Psyllid ID: psy2776
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 803 | 2.2.26 [Sep-21-2011] | |||||||
| Q9I7U4 | 18141 | Titin OS=Drosophila melan | yes | N/A | 0.306 | 0.013 | 0.399 | 2e-46 | |
| A2ASS6 | 35213 | Titin OS=Mus musculus GN= | no | N/A | 0.834 | 0.019 | 0.213 | 4e-22 | |
| Q8WZ42 | 34350 | Titin OS=Homo sapiens GN= | no | N/A | 0.838 | 0.019 | 0.218 | 3e-21 | |
| Q00872 | 1141 | Myosin-binding protein C, | no | N/A | 0.283 | 0.199 | 0.305 | 3e-19 | |
| Q23551 | 7158 | Twitchin OS=Caenorhabditi | yes | N/A | 0.257 | 0.028 | 0.313 | 1e-18 | |
| Q90688 | 1272 | Myosin-binding protein C, | no | N/A | 0.275 | 0.173 | 0.292 | 2e-18 | |
| Q5PQM4 | 355 | Myosin-binding protein H- | no | N/A | 0.281 | 0.636 | 0.292 | 8e-18 | |
| Q5FW53 | 355 | Myosin-binding protein H- | no | N/A | 0.281 | 0.636 | 0.292 | 8e-18 | |
| Q13203 | 477 | Myosin-binding protein H | no | N/A | 0.282 | 0.475 | 0.290 | 8e-17 | |
| P16419 | 1132 | Myosin-binding protein C, | no | N/A | 0.261 | 0.185 | 0.306 | 1e-16 |
| >sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 147/248 (59%), Gaps = 2/248 (0%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SA LTI K D D G+YT+ L N +G+A A+ + ++ P AP TP+ + S+
Sbjct: 17329 IDEQSAKLTIKKVVDDDEGEYTVKLVNPVGEAEASLHLVIMRKPTAPGTPQPLEIMHDSI 17388
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAV 119
TL+W+ P+DDG S + Y+LE D E W +I + TTY ++KL EY+FR AV
Sbjct: 17389 TLYWKAPEDDGKSEIIEYILEYQDVKEEK-WTEIRKIKDTTYTISKLKIDTEYVFRSIAV 17447
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N +G P S + + + V+ +AP +QEPL+D V+ VTL CV G+P P + W
Sbjct: 17448 NEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDKEVTLSCVFGGIPEPKVTWK 17507
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
K+ + + R+I YEN VA++T+ + +E YTC ATNE G+AETSC L +Q K + E
Sbjct: 17508 KNGQVFESRSIRYENRVAKYTIEKTTIETEATYTCVATNEKGSAETSCRLKLQQKPVLEV 17567
Query: 240 ARHIITAR 247
+T +
Sbjct: 17568 EDKYLTQK 17575
|
Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Drosophila melanogaster (taxid: 7227) |
| >sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 188/882 (21%), Positives = 341/882 (38%), Gaps = 212/882 (24%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE--------- 51
+++A L I + E D G YT S +N G + + +T+ P + P+
Sbjct: 5613 FHDNTAFLEISQLEGTDSGTYTCSATNKAGHSQCSGHLTVKEPPYFVEKPQSQDVNPGTR 5672
Query: 52 -----IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL 106
+VG + + +T+ W +D+ E H VW + TST E+
Sbjct: 5673 VQLKALVGGT-APMTIKWF--KDNK---------ELHPGAARSVWK--DDTSTILELFSA 5718
Query: 107 TTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC 166
+ N +GT + + + VK P I++P V S T EC
Sbjct: 5719 KAADSGTYICQLSNDVGT---TSSKATIFVKEPPQ----FIKKPSPVLVLRNGQSTTFEC 5771
Query: 167 VVSGVPTPDIKWYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
V+G P + WY D + I + I++ + +A F + N + G Y C+A N+AGTA
Sbjct: 5772 QVTGTPEIRVSWYLDGNEITDLRKYGISFVDGLATFQISNARVENSGTYVCEARNDAGTA 5831
Query: 224 ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALN--------VKS 275
SC++ ++ +KE I R+L V +D + ++ + +K+
Sbjct: 5832 --SCSIELK---VKEPPIFI-------RELEPVEVVKDSDVELECEVMGTTPFEVTWLKN 5879
Query: 276 VSKLKWLARWTSDLESTAWFWWFESKSTPA---------------------------VEF 308
+++ ++T E + F+ +K P+ F
Sbjct: 5880 NKEIRSGKKYTMS-EKMSVFYLHITKCDPSDVGEYQCIIANEGGSCACSARVALKEPPSF 5938
Query: 309 LSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKE------------------- 348
+ K+ +VT V ATFQ ++ SP I + WLK + ++E
Sbjct: 5939 IKKIENVTTVLK-SSATFQSTVAGSPPISITWLKDDQILEENDNVHISFEDSVATLQVRS 5997
Query: 349 -----SARHIITSR---GTQR----------KLVIKR-----VTQDDETDIGVLALNVKS 385
S R+ ++ G +R +I++ VT+ D + +
Sbjct: 5998 VDNGHSGRYTCQAKNESGIERCYAFLLVQEPAQIIEKAKSVDVTEKDPVTLECVVAGTPE 6057
Query: 386 VSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 445
+ K+KWL G S+Y ++++ENNVA F + + + G+YT K N+
Sbjct: 6058 L-KVKWLK--DGKQIVPSRY--------FSMSFENNVASFRIQSVMKQDSGQYTFKVEND 6106
Query: 446 AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQ 505
G++ S LR D + P + L K+
Sbjct: 6107 FGSS-----------SCDAYLRVLDQDIPPSFTKKLTKMD-------------------- 6135
Query: 506 PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETST 565
K++ S++ +E K G W K+G EI+ S R+ E T +
Sbjct: 6136 ---KVLGSSIH-----------MECKVSGSLPISAQWFKDGKEISTSAKYRLVCHENTVS 6181
Query: 566 IAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV---LGYIIQQQEKNSLKFTKV---ATL 619
+ + ++ DT+ YT +N AG + L V ++++ + + ++ + V A L
Sbjct: 6182 LEVSNLELEDTANYTCKVSNVAGDNACSGILTVKEPPSFLVKPERQQAIPDSTVEFKAVL 6241
Query: 620 DPSTLQYTVENLRDKSEY---------------YFQVFAENSVGLGPEAT--TELVALAT 662
T + ++ L+D E + +++ +S G T V +
Sbjct: 6242 K-GTPPFKIKWLKDDVELVSGPKCFIGLEGSTSFLNLYSVDSSKTGQYTCQVTNDVGSDS 6300
Query: 663 HATLGSPGQAPLFIERFE-EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
T+ + P F+++ E K +K + RL K+ SP +VW+RN L +S K +
Sbjct: 6301 CTTMLLVTEPPKFVKKLEASKIIKAGDSARLECKITGSPEIQVVWYRNEHELTASDKYQM 6360
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
F ++++ +E D+GD+ A N GS + +V V
Sbjct: 6361 TFIDSVAVIQMNSLGTE-DSGDFICEAQNPAGSTSCSTKVIV 6401
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 192/879 (21%), Positives = 334/879 (37%), Gaps = 206/879 (23%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE--------- 51
+++A L I + E D G YT S +N G + +T+ P + P+
Sbjct: 5652 FHDNTAFLEISQLEGTDSGTYTCSATNKAGHNQCSGHLTVKEPPYFVEKPQSQDVNPNTR 5711
Query: 52 -----IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL 106
+VG + + +T+ W +D+ E H VW +TS K
Sbjct: 5712 VQLKALVGGT-APMTIKWF--KDNK---------ELHSGAARSVWKDDTSTSLELFAAKA 5759
Query: 107 TTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP-VIQEPLKDSVAGFQSSVTLE 165
T Y+ +++ N +GT S T +V E P I++P V S T E
Sbjct: 5760 TDSGTYICQLS--NDVGTA-TSKATLFV-------KEPPQFIKKPSPVLVLRNGQSTTFE 5809
Query: 166 CVVSGVPTPDIKWYKDD---SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
C ++G P + WY D + I+ I++ + +A F + + G Y C+A N+AGT
Sbjct: 5810 CQITGTPKIRVSWYLDGNEITAIQKHGISFIDGLATFQISGARVENSGTYVCEARNDAGT 5869
Query: 223 AETSCTLLVQ---------------------------------------GKEIKESARHI 243
A S L V+ +EI+ S ++
Sbjct: 5870 ASCSIELKVKEPPTFIRELKPVEVVKYSDVELECEVTGTPPFEVTWLKNNREIRSSKKYT 5929
Query: 244 ITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKST 303
+T R + L +T+ D +D G V +++ S + K
Sbjct: 5930 LTDRVSVFNL---HITKCDPSDTGEYQCIV------------SNEGGSCSCSTRVALKEP 5974
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRK 362
P+ F+ K+ + T V ATFQ ++ SP I + WLK + + E I+ +
Sbjct: 5975 PS--FIKKIENTTTVLK-SSATFQSTVAGSPPISITWLKDDQILDEDDNVYISFVDSVAT 6031
Query: 363 LVIK--------RVTQDDETDIGV--------LALNVKSVSKLKWLDFG----------- 395
L I+ R T + + GV + + V K K +D
Sbjct: 6032 LQIRSVDNGHSGRYTCQAKNESGVERCYAFLLVQEPAQIVEKAKSVDVTEKDPMTLECVV 6091
Query: 396 SGGWWFESKYKDDS--LIKGR--NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+G + K+ D ++ R ++++ENNVA F + + + G+YT K N+ G++
Sbjct: 6092 AGTPELKVKWLKDGKQIVPSRYFSMSFENNVASFRIQSVMKQDSGQYTFKVENDFGSS-- 6149
Query: 452 RTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLV 511
S LR D + P + L K+ K++
Sbjct: 6150 ---------SCDAYLRVLDQNIPPSFTKKLTKMD-----------------------KVL 6177
Query: 512 DSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV 571
S++ +E K G W K+G EI+ S R+ E + ++ + ++
Sbjct: 6178 GSSI-----------HMECKVSGSLPISAQWFKDGKEISTSAKYRLVCHERSVSLEVNNL 6226
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQV---LGYIIQQQEKNSLKFTKV--ATLDPSTLQY 626
DT+ YT +N AG + L V ++++ + ++ + V + T +
Sbjct: 6227 ELEDTANYTCKVSNVAGDDACSGILTVKEPPSFLVKPGRQQAIPDSTVEFKAILKGTPPF 6286
Query: 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVAL-----------ATHAT--LGSPG--- 670
++ +D E + + +G E +T + L H T +GS
Sbjct: 6287 KIKWFKDDVE----LVSGPKCFIGLEGSTSFLNLYSVDASKTGQYTCHVTNDVGSDSCTT 6342
Query: 671 -----QAPLFIERFE-EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
+ P F+++ E K VK + RL K+ SP +VWFRN L +S K R F
Sbjct: 6343 MLLVTEPPKFVKKLEASKIVKAGDSSRLECKIAGSPEIRVVWFRNEHELPASDKYRMTFI 6402
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
++++ +E D+GD+ A N GS + +V V
Sbjct: 6403 DSVAVIQMNNLSTE-DSGDFICEAQNPAGSTSCSTKVIV 6440
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q00872|MYPC1_HUMAN Myosin-binding protein C, slow-type OS=Homo sapiens GN=MYBPC1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 109/249 (43%), Gaps = 21/249 (8%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
E + I K E G Y + + +A+ + ++ PG P +I +V L
Sbjct: 891 ETDTIIFIRKAERSHSGKYDLQVKVDKFVETASIDIQIIDRPGPPQIVKIEDVWGENVAL 950
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDE---FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAV 119
W PP+DDG++ +TGY ++ DK F V TS T +T+L +EY FRV +
Sbjct: 951 TWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSAT--ITELVIGNEYYFRVFSE 1008
Query: 120 NAIGTGPASHNTRYVVV--------KAPVD-----AEAPVIQEPLKDSVAGFQSSVTLEC 166
N G + T+ V K PV +EAP+ +PL ++ A + TL C
Sbjct: 1009 NMCGLSEDATMTKESAVIARDGKIYKNPVYEDFDFSEAPMFTQPLVNTYAIAGYNATLNC 1068
Query: 167 VVSGVPTPDIKWYKDDSLI--KGRNITYENN-VARFTVVNCSESSEGRYTCKATNEAGTA 223
V G P P I W K+ I R + N V + S G Y CKA N+ GT
Sbjct: 1069 SVRGNPKPKITWMKNKVAIVDDPRYRMFSNQGVCTLEIRKPSPYDGGTYCCKAVNDLGTV 1128
Query: 224 ETSCTLLVQ 232
E C L V+
Sbjct: 1129 EIECKLEVK 1137
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. Homo sapiens (taxid: 9606) |
| >sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 7/214 (3%)
Query: 26 SNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE---S 82
S+AL T PG TP++V V+L W PP+ DG +P+T YV+E
Sbjct: 2268 SDALSTDKDTKAKNPYDEPGKTGTPDVVDWDADRVSLEWEPPKSDGGAPITQYVIEKKGK 2327
Query: 83 HDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
H +D + K+ T E+ L EY FRV AVN G G AS +R VV K P +
Sbjct: 2328 HGRD-WQECGKVSGDQTNAEILGLKEGEEYQFRVKAVNKAGPGEASDPSRKVVAK-PRNL 2385
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN--VARFT 200
+ + +E +K + V + V G P P +W ++ + + I E+ RF
Sbjct: 2386 KPWIDREAMKTITIKVGNDVEFDVPVRGEPPPKKEWIFNEKPVDDQKIRIESEDYKTRFV 2445
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + G YT ATN +G+ + S ++V GK
Sbjct: 2446 LRGATRKHAGLYTLTATNASGSDKHSVEVIVLGK 2479
|
Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type OS=Gallus gallus GN=MYBPC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 109/246 (44%), Gaps = 25/246 (10%)
Query: 8 LTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP 67
L I K E G Y ++L + + ++ PG P ++ +V L W PP
Sbjct: 1028 LFIRKAELHHSGAYEVTLQIENMTDTVAITIQIIDKPGPPQNIKLADVWGFNVALEWTPP 1087
Query: 68 QDDGHSPVTGYVLESHDK---DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG- 123
QDDG++ + GY ++ DK + + V++ T+ V+ L +EY FRV + N G
Sbjct: 1088 QDDGNAQILGYTVQKADKKTMEWYTVYDHYRRTNCV--VSDLIMGNEYFFRVFSENLCGL 1145
Query: 124 --TGPASHNTRYV-----VVKAPVD-----AEAPVIQEPL--KDSVAGFQSSVTLECVVS 169
T + N Y+ K P +E P PL + +AG+ + TL C V
Sbjct: 1146 SETAATTKNPAYIQKTGTTYKPPSYKEHDFSEPPKFTHPLVNRSVIAGYNT--TLSCAVR 1203
Query: 170 GVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
G+P P I WYK+ + G + + V + + G YTCKA NE G AE
Sbjct: 1204 GIPKPKIFWYKNKVDLSGDAKYRMFSKQGVLTLEIRKPTPLDGGFYTCKAVNERGEAEIE 1263
Query: 227 CTLLVQ 232
C L V+
Sbjct: 1264 CRLDVR 1269
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle A bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. May be involved in the early phase of myofibrillogenesis. Gallus gallus (taxid: 9031) |
| >sp|Q5PQM4|MBPHL_RAT Myosin-binding protein H-like OS=Rattus norvegicus GN=Mybphl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 27/253 (10%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
E + L I + + D G Y + + QA+AT + ++ PG P + ++V ++ TL
Sbjct: 106 EHDSILFIREAQRTDSGCYQLCVQLGGLQATATINILVIEKPGPPQSIKLVDVWGANATL 165
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDE---FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAV 119
W PPQD G++ + GY ++ DK F V + TS V+ L + Y FRV A
Sbjct: 166 EWTPPQDTGNTALLGYTVQKADKKSGLWFTVLERYHRTSCI--VSDLIVGNSYAFRVFAE 223
Query: 120 NAIG---TGPASHNTRYVVVKAPVD----------AEAPVIQEPLKD--SVAGFQSSVTL 164
N G T P + + ++ A V +EAP +PL D +V G+ + L
Sbjct: 224 NQCGLSDTAPVTADLAHIQKAATVYKAKGFAQRDLSEAPKFTQPLADCTTVTGYDTQ--L 281
Query: 165 ECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVARFTVVNCSESSEGRYTCKATNEA 220
C V P P I W K+ ++G N Y + + + S G YTCKA N
Sbjct: 282 FCCVRASPKPKIIWLKNKMDLQG-NPKYRALSQLGICSLEIRKPSPFDGGIYTCKAINAL 340
Query: 221 GTAETSCTLLVQG 233
G A C + V+
Sbjct: 341 GEASVDCRVDVKA 353
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q5FW53|MBPHL_MOUSE Myosin-binding protein H-like OS=Mus musculus GN=Mybphl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 27/253 (10%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
E + L I + + D G Y + + QA+AT + ++ PG P + ++V ++ TL
Sbjct: 106 EHDSILFIREAQRTDSGCYQLCVQLGGLQATATINILVIEKPGPPQSIKLVDVWGANATL 165
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDE---FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAV 119
W PPQD G++ + GY ++ DK F V + TS V+ L + Y FRV A
Sbjct: 166 EWTPPQDTGNTALLGYTVQKADKKSGLWFTVLERYHRTSCV--VSNLIVGNSYAFRVFAE 223
Query: 120 NAIG---TGPASHNTRYVVVKAPVD----------AEAPVIQEPLKD--SVAGFQSSVTL 164
N G T P + + ++ A V +EAP +PL D +V G+ + L
Sbjct: 224 NQCGLSDTAPVTADLAHIQKAATVYKAKGFAQRDLSEAPKFTQPLADCTTVTGYDTQ--L 281
Query: 165 ECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVARFTVVNCSESSEGRYTCKATNEA 220
C V P P I W K+ ++G N Y + + + S G YTCKA N
Sbjct: 282 FCCVRASPRPKIIWLKNKMDLQG-NPKYRALSQLGICSLEIRKPSPFDGGIYTCKAINAL 340
Query: 221 GTAETSCTLLVQG 233
G A C + V+
Sbjct: 341 GEASVDCRVDVKA 353
|
Mus musculus (taxid: 10090) |
| >sp|Q13203|MYBPH_HUMAN Myosin-binding protein H OS=Homo sapiens GN=MYBPH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 110/255 (43%), Gaps = 28/255 (10%)
Query: 8 LTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP 67
L I + D G Y +++ +A A + ++ PG P + ++ + L W PP
Sbjct: 231 LFIRSAQRSDSGRYELTVRVEDLEAKAVIDILVIEKPGPPSSIRLLDVWGCNAALQWTPP 290
Query: 68 QDDGHSPVTGYVLESHDKDE---FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGT 124
QD G++ + GY+++ DK F V + T+ T ++ L + Y FRV + N G
Sbjct: 291 QDTGNTELLGYMVQKADKKTGQWFTVLERYHPTTCT--ISDLIIGNSYSFRVFSENLCGL 348
Query: 125 GPASHNTRYV--VVKAPVDA-----------EAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
++ T+ + + KA + A EAP +PL D + S L C V
Sbjct: 349 STSATVTKELAHIQKADIAAKPKGFIERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRAS 408
Query: 172 PTPDIKWYKDDSLIKGRNITY----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSC 227
P P I W K+ I+G N Y E V + S G YTCKA N G A C
Sbjct: 409 PKPKIIWMKNKMEIQG-NPKYRALSEQGVCTLEIRKPSPFDSGVYTCKAINVLGEASVDC 467
Query: 228 TLLVQGKEIKESARH 242
L E+K SA H
Sbjct: 468 RL-----EVKASAAH 477
|
Binds to myosin; probably involved in interaction with thick myofilaments in the A-band. Homo sapiens (taxid: 9606) |
| >sp|P16419|MYPC2_CHICK Myosin-binding protein C, fast-type OS=Gallus gallus GN=MYBPC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 107/235 (45%), Gaps = 25/235 (10%)
Query: 19 GDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
G+Y + + + AT ++ ++ PG P ++ S+ L W PP+DDG++ ++GY
Sbjct: 899 GNYEMRVRIDNMEDCATLRLRVVERPGPPQAVRVMEVWGSNALLQWEPPKDDGNAEISGY 958
Query: 79 VLESHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG--PA-SHNT-- 131
++ D M W + + T V++L +EY FRV + N GT PA SHNT
Sbjct: 959 TVQKADT-RTMEWFTVLEHSRPTRCTVSELVMGNEYRFRVYSENVCGTSQEPATSHNTAR 1017
Query: 132 --------RYVVVKAPVDAEAPVIQEPLKDS--VAGFQSSVTLECVVSGVPTPDIKWYKD 181
+ V K AP PL D VAG+ +VTL C V G P P + W K+
Sbjct: 1018 IAKEGLTLKMVPYKERDLRAAPQFLTPLVDRSVVAGY--TVTLNCAVRGHPKPKVTWLKN 1075
Query: 182 DSLIKGRNITYEN----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
I G + + + V + G Y C+A NE G A T C L V+
Sbjct: 1076 SVEI-GADPKFLSRHGLGVLSLLIRRPGPFDGGTYGCRAVNEMGEATTECRLDVR 1129
|
Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 803 | ||||||
| 328725467 | 3009 | PREDICTED: titin-like [Acyrthosiphon pis | 0.185 | 0.049 | 0.524 | 1e-68 | |
| 307204651 | 7323 | Titin [Harpegnathos saltator] | 0.287 | 0.031 | 0.474 | 2e-54 | |
| 328784395 | 19028 | PREDICTED: LOW QUALITY PROTEIN: hypothet | 0.287 | 0.012 | 0.444 | 4e-52 | |
| 157109548 | 4604 | myosin light chain kinase [Aedes aegypti | 0.287 | 0.050 | 0.433 | 1e-50 | |
| 321467015 | 503 | hypothetical protein DAPPUDRAFT_53754 [D | 0.287 | 0.459 | 0.406 | 1e-45 | |
| 195587132 | 8412 | GD13415 [Drosophila simulans] gi|1941953 | 0.306 | 0.029 | 0.403 | 2e-45 | |
| 195336800 | 4635 | GM14147 [Drosophila sechellia] gi|194128 | 0.306 | 0.053 | 0.403 | 3e-45 | |
| 442629645 | 15481 | sallimus, isoform S [Drosophila melanoga | 0.306 | 0.015 | 0.399 | 1e-44 | |
| 442629655 | 18031 | sallimus, isoform X [Drosophila melanoga | 0.306 | 0.013 | 0.399 | 1e-44 | |
| 442629639 | 18468 | sallimus, isoform P [Drosophila melanoga | 0.306 | 0.013 | 0.399 | 1e-44 |
| >gi|328725467|ref|XP_001944283.2| PREDICTED: titin-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 118/225 (52%), Positives = 160/225 (71%)
Query: 8 LTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP 67
LTI K E+ D G T+ L N G+ +A + ++ PG P P+++ +D+SVTLHW+PP
Sbjct: 2219 LTISKIEEVDTGVLTLKLKNTFGETTADMNIIVIKVPGEPGVPDVIEVTDTSVTLHWKPP 2278
Query: 68 QDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPA 127
Q DG+SP+ GYV+E HDKDEFMVW+K++ T TT+EVT L T HE MF+VAA+N G GP+
Sbjct: 2279 QFDGNSPIEGYVVEYHDKDEFMVWHKVQVTDTTHEVTSLVTGHEIMFKVAAINCAGIGPS 2338
Query: 128 SHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG 187
SHNT+Y+ + +P PVIQEPL D G S L+CV++G PTPDIKW K+ +L K
Sbjct: 2339 SHNTKYIKMASPGSFTPPVIQEPLSDLSIGMGKSAVLQCVITGKPTPDIKWLKNKTLYKT 2398
Query: 188 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
++ ++EN+VA+ T C+ES+ G YTC+ATN AGTA+TSC L VQ
Sbjct: 2399 KSASFENHVAKLTFAECNESTTGTYTCQATNGAGTAQTSCKLSVQ 2443
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307204651|gb|EFN83273.1| Titin [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 150/234 (64%), Gaps = 3/234 (1%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SA LTI ++KD+GDY + L N G+ S V ++ PGAP TPE + +D+S+
Sbjct: 6498 IDECSAVLTIRDVQEKDIGDYNLKLINPHGEDSIEINVIVVQVPGAPGTPEPLEITDNSI 6557
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT--STTYEVTKLTTKHEYMFRVAA 118
TLHW+ P DGHSP+ Y+LE +K E W+K+ T TTY++TKLTT EY FRV A
Sbjct: 6558 TLHWKQPDSDGHSPIVEYILEYREKTESS-WSKVTETINETTYKMTKLTTNKEYTFRVTA 6616
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
VN G G AS NT Y+ + +E+P I E L+ V G +VTL CV+ G+PTP I W
Sbjct: 6617 VNEAGPGEASPNTPYLKISKLSASESPTILEALQSVVIGLGETVTLSCVIGGIPTPHITW 6676
Query: 179 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+K+D + NITYEN V ++TV +E+S +T KA N+AGTAETSC L +Q
Sbjct: 6677 FKNDVAFEDSNITYENRVTKYTVRQTTETSSATFTVKAHNDAGTAETSCQLKIQ 6730
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328784395|ref|XP_623653.3| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC551259 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 149/234 (63%), Gaps = 3/234 (1%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E+SA LTI K +++D+GDYT+ L N +G+AS V ++ P AP PE + +++SV
Sbjct: 18230 IDEESAILTIRKIQEEDVGDYTLKLVNNVGEASIEINVVIVQVPSAPGAPEPLEITENSV 18289
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT--STTYEVTKLTTKHEYMFRVAA 118
TLHW+ P +G+SP+ Y+LE +K E W KI T TT++VTKLTT EY FRV A
Sbjct: 18290 TLHWKKPDSNGNSPIVEYILEHQEKTE-TTWTKIAETIKETTHKVTKLTTNKEYTFRVTA 18348
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
N G G S + Y+ + P AE P+I EPLK V G +V+L CV+ G P P+I W
Sbjct: 18349 ANEAGPGETSPTSPYIKITKPSAAEPPIILEPLKSVVVGLGETVSLTCVIGGTPAPEITW 18408
Query: 179 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
++ + + NITYEN V+++T+ +E+S +T KA N+ GTAET+C L VQ
Sbjct: 18409 LRNGEIFEDINITYENRVSKYTITRTTETSSASFTVKAKNDIGTAETTCELKVQ 18462
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157109548|ref|XP_001650719.1| myosin light chain kinase [Aedes aegypti] gi|108878983|gb|EAT43208.1| AAEL005319-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 149/233 (63%), Gaps = 2/233 (0%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
E++A+LTI K + D GDYT+ L N G ASA+ + + PGAPD PE +D S+TL
Sbjct: 3796 EETASLTIKKVVESDAGDYTVRLVNECGDASASFTLIVKRQPGAPDAPEATQITDDSITL 3855
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH-EYMFRVAAVNA 121
W+ P+D+G+S +T Y+LE +K + W +I S T TK+ EY FRV AVN
Sbjct: 3856 FWKSPEDNGNSTITEYILEYQEKSKKK-WTEITNISETTTTVTKLTKNSEYTFRVTAVNE 3914
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD 181
+G GPAS N+ Y + AP+ EAPV+ E LKD G ++TL C+V+GVPTP++ WY++
Sbjct: 3915 MGKGPASPNSPYYKIAAPIKKEAPVVSEHLKDVHIGLDQTITLTCIVNGVPTPEVSWYRN 3974
Query: 182 DSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ +K + ITYEN A++ +V ++ + G Y CKA NE G+ E+SC ++++ K
Sbjct: 3975 GTALKEKTITYENGAAKYVIVKTTKETSGTYVCKAVNEVGSVESSCKVVIEEK 4027
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321467015|gb|EFX78007.1| hypothetical protein DAPPUDRAFT_53754 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 148/236 (62%), Gaps = 5/236 (2%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
+ E SA LT+ ++ + G YT LSN G S + + L+ P +P PE + +D S+
Sbjct: 68 ISETSAQLTLKLVDENEAGVYTCKLSNECGDVSVSVTIKLMEKPCSPSVPECLETADDSI 127
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKD--EFMVWNK-IETTSTTYEVTKLTTKHEYMFRVA 117
T+ W+PP +G S + Y++E +K +++ NK + T TTY VT+LT EY FRV
Sbjct: 128 TIMWKPPGYNGGSTIINYIVEYQEKQTKKWITANKDVVITETTYMVTRLTHNTEYRFRVT 187
Query: 118 AVNAIGTG-PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI 176
AVN +G G P+S + Y KA + EAPVI+EPLKD AG + + TL C++ GVP P +
Sbjct: 188 AVNTVGPGTPSSESLLYKAAKAAI-PEAPVIREPLKDLTAGLKETATLSCIIVGVPQPTL 246
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+W+KDD ++ +YE+ +AR + N +E S G+Y+C+A+N++G+ E SCTL++Q
Sbjct: 247 RWFKDDDEFVPKSSSYESGLARLILNNTNEESAGQYSCRASNDSGSCECSCTLIIQ 302
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195587132|ref|XP_002083319.1| GD13415 [Drosophila simulans] gi|194195328|gb|EDX08904.1| GD13415 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 2/248 (0%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SATLTI K D D G+YT+ L N +G+A A+ + ++ P AP TP+ + S+
Sbjct: 7620 IDEQSATLTIKKVVDDDEGEYTVKLVNPVGEAEASLHLVIMRKPTAPGTPQPLEIMHDSI 7679
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAV 119
TL+W+ P+DDG S + Y+LE HD E W +I + TTY ++KL EY+FR AV
Sbjct: 7680 TLYWKAPEDDGKSEIIEYILEYHDVKEEK-WTEIRKIKDTTYTISKLKIDTEYVFRSIAV 7738
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N +G P S + + + V+ +AP +QEPL+D V+ VTL CV G+P P + W
Sbjct: 7739 NEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDKEVTLSCVFGGIPEPKVTWK 7798
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
K+ + + +I YEN VA++T+ + +E YTC ATNE G+AETSC L +Q K + E
Sbjct: 7799 KNGQVFESSSIRYENRVAKYTIEKTTIETEATYTCVATNEKGSAETSCRLKLQQKPVLEV 7858
Query: 240 ARHIITAR 247
+T +
Sbjct: 7859 EDKYLTQK 7866
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195336800|ref|XP_002035021.1| GM14147 [Drosophila sechellia] gi|194128114|gb|EDW50157.1| GM14147 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 2/248 (0%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SATLTI K D D G+YT+ L N +G+A A+ + ++ P AP TP+ + S+
Sbjct: 3843 IDEQSATLTIKKVVDDDEGEYTVKLVNPVGEAEASLHLVIMRKPTAPGTPQPLEIMHDSI 3902
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAV 119
TL+W+ P+DDG S + Y+LE HD E W +I + TTY ++KL EY+FR AV
Sbjct: 3903 TLYWKAPEDDGKSEIIEYILEYHDVKEEK-WTEIRKIKDTTYTISKLKIDTEYVFRSIAV 3961
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N +G P S + + + V+ +AP +QEPL+D V+ VTL CV G+P P + W
Sbjct: 3962 NEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDKEVTLSCVFGGIPEPKVTWK 4021
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
K+ + + +I YEN VA++T+ + +E YTC ATNE G+AETSC L +Q K + E
Sbjct: 4022 KNGQVFESSSIRYENRVAKYTIEKTTIETEATYTCVATNEKGSAETSCRLKLQQKPVLEV 4081
Query: 240 ARHIITAR 247
+T +
Sbjct: 4082 EDKYLTQK 4089
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442629645|ref|NP_001261307.1| sallimus, isoform S [Drosophila melanogaster] gi|440215175|gb|AGB94002.1| sallimus, isoform S [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 147/248 (59%), Gaps = 2/248 (0%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SA LTI K D D G+YT+ L N +G+A A+ + ++ P AP TP+ + S+
Sbjct: 14689 IDEQSAKLTIKKVVDDDEGEYTVKLVNPVGEAEASLHLVIMRKPTAPGTPQPLEIMHDSI 14748
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAV 119
TL+W+ P+DDG S + Y+LE D E W +I + TTY ++KL EY+FR AV
Sbjct: 14749 TLYWKAPEDDGKSEIIEYILEYQDVKEEK-WTEIRKIKDTTYTISKLKIDTEYVFRSIAV 14807
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N +G P S + + + V+ +AP +QEPL+D V+ VTL CV G+P P + W
Sbjct: 14808 NEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDKEVTLSCVFGGIPEPKVTWK 14867
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
K+ + + R+I YEN VA++T+ + +E YTC ATNE G+AETSC L +Q K + E
Sbjct: 14868 KNGQVFESRSIRYENRVAKYTIEKTTIETEATYTCVATNEKGSAETSCRLKLQQKPVLEV 14927
Query: 240 ARHIITAR 247
+T +
Sbjct: 14928 EDKYLTQK 14935
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442629655|ref|NP_001261312.1| sallimus, isoform X [Drosophila melanogaster] gi|440215180|gb|AGB94007.1| sallimus, isoform X [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 147/248 (59%), Gaps = 2/248 (0%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SA LTI K D D G+YT+ L N +G+A A+ + ++ P AP TP+ + S+
Sbjct: 17239 IDEQSAKLTIKKVVDDDEGEYTVKLVNPVGEAEASLHLVIMRKPTAPGTPQPLEIMHDSI 17298
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAV 119
TL+W+ P+DDG S + Y+LE D E W +I + TTY ++KL EY+FR AV
Sbjct: 17299 TLYWKAPEDDGKSEIIEYILEYQDVKEEK-WTEIRKIKDTTYTISKLKIDTEYVFRSIAV 17357
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N +G P S + + + V+ +AP +QEPL+D V+ VTL CV G+P P + W
Sbjct: 17358 NEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDKEVTLSCVFGGIPEPKVTWK 17417
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
K+ + + R+I YEN VA++T+ + +E YTC ATNE G+AETSC L +Q K + E
Sbjct: 17418 KNGQVFESRSIRYENRVAKYTIEKTTIETEATYTCVATNEKGSAETSCRLKLQQKPVLEV 17477
Query: 240 ARHIITAR 247
+T +
Sbjct: 17478 EDKYLTQK 17485
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442629639|ref|NP_001261304.1| sallimus, isoform P [Drosophila melanogaster] gi|440215172|gb|AGB93999.1| sallimus, isoform P [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 147/248 (59%), Gaps = 2/248 (0%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SA LTI K D D G+YT+ L N +G+A A+ + ++ P AP TP+ + S+
Sbjct: 17669 IDEQSAKLTIKKVVDDDEGEYTVKLVNPVGEAEASLHLVIMRKPTAPGTPQPLEIMHDSI 17728
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAV 119
TL+W+ P+DDG S + Y+LE D E W +I + TTY ++KL EY+FR AV
Sbjct: 17729 TLYWKAPEDDGKSEIIEYILEYQDVKEEK-WTEIRKIKDTTYTISKLKIDTEYVFRSIAV 17787
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N +G P S + + + V+ +AP +QEPL+D V+ VTL CV G+P P + W
Sbjct: 17788 NEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDKEVTLSCVFGGIPEPKVTWK 17847
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
K+ + + R+I YEN VA++T+ + +E YTC ATNE G+AETSC L +Q K + E
Sbjct: 17848 KNGQVFESRSIRYENRVAKYTIEKTTIETEATYTCVATNEKGSAETSCRLKLQQKPVLEV 17907
Query: 240 ARHIITAR 247
+T +
Sbjct: 17908 EDKYLTQK 17915
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 803 | ||||||
| FB|FBgn0086906 | 18 | sls "sallimus" [Drosophila mel | 0.305 | 13.61 | 0.401 | 1.9e-55 | |
| UNIPROTKB|F1PV45 | 35 | F1PV45 "Uncharacterized protei | 0.232 | 5.342 | 0.328 | 4.7e-38 | |
| UNIPROTKB|F1N757 | 34 | F1N757 "Uncharacterized protei | 0.232 | 5.5 | 0.317 | 1.6e-37 | |
| UNIPROTKB|Q8WZ42 | 34 | TTN "Titin" [Homo sapiens (tax | 0.232 | 5.5 | 0.338 | 2.5e-38 | |
| MGI|MGI:98864 | 35 | Ttn "titin" [Mus musculus (tax | 0.232 | 5.342 | 0.328 | 2.2e-33 | |
| ZFIN|ZDB-GENE-030113-2 | 32 | ttna "titin a" [Danio rerio (t | 0.232 | 5.843 | 0.333 | 7.5e-27 | |
| ZFIN|ZDB-GENE-030616-413 | 28 | ttnb "titin b" [Danio rerio (t | 0.257 | 7.392 | 0.313 | 8.1e-26 | |
| FB|FBgn0005666 | 8933 | bt "bent" [Drosophila melanoga | 0.259 | 0.023 | 0.316 | 3.5e-36 | |
| WB|WBGene00006759 | 7158 | unc-22 [Caenorhabditis elegans | 0.259 | 0.029 | 0.309 | 3.8e-36 | |
| WB|WBGene00006436 | 18 | ttn-1 [Caenorhabditis elegans | 0.367 | 16.38 | 0.248 | 6.3e-34 |
| FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 100/249 (40%), Positives = 149/249 (59%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++E SA LTI K D D G+YT+ L N +G+A A+ + ++ P AP TP+ + S+
Sbjct: 17329 IDEQSAKLTIKKVVDDDEGEYTVKLVNPVGEAEASLHLVIMRKPTAPGTPQPLEIMHDSI 17388
Query: 61 TLHWRPPQDDGHSPVTGYVLESHD-KDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAA 118
TL+W+ P+DDG S + Y+LE D K+E W +I + TTY ++KL EY+FR A
Sbjct: 17389 TLYWKAPEDDGKSEIIEYILEYQDVKEE--KWTEIRKIKDTTYTISKLKIDTEYVFRSIA 17446
