1          86 QTDDTGTYYCTRDL   99 (116)
T ss_dssp             CCCCCEEEEEEEEC
T ss_pred             CCCCCEEEEEEeec
Confidence            99999999997543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.16  E-value=0.0013  Score=51.11  Aligned_cols=67  Identities=13%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEEe------cC-----------CCCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------LS-----------SPKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~i------~~-----------~~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+---  -+.|+|.  |+-+      ..           ..+..+..+  .....|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            5577899999999999997543  4778872  2211      11           113334333  3456799999999


Q ss_pred             CCCceeEEEEE
Q psy2775         624 ETDAGDYKVVA  634 (785)
Q Consensus       624 ~~d~G~Y~C~a  634 (785)
                       +|++.|.|..
T Consensus        89 -eDtAvYYCAr   98 (117)
T d1mfah1          89 -EDSAVYYCTR   98 (117)
T ss_dssp             -GGCEEEEEEE
T ss_pred             -CcceEEEEec
Confidence             9999999964

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00087  Score=53.79  Aligned_cols=69  Identities=10%  Similarity=-0.032  Sum_probs=43.5

Q ss_pred             eeeeecCeEEEEEEEecCCCC--c-eEEEeCC-E--E-e------------cCCCCeeEE--eeCCeEEEEEccCCCCCC
Q psy2775         568 KTVKEKGTIRLMAKVKASPAP--S-IVWFRNN-K--P-L------------LSSPKKREI--FDGENIILELKEADSETD  626 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~p--~-v~W~~~~-~--~-i------------~~~~~~~~~--~~~~~~~L~i~~~~~~~d  626 (785)
                      ..+.+|++++|.|...+.-..  - +.|++.. .  + +            ....+.+..  ..+...+|+|.+++. +|
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~D   88 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYV-NQ   88 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCG-GG
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCc-cc
Confidence            356789999999998765333  2 3455521 1  1 1            011122222  234567899999999 99


Q ss_pred             ceeEEEEEEcC
Q psy2775         627 AGDYKVVATNE  637 (785)
Q Consensus       627 ~G~Y~C~a~n~  637 (785)
                      +|.|.|.+...
T Consensus        89 savYyCa~~~~   99 (118)
T d1yjdc1          89 TDIYFCKIEVM   99 (118)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEEEecc
Confidence            99999987643

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.14  E-value=0.0015  Score=51.32  Aligned_cols=70  Identities=24%  Similarity=0.372  Sum_probs=49.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CE------EecC-C----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NK------PLLS-S----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~------~i~~-~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|.  |+      .|.. +          .|+.+..+  .....|.|++++.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            4478899999999999997554  5889883  11      1211 1          23344443  3456799999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|++.|.|.....
T Consensus        88 -eDtAvYYCAr~~~  100 (124)
T d1zvya1          88 -EDTAIYTCGATRK  100 (124)
T ss_dssp             -GGCEEEEEEECSS
T ss_pred             -CcceEEEEeeccc
Confidence             9999999987643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.0011  Score=51.10  Aligned_cols=68  Identities=19%  Similarity=0.291  Sum_probs=48.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|+|.+.|+.-.  -+.|+|.  |+.      |. .+          .|+.+..+  .....|.+.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~   88 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence            5678999999999999997655  5788872  211      11 11          13444433  3456799999999


Q ss_pred             CCCceeEEEEEE
Q psy2775         624 ETDAGDYKVVAT  635 (785)
Q Consensus       624 ~~d~G~Y~C~a~  635 (785)
                       +|++.|.|...
T Consensus        89 -eDtAvYYCAr~   99 (116)
T d1mjuh1          89 -DDSAVYYCANK   99 (116)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -CCceEEEEccc
Confidence             99999999753

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00014  Score=56.80  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=51.7

Q ss_pred             eeeecCCceEecCCCeEEEEEEEEecCC--CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775          14 TFSKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA   91 (785)
Q Consensus        14 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   91 (785)
                      .|...|..... .+..++|.|.+.|+-+  ..|+|.+++........-.....++.+...+.|+|..-.. ....|+|.+
T Consensus         8 V~~l~ps~~~~-~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V   85 (103)
T d1c5ch2           8 VFPLAPSSKST-SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNV   85 (103)
T ss_dssp             EEEECCCGGGE-ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEE
T ss_pred             EEEECCCchhc-CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEE
Confidence            33444443332 4778999999988733  5899977664321111111233455566678899876654 346799999


Q ss_pred             EcCCeeEE
Q psy2775          92 KNREGEAK   99 (785)
Q Consensus        92 ~~~~~~~~   99 (785)
                      .+......
T Consensus        86 ~H~~~~~~   93 (103)
T d1c5ch2          86 NHKPSNTK   93 (103)
T ss_dssp             EEGGGTEE
T ss_pred             EeCCCCEE
Confidence            98765443