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
VN +G P S + + + V+ +AP +QEPL+D V+ VTL CV G+P P + W
Sbjct: 17447 VNEVGPSPPSPLSPPIRLVPKVETKAPSVQEPLQDVVSELDKEVTLSCVFGGIPEPKVTW 17506
Query: 179 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKE 238
K+ + + R+I YEN VA++T+ + +E YTC ATNE G+AETSC L +Q K + E
Sbjct: 17507 KKNGQVFESRSIRYENRVAKYTIEKTTIETEATYTCVATNEKGSAETSCRLKLQQKPVLE 17566
Query: 239 SARHIITAR 247
+T +
Sbjct: 17567 VEDKYLTQK 17575
|
|
| UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 4.7e-38, Sum P(5) = 4.7e-38
Identities = 64/195 (32%), Positives = 87/195 (44%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---NKIETTSTT 100
P P EI+ S SVTL W P+ DG + GY +E + W NK
Sbjct: 32172 PSQPGELEILSISKDSVTLQWEKPECDGGKEILGYWVEYRQSGD-SAWKKSNKDRIKDRQ 32230
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
+ + L EY FRV A N G + K EAP +++ +KD
Sbjct: 32231 FTIGGLLESTEYEFRVFAENETGLSRPRRTAMSIRTKL-TSGEAPGVRKEMKDVTTKLGE 32289
Query: 161 SVTLECVVSGVPTPDIKWYK-DDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKAT 217
+ L C + G P PDIKWY+ L++ R ++ + TV+ + EG YTC AT
Sbjct: 32290 AAQLSCQIVGRPLPDIKWYRFGKELVQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 32349
Query: 218 NEAGTAETSCTLLVQ 232
NE G ETS LL+Q
Sbjct: 32350 NEVGEVETSSKLLLQ 32364
|
|
| UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 1.6e-37, Sum P(5) = 1.6e-37
Identities = 62/195 (31%), Positives = 86/195 (44%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT---STT 100
P P EI+ S SVTL W P+ DG + GY +E + W K
Sbjct: 31374 PSQPGELEILSISKDSVTLQWEKPECDGGKEILGYWVEYRQSGD-SAWKKSSKDRIKDRQ 31432
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
+ + L EY FRV A N G V K EAP +++ +KD
Sbjct: 31433 FTIGGLLEATEYEFRVFAENETGLSRPRRTAMSVKTKL-TSGEAPGVRKEMKDVTTKLGE 31491
Query: 161 SVTLECVVSGVPTPDIKWYK-DDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKAT 217
+ L C + G P PDIKW++ L++ R ++ + TV+ + EG YTC AT
Sbjct: 31492 AAQLSCQIVGRPLPDIKWFRFGKELVQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCVAT 31551
Query: 218 NEAGTAETSCTLLVQ 232
NE G E+S LL+Q
Sbjct: 31552 NEVGEVESSSKLLLQ 31566
|
|
| UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 2.5e-38, Sum P(5) = 2.5e-38
Identities = 66/195 (33%), Positives = 87/195 (44%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---NKIETTSTT 100
P P EI+ S SVTL W P+ DG + GY +E + W NK
Sbjct: 31358 PSQPGELEILSISKDSVTLQWEKPECDGGKEILGYWVEYRQSGD-SAWKKSNKERIKDKQ 31416
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
+ + L EY FRV A N G + K EAP I++ +KD
Sbjct: 31417 FTIGGLLEATEYEFRVFAENETGLSRPRRTAMSIKTKL-TSGEAPGIRKEMKDVTTKLGE 31475
Query: 161 SVTLECVVSGVPTPDIKWYK-DDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKAT 217
+ L C + G P PDIKWY+ LI+ R ++ + TV+ + EG YTC AT
Sbjct: 31476 AAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 31535
Query: 218 NEAGTAETSCTLLVQ 232
NE G ETS LL+Q
Sbjct: 31536 NEVGEVETSSKLLLQ 31550
|
|
| MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 2.2e-33, Sum P(4) = 2.2e-33
Identities = 64/195 (32%), Positives = 86/195 (44%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---NKIETTSTT 100
P P EI+ S SVTL W P+ DG + GY +E + W NK
Sbjct: 32220 PSQPGELEILSISKDSVTLQWEKPECDGGKEILGYWVEYRQSGD-SAWKKSNKERIKDRQ 32278
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
+ + L EY FRV A N G V K EAP +++ + D
Sbjct: 32279 FTIGGLLEATEYEFRVFAENETGLSRPRRTAMSVKTKL-TSGEAPGVRKEMADVTTKLGE 32337
Query: 161 SVTLECVVSGVPTPDIKWYK-DDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKAT 217
+ L C + G P PDIKWY+ LI+ R ++ + TV+ + EG YTC AT
Sbjct: 32338 AAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTDEQEDEGVYTCVAT 32397
Query: 218 NEAGTAETSCTLLVQ 232
NE G E+S LL+Q
Sbjct: 32398 NEVGEVESSSKLLLQ 32412
|
|
| ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 7.5e-27, Sum P(6) = 7.5e-27
Identities = 65/195 (33%), Positives = 93/195 (47%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---NKIETTSTT 100
PG P +I+ + S+T+HW P+ DG + GY +E E W NK +
Sbjct: 30064 PGQPGEFDIISITKDSITIHWLRPESDGGKEILGYWIEFRQAGE-SAWKKCNKERSKDRQ 30122
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
+ + L EY FRV A N G + K V EAP ++E +KD+
Sbjct: 30123 FTIGGLMEATEYEFRVFAENETGLSRPRRTAMGIKTKLSV-GEAPCLKEDIKDTTTKLGE 30181
Query: 161 SVTLECVVSGVPTPDIKWYK-DDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKAT 217
S L C + G P P+IKWY+ LI+ R ++ + +V+ + EG YTC+A
Sbjct: 30182 SGILTCQIIGRPLPEIKWYRYGKELIQSRKYKMSSDGRNHSLSVMTDEQEDEGLYTCRAV 30241
Query: 218 NEAGTAETSCTLLVQ 232
NEAG ETS LL+Q
Sbjct: 30242 NEAGEIETSGKLLLQ 30256
|
|
| ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 8.1e-26, Sum P(5) = 8.1e-26
Identities = 67/214 (31%), Positives = 99/214 (46%)
Query: 26 SNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHD- 84
S +L SA + L PGAP P + G + +S + W+PP DG S + Y LE D
Sbjct: 26427 SESLETPSAILIKSQLERPGAPLKPVVSGITKNSFVVSWKPPLSDGGSKIKNYCLEKRDR 26486
Query: 85 -KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE 143
K E++ E T Y V LT EY FRV N G S + + K VD
Sbjct: 26487 KKGEWVAVTTDEIHQTVYSVKGLTEGVEYEFRVKCENLGGESDYSEISDPAIPKTDVDVR 26546
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GRNIT---YENNVAR 198
AP +E L++ F+S+ T C ++G P P IKW+K I+ G I ++ +
Sbjct: 26547 APAFKEDLRNLSVKFKSNATFVCKITGQPKPVIKWFKRGKEIQADGTKIKIQEFKGGYHQ 26606
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ +C Y +ATN+ G+ + +L V+
Sbjct: 26607 LVIADCEAEDSTVYQIRATNQGGSISATVSLDVE 26640
|
|
| FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 3.5e-36, Sum P(6) = 3.5e-36
Identities = 68/215 (31%), Positives = 98/215 (45%)
Query: 26 SNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK 85
S L SA T P PE+ + V L W PP DG SP+T Y++E DK
Sbjct: 3380 SEPLETESAITAKNPFDVSAPPGLPELEDWDEHHVKLKWEPPIRDGGSPITNYIIEVMDK 3439
Query: 86 DEFMVWNKIETTSTTYE--VTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE 143
D +ET S + V KL +Y FRV AVN G S T + V K P +
Sbjct: 3440 DSGEFVKAVETDSPVCKGVVKKLEEGQQYKFRVRAVNKAGPSDPSEQTNWHVAK-PRFLK 3498
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE-NNV---ARF 199
+ + LK + S++L+ + G P P ++W+ ++S + + + +NV +F
Sbjct: 3499 PHIDRVNLKPVIVKTGLSISLDINIRGEPAPKVEWFFNNSSVTSDEHSVKIDNVDYNTKF 3558
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
V+ S G+Y KATNE G E + V GK
Sbjct: 3559 FVMRAQRSQSGKYIIKATNEVGEDEAELEVTVLGK 3593
|
|
| WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 3.8e-36, Sum P(7) = 3.8e-36
Identities = 66/213 (30%), Positives = 99/213 (46%)
Query: 26 SNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK 85
S+AL T PG TP++V V+L W PP+ DG +P+T YV+E K
Sbjct: 2268 SDALSTDKDTKAKNPYDEPGKTGTPDVVDWDADRVSLEWEPPKSDGGAPITQYVIEKKGK 2327
Query: 86 D--EFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE 143
++ K+ T E+ L EY FRV AVN G G AS +R VV K P + +
Sbjct: 2328 HGRDWQECGKVSGDQTNAEILGLKEGEEYQFRVKAVNKAGPGEASDPSRKVVAK-PRNLK 2386
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN--VARFTV 201
+ +E +K + V + V G P P +W ++ + + I E+ RF +
Sbjct: 2387 PWIDREAMKTITIKVGNDVEFDVPVRGEPPPKKEWIFNEKPVDDQKIRIESEDYKTRFVL 2446
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ G YT ATN +G+ + S ++V GK
Sbjct: 2447 RGATRKHAGLYTLTATNASGSDKHSVEVIVLGK 2479
|
|
| WB|WBGene00006436 ttn-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 6.3e-34, Sum P(4) = 6.3e-34
Identities = 83/334 (24%), Positives = 148/334 (44%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSV-TLECVVSGVPTPDIKWYKDDSLIKGRNITYEN----N 195
DA AP +++ L+D VA + TL C V GVP+P ++WYKDD + ++ Y++
Sbjct: 16265 DA-APSVKKQLEDIVANVGDLIATLSCDVDGVPSPKVQWYKDDKELTVPSMKYDSFYNEG 16323
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITA-------RG 248
+A TV N ES G+YTC+ATN+ G+ T L V+ E K+ A R
Sbjct: 16324 LAELTVKNIVESDAGKYTCRATNDLGSIMTHAKLSVKADEKKKKKSKTSPAVIEKKKDRK 16383
Query: 249 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEF 308
T + +VI+ + +L + + + K L + L W+ E
Sbjct: 16384 TSKVVVIEEMIDMPPNFHHLLQDDEAKIGEPKILVVTNTTLPEPTVDWYHNG------EH 16437
Query: 309 LSKLPSVTLVPHLGDATFQVELSSPDI--QVKWLKKGK----EIKESAR-HIITSRGTQR 361
+S S L H +++ + S D + KW GK E + A+ ++ G
Sbjct: 16438 ISINDSNYLRKH-DKGRYELHILSVDSTDEGKWKAVGKNAFGECESEAKLTVVIPDGQYA 16496
Query: 362 KLVIKRVT--QDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYE 419
K+++ + E+DI L +N+++ + ++ WF ++ + + R + ++
Sbjct: 16497 PSFGKQLSDVKCSESDILKLEVNIQA-NPAPEIN------WFRNESEIEHSQHHR-LQFD 16548
Query: 420 NNVARF--TVVNCSESSEGRYTCKATNEAGTAET 451
+ + T+++ G Y C A N+ G A T
Sbjct: 16549 DGSGNYSLTIIDAYAEDSGEYKCVAKNKIGKAHT 16582
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 803 | |||
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 7e-22 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 2e-16 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-14 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 3e-14 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 4e-14 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 3e-13 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 9e-13 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 2e-12 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-11 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-11 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 3e-11 | |
| cd05731 | 71 | cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig | 8e-11 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-10 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-10 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 3e-10 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 1e-09 | |
| cd05876 | 71 | cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik | 2e-09 | |
| cd05856 | 82 | cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I | 4e-08 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 5e-08 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 6e-08 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 7e-08 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 8e-08 | |
| cd05731 | 71 | cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig | 1e-07 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 2e-07 | |
| cd05723 | 71 | cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)- | 4e-07 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 5e-07 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 5e-07 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 6e-07 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 6e-07 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 6e-07 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-06 | |
| cd05763 | 75 | cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) | 1e-06 | |
| cd05892 | 75 | cd05892, Ig_Myotilin_C, C-terminal immunoglobulin | 1e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-06 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 3e-06 | |
| cd05763 | 75 | cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) | 3e-06 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 3e-06 | |
| cd05738 | 74 | cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu | 3e-06 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 4e-06 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 4e-06 | |
| cd05737 | 92 | cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob | 5e-06 | |
| cd04976 | 71 | cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik | 6e-06 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 7e-06 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 8e-06 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 1e-05 | |
| cd04976 | 71 | cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik | 1e-05 | |
| cd05743 | 78 | cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)- | 2e-05 | |
| cd05851 | 88 | cd05851, Ig3_Contactin-1, Third Ig domain of conta | 2e-05 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 3e-05 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 4e-05 | |
| cd05737 | 92 | cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob | 4e-05 | |
| cd04968 | 88 | cd04968, Ig3_Contactin_like, Third Ig domain of co | 4e-05 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 5e-05 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 5e-05 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 5e-05 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 5e-05 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 6e-05 | |
| cd05892 | 75 | cd05892, Ig_Myotilin_C, C-terminal immunoglobulin | 7e-05 | |
| cd05746 | 69 | cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I | 7e-05 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 1e-04 | |
| cd05864 | 70 | cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l | 1e-04 | |
| cd07693 | 100 | cd07693, Ig1_Robo, First immunoglobulin (Ig)-like | 1e-04 | |
| cd04972 | 90 | cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul | 1e-04 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 1e-04 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 2e-04 | |
| cd05739 | 69 | cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul | 2e-04 | |
| cd05876 | 71 | cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik | 3e-04 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 3e-04 | |
| cd05765 | 81 | cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) | 3e-04 | |
| cd05864 | 70 | cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l | 5e-04 | |
| cd05894 | 86 | cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma | 6e-04 | |
| cd05764 | 74 | cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) | 6e-04 | |
| cd05893 | 75 | cd05893, Ig_Palladin_C, C-terminal immunoglobulin | 7e-04 | |
| cd05891 | 92 | cd05891, Ig_M-protein_C, C-terminal immunoglobulin | 7e-04 | |
| cd05894 | 86 | cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma | 8e-04 | |
| cd05893 | 75 | cd05893, Ig_Palladin_C, C-terminal immunoglobulin | 0.001 | |
| cd04971 | 81 | cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli | 0.001 | |
| cd05733 | 77 | cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig | 0.001 | |
| cd05857 | 85 | cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like | 0.001 | |
| cd05863 | 67 | cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l | 0.001 | |
| cd05852 | 73 | cd05852, Ig5_Contactin-1, Fifth Ig domain of conta | 0.001 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 0.002 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 0.002 | |
| cd05731 | 71 | cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig | 0.002 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 0.002 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 0.002 | |
| cd05892 | 75 | cd05892, Ig_Myotilin_C, C-terminal immunoglobulin | 0.002 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 0.002 | |
| cd04976 | 71 | cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik | 0.002 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 0.002 | |
| cd05848 | 94 | cd05848, Ig1_Contactin-5, First Ig domain of conta | 0.002 | |
| cd05757 | 92 | cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig) | 0.002 | |
| cd05891 | 92 | cd05891, Ig_M-protein_C, C-terminal immunoglobulin | 0.003 | |
| cd04971 | 81 | cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli | 0.003 | |
| cd05859 | 101 | cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (I | 0.003 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 0.004 | |
| cd05747 | 92 | cd05747, Ig5_Titin_like, M5, fifth immunoglobulin | 0.004 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 7e-22
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENNVARFTV 201
P + KD S C V+G P P + W+KD ++ R +TYE T+
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLV 231
N EG+YTC ATN AG AE S L V
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-16
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTY 101
P P + + +SVTL W PP+DDG P+TGYV+E ++ + T+Y
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSY 59
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+T L EY FRV AVN G P S
Sbjct: 60 TLTGLKPGTEYEFRVRAVNGGGESPPS 86
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-14
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P F ++ ++ V+E + R V P P++ WF++ +PL SS + + ++G L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
+ D G Y VATN G A A +TV
Sbjct: 61 SNVQPD-DEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 3e-14
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGH-SPVTGYVLESHDKDEFMVWNKIETT--STT 100
P P + + +SVTL W PP DDG + GY +E ++ W ++ T ST+
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGS--EWKEVNVTPSSTS 58
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTG 125
Y +T L EY FRV AVN G G
Sbjct: 59 YTLTGLKPGTEYEFRVRAVNGAGEG 83
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-14
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
SVTL C G P P+I W KD + N + + T+ + S G YTC A N
Sbjct: 3 QSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAENS 61
Query: 220 AG 221
AG
Sbjct: 62 AG 63
|
Length = 63 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-13
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P P +SW K+G + S ++ + T T+ I +V D YT ATN+AG
Sbjct: 21 TCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAG 80
Query: 589 STSLDLSLQV 598
L V
Sbjct: 81 EAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 9e-13
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
++EV G P P ++W K+G + S +I ++++ I + R+D+ YT+T N
Sbjct: 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNP 62
Query: 587 AGSTSLDLSLQV 598
AG S ++++V
Sbjct: 63 AGEKSATINVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYE 102
AP + + +S+TL W PP G+ P+TGY +E + W +I T+T+Y
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPP--PGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYT 58
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPAS 128
+T L EY RV AVN G GP S
Sbjct: 59 LTGLKPGTEYEVRVQAVNGAGEGPPS 84
|
Length = 84 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-11
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDS---LIKGR-NITYENNVARFTVVNCSESSEGRYTCK 215
SVTL C SG P P++ WYK GR +++ + + T+ N + G YTC
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69
Query: 216 ATNEAGTAETSCTLLV 231
ATN +G+A + TL V
Sbjct: 70 ATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-11
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDS---LIKGR-NITYENNVARFTVVNCSESSEGRYTCK 215
SVTL C SG P P++ WYK GR +++ + + T+ N + G YTC
Sbjct: 10 ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69
Query: 216 ATNEAGTAETSCTLLV 231
ATN +G+A + TL V
Sbjct: 70 ATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 59.4 bits (143), Expect = 3e-11
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNIT-------YENNVARFTVVNCSESSEGRYTC 214
VTL C+ SG P P I W K+ + +T + + T+ N + G YTC
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 215 KATNEAGTAETSCT 228
A+N AGT S T
Sbjct: 61 VASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-11
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 162 VTLECVVSGVPTPDIKWYK-DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220
+ LEC+ G+PTP+I W K L R +EN + N SE +G Y C A+N
Sbjct: 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59
Query: 221 GTAETSCTLLVQ 232
G+A + ++ V+
Sbjct: 60 GSARHTISVTVE 71
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-10
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNN-KPLLSSPKKREIFDGENIILELKEADSETDA 741
TVKE ++ L + SP P + W++ K L S + G L + E D+
Sbjct: 5 TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE-DS 63
Query: 742 GDYKVVATNELGSATHGARVTV 763
G Y ATN GSA+ G +TV
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-10
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNN-KPLLSSPKKREIFDGENIILELKEADSETDA 741
TVKE ++ L + SP P + W++ K L S + G L + E D+
Sbjct: 5 TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE-DS 63
Query: 742 GDYKVVATNELGSATHGARVTV 763
G Y ATN GSA+ G +TV
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNIT--YENNVARFTVV--NCSESSEGRYTCK 215
S+V L+C SG P P I W KD K + Y+ ++T++ + S G+YTC
Sbjct: 10 STVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCI 69
Query: 216 ATNEAGT 222
N+ G+
Sbjct: 70 VENKYGS 76
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-KGRNITYENNVARFTVV 202
PV+ G VTL C G P P+ WYKD + +N + NV
Sbjct: 1 KPVLTPSPTVVFEG--EDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNV------ 52
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
S G YTC A+N G +TS + +
Sbjct: 53 --SAEDSGTYTCVASNG-GGGKTSNPVTLT 79
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-09
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221
+ LEC+ G+PTP++ W + D + NN + N ES +G Y C A N G
Sbjct: 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60
Query: 222 TAETSCTLLVQ 232
+A T+ V+
Sbjct: 61 SARHHYTVTVE 71
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71 |
| >gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-08
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV--NCSESSEGRYTCKAT 217
SSV L+CV SG P PDI W KD+ + I E+ ++T+ N G+YTC +
Sbjct: 10 SSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVS 68
Query: 218 NEAG 221
N AG
Sbjct: 69 NRAG 72
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKAT 217
SV LE +SG PTP + W KD +K I + + N S G+YT
Sbjct: 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60
Query: 218 NEAGTAETSCTLLV 231
N AG + + V
Sbjct: 61 NPAGEKSATINVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 581 VTATNAAGSTSLDLSLQ-------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633
+T T+ STSL LS + GY ++ + N + K T+ +T YT+ L+
Sbjct: 6 LTVTDV-TSTSLTLSWSPPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGLKP 64
Query: 634 KSEYYFQVFAENSVGLGPE 652
+EY +V A N G GP
Sbjct: 65 GTEYEVRVQAVNGAGEGPP 83
|
Length = 84 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 7e-08
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+ GY+++ +EK S + +V S YT+ L+ +EY F+V A N G P + +
Sbjct: 30 PITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESV 89
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 8e-08
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
GFP P ++W K+G I + F +E+ S + I V + D + YT A N AG +
Sbjct: 29 GFPEPTMTWTKDGEPIESGEEKYSF-NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE 87
Query: 594 LSLQV 598
+ L+V
Sbjct: 88 IHLKV 92
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 700 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759
P P I W + L P R F+ N L++ SE D G+Y+ A+N LGSA H
Sbjct: 11 PTPEISWIKIGGEL---PADRTKFENFNKTLKIDNV-SEEDDGEYRCTASNSLGSARHTI 66
Query: 760 RVTV 763
VTV
Sbjct: 67 SVTV 70
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVV--NCSESSEGRYTCKA 216
V LEC VS +P P I W K++ ++ R Y++N R ++ N ++ G YT A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 217 TNEAGTAETSCT 228
NEAG SC
Sbjct: 61 VNEAGVV--SCN 70
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-07
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 162 VTLECVVSGVPTPDIKWYKD-DSLIKGR--NITYENNVARFTVVNCSESSEGRYTCKATN 218
+ EC V+G PTP +KW K+ D +I I E+N+ V+ +S EG Y C A N
Sbjct: 2 IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNL---QVLGLVKSDEGFYQCIAEN 58
Query: 219 EAGTAETSCTLLV 231
+ G + L++
Sbjct: 59 DVGNVQAGAQLII 71
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-07
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
+KD ++ R +TYE T+ N EG+YTC ATN AG AE
Sbjct: 35 FKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEAS 85
|
Length = 90 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-07
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKV 746
++RL + P P++ W ++ KPL S R + + L +K A+ D+G Y +
Sbjct: 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSG--RVQIETTASSTSLVIKNAERS-DSGKYTL 57
Query: 747 VATNELGSATHGARVTV 763
N G + V V
Sbjct: 58 TLKNPAGEKSATINVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 6e-07
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCSESSEG 210
++ A SVTL C G P P + W KD I+ ++ + + T+++ + E
Sbjct: 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEA 71
Query: 211 RYTCKATNEAGTAETSCTLLVQGK 234
YTC A N+AG E L V K
Sbjct: 72 EYTCIAENKAGEQEAEIHLKVFAK 95
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-07
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 162 VTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220
V +C V G P P + W K+D L KGR ++ + N + EG YTC+A N
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIR--NVTAGDEGSYTCEAENMV 58
Query: 221 GTAETSCTLLV 231
G E S +L V
Sbjct: 59 GKIEASASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-07
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-ITYENNVARFTVVNCSESSE 209
+ D+ A SS+ EC SG P P +W K+ + N I E R T ++ S+S
Sbjct: 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDS-- 63
Query: 210 GRYTCKATNEAGTAETSCTLLV 231
G Y C A N+ GT S L V
Sbjct: 64 GMYQCVAENKHGTIYASAELAV 85
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 307 EFLSKLPSVTLVPHLGD-ATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
+F K V + G+ A F ++ PD V W K G+ ++ S R +T G L
Sbjct: 2 KFTQKPKDVEVQE--GESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLT 59
Query: 365 IKRVTQDDE 373
I V DDE
Sbjct: 60 ISNVQPDDE 68
|
Length = 90 |
| >gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 164 LECVVSGVPTPDIKWYKDDSL----IKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
LEC +G PTP I W KD + R + F +V+ G Y+C A N
Sbjct: 3 LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT 62
Query: 220 AGTAETSCTLLV 231
AG+ + TL V
Sbjct: 63 AGSISANATLTV 74
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75 |
| >gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVV--NCSESSEGRYTCKA 216
V LEC +S +P P I W +++ +++ R Y++N R T++ N ++ G YT A
Sbjct: 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60
Query: 217 TNEAGTAETSCTLLV 231
NEAG A L V
Sbjct: 61 VNEAGVATCHARLDV 75
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 2e-06
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 531 KYFGFPRPEISWMKNGAEITDSKACRIFIDEET----STIAIYSVVRADTSTYTVTATNA 586
G P P I+W+KNG + S R+ T ST+ I +V D+ TYT A+N+
Sbjct: 6 LASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65
Query: 587 AGSTS 591
AG+ S
Sbjct: 66 AGTVS 70
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-06
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVA 748
+RL +V A P P I W +NN+ L + + ++ D I L + ++ DAG Y V A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 749 TNELGSATHGARVTV 763
NE G + AR+ V
Sbjct: 61 VNEAGVVSCNARLDV 75
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 534 GFPRPEISWMKNGAEITDSKACR---IFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590
G P P+I+W K+G TD A R + + E I V DT Y+ TA N AGS
Sbjct: 9 GHPTPQIAWQKDGG--TDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI 66
Query: 591 SLDLSLQVL 599
S + +L VL
Sbjct: 67 SANATLTVL 75
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-06
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVV 202
PVI SV VTL C G P P I WY++ S+ G + + T+
Sbjct: 1 KPVITVSPSPSVTS-GGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSG-STLTLS 58
Query: 203 NCSESSEGRYTCKATN 218
+ + G YTC A+N
Sbjct: 59 SVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-06
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 163 TLECVVSGVPTPDIKWYKD----DSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
T+ C SG P P+I W+KD D+ GR I + A + N ES +G+Y C ATN
Sbjct: 2 TMLCAASGNPDPEITWFKDFLPVDTTSNGR-IKQLRSGALQ-IENSEESDQGKYECVATN 59
Query: 219 EAGT 222
AGT
Sbjct: 60 SAGT 63
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATN 218
V +EC P P I W K L+ R + + ++N ++S EG+YTC A N
Sbjct: 3 DVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLE--ILNVTKSDEGKYTCFAEN 60
Query: 219 EAGTAETSCTLLV 231
G A ++ +L V
Sbjct: 61 FFGKANSTGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-06
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 148 QEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLI----KGRNITYENNVARFTVV 202
EP D+ LEC G P P + W KD + + I + N+ +
Sbjct: 1 VEP-SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL---IA 56
Query: 203 NCSESSEGRYTCKATNEAGTAETS 226
+S EG Y C ATN G E++
Sbjct: 57 EARKSDEGTYKCVATNMVGERESA 80
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-06
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
FG P PE+SW+KN + S + +++ + +++ I V D+ Y + N G +
Sbjct: 26 FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85
Query: 592 LDLSLQV 598
+D+++ V
Sbjct: 86 VDVTVSV 92
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92 |