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.12  E-value=0.00085  Score=51.99  Aligned_cols=67  Identities=13%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CE------Eec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NK------PLL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~------~i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...++.|++++|.|.+.|+.-.  .+.|+|.  |+      .|. .+          .|+.+..+  .....|+|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            3568899999999999997544  5889882  21      111 11          23344433  2456799999999


Q ss_pred             CCCceeEEEEE
Q psy2775         624 ETDAGDYKVVA  634 (785)
Q Consensus       624 ~~d~G~Y~C~a  634 (785)
                       +|++.|.|..
T Consensus        89 -eDtAvYYCAr   98 (118)
T d1nlbh1          89 -EDTATYFCAR   98 (118)
T ss_dssp             -GGCEEEEEEE
T ss_pred             -CcceEEEEee
Confidence             9999999953

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.12  E-value=0.00067  Score=53.93  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=48.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeCC--EE---e---c-----CC-----------CCeeEEee--CCeEEEEE
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRNN--KP---L---L-----SS-----------PKKREIFD--GENIILEL  618 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~--~~---i---~-----~~-----------~~~~~~~~--~~~~~L~i  618 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|..  +.   +   .     ..           .|+.+..+  .....|+|
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            4467889999999999997544  57898731  10   1   0     00           13334332  34578999


Q ss_pred             ccCCCCCCceeEEEEEEc
Q psy2775         619 KEADSETDAGDYKVVATN  636 (785)
Q Consensus       619 ~~~~~~~d~G~Y~C~a~n  636 (785)
                      .+++. +|++.|.|.+..
T Consensus        89 ~~l~~-eDtAvYYCAr~~  105 (127)
T d1i3ua_          89 NSLKP-EDTAVYYCAAKT  105 (127)
T ss_dssp             CSCCG-GGCEEEEEEEES
T ss_pred             ecccc-cceeEEEEEEEe
Confidence            99999 999999999764

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.11  E-value=0.0013  Score=51.66  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=46.5

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecC-----------CCCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-----------SPKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~-----------~~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|.  |+.      +..           ..|+.+..+  .....|+|.+++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            3467889999999999987433  5889882  221      111           123344333  3456799999999


Q ss_pred             CCCceeEEEEEE
Q psy2775         624 ETDAGDYKVVAT  635 (785)
Q Consensus       624 ~~d~G~Y~C~a~  635 (785)
                       +|++.|.|...
T Consensus        89 -eDsAvYYCA~~   99 (119)
T d1qnzh_          89 -DDSAVYYCAIH   99 (119)
T ss_dssp             -GGCEEEEEEEC
T ss_pred             -cceeEEEEEEe
Confidence             99999999653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.10  E-value=0.00043  Score=54.33  Aligned_cols=71  Identities=8%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             eeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeE-EeeCCe----EEEEEccCCCCCC-ceeEEEEEEcCC
Q psy2775         567 EKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE-IFDGEN----IILELKEADSETD-AGDYKVVATNEL  638 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~-~~~~~~----~~L~i~~~~~~~d-~G~Y~C~a~n~~  638 (785)
                      ...+..+..++|.|.+.|+ |.. .|+|++||..+..+..... ...++.    +.|+|.   . ++ ...|+|.+.+..
T Consensus        18 ~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~-~~w~~~ytC~V~H~s   93 (107)
T d1hxmb2          18 IAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---E-KSLDKEHRCIVRHEN   93 (107)
T ss_dssp             GGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---T-GGGGSCEEEEEEETT
T ss_pred             HHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---c-ccCCCeEEEEEEECC
Confidence            3446667899999999996 665 8999999987764332111 112222    245553   3 33 346999999876


Q ss_pred             cce
Q psy2775         639 GSA  641 (785)
Q Consensus       639 g~~  641 (785)
                      +..
T Consensus        94 ~~~   96 (107)
T d1hxmb2          94 NKN   96 (107)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            544

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.0027  Score=49.21  Aligned_cols=67  Identities=22%  Similarity=0.318  Sum_probs=46.4

Q ss_pred             CcceeCCCCeEEEEEEEccCCCC--eEEEEE--CCEEcc--------------------cceEEE--eCCEEEEEEccCC
Q psy2775         243 HDVSITEGESAVLSVQVGGEPSP--KVEWYK--DGKLIK--------------------DRQITS--EKNTHTLTLIQCS  296 (785)
Q Consensus       243 ~~~~~~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~l~--------------------~~~~~~--~~~~~~l~i~~~~  296 (785)
                      ....+++|++++|.|.+.|....  .+.|+|  .|+.+.                    ...+..  ..+...|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            35678899999999999886543  678988  232221                    111222  2345579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy2775         297 TKDKGRYSVKVTN  309 (785)
Q Consensus       297 ~~d~G~Y~C~~~n  309 (785)
                      .+|++.|.|....
T Consensus        87 ~eDtAvYYCAr~~   99 (117)
T d1um5h1          87 SEDSAVYYCARSS   99 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEEeecc
Confidence            9999999996443