| >gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-06
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749
+RL KVKA P P I W++N K + S K R G + L +K+ +E DAG+Y VV T
Sbjct: 1 VRLPVKVKAYPPPEIQWYKNGKLI--SEKNRTKKSGHS--LTIKDV-TEEDAGNYTVVLT 55
Query: 750 N 750
N
Sbjct: 56 N 56
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-06
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587
+E K P+P ISW K +T+S RI I + S I +V ++D YT A N
Sbjct: 6 IECKPKAAPKPTISWSKGTELLTNSS--RICIWPDGSLE-ILNVTKSDEGKYTCFAENFF 62
Query: 588 GSTSLDLSLQV 598
G + SL V
Sbjct: 63 GKANSTGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 8e-06
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 163 TLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
+L C G+P P + W K+ I + +T N + + N G YTC A NE
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61
Query: 220 AGTAETSCTLLVQ 232
AG E +L V+
Sbjct: 62 AGVDEDISSLFVE 74
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 697 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG--- 753
+ P P++ W ++ +PL ++ I D N++ + EA +D G YK VATN +G
Sbjct: 22 RGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL--IAEARK-SDEGTYKCVATNMVGERE 78
Query: 754 SATHGARVTV 763
SA AR++V
Sbjct: 79 SAA--ARLSV 86
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
++ VK +P PEI W KNG I S+ R ++ I V D YTV TN
Sbjct: 2 RLPVKVKAYPPPEIQWYKNGKLI--SEKNRTKKSG--HSLTIKDVTEEDAGNYTVVLTNK 57
Query: 587 AGSTSLDLSLQVL 599
L+ ++
Sbjct: 58 QAKLEKRLTFTLV 70
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71 |
| >gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKA 216
+V CV +GVPTP I W + + +IT E T+ + ES +G YTC+A
Sbjct: 2 ETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEA 61
Query: 217 TNEAGT 222
N G
Sbjct: 62 INTRGM 67
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78 |
| >gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-DDSLIKGRNITYENNVARFTVVN 203
I KD+ A +VTLEC G P P I+W K + + I+ V + + N
Sbjct: 2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLK--IFN 59
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLLVQ 232
EG Y C+A N G + + VQ
Sbjct: 60 IQPEDEGTYECEAENIKGKDKHQARVYVQ 88
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745
E ++ L + +P P+I W ++ KPL + F L +K S D+G Y
Sbjct: 1 EGQSVTLTCPAEGNPVPNITWLKDGKPL----PESNRFVASGSTLTIKSV-SLEDSGLYT 55
Query: 746 VVATNELG 753
VA N G
Sbjct: 56 CVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 4e-05
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 695 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI----ILELKEADSETDAGDYKVVATN 750
P P+I W +N KPL SS R L + E D+G Y VA+N
Sbjct: 6 LASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE-DSGTYTCVASN 64
Query: 751 ELGSATHGAR 760
G+ +
Sbjct: 65 SAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDA 741
T+ E T+ L V P P + W +N++ L S + G+ L +K SE D+
Sbjct: 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSE-DS 70
Query: 742 GDYKVVATNELGSATHGARVTVDV 765
G Y +V N+ G T VTV V
Sbjct: 71 GKYGIVVKNKYGGET--VDVTVSV 92
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92 |
| >gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNC 204
+I KD+ A +VTLEC G P P IKW K D + + A + N
Sbjct: 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSG-AVLKIPNI 60
Query: 205 SESSEGRYTCKATNEAG 221
EG Y C+A N G
Sbjct: 61 QFEDEGTYECEAENIKG 77
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P P I+W+K+G + +S R ST+ I SV D+ YT A N+AG
Sbjct: 13 GNPVPNITWLKDGKPLPESN--RFVASG--STLTIKSVSLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 531 KYFGFPRPEISWMKNGAE-ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
+ G P PE++W K G + + +S + TST+ I +V D+ TYT ATN++GS
Sbjct: 17 EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGS 76
Query: 590 TSLDLSLQV 598
S +L V
Sbjct: 77 ASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 531 KYFGFPRPEISWMKNGAE-ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
+ G P PE++W K G + + +S + TST+ I +V D+ TYT ATN++GS
Sbjct: 17 EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGS 76
Query: 590 TSLDLSLQV 598
S +L V
Sbjct: 77 ASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 5e-05
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDS----LIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
SSVTL C VSG P D+ W+K+ + T+ N + G YTC
Sbjct: 2 SSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCV 61
Query: 216 A 216
Sbjct: 62 V 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-05
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ++W+KNG +IT + ++ + S + I +V DT YT A N AG D
Sbjct: 9 GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE-D 67
Query: 594 LS 595
+S
Sbjct: 68 IS 69
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 7e-05
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVV 747
++L ++ A P P I W RNN+ + + + ++ + + L +K + + DAG Y V
Sbjct: 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVN-KKDAGWYTVS 59
Query: 748 ATNELGSATHGARVTV 763
A NE G AT AR+ V
Sbjct: 60 AVNEAGVATCHARLDV 75
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75 |
| >gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P I+W K+G ++T+S I +AI V AD Y A N G S+
Sbjct: 9 GDPEPTITWNKDGVQVTESGKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVS 65
Query: 594 LSL 596
+ L
Sbjct: 66 MVL 68
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
G PRP I+W+K+G + + ++ T+ + SVV +D+ YT N GS
Sbjct: 20 GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585
K+ VKY+G+P PE+ W KNG I + + + + IY V D YTV TN
Sbjct: 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGV-----HLTIYEVTEKDAGNYTVVLTN 55
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70 |
| >gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 20/98 (20%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVAR----- 198
P I E D + TL C G PTP I+W K+ G+ + + + R
Sbjct: 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKN-----GQPLETDKDDPRSHRIV 55
Query: 199 --------FTVVN--CSESSEGRYTCKATNEAGTAETS 226
VV+ S EG Y C A N G A +
Sbjct: 56 LPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSR 93
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100 |
| >gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNVARFT--V 201
+ + +V + T+ C G P P ++W +I+ R T E V + +
Sbjct: 1 TIPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQL 60
Query: 202 VNCSESSEGRYTCKATNEAGTAETS 226
N + ++ TC A N G A S
Sbjct: 61 SNITSETQTTVTCTAENPVGQANVS 85
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV--NCSESSEGRYTCKAT 217
+ L+C G+P P I W + I+ V T++ N + Y C A+
Sbjct: 2 ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNAS 61
Query: 218 NEAGTA 223
N G
Sbjct: 62 NVHGYL 67
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
++GY ++ +E+ S K + PS+ YT+ L+ +EY F+V A N G G
Sbjct: 33 IVGYRVEYREEGSE--WKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
Query: 160 SSVTLECVVSGVPTPDIKWY-------KDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
SV L CV G P P +KW K+D + GRN+ N+ Y
Sbjct: 2 GSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIYE----------SANY 51
Query: 213 TCKATNEAGTAETS 226
TC A + G E +
Sbjct: 52 TCVAISSLGMIEAT 65
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69 |
| >gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 700 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759
P P + W R + PL + K+ N L+L E+D G+Y A N GSA H
Sbjct: 11 PTPEVHWDRIDGPLSPNRTKKLNN---NKTLQLDNV-LESDDGEYVCTAENSEGSARHHY 66
Query: 760 RVTVD 764
VTV+
Sbjct: 67 TVTVE 71
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 695 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
K KA+P P+I W + + L +S + DG IL + ++ D G Y A N G
Sbjct: 9 KPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKS----DEGKYTCFAENFFGK 64
Query: 755 ATHGARVTV 763
A ++V
Sbjct: 65 ANSTGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 161 SVTLECVVSGVPTPDIKWYKD----DSLIKGRNITYEN----NVARFTVVNCSESSEGRY 212
+ + C V+G P P+I W K ++LI N N N+ + + N G Y
Sbjct: 3 TASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLY 62
Query: 213 TCKATNEAGTAETSCTLLV 231
TC A N G + L V
Sbjct: 63 TCTARNSGGLLRANFPLSV 81
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81 |
| >gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 5e-04
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749
+++ K P P + W++N + ++ + G + L + E +E DAG+Y VV T
Sbjct: 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT---FKRG--VHLTIYEV-TEKDAGNYTVVLT 54
Query: 750 N 750
N
Sbjct: 55 N 55
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70 |
| >gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 6e-04
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE--ETSTIAIYSVVRADTSTYTVTAT 584
+++V G P P ++W + T+++ R+ ++ + S+ I R D YT+T T
Sbjct: 14 RLDVPISGEPAPTVTWSRGDKAFTETEG-RVRVESYKDLSSFVIEGAEREDEGVYTITVT 72
Query: 585 NAAGSTSLDLSLQV 598
N G L ++V
Sbjct: 73 NPVGEDHASLFVKV 86
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86 |
| >gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 162 VTLECVVSGVPTPDIKW-YKDDSLI--KGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
TL C G P P I W D LI R + Y+N + ++ G +TC A+N
Sbjct: 4 ATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDT--GSFTCIASN 61
Query: 219 EAGTAETSCTLLV 231
AG A + L +
Sbjct: 62 AAGEATATVELHI 74
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 7e-04
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVA 748
+RL +V P P I W + N+ L + + + D I L + ++ DAG Y V A
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60
Query: 749 TNELGSATHGARVTV 763
NE G + AR+ V
Sbjct: 61 KNEAGIVSCTARLDV 75
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75 |
| >gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
FG P PE+ W KN +I S+ + +++ + +++ I V D+ Y++ N G +
Sbjct: 26 FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85
Query: 592 LDLSLQV 598
+D+++ V
Sbjct: 86 VDVTVSV 92
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92 |
| >gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 8e-04
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVAR--FTVVNCSESSE 209
VAG + + L+ +SG P P + W + D +GR + E+ F + E
Sbjct: 8 VAG--NKLRLDVPISGEPAPTVTWSRGDKAFTETEGR-VRVESYKDLSSFVIEGAEREDE 64
Query: 210 GRYTCKATNEAGTAETSCTLLV 231
G YT TN G S + V
Sbjct: 65 GVYTITVTNPVGEDHASLFVKV 86
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86 |
| >gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.001
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVARFTVV--NCSESSEGRYTCKA 216
V LEC VSGVP P I W K++ + R +++N ++ ++ G YT A
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60
Query: 217 TNEAGTAETSCT 228
NEAG SCT
Sbjct: 61 KNEAGI--VSCT 70
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75 |
| >gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 696 VKASPAPSIVWFRNNKPLLSS---PKKREIFDGENIILE--LK-EADSETDAGDYKVVAT 749
V+ +P P++ W+ N L S + L+ + + + G+Y +VA+
Sbjct: 7 VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66
Query: 750 NELGSAT 756
NE G +
Sbjct: 67 NEYGQDS 73
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81 |
| >gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 162 VTLECVVSGVPTPDIKWYKDD---SLIKGRNITYENNVARFTVVNCS----ESSEGRYTC 214
+ ++C G P P W ++ K +T + + + N + E EG Y C
Sbjct: 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQC 60
Query: 215 KATNEAGTA 223
A+NE GTA
Sbjct: 61 YASNELGTA 69
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77 |
| >gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.001
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCS--ESSEGRYTCKA 216
+V C +G PTP ++W K+ K R Y+ ++++ S S +G YTC
Sbjct: 11 TVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 70
Query: 217 TNEAGTAETSCTLLV 231
NE G+ + L V
Sbjct: 71 ENEYGSINHTYHLDV 85
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85 |
| >gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.001
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
K+ VK +P PE W K+G I+ ++ I V A TYT+ N+
Sbjct: 2 KLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNS 53
Query: 587 AGSTSLDLSLQVL 599
A +SL+++
Sbjct: 54 AAGLEKRISLELI 66
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67 |
| >gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.001
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 162 VTLECVVSGVPTPDIKWYK-DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220
V +EC P P W K + L+ I+ ++ ++N ++ EG YTC A N
Sbjct: 4 VIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD-GSLEILNITKLDEGSYTCFAENNR 62
Query: 221 GTAETSCTLLV 231
G A ++ L V
Sbjct: 63 GKANSTGVLSV 73
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 313 PSVTLVPHLGDATFQVELSS-PDIQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQ 370
PSVT+ T E S P +V W K GK + ES R ++ G+ L I VT
Sbjct: 2 PSVTVKEG-ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 371 DDE 373
+D
Sbjct: 61 EDS 63
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 313 PSVTLVPHLGDATFQVELSS-PDIQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQ 370
PSVT+ T E S P +V W K GK + ES R ++ G+ L I VT
Sbjct: 2 PSVTVKEG-ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 371 DDE 373
+D
Sbjct: 61 EDS 63
|
Length = 85 |
| >gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P PEISW+K G E+ A R + T+ I +V D Y TA+N+ GS
Sbjct: 9 GLPTPEISWIKIGGELP---ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHT 65
Query: 594 LSLQV 598
+S+ V
Sbjct: 66 ISVTV 70
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.002
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS---TIAIYSVVRADTSTYTVTA 583
++E + P P+I W KN +T + RI + ++ + I + + D YTV+A
Sbjct: 2 RLECRVSAIPPPQIFWKKNNEMLTYNTD-RISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 584 TNAAGSTSLDLSLQV 598
N AG S + L V
Sbjct: 61 VNEAGVVSCNARLDV 75
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P + W K E+ +A I D+ ++ I +V D +YT A N G
Sbjct: 9 GDPVPTVLWRKEDGELPKGRA-EILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEAS 64
Query: 594 LSLQV 598
SL V
Sbjct: 65 ASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.002
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS---TIAIYSVVRADTSTYTVTA 583
K+E + P P+I W +N E+ RI + ++ S T+ I +V + D YTV+A
Sbjct: 2 KLECQISAIPPPKIFWKRNN-EMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60
Query: 584 TNAAGSTSLDLSLQV 598
N AG + L V
Sbjct: 61 VNEAGVATCHARLDV 75
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P P +SW K+G + + R+ I ++ + + I ++D TY ATN G
Sbjct: 23 GHPEPTVSWRKDGQPL-NLDNERVRIVDDGN-LLIAEARKSDEGTYKCVATNMVG 75
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 168 VSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSC 227
V P P+I+WYK+ LI +N T ++ + T+ + +E G YT TN+ E
Sbjct: 7 VKAYPPPEIQWYKNGKLISEKNRTKKSGHS-LTIKDVTEEDAGNYTVVLTNKQAKLEKRL 65
Query: 228 TL 229
T
Sbjct: 66 TF 67
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPL-LSSPKKREIFDGENIILELKEADSETDAGDYKVV 747
T RL + + P P+I W N P+ P R DG +IL D Y+
Sbjct: 3 TGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNV---QPNDTAVYQCN 59
Query: 748 ATNELGSATHGARVTV 763
A+N G A V V
Sbjct: 60 ASNVHGYLLANAFVHV 75
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.002
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 145 PV-IQEPLKDSVAGFQS---SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNV---- 196
PV +QEP D++ S V L C G P P +W L G I E++
Sbjct: 2 PVFVQEP-DDAIFPTDSDEKKVILNCEARGNPVPTYRW-----LRNGTEIDTESDYRYSL 55
Query: 197 --ARFTVVNCSESSE-GRYTCKATNEAGT 222
+ N SE + GRY C ATN G+
Sbjct: 56 IDGNLIISNPSEVKDSGRYQCLATNSIGS 84
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94 |
| >gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 173 TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
P ++WYKD L++G + ++ + N +E G YTCK T
Sbjct: 29 LPPVQWYKDCKLLEGDRKRFVKG-SKLLIQNVTEEDAGNYTCKLT 72
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92 |
| >gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.003
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-LSSPKKREIFDGENIILELKEADSETDA 741
T+ E T+ L V +P P ++WF+N++ + LS ++ G+ L +K SE D+
Sbjct: 12 TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSE-DS 70
Query: 742 GDYKVVATNELGSATHGARVTV 763
G Y + N+ G T V+V
Sbjct: 71 GKYSINVKNKYGGETVDVTVSV 92
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92 |
| >gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYS-VVRADTST------YTVTATNA 586
G P+P ++W NGA + +S R I E +T Y ++ D T YT+ A+N
Sbjct: 9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNE 68
Query: 587 AGSTS 591
G S
Sbjct: 69 YGQDS 73
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81 |
| >gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.003
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 156 AGFQSSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVA--RF----TVVNCSE 206
A V P P I+W KD+ + T E+NV R+ ++ E
Sbjct: 15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE 74
Query: 207 SSEGRYTCKATNEAGTAETSCTLLVQ 232
G YT A NE + L +Q
Sbjct: 75 EDSGLYTALAQNEDAVKSYTFALQIQ 100
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. Length = 101 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.004
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447
KD + N + + T+ + S G YTC A N AG
Sbjct: 22 LKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.004
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ++WM+ G I S+ +I E ST I V +D YTV N+ G
Sbjct: 29 GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQ 88
Query: 594 LSL 596
+L
Sbjct: 89 FTL 91
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 803 | |||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4194|consensus | 873 | 99.96 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.94 | |
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.94 | |
| KOG4194|consensus | 873 | 99.93 | ||
| KOG3515|consensus | 741 | 99.87 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.81 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.73 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.73 | |
| KOG3515|consensus | 741 | 99.72 | ||
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.62 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.62 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.61 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.61 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.6 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.6 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.59 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.56 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.56 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.56 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.56 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.54 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.54 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.54 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.53 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.53 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.53 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.52 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.52 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.52 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.52 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.52 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.51 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.51 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.51 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.51 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.51 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.5 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.5 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.5 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.49 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.48 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.48 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.48 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.48 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.48 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.47 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.47 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.47 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.47 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.47 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.46 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.46 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.46 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.46 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.45 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.45 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.45 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.45 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.44 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.44 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.43 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.43 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.43 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.43 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.43 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.42 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.42 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.41 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.41 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.41 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.41 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.41 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.41 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.41 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.41 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.4 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.4 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.4 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.4 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.4 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.39 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.39 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.39 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.39 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.38 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.38 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.38 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.38 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.38 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.37 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.37 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.37 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.37 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.36 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.36 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.36 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.36 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.36 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.36 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.35 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.35 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.35 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.35 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.34 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.34 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.33 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.33 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.33 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.33 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.33 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.33 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.33 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.33 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.32 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.32 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.32 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.32 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.3 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.3 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.29 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.29 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.29 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.29 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.28 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.28 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.28 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.28 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.28 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.28 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.27 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.27 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.27 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.27 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.26 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.26 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.25 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.25 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.25 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.24 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.23 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.23 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.23 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.23 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.22 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.22 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.21 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.21 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.21 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.2 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.19 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.19 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.19 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.19 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.18 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.18 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.17 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.17 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.16 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.15 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.13 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.12 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.12 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.12 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.11 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.1 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.09 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.09 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.08 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.08 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.07 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.07 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.06 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.06 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.04 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.04 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.03 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.02 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.02 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.0 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.98 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 98.97 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.96 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.95 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 98.94 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.93 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.92 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.92 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.92 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.92 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.88 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.88 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.87 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.86 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.85 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.84 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.82 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.82 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.82 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.81 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.81 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 98.79 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.77 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.77 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.76 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.76 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.74 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.74 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.72 | |
| PHA03376 | 221 | BARF1; Provisional | 98.72 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.68 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 98.68 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.67 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.67 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.66 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.65 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.64 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.63 | |
| KOG0613|consensus | 1205 | 98.6 | ||
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.59 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.56 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.54 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.54 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.53 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.47 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.47 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.44 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.43 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.43 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.41 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.4 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.38 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.37 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.37 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.36 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.35 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.34 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.29 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.29 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.26 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.25 | |
| KOG0613|consensus | 1205 | 98.23 | ||
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.22 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.22 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.22 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.18 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.18 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.18 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.17 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.15 | |
| PHA03376 | 221 | BARF1; Provisional | 98.15 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.14 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.14 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.12 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.12 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.12 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.11 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.11 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.11 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.11 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.09 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.07 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.05 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.05 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.04 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.04 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.01 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.0 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 97.99 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.98 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 97.97 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 97.96 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 97.96 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.95 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.94 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 97.93 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.93 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 97.9 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.89 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.88 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.87 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.86 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 97.85 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.84 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 97.84 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 97.84 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.82 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 97.81 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.81 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 97.81 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 97.8 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 97.79 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.78 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 97.78 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.78 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 97.78 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.75 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.75 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.75 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.71 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.7 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.69 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.68 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.64 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.61 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.6 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.59 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.55 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.52 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.51 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.48 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.47 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.47 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.37 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.35 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.35 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.3 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.29 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.16 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.15 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.15 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.14 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.13 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.13 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 97.13 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.07 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.04 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.01 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 96.97 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 96.93 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 96.92 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 96.87 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 96.86 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 96.84 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 96.8 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 96.78 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 96.74 | |
| KOG4597|consensus | 560 | 96.72 | ||
| KOG1480|consensus | 909 | 96.72 | ||
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.71 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.7 | |
| KOG1480|consensus | 909 | 96.69 | ||
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 96.64 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 96.59 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 96.58 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 96.54 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 96.53 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 96.52 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 96.41 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 96.41 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.4 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.39 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 96.39 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 96.37 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 96.37 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.35 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 96.34 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 96.28 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.25 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 96.24 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.22 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 96.17 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.17 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 96.05 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 96.05 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 96.01 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.0 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 95.97 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 95.91 | |
| KOG0196|consensus | 996 | 95.9 | ||
| PHA02982 | 251 | hypothetical protein; Provisional | 95.81 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 95.78 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 95.77 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 95.55 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 95.48 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 95.43 | |
| KOG0196|consensus | 996 | 95.4 | ||
| KOG4597|consensus | 560 | 95.28 | ||
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 95.21 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 95.12 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 94.94 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 94.92 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 94.91 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 94.76 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 94.55 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 94.54 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 94.24 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 94.14 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 91.72 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 91.48 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 91.48 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 91.33 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 90.81 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 90.69 | |
| cd00063 | 93 | FN3 Fibronectin type 3 domain; One of three types | 90.29 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 90.05 | |
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 89.94 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 87.74 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 87.62 | |
| KOG4367|consensus | 699 | 86.7 | ||
| PF06832 | 89 | BiPBP_C: Penicillin-Binding Protein C-terminus Fam | 86.69 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 86.26 | |
| PHA03281 | 642 | envelope glycoprotein E; Provisional | 85.51 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 85.47 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 84.51 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 84.1 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 83.97 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 83.82 | |
| KOG1026|consensus | 774 | 83.57 | ||
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 82.69 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 80.72 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-56 Score=492.71 Aligned_cols=523 Identities=24% Similarity=0.312 Sum_probs=400.8
Q ss_pred ceEEEEEeec-cCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCCC-C-CceEEEecCCeEEEEeeCCCCCCCCCeEEEEE
Q psy2776 5 SATLTIVKFE-DKDLGDYTISLSNALGQA-SATTKVTLLSAPGAP-D-TPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL 80 (803)
Q Consensus 5 ~~~L~I~~~~-~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~p-~-~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~ 80 (803)
.++|.|.+.. ..|.|.|+|.|.|..|.. +..+.|..-..+..+ . ...+...+|..+.|.|.+|++.+. ..-||+
T Consensus 95 ~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~--l~~~W~ 172 (1051)
T KOG3513|consen 95 GGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPP--LRYYWM 172 (1051)
T ss_pred cCceEecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCC--ccEEeh
Confidence 5789999887 889999999999999986 445666655444433 2 234556789999999999988665 333333
Q ss_pred -EeecCCCceeEEEe-eeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEE-cC-CCCCCCCeeecc-CcCee
Q psy2776 81 -ESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV-KA-PVDAEAPVIQEP-LKDSV 155 (803)
Q Consensus 81 -~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~-~~-~~~~~~p~i~~~-~~~~~ 155 (803)
.....-....-.+. ....+.|.|.++..+|.+.|.|.+.+..-....-.....+.+ .. .....+|.|... +.+..
T Consensus 173 ~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~ 252 (1051)
T KOG3513|consen 173 LNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETET 252 (1051)
T ss_pred hccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCccc
Confidence 22222111121122 234799999999999999999999884322111111112221 11 112345655554 45677
Q ss_pred eecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeee
Q psy2776 156 AGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235 (803)
Q Consensus 156 v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~ 235 (803)
...|+.+.|+|.+.|+|.|+|.|+|.+.....++..+.+...+|.|.+++.+|+|.|+|.|+|..|.......|.|...|
T Consensus 253 a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P 332 (1051)
T KOG3513|consen 253 ALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPP 332 (1051)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCc
Confidence 88999999999999999999999999987667777888888999999999999999999999999988888889888773
Q ss_pred cccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCce
Q psy2776 236 IKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315 (803)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (803)
.++. .+..
T Consensus 333 -----------------------------------------------------------------------~w~~-~~~d 340 (1051)
T KOG3513|consen 333 -----------------------------------------------------------------------YWLQ-KPQD 340 (1051)
T ss_pred -----------------------------------------------------------------------hhhc-ccce
Confidence 2222 2345
Q ss_pred eeeccccceeEEEEe-cCCceeeEEeecCeeccccce---eEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 316 TLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESAR---HIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
..+..|+.++|.|.+ |.|.|+|.|+|||+++....+ ..+. +
T Consensus 341 ~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~-~---------------------------------- 385 (1051)
T KOG3513|consen 341 TEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID-D---------------------------------- 385 (1051)
T ss_pred eEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe-C----------------------------------
Confidence 556679999999999 999999999999999986544 2222 1
Q ss_pred eecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCc
Q psy2776 392 LDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADT 471 (803)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 471 (803)
..|.|.+++..|+|.|+|.|+|..|..-.+
T Consensus 386 -------------------------------g~L~is~v~~~dsg~YQC~A~Nk~G~i~an------------------- 415 (1051)
T KOG3513|consen 386 -------------------------------GTLIISNVQESDSGVYQCIAENKYGTIYAN------------------- 415 (1051)
T ss_pred -------------------------------CEEEEEecccccCeEEEeeeecccceEeee-------------------
Confidence 138899999999999999999999998884
Q ss_pred ccCCchhhhhcccccccccccceeeeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 472 RVKPPMKRVLQKLAVPFSYKTRTTNLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
..|.|.. +|.++.-.. -....+..|.++.|.|...+.|.|.++|.|+++.+.
T Consensus 416 -----------------------A~L~V~a~~P~f~~~p~----~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~ 468 (1051)
T KOG3513|consen 416 -----------------------AELKVLASAPVFPLNPV----ERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLL 468 (1051)
T ss_pred -----------------------eEEEEEccCCCCCCCcc----ceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccc
Confidence 4455543 355433221 123577889999999999999999999999999777
Q ss_pred CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcc
Q psy2776 551 DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVEN 630 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 630 (803)
.+.++.+.. .++|.|.+++.+|+|.|+|.|.|..|.+.....|.|..
T Consensus 469 ~~~r~~i~e---dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd------------------------------ 515 (1051)
T KOG3513|consen 469 QSGRIRILE---DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD------------------------------ 515 (1051)
T ss_pred cCceEEECC---CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec------------------------------
Confidence 777777654 57899999999999999999999999999999999977
Q ss_pred cccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEee
Q psy2776 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFR 708 (803)
Q Consensus 631 ~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~ 708 (803)
+++|...+....+..|+.++|+|.+.-+|.. .|.|++
T Consensus 516 -----------------------------------------~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~ 554 (1051)
T KOG3513|consen 516 -----------------------------------------ATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKK 554 (1051)
T ss_pred -----------------------------------------CceEEeccchhhhccCceEEEEeecccCCCcceEEEEEE
Confidence 7778888888999999999999999766554 799999
Q ss_pred CCeeccCC---CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCCCcccCCccceeee
Q psy2776 709 NNKPLLSS---PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHY 785 (803)
Q Consensus 709 ~~~~l~~~---~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~~~~~~~~~~ 785 (803)
||..++.. ..+.+........|.|.++ +.+|+|.|.|+|.-.+-+.++.+.|.|++++-+|+.+...++...+++.
T Consensus 555 nG~~id~~~~~~~~~~~~~~~~g~L~i~nv-~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~l 633 (1051)
T KOG3513|consen 555 NGRPIDFNPDGDHFEINDGSDSGRLTIANV-SLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARL 633 (1051)
T ss_pred CCEEhhccCCCCceEEeCCcCccceEEEee-ccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEE
Confidence 99988743 2333332222367999999 7999999999999999999999999998888777778877677665555
Q ss_pred eee
Q psy2776 786 LAQ 788 (803)
Q Consensus 786 ~~~ 788 (803)
+|.
T Consensus 634 sW~ 636 (1051)
T KOG3513|consen 634 SWS 636 (1051)
T ss_pred Eee
Confidence 543
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=423.68 Aligned_cols=578 Identities=22% Similarity=0.270 Sum_probs=402.6
Q ss_pred CCCceEEEEEeeccCCcEEEEEEEEcCCCCc---eeeEEEEEe-------cCCCCCC-Cc-eEEEecCCeEEEEeeCCCC
Q psy2776 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA---SATTKVTLL-------SAPGAPD-TP-EIVGRSDSSVTLHWRPPQD 69 (803)
Q Consensus 2 ~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~---~~~~~l~V~-------~~p~~p~-~~-~~~~~~~~~v~l~c~~p~~ 69 (803)
.+..++|.+.++..+|.|.|.|.|.+...+. .....|.+. .+|..+. .| ......|+.|.|.|.+-..
T Consensus 189 ~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~ 268 (1051)
T KOG3513|consen 189 SQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGN 268 (1051)
T ss_pred ecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCC
Confidence 3567899999999999999999999864432 334555552 2232221 11 2344569999999996311
Q ss_pred CCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeec
Q psy2776 70 DGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQE 149 (803)
Q Consensus 70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~ 149 (803)
..|...|. +...............+..|.|.+++.+|.|.|+|.|.|..|. ..+.. .+.+ ..+|.++.
T Consensus 269 --P~P~i~W~--k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~--~~~~~-~v~v-----~a~P~w~~ 336 (1051)
T KOG3513|consen 269 --PTPQIKWR--KVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS--ATHSG-HVTV-----YAPPYWLQ 336 (1051)
T ss_pred --CCCcEEEE--eCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc--ceeeE-EEEE-----ecCchhhc
Confidence 22222221 1111111122223334789999999999999999999999984 33332 2333 46788888
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-e---EEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-N---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
.+++..+..|+++.|.|.+.|.|.|.+.|++|+.++... + ..++ ...|+|.+++.+|+|.|+|.|+|..|....
T Consensus 337 ~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~--~g~L~is~v~~~dsg~YQC~A~Nk~G~i~a 414 (1051)
T KOG3513|consen 337 KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID--DGTLIISNVQESDSGVYQCIAENKYGTIYA 414 (1051)
T ss_pred ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe--CCEEEEEecccccCeEEEeeeecccceEee
Confidence 899999999999999999999999999999999988732 2 3443 457999999999999999999999999999
Q ss_pred EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcc
Q psy2776 226 SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305 (803)
Q Consensus 226 s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (803)
++.|.|...+.....
T Consensus 415 nA~L~V~a~~P~f~~----------------------------------------------------------------- 429 (1051)
T KOG3513|consen 415 NAELKVLASAPVFPL----------------------------------------------------------------- 429 (1051)
T ss_pred eeEEEEEccCCCCCC-----------------------------------------------------------------
Confidence 999999876211100
Q ss_pred ccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
........+..|..+.|.|.+ +.|.+.+.|.|+++.+..+.++.+..+|+
T Consensus 430 ----~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGt------------------------- 480 (1051)
T KOG3513|consen 430 ----NPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGT------------------------- 480 (1051)
T ss_pred ----CccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCc-------------------------
Confidence 001122344569999999999 99999999999988777777887777774
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v 464 (803)
|.|.+++.+|+|.|+|.|.|..|....
T Consensus 481 ----------------------------------------L~I~n~t~~DaG~YtC~A~N~~G~a~~------------- 507 (1051)
T KOG3513|consen 481 ----------------------------------------LEISNVTRSDAGKYTCVAENKLGKAES------------- 507 (1051)
T ss_pred ----------------------------------------EEecccCcccCcEEEEEEEcccCccce-------------
Confidence 889999999999999999999999998
Q ss_pred eeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC--CCeeEE
Q psy2776 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP--RPEISW 542 (803)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p--~~~v~W 542 (803)
...|.|..++.+.. .+....+..|+++.|+|.+.-.+ ...|.|
T Consensus 508 -----------------------------~~~L~Vkd~tri~~------~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W 552 (1051)
T KOG3513|consen 508 -----------------------------TGNLIVKDATRITL------APSNTDVKVGESVTLTCEASHDPSLDITFTW 552 (1051)
T ss_pred -----------------------------EEEEEEecCceEEe------ccchhhhccCceEEEEeecccCCCcceEEEE
Confidence 55666666665422 22467788999999999987554 467899
Q ss_pred eeCCeeecCC---CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE-----------------
Q psy2776 543 MKNGAEITDS---KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI----------------- 602 (803)
Q Consensus 543 ~~~g~~i~~~---~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p----------------- 602 (803)
.+||+.+... ..+.+.-..+.+.|+|.+++.+|+|.|+|.|.....+.+..+.|.|.++|
T Consensus 553 ~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~ 632 (1051)
T KOG3513|consen 553 KKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTAR 632 (1051)
T ss_pred EECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEE
Confidence 9999977533 33333322233689999999999999999999999999999999999988
Q ss_pred -----------------eEeeecccccEEEeeeeCCcc---ceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 603 -----------------IQQQEKNSLKFTKVATLDPST---LQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 603 -----------------~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
++.+......|+...++.... .+.++.+|.|..+|.||++|.|.+|.+++|.......+.
T Consensus 633 lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ 712 (1051)
T KOG3513|consen 633 LSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTP 712 (1051)
T ss_pred EEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecC
Confidence 566666677787777443322 257789999999999999999999999988766554433
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC---------ceEEeeCCeeccCCCCeEEEeeCceEEEEEe
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP---------SIVWFRNNKPLLSSPKKREIFDGENIILELK 733 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---------~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~ 733 (803)
.. .|.. -+.++....|+.-.|.-+-...|.- .|.|+..|..-.=.. .+..+.+...+.+.
T Consensus 713 ea-------~P~~--~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~--~~v~~~d~~~~V~~ 781 (1051)
T KOG3513|consen 713 EA-------APSV--NPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKE--VIVSNQDQPRYVVS 781 (1051)
T ss_pred CC-------CCcc--CCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccce--eEecccCCceEEEc
Confidence 22 2221 2334555566666665555432221 477877665411000 11111112233333
Q ss_pred cCCCCCCc--eeEEEEEEccCcceeeeEEEEEE----eeccCCCCCcccCCccceeeeee
Q psy2776 734 EADSETDA--GDYKVVATNELGSATHGARVTVD----VEKVGRPSINSIDIDLNHVHYLA 787 (803)
Q Consensus 734 ~v~~~~D~--G~Y~C~a~N~~G~~~~~~~l~V~----~~~~~pp~~~~~~~~~~~~~~~~ 787 (803)
+- +..-. =.....|.|..|....+-...+- .|+.+|+.+.....+...+...|
T Consensus 782 ~~-st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W 840 (1051)
T KOG3513|consen 782 NE-STEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSW 840 (1051)
T ss_pred CC-CCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEe
Confidence 32 22222 33467889999999776666653 34444555555566666666666
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=370.61 Aligned_cols=518 Identities=21% Similarity=0.292 Sum_probs=374.1
Q ss_pred ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee-------------eeeEEEEecccc-----CCeEEEEE
Q psy2776 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-------------TSTTYEVTKLTT-----KHEYMFRV 116 (803)
Q Consensus 55 ~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~-----~d~g~y~c 116 (803)
.+|.++.|.|.+-...+ ..+.+ .|++.+. ++++|.|.++.. -++|.|+|
T Consensus 52 ~~~~svlLecs~~~~~~----~~~~i---------~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc 118 (1381)
T KOG4221|consen 52 MEGSSVLLECSAYAAGG----TSVKI---------EWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQC 118 (1381)
T ss_pred ccccceEEeccccccCC----CCeeE---------EEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEE
Confidence 46889999998754443 22333 3433332 378888988876 88999999
Q ss_pred EEEcc-CccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecC
Q psy2776 117 AAVNA-IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN 195 (803)
Q Consensus 117 ~a~~~-~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~ 195 (803)
.|.-. .|.. .+.. ..+.+ ...+.|...+.+..+..|+++.|+|.+.+.|.|.+.|.+++.++..........