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.10  E-value=4.9e-05  Score=62.24  Aligned_cols=80  Identities=13%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             cCCCcCCCCCCcEEeecCCeEEEEEEEec-CCCC-ceEEeECCEEeeecccccc------------chhhhcccccceee
Q psy2775         692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPP-KAEWTVNGTVIVPSKRVKG------------KAEFIKKLDDLEVK  757 (785)
Q Consensus       692 ~~P~i~~~~~~~~~~~~g~~~~l~C~~~g-~P~p-~i~W~~~~~~~~~~~~~~~------------~~~~~~~l~~~~v~  757 (785)
                      .||.+....+.......++.++|.|.+.| +|.. .|+|++||+.+..+.....            .+...+.|++..-.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            45666543343334556788999999999 4544 7899999999876432211            01112334433222


Q ss_pred             eee-ceEEEEEEecc
Q psy2775         758 ERE-NAVLEVEVTSD  771 (785)
Q Consensus       758 ~~~-~~~~~c~~~~~  771 (785)
                      ..+ ...|+|+|.+.
T Consensus        83 W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          83 WQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HTCTTCEEEEEEEEC
T ss_pred             hCCCCCEEEEEEEEC
Confidence            234 35899999873

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.07  E-value=0.0018  Score=51.00  Aligned_cols=70  Identities=19%  Similarity=0.301  Sum_probs=49.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-C----------CCCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-S----------SPKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~----------~~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|+|.+.|+.--  .+.|+|.  |+.      |. .          ..|+.+..+  .....|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            4468899999999999997655  4678762  111      11 1          124444444  3456799999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|++.|.|.....
T Consensus        89 -eDTA~YYCAr~~~  101 (128)
T d2nxyd1          89 -DDTAVYFCAGVYE  101 (128)
T ss_dssp             -GGCEEEEEEEEEC
T ss_pred             -cCceEEEEeEEec
Confidence             9999999997653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.03  E-value=0.0029  Score=49.18  Aligned_cols=69  Identities=17%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEEe------cC--C-----------CCeeEEee--CCeEEEEEccC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------LS--S-----------PKKREIFD--GENIILELKEA  621 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~i------~~--~-----------~~~~~~~~--~~~~~L~i~~~  621 (785)
                      ...+++|++++|.|.+.|+.--  .+.|+|.  |+.+      ..  +           .|+.+..+  .....|+|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L   88 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL   88 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence            3467889999999999997544  5789882  2211      10  0           13344443  34568999999


Q ss_pred             CCCCCceeEEEEEEc
Q psy2775         622 DSETDAGDYKVVATN  636 (785)
Q Consensus       622 ~~~~d~G~Y~C~a~n  636 (785)
                      +. +|++.|.|....
T Consensus        89 ~~-eDtAvYYCA~~~  102 (120)
T d1dlfh_          89 RA-EDTGIYYCTGIY  102 (120)
T ss_dssp             CG-GGCEEEEEEEEB
T ss_pred             cC-CCceEEEeeEec
Confidence            99 999999997654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.01  E-value=0.0022  Score=49.72  Aligned_cols=72  Identities=19%  Similarity=0.253  Sum_probs=49.8

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|.  |+.      |. .+          .|+.+..+  .....|.|++++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            4578899999999999998554  5788872  211      11 11          13334333  3446799999999


Q ss_pred             CCCceeEEEEEEcCCc
Q psy2775         624 ETDAGDYKVVATNELG  639 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~~g  639 (785)
                       +|++.|.|......+
T Consensus        89 -eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          89 -EDTALYYCARLHYYG  103 (118)
T ss_dssp             -GGCEEEEEEEEETTT
T ss_pred             -CcceEEEeeEecCCC
Confidence             999999998766544

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.01  E-value=0.0013  Score=51.89  Aligned_cols=69  Identities=17%  Similarity=0.337  Sum_probs=46.9

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|+|.+.|+.-.  .+.|+|.  |+.      |. .+          .++.+..+  .....|+|++++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            4568899999999999997544  5789882  211      11 11          23444443  3345699999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|++.|.|....
T Consensus        88 -eDTAvYYCAr~~   99 (126)
T d1rjca1          88 -EDTAMYYCAADT   99 (126)
T ss_dssp             -GGCEEEEEEECC
T ss_pred             -ccCceeEEEeec
Confidence             999999998654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.00  E-value=0.0017  Score=50.00  Aligned_cols=67  Identities=24%  Similarity=0.355  Sum_probs=47.0

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CE------EecC-C----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NK------PLLS-S----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~------~i~~-~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.-.  .+.|+|.  |+      .|.. +          .|+.+..+  .....|+|++++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            4478899999999999997554  5789883  21      1211 1          23334433  3456799999999


Q ss_pred             CCCceeEEEEE
Q psy2775         624 ETDAGDYKVVA  634 (785)
Q Consensus       624 ~~d~G~Y~C~a  634 (785)
                       +|++.|.|..
T Consensus        89 -eDtAvYYCA~   98 (114)
T d1indh1          89 -EDTALYFCAS   98 (114)
T ss_dssp             -GGCEEEEEEC
T ss_pred             -CcccEEEECC
Confidence             9999999964

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00038  Score=54.29  Aligned_cols=78  Identities=13%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             EeeeeeeeeeeecCeEEEEEEEecC-CCC---ceEEEeCCEEecCCCCeeEEee-CC----eEEEEEccCCCCCCceeEE
Q psy2775         561 FIERFEEKTVKEKGTIRLMAKVKAS-PAP---SIVWFRNNKPLLSSPKKREIFD-GE----NIILELKEADSETDAGDYK  631 (785)
Q Consensus       561 ~~~~~~~~~v~~g~~v~l~C~~~g~-P~p---~v~W~~~~~~i~~~~~~~~~~~-~~----~~~L~i~~~~~~~d~G~Y~  631 (785)
                      ++.++....+..+.+++|.|.+.|+ |..   ++.|++++.............. ++    .+.|.|..-.- .....|+
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w-~~g~~~t   82 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDW-IEGETYQ   82 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHH-HTTCCEE
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHh-CCCCeEE
Confidence            3444444556678899999999996 652   6788888877654432222222 22    23455543222 2356799


Q ss_pred             EEEEcCCc
Q psy2775         632 VVATNELG  639 (785)
Q Consensus       632 C~a~n~~g  639 (785)
                      |.+.+...
T Consensus        83 C~V~H~~l   90 (103)
T d1fp5a1          83 CRVTHPHL   90 (103)
T ss_dssp             EEEECSSC
T ss_pred             EEEEECCC
Confidence            99998754

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.00  E-value=0.0017  Score=50.98  Aligned_cols=67  Identities=15%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...++.|++++|.|.+.|+.--  -+.|+|.  |+.      |. .+          .++.+..+  .....|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            5578999999999999997554  5789872  211      11 11          23344443  3456799999999


Q ss_pred             CCCceeEEEEE
Q psy2775         624 ETDAGDYKVVA  634 (785)
Q Consensus       624 ~~d~G~Y~C~a  634 (785)
                       +|++.|.|.-
T Consensus        89 -eDtAvYYCAR   98 (127)
T d1n0xh1          89 -ADTAVYYCAR   98 (127)
T ss_dssp             -GGCEEEEEEE
T ss_pred             -CCceEEEEEe
Confidence             9999999964

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.99  E-value=0.0022  Score=50.68  Aligned_cols=69  Identities=13%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.--  .+.|+|.  |+.      |. .+          .|..+..+  .....|.|.+++.
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~   88 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS   88 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence            4568899999999999997544  5788872  211      11 11          23444443  3456799999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|++.|.|....
T Consensus        89 -eDtAvYYCAR~~  100 (125)
T d1rihh1          89 -EDSAVYYCARES  100 (125)
T ss_dssp             -GGCEEEEEEEEC
T ss_pred             -ccceEEEEeeeC
Confidence             999999998654

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.0015  Score=49.77  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=41.4

Q ss_pred             ecCeEEEEEEEecCCCC--ceEEEeC--CEEe------c-C----------CCCeeEEee--CCeEEEEEccCCCCCCce
Q psy2775         572 EKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-S----------SPKKREIFD--GENIILELKEADSETDAG  628 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p--~v~W~~~--~~~i------~-~----------~~~~~~~~~--~~~~~L~i~~~~~~~d~G  628 (785)
                      +|++++|.|.+.|+.-.  -+.|+|.  |+.+      . .          ..|+.+..+  .....|+|.+++. +|++
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~-eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS-EDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC----CCS
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccc-cccE
Confidence            48999999999997554  5889872  2211      1 1          123333332  3456799999999 9999


Q ss_pred             eEEEEEEcCCc
Q psy2775         629 DYKVVATNELG  639 (785)
Q Consensus       629 ~Y~C~a~n~~g  639 (785)
                      .|.|......+
T Consensus        80 vYYCAr~~~~~   90 (103)
T d1oari_          80 VYYCARMWYYG   90 (103)
T ss_dssp             EEEEEEEECSS
T ss_pred             EEEeEEECCCC
Confidence            99998765443

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.95  E-value=0.007  Score=47.70  Aligned_cols=69  Identities=16%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.--  -+.|+|.  |+.      |. .+          .|+.+..+  .....|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            4468899999999999997544  5889872  211      11 11          23334333  2346799999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|++.|.|....
T Consensus        89 -eDTAvYYCAr~~  100 (135)
T d1ieha_          89 -EDTAVYYCAKYS  100 (135)
T ss_dssp             -SSCEEEEEEEBS
T ss_pred             -ccceeeEEEEec
Confidence             999999997653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.95  E-value=0.0025  Score=49.88  Aligned_cols=70  Identities=16%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|+|.+.|+.--  .+.|+|.  |+.      |. .+          .|+.+..+  .....|.|++++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            3467889999999999997654  4789882  211      11 11          23334333  3456799999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|++.|.|...+.
T Consensus        89 -eDTAvYYCAr~~~  101 (122)
T d1bz7b1          89 -EDTAIYYCTRGGT  101 (122)
T ss_dssp             -GGCEEEEEEEECC
T ss_pred             -cCceEEEeecCCC
Confidence             9999999976543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.94  E-value=0.0036  Score=49.09  Aligned_cols=70  Identities=17%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.--  -+.|+|.  |+.      |. .+          .|+.+..+  .....|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            4568899999999999997544  5788882  211      11 11          23334433  3456799999999