T Consensus 119 ~atv~~~gsi-~Sr~-a~v~~-----a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp 191 (1381)
T KOG4221|consen 119 LATVEDVGSI-LSRT-AKVAL-----AGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP 191 (1381)
T ss_pred EEEcccccee-ecce-EEEEe-----cccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC
Confidence 99765 2221 2221 22222 355667777888999999999999999999999999999998766332223334
Q ss_pred eeEEEEecCCCCcceEEEEEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEe
Q psy2776 196 VARFTVVNCSESSEGRYTCKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVK 274 (803)
Q Consensus 196 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (803)
...|.|.++++.|.|.|+|.+++...... ..++|.|...+.
T Consensus 192 sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~-------------------------------------- 233 (1381)
T KOG4221|consen 192 SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPG-------------------------------------- 233 (1381)
T ss_pred CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcc--------------------------------------
Confidence 46799999999999999999998765433 346777763310
Q ss_pred eccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeE
Q psy2776 275 SVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHI 353 (803)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~ 353 (803)
...... +...|....+.+|+++.|.|.+ +.|.|++.|.+||+.|.-+....
T Consensus 234 ---------------------------~~~~~~-fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~ri 285 (1381)
T KOG4221|consen 234 ---------------------------ALNKLV-FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRI 285 (1381)
T ss_pred ---------------------------ccccee-eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEE
Confidence 001111 2234566677789999999999 89999999999999887543211
Q ss_pred EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCC
Q psy2776 354 ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433 (803)
Q Consensus 354 ~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 433 (803)
+. .+...|.|.+++.+
T Consensus 286 vl----------------------------------------------------------------~g~~slliS~a~~~ 301 (1381)
T KOG4221|consen 286 VL----------------------------------------------------------------VGGSSLLISNATDD 301 (1381)
T ss_pred EE----------------------------------------------------------------ecccceEEeccccc
Confidence 11 11234889999999
Q ss_pred CceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeec
Q psy2776 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513 (803)
Q Consensus 434 d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~ 513 (803)
|+|.|+|+|+|....... ..+++|+.+|.+....
T Consensus 302 dSg~YtC~Atn~~D~ida------------------------------------------saev~V~a~P~~~~~p---- 335 (1381)
T KOG4221|consen 302 DSGKYTCRATNTNDSIDA------------------------------------------SAEVTVLAPPGFTKAP---- 335 (1381)
T ss_pred cCceEEEEecCCCccccc------------------------------------------ceEEEEEcCCCCCCCC----
Confidence 999999999994433333 5677888888775543
Q ss_pred cccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.++..+.|.|.+.|.|.|.+.|+|||..+..+..+++... .. |.|..+-..|.|.|.|.++|+.|.+...
T Consensus 336 --~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~--~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 336 --TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGG--GN-LRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred --cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCC--CC-cEEEEEecccchhhhhhhccCcccccch
Confidence 367778899999999999999999999999998888766666542 23 9999999999999999999999999999
Q ss_pred EEEEEeeeE------------------eEeeecccccEEEee---------------eeC---------CccceEEEccc
Q psy2776 594 LSLQVLGYI------------------IQQQEKNSLKFTKVA---------------TLD---------PSTLQYTVENL 631 (803)
Q Consensus 594 ~~l~V~~~p------------------~~~~~~~~~~w~~~~---------------~~~---------~~~~~~~~~~~ 631 (803)
+.|.|...| ....-..+++|.+.. +.+ +...+.+++++
T Consensus 411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl 490 (1381)
T KOG4221|consen 411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNL 490 (1381)
T ss_pred hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeec
Confidence 998666554 111111233333222 111 11278899999
Q ss_pred ccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC----ceEEe
Q psy2776 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWF 707 (803)
Q Consensus 632 ~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~----~v~W~ 707 (803)
.+...|.|||+|.|..|.+.++..+.+.+... +|. . ...+..-.+.|.+.+.|++ .+.||
T Consensus 491 ~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE--------gp~-------~-~~a~ats~~ti~v~WepP~~~n~~I~~y 554 (1381)
T KOG4221|consen 491 SPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE--------GPV-------Q-LQAYATSPTTILVTWEPPPFGNGPITGY 554 (1381)
T ss_pred ccceeEEEEEeccCcccCCccCCceEEecCCC--------CCc-------c-ccccccCcceEEEEecCCCCCCCCceEE
Confidence 99999999999999999999887766654211 111 1 3345677789999999888 89999
Q ss_pred eCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE---eeccCCCC-CcccCCcccee
Q psy2776 708 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD---VEKVGRPS-INSIDIDLNHV 783 (803)
Q Consensus 708 ~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~---~~~~~pp~-~~~~~~~~~~~ 783 (803)
+..-... +.......+.+..++.|.++ .+.+.-.|.|+|.|++|..-.+..++|. ..+.+||. +.....+++.+
T Consensus 555 k~~ys~~-~~~~~~~~~~n~~e~ti~gL-~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsV 632 (1381)
T KOG4221|consen 555 KLFYSED-DTGKELRVENNATEYTINGL-EKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSV 632 (1381)
T ss_pred EEEEEcC-CCCceEEEecCccEEEeecC-CCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeE
Confidence 9765544 33344555666678999999 7899999999999999999888888886 23444555 77666777778
Q ss_pred eeeeeeEE
Q psy2776 784 HYLAQSTE 791 (803)
Q Consensus 784 ~~~~~~~~ 791 (803)
..+|+-.+
T Consensus 633 rVsW~pP~ 640 (1381)
T KOG4221|consen 633 RVSWLPPP 640 (1381)
T ss_pred EEEccCCC
Confidence 87776433
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=332.52 Aligned_cols=635 Identities=20% Similarity=0.227 Sum_probs=416.5
Q ss_pred CceEEEEEeecc-----CCcEEEEEEEEcC-CCC-ceeeEEEEEecCCCCCCCce-EEEecCCeEEEEeeCCCCCCCCCe
Q psy2776 4 DSATLTIVKFED-----KDLGDYTISLSNA-LGQ-ASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLHWRPPQDDGHSPV 75 (803)
Q Consensus 4 ~~~~L~I~~~~~-----~D~G~Y~C~a~n~-~g~-~~~~~~l~V~~~p~~p~~~~-~~~~~~~~v~l~c~~p~~~g~~~~ 75 (803)
.+++|.|.++-. -|+|.|+|.|+-. .|. .+..+.|.+...+.....++ .....|+.+.+.|..... ..+.
T Consensus 94 sNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e--~~p~ 171 (1381)
T KOG4221|consen 94 SNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAE--PVPT 171 (1381)
T ss_pred cCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCc--cCce
Confidence 357888888766 7999999999855 454 36678888888887766554 334569999999986542 1221
Q ss_pred EEEEEEeecCCCceeE--EEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcC
Q psy2776 76 TGYVLESHDKDEFMVW--NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKD 153 (803)
Q Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~ 153 (803)
. .+ .++.. .+.| +.+...++.|.|.+++++|.|.|+|.+.+.+-. ..+....+.+...+.....-.|...+.+
T Consensus 172 i--~w-~kn~~-pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~-r~S~~a~ltv~s~~~~~~~~~fl~~p~~ 246 (1381)
T KOG4221|consen 172 I--MW-LKNDQ-PLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQ-RTSNEAELTVLSDPGALNKLVFLDEPSN 246 (1381)
T ss_pred e--EE-ecccc-cccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcC-CccceeEEEecCCcccccceeeecCCCc
Confidence 1 11 12111 1122 223334899999999999999999999986533 2344444444434544455567777899
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
..+.+|+++.|.|.+.|.|.|+|.|.+|+..+.-. ++.. .+...|.|.+++.+|+|.|+|+|.|.......++.|.|
T Consensus 247 ~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl-~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V 325 (1381)
T KOG4221|consen 247 AVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVL-VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTV 325 (1381)
T ss_pred cccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEE-ecccceEEeccccccCceEEEEecCCCcccccceEEEE
Confidence 99999999999999999999999999999877633 3333 34567999999999999999999998888888899999
Q ss_pred eeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcccccccc
Q psy2776 232 QGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK 311 (803)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (803)
..+|. +.+
T Consensus 326 ~a~P~------------------------------------------------------------------------~~~ 333 (1381)
T KOG4221|consen 326 LAPPG------------------------------------------------------------------------FTK 333 (1381)
T ss_pred EcCCC------------------------------------------------------------------------CCC
Confidence 87742 122
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee--
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK-- 388 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~-- 388 (803)
.|......++.++.|.|.+ +.|.+++.|+|||..+..++.+++...+. |.|..+-..|.|.|.|.++|..|...
T Consensus 334 ~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 334 APTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred CCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccch
Confidence 3444555569999999999 89999999999999988888888777665 88888999999999999999776422
Q ss_pred -----------------------------------eeeeec---CCCceeeeeeecCcceeeeeee-EEecCeeEEEEEe
Q psy2776 389 -----------------------------------LKWLDF---GSGGWWFESKYKDDSLIKGRNI-TYENNVARFTVVN 429 (803)
Q Consensus 389 -----------------------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~ 429 (803)
++|-.. +.+...+.+.|+.+.....+.+ +...+ ..+++.+
T Consensus 411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g-~~~tv~n 489 (1381)
T KOG4221|consen 411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPG-IQVTVQN 489 (1381)
T ss_pred hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCc-eEEEeee
Confidence 223210 1111222233333333322222 22233 7788888
Q ss_pred ccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccce
Q psy2776 430 CSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIK 509 (803)
Q Consensus 430 ~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~ 509 (803)
++..-...++|.|.|..|.... +..|.|..+|..|.
T Consensus 490 l~p~t~Y~~rv~A~n~~g~g~s------------------------------------------S~pLkV~t~pEgp~-- 525 (1381)
T KOG4221|consen 490 LSPLTMYFFRVRAKNEAGSGES------------------------------------------SAPLKVTTQPEGPV-- 525 (1381)
T ss_pred cccceeEEEEEeccCcccCCcc------------------------------------------CCceEEecCCCCCc--
Confidence 8888888888888899988888 44566666665322
Q ss_pred eeeccccceEEeecceeEEEEEEcCcCCC----eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 510 LVDSNLKSQRLSVKSQWKVEVKYFGFPRP----EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 510 ~~~~~~~~~~v~~g~~v~l~C~~~g~p~~----~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
. +..+..-.++|.+...|++ .+.|+|......+ .......+.+...++|.++.+.+.-.|.|+|.|
T Consensus 526 --------~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~-~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N 595 (1381)
T KOG4221|consen 526 --------Q-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDD-TGKELRVENNATEYTINGLEKYTEYSIRVVAYN 595 (1381)
T ss_pred --------c-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCC-CCceEEEecCccEEEeecCCCccceEEEEEEec
Confidence 2 4556677889999988887 8999998765552 223334455678999999999999999999999
Q ss_pred CCCCeEEEEEEEEeeeE-------------eEeeecccccEEEeee---------------------------eCCccce
Q psy2776 586 AAGSTSLDLSLQVLGYI-------------IQQQEKNSLKFTKVAT---------------------------LDPSTLQ 625 (803)
Q Consensus 586 ~~g~~s~s~~l~V~~~p-------------~~~~~~~~~~w~~~~~---------------------------~~~~~~~ 625 (803)
..|....+..+.|.... +.......+.|..... ......+
T Consensus 596 ~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~ 675 (1381)
T KOG4221|consen 596 SAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQ 675 (1381)
T ss_pred CCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhh
Confidence 99998777777776432 1111112223332221 1125567
Q ss_pred EEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC-eEEEEEEEeecCCC--
Q psy2776 626 YTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKASPAP-- 702 (803)
Q Consensus 626 ~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g~p~~-- 702 (803)
+.+.+|+++..|.||+.|.|..|.++++.-....+...-.-...+.+|. ...+..|. .+.+ .-.|++
T Consensus 676 ~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps------~l~~~~g~~si~v----sW~Pp~~~ 745 (1381)
T KOG4221|consen 676 YLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPS------ELHVHPGSNSIVV----SWTPPPHP 745 (1381)
T ss_pred hHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCc------eeeeccCceeEEE----EeCCCCCh
Confidence 7788899999999999999999999887655444422111111111222 22333332 2222 223444
Q ss_pred -------ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE-e---------
Q psy2776 703 -------SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD-V--------- 765 (803)
Q Consensus 703 -------~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~-~--------- 765 (803)
.+-|. .|..+.....+.+.....++. |.++ .....-..+-+|.|..|..-...+-... .
T Consensus 746 ~~~vrgY~ig~r-~g~~~p~~~tIrl~~~~s~y~--l~~L-e~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~ 821 (1381)
T KOG4221|consen 746 NIVVRGYKIGYR-PGSGIPDTGTIRLDEKVSYYN--LEQL-EPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVD 821 (1381)
T ss_pred hhhhcceEEeee-cccCCCCCccEEecceeeEEE--EEec-ccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCC
Confidence 13343 445454444444443344444 4444 2233344577889998887544433221 1
Q ss_pred -eccCCCCCcccCCccceeeeeeeeE
Q psy2776 766 -EKVGRPSINSIDIDLNHVHYLAQST 790 (803)
Q Consensus 766 -~~~~pp~~~~~~~~~~~~~~~~~~~ 790 (803)
+...|-.++....+...+.|.|-++
T Consensus 822 tp~~ppvgv~A~~~S~tsI~v~w~~~ 847 (1381)
T KOG4221|consen 822 TPMLPPVGVRANALSSTSIRVTWADN 847 (1381)
T ss_pred CCCCCcccccccccccceEEEEEecC
Confidence 1112223334444555677777664
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=330.48 Aligned_cols=430 Identities=24% Similarity=0.367 Sum_probs=327.2
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-----eeEEEecC-eeEEEEecC--CCCcceEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-----RNITYENN-VARFTVVNC--SESSEGRYT 213 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-----~~~~~~~~-~~~L~i~~v--~~~d~G~Y~ 213 (803)
..+|+|+..+.+..+.-|+.++|.|.+.|.|+|+|.|+|+|..... -++.+..+ ...|++..= ...|.|.|+
T Consensus 29 d~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~ 108 (1281)
T KOG4222|consen 29 DQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYS 108 (1281)
T ss_pred cCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeE
Confidence 4688999999999999999999999999999999999999975432 12333222 122222111 223999999
Q ss_pred EEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 214 CKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 214 C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|.+.|..|.... .+.|.+......
T Consensus 109 cvasn~~g~avSr~a~L~vavlrdd------------------------------------------------------- 133 (1281)
T KOG4222|consen 109 CVASNRLGEAVSRGASLIVAVLRDD------------------------------------------------------- 133 (1281)
T ss_pred eeecCccceeeecCceEEEEEechh-------------------------------------------------------
Confidence 999999997644 455555443100
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeecc--ccceeEEEEcCceeEEEEeec
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIK--ESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~--~~~~~~~~~~~~~~~l~i~~~ 368 (803)
|-. .+.......|+.++|+|.- +.|.+++.|.|+|+++. ......+.+.|.
T Consensus 134 ---------------frv-~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~--------- 188 (1281)
T KOG4222|consen 134 ---------------FRV-SPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN--------- 188 (1281)
T ss_pred ---------------ccc-CcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc---------
Confidence 000 1111334459999999997 89999999999999987 333444444442
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
|.|.++...|+|.|.|+++|..|.
T Consensus 189 --------------------------------------------------------LlIsnvrksD~GtY~CVatNmvG~ 212 (1281)
T KOG4222|consen 189 --------------------------------------------------------LLISNVRKSDEGTYACVATNMVGE 212 (1281)
T ss_pred --------------------------------------------------------EEEeccccCCCceeeeeecccccc
Confidence 889999999999999999999998
Q ss_pred eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEE
Q psy2776 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528 (803)
Q Consensus 449 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l 528 (803)
.... ...|.|..+|.+- ..++.+.+.+|..+.+
T Consensus 213 ReS~-----------------------------------------~A~lsv~e~P~f~------~rp~~~~v~~g~~~~f 245 (1281)
T KOG4222|consen 213 RESI-----------------------------------------PARLSVQEKPWFW------KRPKDLAVLVGAAAEF 245 (1281)
T ss_pred cccc-----------------------------------------cceeeeccCCccc------cccccceeeccccccc
Confidence 8874 4566777777542 2335788899999999
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE------
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI------ 602 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p------ 602 (803)
.|.+.|.|.|.+.|.|++..++.+ ++.+ ..++.+|.|.+++..|.|.|.|.|.|..|...++..+.|..+|
T Consensus 246 ~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i--~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp 322 (1281)
T KOG4222|consen 246 DCRVGGDPQPTVRWKKDDPSLPRS-RYSI--LDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKP 322 (1281)
T ss_pred ccccCCCCCCceeeeccCCCCCcc-ceee--eeccccccccccCCCcccceeeeccccccccccccceEEecCccccccc
Confidence 999999999999999988777653 3333 3356789999999999999999999999999999999999998
Q ss_pred ----------------eEeeecccccEEEeeeeC----------------CccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 603 ----------------IQQQEKNSLKFTKVATLD----------------PSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 603 ----------------~~~~~~~~~~w~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
.-..+...+.|.+.+..+ .....++++++++.+.+.|-|++.+..|.+
T Consensus 323 ~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 323 RDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred CccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence 222334566677766432 234589999999999999999999999887
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEE
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L 730 (803)
..-....+.. .+....-+|.+...+.+.+...++.+.|.|.+.|.|.+.+.|+++|-.+......... .....|
T Consensus 403 ~~~a~~~qt~----~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~--~~~~~l 476 (1281)
T KOG4222|consen 403 LTKAYLEQTD----VLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ--QEIGSL 476 (1281)
T ss_pred ccceeEEEEe----eeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce--eeecee
Confidence 5443333222 1222244788888888889999999999999999999999999999887755433222 223469
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|.+. ..-|.|.|+|.|.+..|+..-++.|.|.
T Consensus 477 ~i~dl-~~~DtG~YTc~as~~~ges~wSatl~v~ 509 (1281)
T KOG4222|consen 477 RIRDL-KGPDTGRYTCIASDESGESTWSATLTVE 509 (1281)
T ss_pred eeeee-ecCCCcceeeeccCcccccccceeeEhh
Confidence 99999 7899999999999999999999999985
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=306.88 Aligned_cols=464 Identities=24% Similarity=0.372 Sum_probs=327.9
Q ss_pred CcEEEEEEEEcCCCCc-eeeEEEEEecCCC-CCCCc-eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEE
Q psy2776 17 DLGDYTISLSNALGQA-SATTKVTLLSAPG-APDTP-EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK 93 (803)
Q Consensus 17 D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~-~p~~~-~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~ 93 (803)
|.|.|.|.|.|..|.. +....|.|.-.++ .-..+ .+....|..+.|.|.+|..-....+ .|+-+.+...-...-..
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptv-Sw~Kdg~pl~~~~~~~~ 181 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTV-SWVKDGKPLDHYDVPII 181 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcc-eeecCCCccccccceeE
Confidence 9999999999999976 4445555433222 11111 2445579999999999866443333 23322222111111122
Q ss_pred eeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCC
Q psy2776 94 IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173 (803)
Q Consensus 94 ~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~ 173 (803)
...+++.|.|.++..+|+|.|.|.+.|.+|+.+.... .+.+ ..+|.|...+.+..+..|..+.+.|.+.|.|.
T Consensus 182 ~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A--~lsv-----~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~ 254 (1281)
T KOG4222|consen 182 ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPA--RLSV-----QEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ 254 (1281)
T ss_pred EEecCCcEEEeccccCCCceeeeeecccccccccccc--eeee-----ccCCccccccccceeecccccccccccCCCCC
Confidence 2235899999999999999999999999998654432 2222 56788999999999999999999999999999
Q ss_pred CeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeE
Q psy2776 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKL 253 (803)
Q Consensus 174 p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~ 253 (803)
|.+.|.+++..++..+........+|.|.++++.|.|.|.|.+.|..|....++.++|+..|-
T Consensus 255 P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~----------------- 317 (1281)
T KOG4222|consen 255 PTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPS----------------- 317 (1281)
T ss_pred CceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcc-----------------
Confidence 999999998888877777777778999999999999999999999999999999999998841
Q ss_pred EEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC
Q psy2776 254 VIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS 332 (803)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~ 332 (803)
|.. -+..+.+..|..++|.|.+ |+
T Consensus 318 ------------------------------------------------------f~k-kp~dq~v~lg~~vt~pc~~~gn 342 (1281)
T KOG4222|consen 318 ------------------------------------------------------FGK-KPRDQKVALGGTVTFPCETLGN 342 (1281)
T ss_pred ------------------------------------------------------ccc-ccCccccccCceEEeeeecCCC
Confidence 111 1233445568999999999 99
Q ss_pred CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceee
Q psy2776 333 PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIK 412 (803)
Q Consensus 333 p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (803)
|.+.+.|.|.|...-. ... +....+..|.+.
T Consensus 343 P~PavfW~keg~q~ll------f~~--------~p~~~~~r~svs----------------------------------- 373 (1281)
T KOG4222|consen 343 PPPAVFWLKEGSQDLL------FSA--------SPPSSNGRGSVS----------------------------------- 373 (1281)
T ss_pred CCcceEEeccCcceec------ccC--------CCCCcCccceec-----------------------------------
Confidence 9999999987532110 000 000000001111
Q ss_pred eeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhccccccccccc
Q psy2776 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKT 492 (803)
Q Consensus 413 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (803)
. ..+|+|.+++..|.|.|.|...+..|.....+. .+.+.+
T Consensus 374 -------~-~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~--------~~qt~~------------------------ 413 (1281)
T KOG4222|consen 374 -------P-TGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAY--------LEQTDV------------------------ 413 (1281)
T ss_pred -------C-CCCcccccccccccceEeeccccccccccccee--------EEEEee------------------------
Confidence 1 115999999999999999998887777666432 111110
Q ss_pred ceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec
Q psy2776 493 RTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV 572 (803)
Q Consensus 493 ~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~ 572 (803)
+.---||- +......++.+.++..+.|.|.+.|.|.+.+.|+++|-.+..... ++. ....+.|+|.+..
T Consensus 414 ----~~~~rPpp-----~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~-~~s-~~~~~~l~i~dl~ 482 (1281)
T KOG4222|consen 414 ----LTDSRPPP-----IIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDS-RIS-QQEIGSLRIRDLK 482 (1281)
T ss_pred ----eccCCCCc-----eeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCc-ccc-eeeeceeeeeeee
Confidence 11101111 233344577888899999999999999999999999877655431 111 1235789999999
Q ss_pred cCcCeEEEEEEEcCCCCeEEEEEEEEeeeE------------------------eEeeecccccEEEeeee---------
Q psy2776 573 RADTSTYTVTATNAAGSTSLDLSLQVLGYI------------------------IQQQEKNSLKFTKVATL--------- 619 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p------------------------~~~~~~~~~~w~~~~~~--------- 619 (803)
..|.|.|+|.|.+..|..+.++.|.|.+.. --.+..-.+.|......
T Consensus 483 ~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yi 562 (1281)
T KOG4222|consen 483 GPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYI 562 (1281)
T ss_pred cCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhH
Confidence 999999999999999999999999998664 11122234556555441
Q ss_pred -----------------CCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 620 -----------------DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 620 -----------------~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
.-+...+.|..|+|...|.|.|+|.|+.|.+.++.......
T Consensus 563 ieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vr 620 (1281)
T KOG4222|consen 563 IEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVR 620 (1281)
T ss_pred HHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccc
Confidence 01345788999999999999999999999887766555443
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=251.78 Aligned_cols=291 Identities=25% Similarity=0.405 Sum_probs=219.4
Q ss_pred CCccccccccCCceeeeccccceeEEEEe-c--CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVEL-S--SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~--~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
..|++.+..++.....+ .|+.++|+|.+ + ..+.++.|.++++.+..-. +. ++. +.+.
T Consensus 500 DspkpqI~~qPe~~~al-~g~nirftC~a~sssasplsi~WR~dnevq~rv~---ve-d~a-~~~~-------------- 559 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSAL-IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD---VE-DFA-TFLS-------------- 559 (873)
T ss_pred CCCCcceecCchHhhhh-hccceEEEEEeccCCCCCceeEeeeccccCcccc---hh-cch-hhhh--------------
Confidence 45666666655444444 49999999999 4 4567899999976443211 00 000 0000
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
+ .++|.. + .-......|.+.|++..|+|.|+|+++|..|..-+
T Consensus 560 q-------------------------~r~~~~--~---e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStys------- 602 (873)
T KOG4194|consen 560 Q-------------------------NRNGTF--G---EREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYS------- 602 (873)
T ss_pred h-------------------------hccCcc--c---hhhhhhheeeeeeeecccCceEEEEEecccCcchh-------
Confidence 0 000000 0 00123456999999999999999999999998877
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP 538 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~ 538 (803)
+.+.|.|...|.+-.. +....+..|+.+.|.|.+.|.|.|
T Consensus 603 ----------------------------------qk~KltV~~~PsFtkt------P~dltl~tg~mArl~CaAtG~P~P 642 (873)
T KOG4194|consen 603 ----------------------------------QKAKLTVNQAPSFTKT------PEDLTLRTGQMARLECAATGHPRP 642 (873)
T ss_pred ----------------------------------heeEEEeeccCccccC------cccceeecccceeeeeeccCCCCc
Confidence 3677888887765333 357889999999999999999999
Q ss_pred eeEEeeCCee-ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEee
Q psy2776 539 EISWMKNGAE-ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVA 617 (803)
Q Consensus 539 ~v~W~~~g~~-i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~ 617 (803)
.+.|.|+|.. .+.....++....+.-...|.||+.+|.|.|+|.|.|..|..+++++|.|.+
T Consensus 643 eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------------- 705 (873)
T KOG4194|consen 643 EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------------- 705 (873)
T ss_pred ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec-----------------
Confidence 9999998764 5554444444444556789999999999999999999999999999999988
Q ss_pred eeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEe
Q psy2776 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK 697 (803)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~ 697 (803)
.|.|..++..+.|..|+++.|+|.+.
T Consensus 706 ------------------------------------------------------~p~f~~PL~~~~V~~get~vlqC~a~ 731 (873)
T KOG4194|consen 706 ------------------------------------------------------TPSFSIPLEDQLVVVGETLVLQCLAE 731 (873)
T ss_pred ------------------------------------------------------CCcccccccceEEEecceEEEEEecC
Confidence 45566677888999999999999999
Q ss_pred ecCC-CceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 698 ASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 698 g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|.|. |...|+|++++|...++...... .-.|.+.+. ..+|+|.|+|...|..|.-...+.+.|
T Consensus 732 ~~~a~pr~~W~k~d~pil~t~rh~f~d~--dQllvv~~~-~~~daG~yTcem~~~~~~~~~~i~l~~ 795 (873)
T KOG4194|consen 732 GAPADPRLEWFKEDKPILITERHTFPDG--DQLLVVKEN-LVEDAGIYTCEMSNTLGTERIHICLLV 795 (873)
T ss_pred CCCCCccccccCCCCceEEeecccCCCC--CeEEEEEeh-hhhhcceEEEEEEeeccceeeEEEEEE
Confidence 9988 99999999999987766543322 336778888 689999999999999999877777766
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=229.74 Aligned_cols=210 Identities=18% Similarity=0.219 Sum_probs=145.5
Q ss_pred EEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC--CC
Q psy2776 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ--SP 502 (803)
Q Consensus 425 L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~--~~ 502 (803)
|.|.++..+|+|.|+|.|.|..|....+ +.|.|. .+
T Consensus 84 l~i~~~~~~DsG~Y~C~a~N~~g~~~~s------------------------------------------~~L~V~~~~~ 121 (326)
T PHA02785 84 MLILNPTQSDSGIYICITKNETYCDMMS------------------------------------------LNLTIVSVSE 121 (326)
T ss_pred EEEcccCcccCeEEEEEEECCCcceEEE------------------------------------------EEEEEEecCC
Confidence 6688889999999999999988766652 222222 11
Q ss_pred CCCccceeeeccccceEEeecceeEEEEE-----EcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVK-----YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~-----~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
|.+... ...+.+.+|..+.|.|. ..+.|++.++|++++. +. ..++.. ..++.|.|.+++.+|+|
T Consensus 122 ~~~~~~------~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~~~---~~~~~L~i~~v~~~d~G 190 (326)
T PHA02785 122 SNIDLI------SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRLKQ---RTPGIITIEDVRKNDAG 190 (326)
T ss_pred Ccccee------eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-CcceEe---cCCCeEEEeecChhhCe
Confidence 111100 11345678999999997 3467889999988642 32 233322 12468999999999999
Q ss_pred EEEEEEEcCCCCeEEEE----EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 578 TYTVTATNAAGSTSLDL----SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~----~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|+|.|.|..|.....+ .|.|..+
T Consensus 191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~---------------------------------------------------- 218 (326)
T PHA02785 191 YYTCVLKYIYGDKTYNVTRIVKLEVRDR---------------------------------------------------- 218 (326)
T ss_pred EEEEEEEeccCCEEEeEEEEEEEEEecc----------------------------------------------------
Confidence 99999999988765433 3333221
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC---ceEEeeCCeeccCCC-----CeEEEe--
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNKPLLSSP-----KKREIF-- 723 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~~~~l~~~~-----~~~~~~-- 723 (803)
..||.+ ..+....+..|+.++|.|.+.|.|.+ .+.|++||..|.... ++....
T Consensus 219 ----------------~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~ 281 (326)
T PHA02785 219 ----------------IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKI 281 (326)
T ss_pred ----------------CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCc
Confidence 115544 34466778889999999999998874 799999999886432 211111
Q ss_pred ---eC---ceEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 724 ---DG---ENIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 724 ---~~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
+. ....|.|.++ +.+|+|.|+|.|.|..|....
T Consensus 282 ~~~~~~~~~~~~L~I~~V-~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 282 YTTDKRRVITSRLNINPV-KEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred cccccceeeeEEEEECCc-chhcCeeeEEEEEeccCceEe
Confidence 11 1357999999 899999999999998865543
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=228.41 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=172.2
Q ss_pred eeeecCCcEEEEEEE-----CccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 154 SVAGFQSSVTLECVV-----SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
..+.+|+.+.|.|.+ .|.|.+++.|+|++.... .....+ ....|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-~~~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND-RIIPID-NGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-eEEEcc-CCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 445689999999997 688999999999975322 222222 2345889999999999999999999988888888
Q ss_pred EEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccc
Q psy2776 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEF 308 (803)
Q Consensus 229 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (803)
|.|..... +...+
T Consensus 114 L~V~~~~~-------------------------------------------------------------------~~~~~ 126 (326)
T PHA02785 114 LTIVSVSE-------------------------------------------------------------------SNIDL 126 (326)
T ss_pred EEEEecCC-------------------------------------------------------------------Cccce
Confidence 88865510 00000
Q ss_pred cccCCceeeeccccceeEEEE-----e-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 309 LSKLPSVTLVPHLGDATFQVE-----L-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 309 ~~~~~~~~~~~~g~~~~l~C~-----~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
.+..+.+.+|+.+.|.|. . ++|.+.+.|++++. +.. .++...
T Consensus 127 ---~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~-~r~~~~--------------------------- 174 (326)
T PHA02785 127 ---ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRN-KRLKQR--------------------------- 174 (326)
T ss_pred ---eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCC-cceEec---------------------------
Confidence 011123456889999996 2 57899999987642 211 111111
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
....|.|.+++.+|.|.|+|.|.|..|...... .
T Consensus 175 --------------------------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~-------t- 208 (326)
T PHA02785 175 --------------------------------------TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNV-------T- 208 (326)
T ss_pred --------------------------------------CCCeEEEeecChhhCeEEEEEEEeccCCEEEeE-------E-
Confidence 012489999999999999999999877654321 0
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC---Ce
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR---PE 539 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~---~~ 539 (803)
+.+.|.|..+...|.+. .+....+..|+.+.|.|.+.|.|. +.
T Consensus 209 ------------------------------~~v~l~V~~~~~pp~~~----~p~~~~~~~G~~v~L~C~a~g~P~~~~~~ 254 (326)
T PHA02785 209 ------------------------------RIVKLEVRDRIIPPTMQ----LPEGVVTSIGSNLTIACRVSLRPPTTDAD 254 (326)
T ss_pred ------------------------------EEEEEEEeccCCCceec----CCCcEEecCCCcEEEEEEEECCCCCCCce
Confidence 12223332211111110 112466778999999999999887 48
Q ss_pred eEEeeCCeeecCCC-----cEEEEec--------CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 540 ISWMKNGAEITDSK-----ACRIFID--------EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 540 v~W~~~g~~i~~~~-----~~~~~~~--------~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.|+|||..|.... ++..... .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 255 v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 255 VFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 99999999886421 2221110 014689999999999999999999987543
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=226.41 Aligned_cols=276 Identities=21% Similarity=0.344 Sum_probs=209.3
Q ss_pred CCCCCeeeccCcCeeeecCCcEEEEEEECc--cCCCeeEEEEcCeecccee------EEEe----------cCeeEEEEe
Q psy2776 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSG--VPTPDIKWYKDDSLIKGRN------ITYE----------NNVARFTVV 202 (803)
Q Consensus 141 ~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g--~p~p~i~W~~~~~~~~~~~------~~~~----------~~~~~L~i~ 202 (803)
+...|+|...|..+....|..++|+|.+.+ ..+-.+.|.++......-. +..+ .....|.+.
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 356688888888888889999999999986 3444799999887443211 1111 123579999
Q ss_pred cCCCCcceEEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 203 NCSESSEGRYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
||...|+|.|+|++.|..|.... .+.|.|...|.
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~Ps--------------------------------------------- 614 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPS--------------------------------------------- 614 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEeeccCc---------------------------------------------
Confidence 99999999999999999998765 58888887741
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCee-ccccc--eeEEEEc
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKE-IKESA--RHIITSR 357 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~-l~~~~--~~~~~~~ 357 (803)
+.+.|....+..|+.+.|.|.+ |.|.|+|.|.|+|-. ++... +..+..+
T Consensus 615 ---------------------------FtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe 667 (873)
T KOG4194|consen 615 ---------------------------FTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE 667 (873)
T ss_pred ---------------------------cccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC
Confidence 2223444555669999999999 999999999998644 44322 2222111
Q ss_pred CceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCcee
Q psy2776 358 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGR 437 (803)
Q Consensus 358 ~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 437 (803)
| -.+-|.|++.+|+|.
T Consensus 668 --------------d--------------------------------------------------d~f~Itnvk~eD~Gi 683 (873)
T KOG4194|consen 668 --------------D--------------------------------------------------DVFFITNVKIEDQGI 683 (873)
T ss_pred --------------C--------------------------------------------------CEEEEecccccccce
Confidence 1 126689999999999
Q ss_pred EEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc
Q psy2776 438 YTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517 (803)
Q Consensus 438 Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 517 (803)
|+|.|.|..|..+. ...|.|...|.+.. ++++
T Consensus 684 YtC~A~n~AG~isa------------------------------------------nAtL~V~e~p~f~~------PL~~ 715 (873)
T KOG4194|consen 684 YTCTAQNVAGQISA------------------------------------------NATLTVLETPSFSI------PLED 715 (873)
T ss_pred eEEeeeccccceee------------------------------------------ceEEEEecCCcccc------cccc
Confidence 99999999999888 45667777765432 2457
Q ss_pred eEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+.+..|+++.|+|...+.|+ |.+.|+|++++|.-..+... .++..-|.+.+...+|+|.|+|.+.|..|..-.-+.+
T Consensus 716 ~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l 793 (873)
T KOG4194|consen 716 QLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICL 793 (873)
T ss_pred eEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEE
Confidence 89999999999999999988 99999999988765544332 3345678889999999999999999999988777777
Q ss_pred EEeeeE
Q psy2776 597 QVLGYI 602 (803)
Q Consensus 597 ~V~~~p 602 (803)
.|...+
T Consensus 794 ~~~~~~ 799 (873)
T KOG4194|consen 794 LVYQKK 799 (873)
T ss_pred EEeecC
Confidence 765543
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=204.27 Aligned_cols=571 Identities=17% Similarity=0.122 Sum_probs=335.1
Q ss_pred EEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceee
Q psy2776 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTR 132 (803)
Q Consensus 53 ~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~ 132 (803)
....|..|.|.|.....++...+..|...... .-++.......|...+...+.-+.|.|++.|..|. .+....
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~--~~~~~~ 90 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGE-----HGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM--PSRCPM 90 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCccc-----ccccccccCCceeeecchhhhhhhhhhhhcccccC--ceecce
Confidence 45579999999997544332222211111111 12223334677888888899999999999988443 111111
Q ss_pred EEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEEC--ccCCCeeEEEEcCeeccce---eEE-----Ee---cCeeEE
Q psy2776 133 YVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS--GVPTPDIKWYKDDSLIKGR---NIT-----YE---NNVARF 199 (803)
Q Consensus 133 ~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~--g~p~p~i~W~~~~~~~~~~---~~~-----~~---~~~~~L 199 (803)
.+.. ..+|.-...........+..+.+.|... +.|.+.+.|..+....... ... .. .....|
T Consensus 91 ~l~v-----~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l 165 (741)
T KOG3515|consen 91 ILDV-----DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLL 165 (741)
T ss_pred eecc-----ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccce
Confidence 1111 2333333334445556788999999765 5778889999887643211 000 00 123568
Q ss_pred EEecCCCCcceEEEEEEEcCC---cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeec
Q psy2776 200 TVVNCSESSEGRYTCKATNEA---GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSV 276 (803)
Q Consensus 200 ~i~~v~~~d~G~Y~C~a~n~~---g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (803)
.+...+.+|.|.|+|.|.|.. +.......+.|....
T Consensus 166 ~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~----------------------------------------- 204 (741)
T KOG3515|consen 166 KQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC----------------------------------------- 204 (741)
T ss_pred eeEEEEecCCceeEcccccccCccccccceeEeeccccc-----------------------------------------
Confidence 888889999999999999853 222223333333221
Q ss_pred cccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEE
Q psy2776 277 SKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHII 354 (803)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~ 354 (803)
...........+...+|+.+.|.|.+ ++|.+.+.|+++..++..+....-
T Consensus 205 ----------------------------~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~ 256 (741)
T KOG3515|consen 205 ----------------------------KGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQ 256 (741)
T ss_pred ----------------------------ccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccC
Confidence 00111111222455679999999977 799999999999887765422211
Q ss_pred EEcCc-e-eEEEEeecCCCCCccEEEEEec-------ccc--------------------ceeeeeeecCCCceeeeeee
Q psy2776 355 TSRGT-Q-RKLVIKRVTQDDETDIGVLALN-------VKS--------------------VSKLKWLDFGSGGWWFESKY 405 (803)
Q Consensus 355 ~~~~~-~-~~l~i~~~~~~d~g~y~c~~~~-------~~~--------------------~~~~~~~~~~~~~~~~~~~~ 405 (803)
...+. . +.+.+..-..++.-...|.+.| .+- ...+.|...++++...+.|+
T Consensus 257 ~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~ 336 (741)
T KOG3515|consen 257 EPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWY 336 (741)
T ss_pred CCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccceeccCCCCccceeee
Confidence 22221 2 2222222222334456688887 110 11144555555555555666
Q ss_pred cCcceeeeee-----e--EEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchh
Q psy2776 406 KDDSLIKGRN-----I--TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMK 478 (803)
Q Consensus 406 ~~~~~~~~~~-----~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 478 (803)
++.....+.. . ........+.+......|.|.|+|.+.+..+....++
T Consensus 337 ~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss------------------------- 391 (741)
T KOG3515|consen 337 KDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSS------------------------- 391 (741)
T ss_pred ccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccccccccc-------------------------
Confidence 6555444321 1 1122345566777888999999999999885555433
Q ss_pred hhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCCCcEEE
Q psy2776 479 RVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDSKACRI 557 (803)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~~~~~~ 557 (803)
.+.+.+..+|.+-.... ......+++.....-.+.++|. +.+.|.+++.++..-....+
T Consensus 392 ---------------~~~l~~l~~p~~L~~~~-----~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~ 451 (741)
T KOG3515|consen 392 ---------------SFLLPVLPSPAFLVRHK-----TAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVV 451 (741)
T ss_pred ---------------ceeccccCCchhhhhcc-----cceeeccCccccccCcccCCCcccchhheecceecccccCceE
Confidence 45556666665432221 2233444554444444446665 68999999988876655444
Q ss_pred EecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE------------------------eEeeecccccE
Q psy2776 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI------------------------IQQQEKNSLKF 613 (803)
Q Consensus 558 ~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p------------------------~~~~~~~~~~w 613 (803)
..-.....+.+.++...|.|.|.|.|+|..|.+...+.+.+...| -.........|
T Consensus 452 ~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~ 531 (741)
T KOG3515|consen 452 RVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHE 531 (741)
T ss_pred EeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcc
Confidence 433344555577899999999999999999999888888887766 11122334556
Q ss_pred EEeeeeCC-------------ccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccc
Q psy2776 614 TKVATLDP-------------STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFE 680 (803)
Q Consensus 614 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~ 680 (803)
.+..+... ....+.+.....--+|.+.|.+.| .+.. +....+-. .. .++.......
T Consensus 532 ~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~p--A~~~~~l~-~~-------s~~~v~~~tp 600 (741)
T KOG3515|consen 532 PRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPP--AGLSLVLK-AY-------SALIVTVRTP 600 (741)
T ss_pred cccCCCCcccccccccccccCCccceeecccccccccceEEeecC-CCCc--cccceEEE-ec-------ccccccccCC
Confidence 66654331 223445555556667888888887 3322 21111111 11 1222222222
Q ss_pred ee-EEecC-CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-----CceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 681 EK-TVKEK-GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-----GENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 681 ~~-~v~~g-~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+ +..+| ..++..|.+.|.|.+.++|-|+......+.++..... +....+.+..+ -..|.+ ..|.+.|.+|
T Consensus 601 ~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~y~-~~c~t~n~lg 678 (741)
T KOG3515|consen 601 NMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHI-DGSDYE-NGCTTQNLLG 678 (741)
T ss_pred ceeeeccCcccccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCc-chhhhc-ceeeecccCC
Confidence 22 22222 2889999999999999999998777555555433321 22334555555 456666 9999999999
Q ss_pred ceeeeEEEE
Q psy2776 754 SATHGARVT 762 (803)
Q Consensus 754 ~~~~~~~l~ 762 (803)
.+..+..+.
T Consensus 679 ~~~v~~~~~ 687 (741)
T KOG3515|consen 679 SDHVSGAIH 687 (741)
T ss_pred Cccccceec
Confidence 988666544
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=171.19 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=119.8
Q ss_pred ceEEeecceeEEEEEEcCcC-----------CCeeEEeeCCeee--cCC-Cc---EEEEe---cCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----------RPEISWMKNGAEI--TDS-KA---CRIFI---DEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----------~~~v~W~~~g~~i--~~~-~~---~~~~~---~~~~~~L~i~~v~~~ds 576 (803)
...+.+|+++.|.|.+.+.| .+++.|+|++... ... .+ ..+.. ...+..|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 57789999999999987754 3489999987542 111 11 00010 11246899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
|.|+|+|.|..|....++.|.|...
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~------------------------------------------------------- 135 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSG------------------------------------------------------- 135 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecC-------------------------------------------------------
Confidence 9999999999888888888777321
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEe-----ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEE
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-----ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-----g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~ 731 (803)
+ ....+.+|+.+.|.|.+. |.|.|.+.|+|||.+|..+.++.+..++ .+|.
T Consensus 136 ----------------~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~--~~L~ 191 (227)
T PHA02826 136 ----------------T------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNN--STLV 191 (227)
T ss_pred ----------------C------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCC--CEEE
Confidence 1 123467799999999986 3467899999999999877776554333 4799
Q ss_pred EecCCCCCCceeEEEEEEccCcce
Q psy2776 732 LKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
|.++ +.+|+|.|+|.|+...+..
T Consensus 192 I~~V-~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 192 IKSA-THDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred ECcC-CHHhCEEEEEEEEEeECCE
Confidence 9999 7999999999999976444
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=159.72 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=60.8
Q ss_pred cCeeeecCCcEEEEEEECccC-----------CCeeEEEEcCeec--cc--ee--------EEEecCeeEEEEecCCCCc
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP-----------TPDIKWYKDDSLI--KG--RN--------ITYENNVARFTVVNCSESS 208 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p-----------~p~i~W~~~~~~~--~~--~~--------~~~~~~~~~L~i~~v~~~d 208 (803)
....+.+|+++.|.|.+.+.| .+.+.|+|++... .. .+ .........|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999987644 3479999987642 10 10 1112234689999999999
Q ss_pred ceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 209 EGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
+|.|+|.|.|..+..+.++.|.|.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~ 133 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFD 133 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEe
Confidence 999999999988887777777773
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=138.68 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=86.1
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.|...+....+..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+.++.+......+.|.|.++ ..+|+|.|+|.|+|.+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~-~~~D~G~Ytc~a~N~~ 79 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEG-QQEHCGCYTLEVENKL 79 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCC-ChhhCEEEEEEEEcCC
Confidence 567888889999999999999999999999999999999998888887777777889999999 7999999999999999
Q ss_pred cceeeeEEEEEEeec
Q psy2776 753 GSATHGARVTVDVEK 767 (803)
Q Consensus 753 G~~~~~~~l~V~~~~ 767 (803)
|.+.+++.|.|...+
T Consensus 80 G~~~~~~~l~V~~~P 94 (98)
T cd05762 80 GSRQAQVNLTVVDKP 94 (98)
T ss_pred CceeEEEEEEEecCC
Confidence 999999999996544
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=175.68 Aligned_cols=455 Identities=15% Similarity=0.148 Sum_probs=270.0
Q ss_pred eeecCCcEEEEEEECccCC-CeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEEEEe
Q psy2776 155 VAGFQSSVTLECVVSGVPT-PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232 (803)
Q Consensus 155 ~v~~G~~~~L~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~ 232 (803)
-+..|+.|.|.|.+.++|+ +.+.|++.+..+....... ...+|.........-+.|.|++.|+.+.... ...+.|.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~ 95 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATI--ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVD 95 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccccccccc--cCCceeeecchhhhhhhhhhhhcccccCceecceeeccc
Confidence 6788999999999997554 5799999987776322222 3357888888999999999999999665443 3445554
Q ss_pred eeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccC
Q psy2776 233 GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKL 312 (803)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (803)
..+.-... .
T Consensus 96 ~~pa~~~~-----------------------------------------------------------------------~ 104 (741)
T KOG3515|consen 96 YPPACLPE-----------------------------------------------------------------------L 104 (741)
T ss_pred cCcccccc-----------------------------------------------------------------------c
Confidence 44210000 0
Q ss_pred CceeeeccccceeEEEEe---cCCceeeEEeecCeeccccce-eEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL---SSPDIQVKWLKKGKEIKESAR-HIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~---~~p~~~i~W~~~g~~l~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
-+.. ...+..+.+.|.+ +.|.+.+.|..++.-...... ......+.
T Consensus 105 ~e~~-~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a----------------------------- 154 (741)
T KOG3515|consen 105 GEIF-QVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGA----------------------------- 154 (741)
T ss_pred cchh-hhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccc-----------------------------
Confidence 0001 1236778899965 688999999998665443211 00000000
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
+. ........|.+.....++.|+|+|.|.+..........
T Consensus 155 ----------------------~g----ss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~-------------- 194 (741)
T KOG3515|consen 155 ----------------------LG----SSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAK-------------- 194 (741)
T ss_pred ----------------------cC----ceeccccceeeEEEEecCCceeEcccccccCccccccc--------------
Confidence 00 00011234777778899999999999996433333210
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCe
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGA 547 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~ 547 (803)
...+.+..+.....+.- ....+.+.+|+.+.|.|.+. |+|.+.++|+++..
T Consensus 195 -------------------------~~~i~v~~~~~~~~~~~---~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~ 246 (741)
T KOG3515|consen 195 -------------------------QLTIIVEAPCKGIGITG---AQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSR 246 (741)
T ss_pred -------------------------eeEeecccccccceecc---hhhcCcccccceEEEEehhhcCCcchhhhhccccc
Confidence 23333333332221111 11236678899999999854 57889999999887
Q ss_pred eecCCCcEEEEecCC--eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE-----------------------
Q psy2776 548 EITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI----------------------- 602 (803)
Q Consensus 548 ~i~~~~~~~~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p----------------------- 602 (803)
.+..+....-...++ .+++.+..-..++.-...|.+.| .+. .+..+.+..++
T Consensus 247 ~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~ 323 (741)
T KOG3515|consen 247 PQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCV 323 (741)
T ss_pred cchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeecccccccccccCccccccccccccccee
Confidence 665531111111111 13344444344445567799998 111 11222222222
Q ss_pred -eEeeecccccEEEeeeeC---------------CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccC
Q psy2776 603 -IQQQEKNSLKFTKVATLD---------------PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL 666 (803)
Q Consensus 603 -~~~~~~~~~~w~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~ 666 (803)
....+.....|++....- .......+......+.+.|.|.|-|..+....+....+..