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|++.|.|.....
T Consensus        89 -eDtavYYCAr~~~  101 (126)
T d1dfbh1          89 -EDMALYYCVKGRD  101 (126)
T ss_dssp             -GGCEEEEEEEEEC
T ss_pred             -CcceEEEEEeccC
Confidence             9999999986543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.94  E-value=0.0017  Score=50.95  Aligned_cols=69  Identities=14%  Similarity=0.224  Sum_probs=47.5

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.--  .+.|+|.  |+.      +. .+          .++.+..+  .....|+|.+++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            4568899999999999987543  5789873  221      11 11          13334333  3456799999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|++.|.|....
T Consensus        89 -eDtAvYYCAr~~  100 (121)
T d1j05b_          89 -EDTAVYYCAPFG  100 (121)
T ss_dssp             -GGCEEEEEEEEB
T ss_pred             -CcceEEEeEeec
Confidence             999999997653

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.94  E-value=0.0022  Score=50.35  Aligned_cols=68  Identities=16%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             eeeeeecCeEEEEEEEecCCCC----ceEEEeC--CEEe------cCC----------CCeeEEee--CCeEEEEEccCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP----SIVWFRN--NKPL------LSS----------PKKREIFD--GENIILELKEAD  622 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~--~~~i------~~~----------~~~~~~~~--~~~~~L~i~~~~  622 (785)
                      ...+++|++++|.|.+.|+.--    -+.|+|.  |+.+      ..+          .++.+..+  .....|+|.+++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            3467889999999999986422    4679872  2111      111          12333332  234679999999


Q ss_pred             CCCCceeEEEEEE
Q psy2775         623 SETDAGDYKVVAT  635 (785)
Q Consensus       623 ~~~d~G~Y~C~a~  635 (785)
                      . +|++.|.|...
T Consensus        89 ~-eDsAvYyCAr~  100 (123)
T d1r0ah1          89 T-ADTAIYYCAQS  100 (123)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             c-ccceEEeeccc
Confidence            9 99999999754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.92  E-value=0.0029  Score=50.14  Aligned_cols=67  Identities=15%  Similarity=0.309  Sum_probs=46.1

Q ss_pred             eeeeecCeEEEEEEEecCCC--C--ceEEEeC--CEEe------cC----------CCCeeEEee--CCeEEEEEccCCC
Q psy2775         568 KTVKEKGTIRLMAKVKASPA--P--SIVWFRN--NKPL------LS----------SPKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       568 ~~v~~g~~v~l~C~~~g~P~--p--~v~W~~~--~~~i------~~----------~~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ..+++|++++|.|.+.|+.-  .  .+.|+|.  |+.+      ..          ..++.+..+  .....|+|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            46888999999999998632  2  4679872  1111      01          124444444  3356799999999


Q ss_pred             CCCceeEEEEEE
Q psy2775         624 ETDAGDYKVVAT  635 (785)
Q Consensus       624 ~~d~G~Y~C~a~  635 (785)
                       +|++.|.|...
T Consensus        90 -eDtAvYyCAr~  100 (126)
T d1etzb1          90 -SDTATYHCARR  100 (126)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -cccceEEEEEe
Confidence             99999999854

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.91  E-value=0.0033  Score=49.13  Aligned_cols=69  Identities=19%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ecCC-----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLSS-----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~~~-----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.--  -+.|+|.  |+.      |..+           .|+.+..+  .....|.|++++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            4467899999999999987533  4788872  221      1111           23444443  3456799999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|++.|.|....
T Consensus        89 -eDtAvYYCAr~~  100 (121)
T d1ol0a_          89 -EDTAVYYCAREP  100 (121)
T ss_dssp             -GGCEEEEEEECC
T ss_pred             -ccceEEEEEEec
Confidence             999999997653

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.91  E-value=0.0014  Score=51.80  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             eeeeeeeeeeecCeEEEEEEEecCCCCceEEEeC--CEEe---c----CC---------CCeeEEeeCCeEEEEEccCCC
Q psy2775         562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPL---L----SS---------PKKREIFDGENIILELKEADS  623 (785)
Q Consensus       562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~i---~----~~---------~~~~~~~~~~~~~L~i~~~~~  623 (785)
                      ...+....+.+|++++|.|...+.-...+.|||.  |+.+   .    .+         .++... ......|.|..+..
T Consensus         5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~-~~~~~~l~l~~~~~   83 (112)
T d1fo0b_           5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLAT-RVTDTELRLQVANM   83 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEE-EEETTEEEEEEESC
T ss_pred             EeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccc-cccccEEEEecCCc
Confidence            3344566789999999999987665568999994  2211   0    00         011111 11123577777788