T Consensus 324 ~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~------ 397 (741)
T KOG3515|consen 324 SSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPV------ 397 (741)
T ss_pred ccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccc------
Confidence 444555666777744221 1234566778889999999999999885554444333322
Q ss_pred CCCCCCCeeEec-cceeEEecCCeEEEEEEEeecCC-CceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 667 GSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 667 ~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
.+ +|.|+.. .......+++.+...-.+.|.|. +.+.|.+.+-.+..........-.....+.+.++ ...|.|.|
T Consensus 398 --l~-~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v-~~~d~g~y 473 (741)
T KOG3515|consen 398 --LP-SPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNV-SRSDGGSY 473 (741)
T ss_pred --cC-CchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeecccccccccee-eeccCCcc
Confidence 22 3344433 33344445554444444446654 5899999998887665543333333345667778 78999999
Q ss_pred EEEEEccCcceeeeEEEEEEeeccCCCCCccc-------CCccceeeeeeeeEEEecccc
Q psy2776 745 KVVATNELGSATHGARVTVDVEKVGRPSINSI-------DIDLNHVHYLAQSTEVDVTST 797 (803)
Q Consensus 745 ~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 797 (803)
.|.|.|..|.+...+.+.++ .-|.+... +.+.....|-.++.|.|...-
T Consensus 474 ~~tatns~gg~~~~~~~~~~----~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~ 529 (741)
T KOG3515|consen 474 GLTATNSPGGAQAYLLLGVH----TSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMH 529 (741)
T ss_pred eeeeccCCCceeeEEeeccc----cCCcccccccccccCCCCcccceeeccccccchhhh
Confidence 99999999999887776664 22222222 222346788888888776543
|
|
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=125.83 Aligned_cols=90 Identities=23% Similarity=0.410 Sum_probs=82.6
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
||.|+..+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+......+.|.|.++ ..+|+|.|+|.|.|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKV-QMSDEGNYTVVVENS 81 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCC-CcccCEeEEEEEEcC
Confidence 7889999999999999999999999999999999999999998888887776666789999999 789999999999999
Q ss_pred CcceeeeEEEE
Q psy2776 752 LGSATHGARVT 762 (803)
Q Consensus 752 ~G~~~~~~~l~ 762 (803)
+|..+.++.|+
T Consensus 82 ~G~~~~~~~l~ 92 (92)
T cd05747 82 EGKQEAQFTLT 92 (92)
T ss_pred CCCEeEEEEeC
Confidence 99999888763
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=125.55 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=76.7
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++.++....++ ...+ ..|.|.++ +.+|+|.|+|.|.|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~--~~L~I~~v-~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMSG--AVLKIFNI-QPEDEGTYECEAENI 75 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecCC--CEEEECcC-ChhhCEEEEEEEEcC
Confidence 578888899999999999999999999999999999999888655433 2233 37999999 799999999999999
Q ss_pred CcceeeeEEEEEE
Q psy2776 752 LGSATHGARVTVD 764 (803)
Q Consensus 752 ~G~~~~~~~l~V~ 764 (803)
+|.+...+.|.|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd05851 76 KGKDKHQARVYVQ 88 (88)
T ss_pred CCceEEEEEEEEC
Confidence 9999999998873
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-15 Score=125.11 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=80.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+..|+.+.|.|.+.|.|++.+.|+|+|..|..+.++.+......+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 36788999999999999999999999999999998877888777777899999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|.+.|
T Consensus 88 l~V~~~P 94 (98)
T cd05762 88 LTVVDKP 94 (98)
T ss_pred EEEecCC
Confidence 9998876
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-15 Score=123.78 Aligned_cols=90 Identities=36% Similarity=0.630 Sum_probs=85.7
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.|...+....+.+|+++.|.|.+.|.|.+.+.|+++|.++..+.++.+..++..+.|.|.++ +.+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNV-TREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSE-SGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCC-ChhhCEEEEEEEEECC
Confidence 678888899999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred cceeeeEEEEE
Q psy2776 753 GSATHGARVTV 763 (803)
Q Consensus 753 G~~~~~~~l~V 763 (803)
|..++.+.|.|
T Consensus 80 g~~~~~~~l~V 90 (90)
T PF07679_consen 80 GEATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred CEEEEEEEEEC
Confidence 99999998886
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=120.53 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=72.6
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
.+.+..|+++.|.|.+.|.|.|.+.|++++.++... .++.+........|.|.++ ..+|+|.|+|.|.|.+|++++++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGA-EREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCC-ccCcCEEEEEEEEeCCCcEEEEE
Confidence 467889999999999999999999999999999764 4666666666789999999 79999999999999999999988
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8875
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-15 Score=124.24 Aligned_cols=85 Identities=25% Similarity=0.326 Sum_probs=73.0
Q ss_pred ceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEeeC-----ceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 680 EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
....+.+|+.+.|.|.+.| .|+|.+.|+|+|.+|.......+.... ...+|.|.++ ..+|+|.|+|.|+|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRL-KESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeec-CHhhCeeEEEEEECCCc
Confidence 3578999999999999999 899999999999999866555444332 2468999999 89999999999999999
Q ss_pred ceeeeEEEEEEe
Q psy2776 754 SATHGARVTVDV 765 (803)
Q Consensus 754 ~~~~~~~l~V~~ 765 (803)
.++..+.|.|.|
T Consensus 90 ~~~~t~~L~V~v 101 (101)
T cd04975 90 SKSLTFELYVNV 101 (101)
T ss_pred cEEEEEEEEEEC
Confidence 999999999864
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=122.37 Aligned_cols=83 Identities=29% Similarity=0.489 Sum_probs=73.7
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
....+.+|+++.|.|.+.|.|.|.+.|+|+|.++..+.++.+..+ +....|.|.++ +.+|+|.|+|.|.|.+|.++..
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGV-SSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccC-ChhhCEEEEEEEEECCCcceEE
Confidence 346889999999999999999999999999999988888777654 45678999999 7899999999999999999988
Q ss_pred EEEEE
Q psy2776 759 ARVTV 763 (803)
Q Consensus 759 ~~l~V 763 (803)
+.|.|
T Consensus 88 ~~v~v 92 (92)
T cd05737 88 VTVSV 92 (92)
T ss_pred EEEeC
Confidence 87765
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=115.96 Aligned_cols=73 Identities=27% Similarity=0.462 Sum_probs=65.8
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+++.|.|.+.|.|.|.+.|+|++..+..+.++.+..++ .|.|.++ +.+|+|.|.|.|+|.+|+++.++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v-~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNI-TKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcC-ChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 789999999999999999999999998888787765443 5999999 799999999999999999999998875
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=115.48 Aligned_cols=73 Identities=36% Similarity=0.520 Sum_probs=63.0
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeC-ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDG-ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|.+|.. +.++.+..++ ...+|.|.++ +.+|+|.|+|.|.|.+|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~-~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNV-NKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCC-ChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999974 3566665543 3458999999 799999999999999999999999875
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=118.27 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=68.5
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEe--e--CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIF--D--GENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~--~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
|+.++|.|.+.|.|++.+.|++++.++..+ .++.+.. . ...++|.|.++ ..+|+|.|+|.|.|.+|.++..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~-~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPT-VREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCC-CcccCEEEEEEEEcCCCcceEEEEE
Confidence 789999999999999999999999988654 3554443 1 22367999999 7899999999999999999999999
Q ss_pred EEEeeccC
Q psy2776 762 TVDVEKVG 769 (803)
Q Consensus 762 ~V~~~~~~ 769 (803)
.|..+|.+
T Consensus 80 ~V~~~P~~ 87 (88)
T cd05735 80 TVQEPPDP 87 (88)
T ss_pred EEeCCCCC
Confidence 99754433
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=118.91 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=72.7
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.............|.|.++ ..+|.|.|+|.|.|.+|++.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNI-TSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecC-CcccCEEEEEEEECCCCcee
Confidence 34556678999999999999999999999999999887655433333445678999999 78999999999999999999
Q ss_pred eeEEEEE
Q psy2776 757 HGARVTV 763 (803)
Q Consensus 757 ~~~~l~V 763 (803)
+++.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 9988875
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-14 Score=119.74 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=74.5
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-----CCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-----PKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.|+|...+....+..|+.++|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++ +.+|+|.|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v-~~~D~G~Y~C 80 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYI-QYTDAGEYLC 80 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecC-ccCcCEEEEE
Confidence 567766666666667899999999999999999999998877533 2333344445578999999 7899999999
Q ss_pred EEEccCcceeeeEEEEE
Q psy2776 747 VATNELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+|.++.++.|.|
T Consensus 81 ~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 81 TASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEecCCCCeeEEEEEEC
Confidence 99999999999998875
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=115.17 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=64.9
Q ss_pred cCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+|+++.|.|.+.|.|.|.+.|+|+|..+..+.++.+... .+|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v-~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRV-ALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeC-CHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 589999999999999999999999999877666544322 37999999 799999999999999999999988875
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=120.09 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=71.4
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee------CceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD------GENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~------~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..++..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+.+...... ...++|.|.++ ..+|+|.|+|.|.|.+|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v-~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRA-KEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeC-CHHHCEEEEEEEEcCCce
Confidence 46788899999999999999999999999999987665433221 12368999999 799999999999999999
Q ss_pred eeeeEEEEEEe
Q psy2776 755 ATHGARVTVDV 765 (803)
Q Consensus 755 ~~~~~~l~V~~ 765 (803)
.+.++.|.|.|
T Consensus 91 ~~~t~~l~V~v 101 (101)
T cd05859 91 KSYTFALQIQV 101 (101)
T ss_pred EEEEEEEEEEC
Confidence 99999999863
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=112.94 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=67.4
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.+.|.|.+.|.|.|.+.|+|+|.++..+.++.+........|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNA-ERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCC-CcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999998888887777777889999999 799999999999999999999888875
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-14 Score=119.26 Aligned_cols=90 Identities=21% Similarity=0.395 Sum_probs=73.3
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--CeeccC-----CCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLLS-----SPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
+|+|.. +.+..+.+|++++|.|.+.|.|.|.+.|+++ +..+.. +.++.+........|.|.++ +.+|+|.|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v-~~~D~G~Y 79 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDV-KLSDSGRY 79 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeC-CcCCCEEE
Confidence 577754 6688999999999999999999999999994 444432 23555544445678999999 79999999
Q ss_pred EEEEEccCcceeeeEEEEE
Q psy2776 745 KVVATNELGSATHGARVTV 763 (803)
Q Consensus 745 ~C~a~N~~G~~~~~~~l~V 763 (803)
+|.|.|.+|.+..++.|.|
T Consensus 80 ~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEeccCCcceeEEEEeC
Confidence 9999999999999888865
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=114.90 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=73.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+ .++.+...+..+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467889999999999999999999999999999764 4666666666789999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 875
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-14 Score=116.34 Aligned_cols=88 Identities=30% Similarity=0.425 Sum_probs=75.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
+|.|...+.+..+.+|+.+.|.|.+.|+|.|.+.|+|++..+.... ........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 79 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA-EISMSGAVLKIFNIQPEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC-EEecCCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence 4678888889999999999999999999999999999988775432 222234579999999999999999999999999
Q ss_pred eeEEEEEEe
Q psy2776 224 ETSCTLLVQ 232 (803)
Q Consensus 224 ~~s~~l~V~ 232 (803)
..++.|.|+
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd05851 80 KHQARVYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 999988874
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=118.72 Aligned_cols=82 Identities=17% Similarity=0.337 Sum_probs=69.6
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
+..+..|+++.|.|.+.|.|.|.+.|+++|..+... .++... .....|.|.++ +.+|+|.|+|.|+|.+|.+..++
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDV-DKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCC-ChhhCEEEEEEEEcCCCeEEEEE
Confidence 457889999999999999999999999999998765 333322 23347999999 78999999999999999999999
Q ss_pred EEEEEe
Q psy2776 760 RVTVDV 765 (803)
Q Consensus 760 ~l~V~~ 765 (803)
.|+|.+
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 998853
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-14 Score=112.76 Aligned_cols=73 Identities=34% Similarity=0.506 Sum_probs=62.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeC-ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDG-ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|.|.|.+.|.|.|.+.|+|++.++..+ .++.+..++ ....|.|.++ +.+|+|.|+|.|.|.+|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGA-TKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCC-CHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998754 455554443 3457999999 799999999999999999999998875
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=116.89 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=71.9
Q ss_pred cceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecC-----CeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~-----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+.+.+|+.+.|.|.+.| .|+|.+.|+|+|.+|....+..+.... ..+.|.|.++..+|+|.|+|.|+|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3578899999999999999 888999999999999865544333221 2578999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy2776 590 TSLDLSLQVL 599 (803)
Q Consensus 590 ~s~s~~l~V~ 599 (803)
.+.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=115.82 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=72.7
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|+..|.+..+..|+.+.|.|.+.|.|.|.+.|+++|.++....++.. .+. .|.|.++ ..+|+|.|+|.|.|.+|.
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~--~L~i~~~-~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAG--DLRITKL-SLSDSGMYQCVAENKHGT 76 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCC--EEEEeeC-CHHHCEEEEEEEECCCCe
Confidence 44566778899999999999999999999999999999977666543 233 6999999 789999999999999999
Q ss_pred eeeeEEEEE
Q psy2776 755 ATHGARVTV 763 (803)
Q Consensus 755 ~~~~~~l~V 763 (803)
..+++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 999888875
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-14 Score=116.45 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=73.5
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++ +.+|+|.|.|.|.|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v-~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNI-QFEDEGTYECEAENI 75 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCC-CcccCEEEEEEEEEC
Confidence 4566677778889999999999999999999999999887765543322 22347999999 799999999999999
Q ss_pred CcceeeeEEEEE
Q psy2776 752 LGSATHGARVTV 763 (803)
Q Consensus 752 ~G~~~~~~~l~V 763 (803)
+|..+.++.|.|
T Consensus 76 ~G~~~~~~~l~V 87 (88)
T cd04968 76 KGKDTHQGRIYV 87 (88)
T ss_pred CCcEEEEEEEEE
Confidence 999999999887
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=110.48 Aligned_cols=71 Identities=20% Similarity=0.461 Sum_probs=62.3
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
++.|.|.+.|.|.|.+.|+|+|..+..+.++.+..++. |.|.++ +.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v-~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGL-VKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcC-CcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999988777766655444 778899 799999999999999999999998875
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=116.01 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=73.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+... +....|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 56789999999999999999999999999999987777776654 34568999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 875
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=115.80 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=69.4
Q ss_pred ccceeEEecCCeEEEEEEEeecCC-CceEEee-CCeeccC-CCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccC-
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPA-PSIVWFR-NNKPLLS-SPKKREIFD-GENIILELKEADSETDAGDYKVVATNEL- 752 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~-~~~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~- 752 (803)
.|....+..|+++.|.|.+.|.|. |.+.|++ |+..+.. +.++.+... ....+|.|.++ +.+|+|.|+|.|+|.+
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v-~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNA-NIDDAGIYKCVVSNEDE 84 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEecc-ChhhCEEEEEEEEcCCC
Confidence 445567889999999999999995 7999998 7877765 334444332 33578999999 7999999999999997
Q ss_pred cceeeeEEEEE
Q psy2776 753 GSATHGARVTV 763 (803)
Q Consensus 753 G~~~~~~~l~V 763 (803)
|..++++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 99999998876
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=113.65 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=73.0
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEee-CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..+.+..+.+|+++.|.|.+.|.|. .+.|++ ++.++..+.++.+..++....|.|.++ ..+|+|.|+|.|+|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecC-ChHHCEEEEEEEEcCCCcE
Confidence 3456778999999999999999998 899998 578887778888777777789999999 7999999999999999996
Q ss_pred -eeeEEEEE
Q psy2776 756 -THGARVTV 763 (803)
Q Consensus 756 -~~~~~l~V 763 (803)
..++.|.|
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 66666654
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=117.72 Aligned_cols=90 Identities=26% Similarity=0.371 Sum_probs=74.1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-----CCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-----PKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|+|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++ +.+|+|.|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C 79 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDV-QLTDAGRYDC 79 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcC-CcCcCEEeEE
Confidence 56664 455778899999999999999999999999998776543 2344443445678999999 7999999999
Q ss_pred EEEccCcceeeeEEEEE
Q psy2776 747 VATNELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+|.++.++.|.|
T Consensus 80 ~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 80 EASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEeCCCCcEEEEEEeC
Confidence 99999999999888865
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=112.17 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=69.2
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++ +.+|+|.|+|.|.|.+|.....+.+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDV-KESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCC-ChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 7899999999999999999999999988777877777777789999999 7999999999999999999887777664
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-14 Score=108.31 Aligned_cols=66 Identities=24% Similarity=0.458 Sum_probs=57.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|||.+|... .....|.|.++ ..+|+|.|+|.|+|.+|..++++.|+|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v-~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDV-TEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCC-CHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999998532 23448999999 7999999999999999988888888774
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=110.25 Aligned_cols=73 Identities=29% Similarity=0.459 Sum_probs=62.9
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCC-eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~-~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|+|..|..+ .++.+...+. ..+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999998753 5566554433 358999999999999999999999999999999875
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=113.63 Aligned_cols=87 Identities=22% Similarity=0.447 Sum_probs=67.1
Q ss_pred CeeEeccceeEEe---cCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 673 PLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 673 p~~~~~~~~~~v~---~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|.|+..+.++.+. +|++++|.|.+.|.|.|.+.|+|+|.+|.....+.....+. .|.|.++...+|+|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 6677777776554 47899999999999999999999999997554433333333 588888733589999999999
Q ss_pred ccCcce-eeeEEE
Q psy2776 750 NELGSA-THGARV 761 (803)
Q Consensus 750 N~~G~~-~~~~~l 761 (803)
|.+|.. +..+.|
T Consensus 80 N~~G~~~S~~~~l 92 (94)
T cd05848 80 NSIGSILSREALL 92 (94)
T ss_pred cCCCeEEeccEEE
Confidence 999988 445544
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=109.73 Aligned_cols=73 Identities=37% Similarity=0.522 Sum_probs=62.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|..+..+ .++.+..+ ....+|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNA-NKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCC-CcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998754 45555444 34457999999 799999999999999999999998875
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=115.96 Aligned_cols=91 Identities=26% Similarity=0.483 Sum_probs=71.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-----CCeEEEeeCceEEEEEe--cCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-----PKKREIFDGENIILELK--EADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~~~L~i~--~v~~~~D~G~Y 744 (803)
||.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+... .+.....++....+.|. .+ ..+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK-GRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCC-CcCcCEEE
Confidence 578888888999999999999999999999999999999998751 22222334444444443 23 47999999
Q ss_pred EEEEEccCcc-eeeeEEEEE
Q psy2776 745 KVVATNELGS-ATHGARVTV 763 (803)
Q Consensus 745 ~C~a~N~~G~-~~~~~~l~V 763 (803)
+|.|.|.+|. .++.+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999999 678888776
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=109.97 Aligned_cols=73 Identities=30% Similarity=0.491 Sum_probs=65.2
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..++ .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNV-TKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccC-ChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999999999999999999999999888777654333 5999999 799999999999999999999998875
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=113.28 Aligned_cols=84 Identities=26% Similarity=0.477 Sum_probs=72.2
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
|..+.+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+... +....|.|.++ +.+|+|.|+|.|.|.+|.+.+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGV-TSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCC-ChhhCEEEEEEEEeCCCceee
Confidence 3457889999999999999999999999999999988777665443 33468999999 789999999999999999998
Q ss_pred eEEEEE
Q psy2776 758 GARVTV 763 (803)
Q Consensus 758 ~~~l~V 763 (803)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 887764
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=111.36 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred CeEEEEEEEeecCCC--ceEEeeCCeeccCC---CCeEEE-eeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKREI-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~---~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
++++|.|.+.|.|.| .+.|++||.+|... .++.+. .......|.|.++ +.+|+|.|+|.|.|.+|++++++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNA-QLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccC-ChhhCeEEEEEEecCCCCEEEEEEE
Confidence 478999999999988 58999999998643 243222 2234568999999 7899999999999999999999999
Q ss_pred EEEe
Q psy2776 762 TVDV 765 (803)
Q Consensus 762 ~V~~ 765 (803)
.|.+
T Consensus 80 ~V~~ 83 (85)
T cd05854 80 VVRG 83 (85)
T ss_pred EEEC
Confidence 9975
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=109.59 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=62.3
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+++.|.|.+.|.|.|.|+|+|+|.++..... .....++. .|.|.++ +.+|+|.|.|.|+|.+|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v-~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKV-QERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCC-CHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 68899999999999999999999999864432 12223343 6889999 799999999999999999999999987
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=108.45 Aligned_cols=74 Identities=28% Similarity=0.504 Sum_probs=67.3
Q ss_pred eeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 525 ~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
.+.|.|.+.|.|.|.+.|+|+|..+..+.+..+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999999997777777776677889999999999999999999999999999998875
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=110.19 Aligned_cols=74 Identities=24% Similarity=0.411 Sum_probs=65.0
Q ss_pred ecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+|+.+.|.|.+.|.|.|.+.|+|+|..+....+..+. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5899999999999999999999999988765554432 2458999999999999999999999999999998875
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.5e-13 Score=111.68 Aligned_cols=83 Identities=31% Similarity=0.514 Sum_probs=78.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+++.|.|.+.|.|.+.+.|+++|..+..+.++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 87 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVN 87 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence 47889999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 88 l~V 90 (90)
T PF07679_consen 88 LTV 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 876
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=108.80 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=64.9
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+.. +++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999999887776666533 357999999999999999999999999999998875
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=108.06 Aligned_cols=74 Identities=28% Similarity=0.408 Sum_probs=62.1
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|+++|.++...... ..... ...|.|.++ +.+|+|.|.|.|.|.+|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDV-QPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCC-ChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999988754321 12222 236999999 799999999999999999999988887
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.9e-13 Score=111.48 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=66.4
Q ss_pred CeeEeccceeEEecC---CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 673 PLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 673 p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|.|...+....+.+| +++.|.|.+.|.|.|.+.|++||.++...........++ .|.|.++...+|+|.|.|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence 567777777766665 589999999999999999999999986443222222233 588887634689999999999
Q ss_pred ccCccee-eeEEEE
Q psy2776 750 NELGSAT-HGARVT 762 (803)
Q Consensus 750 N~~G~~~-~~~~l~ 762 (803)
|.+|... +.+.|.
T Consensus 80 N~~G~~~s~~a~l~ 93 (94)
T cd05850 80 NRCGTVVSREANLR 93 (94)
T ss_pred cCcCcEEEEEEEEe
Confidence 9999884 455543
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=111.02 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=68.1
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeE-EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+.. .........|.|.++ ..+|+|.|+|.|.|.+|+...++.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~-~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccC-CcccCEEEEEEEEeCCCEEEEEEE
Confidence 457889999999999999999999999999997665432 122234557999999 789999999999999999999988
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 875
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=113.05 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=70.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec------CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID------EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~------~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
...+..|+.+.|.|.+.|+|+|.+.|+|+|.+|..+.+...... ...++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 46678899999999999999999999999999986654322211 224689999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy2776 591 SLDLSLQVL 599 (803)
Q Consensus 591 s~s~~l~V~ 599 (803)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999885
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=107.48 Aligned_cols=73 Identities=29% Similarity=0.452 Sum_probs=62.2
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCe-EEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEET-STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~-~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|++..+..+ .++.+.....+ ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988754 45555444322 47999999999999999999999999999999875
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=109.73 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=62.2
Q ss_pred CeEEEEEEEeec--CCCceEEeeCCeeccC--CC-CeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVKAS--PAPSIVWFRNNKPLLS--SP-KKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~g~--p~~~v~W~~~~~~l~~--~~-~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
+++.|.|.+.+. +++.|.|+|||.+|.. .. ++.+... .....|.|.++ +.+|+|+|+|.|+|.+++.++++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv-~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSI-QLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecC-CHHHCEEEEEEEEcccCceEEEEEE
Confidence 468999999774 5778999999999963 22 3333211 12347999999 8999999999999999999999999
Q ss_pred EEEee
Q psy2776 762 TVDVE 766 (803)
Q Consensus 762 ~V~~~ 766 (803)
.|++|
T Consensus 80 ~V~~p 84 (85)
T cd05853 80 IVRGP 84 (85)
T ss_pred EEecC
Confidence 99764
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=110.51 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=70.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+++|..+..............+.|.|.++..+|.|.|+|.|.|..|....++.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 45688999999999999999999999999998866544333333456799999999999999999999999999999988
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 75
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-13 Score=107.94 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=60.1
Q ss_pred EEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-------CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 691 ~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+.|.|.|.++|+|||.+|..+.+...... .....|.|.++ +.+|+|.|+|+|+|.+|.+++++.|..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNP-THVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCC-CcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 3789999999999999999999987765433221 23567999999 789999999999999999998887764
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-13 Score=108.39 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=63.6
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|+++|.++...... .........|.|.++ +.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNV-QPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCC-ChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999998765543 112233357999999 789999999999999999999998887
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-13 Score=105.98 Aligned_cols=69 Identities=23% Similarity=0.449 Sum_probs=58.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|||.+|....++ .. ...|.|.++ ..+|+|.|+|.|.|.+|+.+....++|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~---~~--~~~L~I~~v-~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF---KR--GVHLTIYEV-TEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE---cc--CCEEEECcC-CHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 468999999999999999999999765332 12 236999999 7999999999999999998887777764
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=110.39 Aligned_cols=81 Identities=28% Similarity=0.423 Sum_probs=73.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 11 ~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 90 (92)
T cd05747 11 RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT 90 (92)
T ss_pred ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence 36789999999999999999999999999999988777777776666789999999999999999999999999888877
Q ss_pred E
Q psy2776 596 L 596 (803)
Q Consensus 596 l 596 (803)
|
T Consensus 91 l 91 (92)
T cd05747 91 L 91 (92)
T ss_pred e
Confidence 6
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=110.38 Aligned_cols=88 Identities=24% Similarity=0.416 Sum_probs=65.6
Q ss_pred CCeeEeccceeEEec---CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~---g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+|.|...+....+.+ |+.+.|.|.+.|.|.|.++|+|++.++......... .+ ..|.|.++...+|+|.|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~--g~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VG--GNLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-EC--CEEEECcCCcCCCCEEEEEEE
Confidence 366777666665554 448999999999999999999999988643332222 23 368898873358999999999
Q ss_pred EccCcce-eeeEEEE
Q psy2776 749 TNELGSA-THGARVT 762 (803)
Q Consensus 749 ~N~~G~~-~~~~~l~ 762 (803)
+|.+|.. ++.+.|.