Q ss_pred             CCCceeEEEEEEcC
Q psy2775         624 ETDAGDYKVVATNE  637 (785)
Q Consensus       624 ~~d~G~Y~C~a~n~  637 (785)
                       +|++.|.|.+.-.
T Consensus        84 -~dsa~Y~Ca~~~~   96 (112)
T d1fo0b_          84 -SQGRTLYCTCSAD   96 (112)
T ss_dssp             -CSCEEEEEEEESS
T ss_pred             -cCCccEEEEEecC
Confidence             9999999997643

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00096  Score=50.21  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=52.4

Q ss_pred             CCceEeccCCcEEEEEEEeccCCCeEEEeE-CCEEcc-cce-EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE
Q psy2775         120 LHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIK-DRQ-ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA  196 (785)
Q Consensus       120 ~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~-~g~~~~-~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  196 (785)
                      +..+.+.+|+.+.|.|.++ .|..+++-++ ++..+. .+. +..+. ..-++|.++...+.|.|.|.|... |....+.
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dp-k~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~   88 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDS-RKGFIISNATYKEIGLLTCEATVN-GHLYKTN   88 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEET-TTEEEESSCCGGGCEEEEEEEEET-TEEEEEE
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECC-CCCEEEeCCCcccCeEEEEEEEEC-CEEEEEE
Confidence            3457788999999999998 5666665444 555443 332 33333 335899999999999999999776 4444444


Q ss_pred             EEE
Q psy2775         197 NLN  199 (785)
Q Consensus       197 ~l~  199 (785)
                      .|.
T Consensus        89 yl~   91 (95)
T d1fltx_          89 YLT   91 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.88  E-value=0.0015  Score=50.49  Aligned_cols=65  Identities=22%  Similarity=0.314  Sum_probs=45.7

Q ss_pred             cceeCCCCeEEEEEEEccCCCC--eEEEEEC--CEEcc-----------------c--ceEEE--eCCEEEEEEccCCCC
Q psy2775         244 DVSITEGESAVLSVQVGGEPSP--KVEWYKD--GKLIK-----------------D--RQITS--EKNTHTLTLIQCSTK  298 (785)
Q Consensus       244 ~~~~~~G~~~~l~C~~~g~p~~--~v~W~~~--~~~l~-----------------~--~~~~~--~~~~~~l~i~~~~~~  298 (785)
                      ...+++|++++|.|.+.|....  .+.|+|.  |+.+.                 .  ..+..  ..+...|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            4567899999999999886543  6789872  22221                 1  11222  234567999999999


Q ss_pred             CCeEEEEEEE
Q psy2775         299 DKGRYSVKVT  308 (785)
Q Consensus       299 d~G~Y~C~~~  308 (785)
                      |++.|.|.-.
T Consensus        89 DTAvYYCAr~   98 (116)
T d1a2yb_          89 DTARYYCARE   98 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            9999999643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.87  E-value=0.0048  Score=48.16  Aligned_cols=67  Identities=21%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             cceeCCCCeEEEEEEEccCCCC--eEEEEE--CCEEcc--------------------cceEEE--eCCEEEEEEccCCC
Q psy2775         244 DVSITEGESAVLSVQVGGEPSP--KVEWYK--DGKLIK--------------------DRQITS--EKNTHTLTLIQCST  297 (785)
Q Consensus       244 ~~~~~~G~~~~l~C~~~g~p~~--~v~W~~--~~~~l~--------------------~~~~~~--~~~~~~l~i~~~~~  297 (785)
                      ...+++|++++|.|.+.|....  .+.|+|  .|+.+.                    ...+..  ..+...|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            5578899999999999886533  578887  232211                    111222  23355799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy2775         298 KDKGRYSVKVTNK  310 (785)
Q Consensus       298 ~d~G~Y~C~~~n~  310 (785)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (123)
T d1mqkh_          89 EDTAMYYCVRHEY  101 (123)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcccceeEEecCC
Confidence            9999999966543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.86  E-value=0.0038  Score=48.90  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=48.2

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+---  .+.|+|.  |+.      |. .+          .|+.+..+  .....|+|++++.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            4578899999999999997543  5788872  211      11 11          23444443  3457899999999


Q ss_pred             CCCceeEEEEEEc
Q psy2775         624 ETDAGDYKVVATN  636 (785)
Q Consensus       624 ~~d~G~Y~C~a~n  636 (785)
                       +|++.|.|....
T Consensus        89 -eDTAvYYCAr~~  100 (125)
T d1op3h1          89 -EDTAIYYCARKG  100 (125)
T ss_dssp             -GGCEEEEEEEEC
T ss_pred             -ccceeEeEeecc
Confidence             999999998754

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00059  Score=49.31  Aligned_cols=55  Identities=22%  Similarity=0.399  Sum_probs=41.8

Q ss_pred             EecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCC-CCcEEEEEEEee
Q psy2775         427 VSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGL-EDAGEYSCRVGD  491 (785)
Q Consensus       427 v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n  491 (785)
                      -+.|.+|+|+|...+. ..|.|.+++..++....-         .|.+.+++. +++|.|.|...+
T Consensus        11 SISGTtV~LTCP~~~~-~~I~Wkkn~~~i~g~~~~---------~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          11 SISGTSVELTCPLDSD-ENLKWEKNGQELPQKHDK---------HLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEETTEEEEECSSCCC-TTCEEEETTEEECSCCCS---------EEEEESCCTTTSCEEEEEECSS
T ss_pred             EEeCCEEEEECCCCCC-CceEEeeccccCCCCCCc---------EEEEccccccccCcceEEecCC
Confidence            3479999999986653 359999999998755332         477777655 899999997554

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.85  E-value=0.0028  Score=49.37  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=46.9

Q ss_pred             eeeeeecCeEEEEEEEecCCCC--ceEEEeC--CEE------ec-CC----------CCeeEEee--CCeEEEEEccCCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-SS----------PKKREIFD--GENIILELKEADS  623 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~------i~-~~----------~~~~~~~~--~~~~~L~i~~~~~  623 (785)
                      ...+++|++++|.|.+.|+.--  -+.|+|.  |+.      |. .+          .|+.+..+  .....|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            4578899999999999997444  5788873  111      11 11          13333333  3456799999999


Q ss_pred             CCCceeEEEEEE
Q psy2775         624 ETDAGDYKVVAT  635 (785)
Q Consensus       624 ~~d~G~Y~C~a~  635 (785)
                       +|++.|.|...
T Consensus        89 -eDtAvYYCAr~   99 (121)
T d2p49b1          89 -EDTATYYCAAG   99 (121)
T ss_dssp             -GGCEEEEEEES
T ss_pred             -cceeEEeeecc
Confidence             99999999763

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0012  Score=47.10  Aligned_cols=62  Identities=16%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             ecCCcEEEEEEEeCCCceEEEEECCEEcccCCC-EEEEEeCcEEEEEEccCCC-CCcEEEEEEEeec
Q psy2775         428 SRDEKASFEIELTKGDALVKWYKDGKEIAFSEN-VTLSIDGKKQKLIIFSAGL-EDAGEYSCRVGDT  492 (785)
Q Consensus       428 ~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~  492 (785)
                      +.|.+|+|+|.- .....|.|.+++..+...+. ..+..+.  ..|.+.+.+. +++|.|.|.+...
T Consensus         8 ISGTtV~LTCP~-~~~~~i~W~~n~~~~~~~~~~~~~~~~~--~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_           8 ISGTTVILTCPQ-YPGSEILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             EETTEEEEECSS-CTTSCEEEEETTEEESSSCSCTTEEEET--TEEEETTCCHHHHCEEEEEEETTS
T ss_pred             EeCCEEEEECCC-CCCCceeeeeccccccCCCccccccccc--ceEEecccCccccCceEEEEcCCC
Confidence            469999999963 34466999999998875432 1111111  2588888876 7999999999653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.0015  Score=50.63  Aligned_cols=71  Identities=10%  Similarity=0.193  Sum_probs=44.1

Q ss_pred             eeecCeEEEEEEEecC-CCC--ceEEEeCCEEecCCCCeeEEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLLSSPKKREIFDGEN----IILELKEADSETDAGDYKVVATNELGSA  641 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p--~v~W~~~~~~i~~~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  641 (785)
                      ...++.++|.|.+.|+ |+.  .+.|.+|+..+...........++.    +.|.|..-.- .....|+|++.+.....
T Consensus        16 ~~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W-~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          16 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVEC-PEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGS-CTTCEEEEEEEETTSCC
T ss_pred             ccCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHc-cCCCEEEEEEEECCCCC
Confidence            3457889999999995 653  6789998876532111112222332    3566765543 34556999999865543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.83  E-value=0.0039  Score=49.77  Aligned_cols=70  Identities=19%  Similarity=0.296  Sum_probs=48.1

Q ss_pred             eeeeeecCeEEEEEEEecCCCC----ceEEEeC--CEEe------cC----------CCCeeEEeeC--CeEEEEEccCC
Q psy2775         567 EKTVKEKGTIRLMAKVKASPAP----SIVWFRN--NKPL------LS----------SPKKREIFDG--ENIILELKEAD  622 (785)
Q Consensus       567 ~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~--~~~i------~~----------~~~~~~~~~~--~~~~L~i~~~~  622 (785)
                      ...+++|++++|.|.+.|+..-    -+.|+|.  |+.+      ..          ..|+.+..+.  ....|+|.+++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            3468889999999999987532    4789973  1111      00          1244444432  45679999999


Q ss_pred             CCCCceeEEEEEEcC
Q psy2775         623 SETDAGDYKVVATNE  637 (785)
Q Consensus       623 ~~~d~G~Y~C~a~n~  637 (785)
                      . +|++.|.|.....
T Consensus        89 ~-eDtAvYYCAr~~~  102 (132)
T d1tjgh1          89 P-VDTATYFCAHRRG  102 (132)
T ss_dssp             G-GGCEEEEEEEECC
T ss_pred             c-ccceEEEEEEecC
Confidence            9 9999999986643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.83  E-value=0.0023  Score=50.05  Aligned_cols=66  Identities=20%  Similarity=0.345  Sum_probs=45.6

Q ss_pred             cceeCCCCeEEEEEEEccCCC--CeEEEEE--CCEEcc--------------------cceEEE--eCCEEEEEEccCCC
Q psy2775         244 DVSITEGESAVLSVQVGGEPS--PKVEWYK--DGKLIK--------------------DRQITS--EKNTHTLTLIQCST  297 (785)
Q Consensus       244 ~~~~~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~l~--------------------~~~~~~--~~~~~~l~i~~~~~  297 (785)
                      ...+++|++++|.|.+.|...  ..+.|+|  .|+.+.                    ...+..  ..+...|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            456789999999999987543  3678987  233221                    011222  23455799999999


Q ss_pred             CCCeEEEEEEEe
Q psy2775         298 KDKGRYSVKVTN  309 (785)
Q Consensus       298 ~d~G~Y~C~~~n  309 (785)
                      +|++.|.|....
T Consensus        89 eDtA~YYCAr~~  100 (120)
T d1pg7x1          89 NDSAVYYCARED  100 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEeeecC
Confidence            999999997543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00079  Score=48.61  Aligned_cols=54  Identities=19%  Similarity=0.335  Sum_probs=39.8

Q ss_pred             ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775         572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN  636 (785)
Q Consensus       572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n  636 (785)
                      .|.+|+|+|...+.  -.|.|.+++..+......         .|++.+++.-+++|.|.|...+
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~---------~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK---------HLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEETTEEECSCCCS---------EEEEESCCTTTSCEEEEEECSS
T ss_pred             eCCEEEEECCCCCC--CceEEeeccccCCCCCCc---------EEEEccccccccCcceEEecCC
Confidence            48999999997653  469999999998654321         3666675443799999996443

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.82  E-value=0.001  Score=50.88  Aligned_cols=66  Identities=14%  Similarity=0.087  Sum_probs=39.1

Q ss_pred             cCeEEEEEEEecC-CCC-ceEEEeCCEEecCC----CCe-eEE-eeCCeE-EEEEccCCCCCCceeEEEEEEcCCc
Q psy2775         573 KGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS----PKK-REI-FDGENI-ILELKEADSETDAGDYKVVATNELG  639 (785)
Q Consensus       573 g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~----~~~-~~~-~~~~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g  639 (785)
                      ...++|.|.+.|+ |.. .|+|++||+.+...    ... ... ..++.+ +.....+.. ++...|+|.+.....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG-GLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT-TCGGGEEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC-CCCCEEEEEEEeCCC
Confidence            4578999999997 655 89999998765321    111 011 112222 112223344 566789999987543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.00035  Score=54.43  Aligned_cols=68  Identities=15%  Similarity=0.119  Sum_probs=42.1

Q ss_pred             eeecCeEEEEEEEecC-CCC---ceEEEeCCEEecCCCCee-EEeeCC----eEEEEEccCCCCCCce-eEEEEEEcCCc
Q psy2775         570 VKEKGTIRLMAKVKAS-PAP---SIVWFRNNKPLLSSPKKR-EIFDGE----NIILELKEADSETDAG-DYKVVATNELG  639 (785)
Q Consensus       570 v~~g~~v~l~C~~~g~-P~p---~v~W~~~~~~i~~~~~~~-~~~~~~----~~~L~i~~~~~~~d~G-~Y~C~a~n~~g  639 (785)
                      ...+.+++|.|.+.|+ |.+   +|+|++||..+....... ....++    .+.|.|..-.  -+.| .|+|.+.+..-
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~--W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERD--WLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHH--HHTTCCEEEEEECSSS
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHH--hcCCCEEEEEEEeCCC
Confidence            3457789999999985 653   789999998875432111 112222    2345554322  1345 49999998653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.80  E-value=0.0023  Score=49.61  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=45.5

Q ss_pred             CcceeCCCCeEEEEEEEccCCC--CeEEEEE--CCEEcc--------------------cceEEE--eCCEEEEEEccCC
Q psy2775         243 HDVSITEGESAVLSVQVGGEPS--PKVEWYK--DGKLIK--------------------DRQITS--EKNTHTLTLIQCS  296 (785)
Q Consensus       243 ~~~~~~~G~~~~l~C~~~g~p~--~~v~W~~--~~~~l~--------------------~~~~~~--~~~~~~l~i~~~~  296 (785)
                      ....+++|+++.|.|.+.|...  -.+.|+|  .|+-+.                    ...+..  ..+...|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            3567889999999999988653  3678887  232221                    111111  2345679999999


Q ss_pred             CCCCeEEEEEEE
Q psy2775         297 TKDKGRYSVKVT  308 (785)
Q Consensus       297 ~~d~G~Y~C~~~  308 (785)
                      .+|++.|.|.-.
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999543