T Consensus 78 ~N~~G~~~s~~a~l~ 92 (93)
T cd05849 78 SNIYGKVRSREATLS 92 (93)
T ss_pred EeCcceEEEccEEEe
Confidence 9999998 4455553
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-13 Score=105.86 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=59.3
Q ss_pred EEEEEEeecCCCceEEeeCCeeccCCCCeEE--Ee-e--CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--IF-D--GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 691 ~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~--~~-~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+.|.|.|.++|+|||.+|..+.+... .. . .....|.|.++ ..+|+|.|+|+|+|.+|++++++.+..
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNP-THLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCC-CcccCEEEEEEEEcCCcccceEEEeec
Confidence 3789999999999999999999987665422 11 1 23468999999 789999999999999999998887753
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=111.71 Aligned_cols=82 Identities=26% Similarity=0.492 Sum_probs=70.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+..|+.+.|.|.+.|.|.|.+.|+|+|..+... .++ .....++.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKY--SFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEE--EEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 457889999999999999999999999999988765 333 33345568999999999999999999999999999999
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 98864
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=113.09 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCeeEeccceeE-E---ecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEee----CceEEEEEecCCC-CCCc
Q psy2776 672 APLFIERFEEKT-V---KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD----GENIILELKEADS-ETDA 741 (803)
Q Consensus 672 ~p~~~~~~~~~~-v---~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~----~~~~~L~i~~v~~-~~D~ 741 (803)
+|.|...+.... + ..|+++.|.|.+.|.|.|.+.|+++|..|... .++.+... ....+|.|.++ . .+|.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v-~~~~D~ 82 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINV-SAALDY 82 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcC-CccCCC
Confidence 556655554222 2 24679999999999999999999999998743 45543321 12468999998 5 5899
Q ss_pred eeEEEEEEccCcceeeeEEEEEE
Q psy2776 742 GDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 742 G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|+|.|.|.+|.++..+.|.|.
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEec
Confidence 99999999999999999999884
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-13 Score=106.27 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
|.|.|.+.|.|.|.+.|+|+|.++..+.++.+..+ ..|.|.++ ..+|+|.|+|.|.|.+|.++.++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDV-GVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcC-ChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 57999999999999999999999987777655432 36999999 78999999999999999999888763
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=105.98 Aligned_cols=73 Identities=26% Similarity=0.490 Sum_probs=58.9
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
++|.|.+.|.|.|.+.|+|+|.++..+.. +.+. .....|.|.++ +.+|+|.|.|.|.|.+|....+..++|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSA-GPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeC-CcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 57999999999999999999999876543 3332 22347999999 79999999999999999986666666654
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=105.20 Aligned_cols=73 Identities=29% Similarity=0.450 Sum_probs=62.5
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecC-CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~-~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|+|..+... .++.+.... +...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998753 455554443 3458999999999999999999999999999998875
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=109.62 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=67.5
Q ss_pred ceEEeecceeEEEEEEcCcCC-CeeEEee-CCeeecC-CCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCC-CCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-PEISWMK-NGAEITD-SKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAA-GSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~~v~W~~-~g~~i~~-~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g~~s 591 (803)
...+.+|+++.|.|.+.|.|. |.++|++ +|..+.. +.++.+... ...++|.|.++..+|+|.|+|.|.|.. |...
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 456888999999999999995 7999998 7876655 344444332 235799999999999999999999996 8899
Q ss_pred EEEEEEE
Q psy2776 592 LDLSLQV 598 (803)
Q Consensus 592 ~s~~l~V 598 (803)
.++.|.|
T Consensus 89 ~s~~l~v 95 (96)
T cd05865 89 ATVNVKI 95 (96)
T ss_pred EEEEEEE
Confidence 9998876
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=108.55 Aligned_cols=88 Identities=32% Similarity=0.425 Sum_probs=72.5
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+...... ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI-SMSGAVLKIPNIQFEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE-EEeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence 345556677888899999999999999999999999988765433211 1344689999999999999999999999999
Q ss_pred eeEEEEEEe
Q psy2776 224 ETSCTLLVQ 232 (803)
Q Consensus 224 ~~s~~l~V~ 232 (803)
..++.|.|.
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd04968 80 THQGRIYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 888888773
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=108.14 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=68.3
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEec--CC--eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFID--EE--TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~--~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
|+.+.|.|.+.|.|++.+.|+|++..+... .++.+... +. .++|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999988654 35544431 12 36899999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 98765
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-13 Score=102.92 Aligned_cols=66 Identities=30% Similarity=0.520 Sum_probs=57.6
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.|.|.+.|.|.|.+.|+|+|+.|... ...+.|.|.++..+|+|.|+|.|+|..|..+.++.|.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999988632 235799999999999999999999999988888777663
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=110.07 Aligned_cols=88 Identities=22% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCC--CCeEEEee----CceEEEEEecCCCC-CCcee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSE-TDAGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~-~D~G~ 743 (803)
||.+. .+....+.+|+++.|.|.+.|.|.| .+.|++++.++... .++.+... +..++|.|.++ .. +|.|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v-~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNT-QESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCc-ccccccee
Confidence 56664 4456778999999999999999999 59999999988754 46665543 23468999999 56 55899
Q ss_pred EEEEEEccCcceeeeEEE
Q psy2776 744 YKVVATNELGSATHGARV 761 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l 761 (803)
|.|.|.|.+|.+.+.+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999888776
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=107.02 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=65.5
Q ss_pred ceeEEEEEEcCcCCC--eeEEeeCCeeecCC---CcEE-EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 524 SQWKVEVKYFGFPRP--EISWMKNGAEITDS---KACR-IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 524 ~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~---~~~~-~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
+++.|.|.+.|.|.| .+.|+++|..|... .++. +......+.|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999999987 57999999988643 2332 22233457999999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|.++|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=110.73 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=67.9
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEee--CCeeecCC-----CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEITDS-----KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~~~-----~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+| ++..+... .++.+........|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 36788999999999999999999999999 44444321 244443333457899999999999999999999999
Q ss_pred CeEEEEEEEE
Q psy2776 589 STSLDLSLQV 598 (803)
Q Consensus 589 ~~s~s~~l~V 598 (803)
....++.|.|
T Consensus 89 ~~~~~~~l~~ 98 (98)
T cd05870 89 GHQKSMYLDI 98 (98)
T ss_pred cceeEEEEeC
Confidence 9999988865
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-13 Score=105.35 Aligned_cols=70 Identities=33% Similarity=0.524 Sum_probs=58.5
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|++.++..+. .... ....+|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNV-LESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEccc-CHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4699999999999999999998775542 2222 23457999999 789999999999999999999988887
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=108.30 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=62.7
Q ss_pred CeEEEEEEEeecCCC--ceEEeeCCeeccCCC---CeE-EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVKASPAP--SIVWFRNNKPLLSSP---KKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~---~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
+.+.|.|.+.|.|.| .+.|+++|.+|.... ++. .........|.|.++ +.+|+|.|+|.|.|.+|..++++.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNA-QLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccC-CHHhCeeeEEEEecCCCcEEEEEEE
Confidence 468999999999988 579999999986432 222 222234567999999 7999999999999999999999999
Q ss_pred EEEe
Q psy2776 762 TVDV 765 (803)
Q Consensus 762 ~V~~ 765 (803)
.|.+
T Consensus 80 ~V~~ 83 (85)
T cd04970 80 IVRG 83 (85)
T ss_pred EEEC
Confidence 9975
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=105.77 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=67.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+++.|.|.+.|.|.|.+.|++++..+....++.+....+.+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6889999999999999999999999888777777666666789999999999999999999999999877766654
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=105.44 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=63.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|+.+.|.|.+.|.|.|+++|+|+|+++.......... .++..|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~-~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK-VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE-ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 6789999999999999999999999986542211111 133579999999999999999999999999999999873
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=104.22 Aligned_cols=70 Identities=34% Similarity=0.553 Sum_probs=59.7
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|+|.++..+.++. . ...+|.|.++ +.+|+|.|+|.|.|.+|..+.++.++|-
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~--~~~~L~I~~v-~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--K--SGHSLTIKDV-TEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--c--CCCEEEECcC-CHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4699999999999999999999997764332 2 2347999999 7999999999999999999888888774
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=107.73 Aligned_cols=79 Identities=24% Similarity=0.406 Sum_probs=69.6
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+. +..|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 3577899999999999999999999999999998776555432 357999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 875
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=109.21 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=65.6
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeec--------cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
|+.+.|.|.+.|.|.|.+.|+++|..+ ....++.+..+ ..|.|.++ +.+|+|.|.|.|.|.+|.....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNV-QRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeC-ChhhCEEEEEEEEcCCCceEEE
Confidence 789999999999999999999987643 12334443322 36999999 7999999999999999999999
Q ss_pred EEEEEEeeccCCC
Q psy2776 759 ARVTVDVEKVGRP 771 (803)
Q Consensus 759 ~~l~V~~~~~~pp 771 (803)
+.|.|......+|
T Consensus 77 ~~l~V~~~~~~~~ 89 (90)
T cd05726 77 AYLEVTDVIADRP 89 (90)
T ss_pred EEEEEeecccCCC
Confidence 9999986555543
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=106.56 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=69.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee-CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~ 594 (803)
...+.+|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+...+..+.|.|.++..+|+|.|+|.|+|..|.. ..++
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 577899999999999999998 899998 5777777677776665566799999999999999999999999985 6666
Q ss_pred EEEE
Q psy2776 595 SLQV 598 (803)
Q Consensus 595 ~l~V 598 (803)
.|.|
T Consensus 88 ~l~~ 91 (92)
T cd05866 88 VLEI 91 (92)
T ss_pred EEEE
Confidence 6654
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=103.52 Aligned_cols=71 Identities=24% Similarity=0.447 Sum_probs=61.7
Q ss_pred eeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 525 ~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
.+.|.|.+.|.|.|.++|+|+|..+..+.++.+.. ...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~---~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK---EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe---cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 37899999999999999999999887766665543 245888999999999999999999999999998875
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=101.83 Aligned_cols=69 Identities=25% Similarity=0.448 Sum_probs=57.4
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
|+.+.|.|.+.|.|.|.|.|+|++.++....++.. ....|.|.++ .|+|.|+|.|.|.+|...+++.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~---~d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI---YESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc---ccCeeEEEEEEeCCCEEEEEEEEC
Confidence 68899999999999999999999998866544321 2347999987 479999999999999998888763
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=107.62 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=65.6
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THG 758 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~ 758 (803)
.++.+.+|++++|.|.+.|. .|.+.|++++..+... ++.+.. ...+|.|.++ +.+|+|.|.|.|.|.+|.. +..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~--~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSN--DNRTLTFNNV-TRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeC--CCCEEEECcC-ChhhCEEEEEEEEcCCCCEEeee
Confidence 35688999999999999999 9999999999987543 443333 3347999999 7999999999999999986 567
Q ss_pred EEEEE
Q psy2776 759 ARVTV 763 (803)
Q Consensus 759 ~~l~V 763 (803)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 77776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=104.18 Aligned_cols=74 Identities=24% Similarity=0.445 Sum_probs=63.0
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.++|+|+|..+...... +... ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 688999999999999999999999988764321 2222 2457999999999999999999999999999999887
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=105.51 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=65.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
....+.+|+.+.|.|.+.|. .+.+.|+|+|.+|..+.++.+. +. .|.|.++ +.+|+|.|+|.|.|..|.+...+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~-~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDA-VPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCC-ChhhCEEEEEEEeCCCCcccEEE
Confidence 34678899999999999986 5689999999999877766543 33 7999999 78999999999999999988877
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 6654
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=106.42 Aligned_cols=81 Identities=25% Similarity=0.401 Sum_probs=68.5
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEE-EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR-IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~-~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+.. +........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 557889999999999999999999999999987654331 2222345689999999999999999999999999999988
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=105.49 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=60.8
Q ss_pred eccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..+.++.+.+|+++.|.|.+.|.|.| .|.|+|+|.++... .......|.|..+ .|.|.|.|.|+|.+|..
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGL---NETSKFSCEAHNAKGVT 73 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEccc---cCCeEEEEEEEeccCcE
Confidence 45567889999999999999999999 79999999998641 1123347999876 57899999999999976
Q ss_pred e-eeEEE
Q psy2776 756 T-HGARV 761 (803)
Q Consensus 756 ~-~~~~l 761 (803)
. +.++|
T Consensus 74 ~s~~a~~ 80 (81)
T cd05749 74 TSRTGTV 80 (81)
T ss_pred EeeeEEe
Confidence 4 45544
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=108.83 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=68.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-----CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-----KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-----~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|..+
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 567889999999999999999999999998766543 223333334457999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2776 592 LDLSLQV 598 (803)
Q Consensus 592 ~s~~l~V 598 (803)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 9988865
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=106.84 Aligned_cols=82 Identities=22% Similarity=0.475 Sum_probs=71.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC-CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+.... ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 577899999999999999999999999999988776666554433 2358999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 875
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=103.58 Aligned_cols=73 Identities=30% Similarity=0.401 Sum_probs=64.5
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.+.|+|++..+....++.+.. ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999999999999999999999987766665432 347999999999999999999999999999998875
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-12 Score=104.55 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred ceeEEEEEEcC--cCCCeeEEeeCCeeecC--C-CcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 524 SQWKVEVKYFG--FPRPEISWMKNGAEITD--S-KACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 524 ~~v~l~C~~~g--~p~~~v~W~~~g~~i~~--~-~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
+++.|.|.+.+ .+++.+.|+|||+.|.. . .++..... ...+.|.|.+++.+|+|.|+|.|+|..+..+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46889999977 45789999999999962 2 23333211 2456899999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99876
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=104.27 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=64.6
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|+.+.|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 688999999999999999999999988765432 1222345789999999999999999999999999999999873
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=102.98 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=60.5
Q ss_pred CCeEEEEEEEeecCCCceEEee-CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..+... .+|.|..+ ..+|+|.|+|.|.|.+|.++..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILIT-TVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEEC-ChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 6776665555444333 25899999 799999999999999999988887765
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-12 Score=103.64 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=62.6
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|++..+..+.+..+...+....|.|.++ ..+|.|.|+|.|.|.+|.+...+.|.|+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNV-RYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcC-CcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 4699999999999999999999987665433333344457999999 7899999999999999999999999884
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-12 Score=103.41 Aligned_cols=71 Identities=27% Similarity=0.538 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCCceEEeeCCeecc--CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
++|.|.+.|.|.|.+.|+|++.++. .+.++.... ...|.|.++ +.+|+|.|.|.|.|.+|.. +..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~g~L~i~~~-~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR---SGALQIENS-EESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC---CcEEEECCC-ChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999999999999999999987 344544322 235999999 7999999999999999996 788888873
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=102.47 Aligned_cols=71 Identities=20% Similarity=0.383 Sum_probs=59.4
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEE--Ee---cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRI--FI---DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~--~~---~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
-|.|.+.|+|.|+++|+|+|++|..+.+... .. ....++|.|.++..+|+|.|+|+|+|..|.++.++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999999987755422 11 12357899999999999999999999999998888765
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.1e-12 Score=105.30 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=68.9
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTL 229 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l 229 (803)
+.++.+.+|++++|.|.+.|. .|.+.|+|++..+...++.+......|.|.+++.+|+|.|+|.|.|..|.... .+.|
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 456788999999999999999 99999999999887666666666678999999999999999999999998654 5667
Q ss_pred EE
Q psy2776 230 LV 231 (803)
Q Consensus 230 ~V 231 (803)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 66
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-12 Score=103.69 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccC---CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLS---SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~---~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|..... ..++.+...+ ..|.|.++ +.+|+|.|.|.|.|.+|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~--~~L~I~~~-~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED--DVFFIVDV-KIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC--CEEEEeeC-CcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999999999999999999864322 2233332223 37999999 789999999999999999999999887
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-12 Score=107.91 Aligned_cols=76 Identities=28% Similarity=0.445 Sum_probs=59.4
Q ss_pred CCeEEEEEEEeecCCCceEEeeCC----eeccCCC-Ce-EEEe-------eCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNN----KPLLSSP-KK-REIF-------DGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~----~~l~~~~-~~-~~~~-------~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
|+.+.|.|.+.|.|.|.+.|+|++ ..+.... .. .... .+....|.|.++ +.+|+|.|+|.|+|.+|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNV-SFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecc-ccccCcEEEEEeecccC
Confidence 678999999999999999999953 3332221 11 1111 133457999999 79999999999999999
Q ss_pred ceeeeEEEEE
Q psy2776 754 SATHGARVTV 763 (803)
Q Consensus 754 ~~~~~~~l~V 763 (803)
...+++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9999999987
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=104.26 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=67.0
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEee-CCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..+....+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+... ....+|.|.++ +.+|+|.|+|.|.|.+|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNA-NIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecC-CcccCEEEEEEEEcCCCC
Confidence 3455678999999999999999975 999998 6777766556554443 35678999999 799999999999999765
Q ss_pred -eeeeEEEEE
Q psy2776 755 -ATHGARVTV 763 (803)
Q Consensus 755 -~~~~~~l~V 763 (803)
..+++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 466666653
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-12 Score=106.40 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=60.3
Q ss_pred CCeEEEEEEEeecCCCceEEeeC----CeeccCCCCe--EEEe-------eCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRN----NKPLLSSPKK--REIF-------DGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~----~~~l~~~~~~--~~~~-------~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
|+.+.|.|.+.|.|.|.+.|+|+ |..+..+... .+.. +.....|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNV-TFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccC-CHHHCEEEEEEEEeCCC
Confidence 68999999999999999999983 5555433221 1111 122368999999 79999999999999999
Q ss_pred ceeeeEEEEE
Q psy2776 754 SATHGARVTV 763 (803)
Q Consensus 754 ~~~~~~~l~V 763 (803)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999999987
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=101.11 Aligned_cols=69 Identities=23% Similarity=0.501 Sum_probs=57.8
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
++|.|.+.|.|.|.+.|+|++..+.. .++... . ...|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~-~--~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL-D--DKSLKIRNV-TAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe-e--CCEEEECcC-ChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999877643 344444 2 236999999 789999999999999999999888875
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-12 Score=104.72 Aligned_cols=78 Identities=26% Similarity=0.450 Sum_probs=64.6
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
.+..|+++.|.|.+.|.|.|.+.|++++..+....... .......|.|.++ +.+|+|.|+|.|.|..|..++.+.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNL-KPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccC-ChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45679999999999999999999999999876544322 2233468999999 79999999999999999988877765
Q ss_pred E
Q psy2776 763 V 763 (803)
Q Consensus 763 V 763 (803)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 4
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=101.92 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=58.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|++++.++..+ +.. .......|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNV-SEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCC-CHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999999999887543 222 2233457999999 789999999999999999999998887
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-12 Score=104.06 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=64.8
Q ss_pred ceeEEEEEEcCcCCC--eeEEeeCCeeecCCC---cE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 524 SQWKVEVKYFGFPRP--EISWMKNGAEITDSK---AC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 524 ~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~---~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
+.+.|.|.+.|.|.| .+.|+++|..+.... .+ +.......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999987 678999999886432 22 122223457899999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98865
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=105.63 Aligned_cols=88 Identities=27% Similarity=0.455 Sum_probs=69.8
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce------eEEEe--cCeeEEEEecCCCCcceEEEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR------NITYE--NNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~--~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
.|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+... ++... .....|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 456665555566666899999999999999999999988765421 22222 2346899999999999999999
Q ss_pred EEcCCcCeeeEEEEEE
Q psy2776 216 ATNEAGTAETSCTLLV 231 (803)
Q Consensus 216 a~n~~g~~~~s~~l~V 231 (803)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999988888765
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-12 Score=102.23 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=59.5
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-------CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-------EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-------~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
.|.|.+.|.|.|.++|+|+|..|..+........ ...+.|.|.++..+|+|.|+|.|+|..|.++.++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3789999999999999999999987654433211 2356899999999999999999999999999888775
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-12 Score=100.90 Aligned_cols=71 Identities=32% Similarity=0.627 Sum_probs=60.8
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
+.|.|.+.|.|.|.+.|+|++..+...+........+|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999999999999999887765444444456789999999999999999999999999888888763
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-12 Score=104.20 Aligned_cols=81 Identities=28% Similarity=0.437 Sum_probs=65.6
Q ss_pred cceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-
Q psy2776 679 FEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA- 755 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~- 755 (803)
+....+.+|+++.|.|.+ .|.|.|.+.|+|+|..+... .++.+.. ...|.|.++ +.+|+|.|+|.|.|.+|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEA-RKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeEC-CcccCEEEEEEEEeccCcee
Confidence 345678899999999998 79999999999999998763 3444332 236999999 7899999999999999987
Q ss_pred eeeEEEEE
Q psy2776 756 THGARVTV 763 (803)
Q Consensus 756 ~~~~~l~V 763 (803)
+..+.|.|
T Consensus 79 s~~~~l~V 86 (86)
T cd05724 79 SAAARLSV 86 (86)
T ss_pred eeeEEEEC
Confidence 55665543
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=102.77 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=72.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCC--CCeEEEee----CceEEEEEecCCCCCC-cee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSETD-AGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~~D-~G~ 743 (803)
||.| .......+.+|+++.|.|.+.+.|+| .+.|.+++..|..+ .++.+... +..++|.|.++ ...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~-~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNI-MEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCC-ccccCCcE
Confidence 5666 56667889999999999999889888 57888888887654 57777654 47889999999 4555 899
Q ss_pred EEEEEEccCcceeeeEEE
Q psy2776 744 YKVVATNELGSATHGARV 761 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l 761 (803)
|.|.|.|.+|++...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999988776
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-12 Score=101.02 Aligned_cols=68 Identities=31% Similarity=0.461 Sum_probs=59.7
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+.|.|.+.|.|.|.+.|+|+|..+..+.++.+.. .+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999999888766655432 4689999999999999999999999999988876
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-12 Score=99.64 Aligned_cols=68 Identities=34% Similarity=0.602 Sum_probs=57.3
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|+|.++....+. . .+..|.|.++..+|+|.|+|.|.|..|....+.++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 468999999999999999999999765322 1 2457999999999999999999999998777766655
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-12 Score=100.09 Aligned_cols=70 Identities=29% Similarity=0.526 Sum_probs=59.8
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.|.|.+.|.|+|.+.|+|+|..+..+.+.. .....|.|.++..+|+|.|+|.|.|..|....++.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999998764322 235789999999999999999999999998888777663
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=105.18 Aligned_cols=86 Identities=27% Similarity=0.458 Sum_probs=65.9
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC--eEEEeeCceEEEEEecCC----CCCCceeEEEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEAD----SETDAGDYKVVA 748 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~--~~~~~~~~~~~L~i~~v~----~~~D~G~Y~C~a 748 (803)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+..... +.+..++ .|.|.++. +.+|+|.|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence 44556677788999999999999999999999999999876543 3333333 35555541 368999999999
Q ss_pred Ecc-Ccce-eeeEEEEE
Q psy2776 749 TNE-LGSA-THGARVTV 763 (803)
Q Consensus 749 ~N~-~G~~-~~~~~l~V 763 (803)
.|. +|.. ++.+.|.|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 9987 66776654
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=106.96 Aligned_cols=81 Identities=27% Similarity=0.336 Sum_probs=67.1
Q ss_pred ecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEec----CCeEEEEEeeec-cCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFID----EETSTIAIYSVV-RADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~----~~~~~L~i~~v~-~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
.|..+.|.|.+.|.|.+.+.|+|+|..|... .++.+... ...+.|.|.++. .+|.|.|+|.|.|..|....++.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 4679999999999999999999999988643 34433211 124689999997 59999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 102 L~~~~~p 108 (109)
T cd05773 102 LVSTSRP 108 (109)
T ss_pred EEecCCC
Confidence 9998765
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-12 Score=100.75 Aligned_cols=73 Identities=33% Similarity=0.498 Sum_probs=58.4
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeec-CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~-~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.++|+|+|.... .....++.....+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986432 222222222334458999999999999999999999999999999987
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=100.90 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=66.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+.+|+.+.|.|.+.+. .+.+.|+|+|.+|..+.++.+. +..|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 4678899999999999986 5689999999999876665543 2479999999999999999999999998888877
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 65
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=100.06 Aligned_cols=75 Identities=31% Similarity=0.391 Sum_probs=64.3
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+.|.|.+.|.|.|.+.|+|++..+..+.+.++....++..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 468999999999999999999988766444444444567899999999999999999999999999999998853
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=100.17 Aligned_cols=71 Identities=24% Similarity=0.490 Sum_probs=57.7
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCC-cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEE--EEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSK-ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL--DLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~-~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~--s~~l~V 598 (803)
++|.|.+.|.|.|.++|+|+|..+..+. ++.+ ......|.|.++..+|+|.|+|.|.|..|.... .+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999999987653 3333 233468999999999999999999999998754 555555
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-12 Score=102.44 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCe---e--ccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNK---P--LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~---~--l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
|+++.|.|.+.|.|.|.+.|+|++. . +................|.|.++ +.+|+|.|.|.|.|.+|....++.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNA-QPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccC-CcccCEEEEEEEecCCceEEEEEEE
Confidence 7899999999999999999999732 1 11111111111123457999999 7999999999999999999999988
Q ss_pred EE
Q psy2776 762 TV 763 (803)
Q Consensus 762 ~V 763 (803)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 75
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=100.38 Aligned_cols=70 Identities=29% Similarity=0.429 Sum_probs=58.7
Q ss_pred EEEEEEEee-cCCCceEEeeCCeeccCCCCeE---EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 690 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKR---EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 690 v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~---~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+.|.|.+.| .|.|.+.|+|+|.++..+.+.. +........|.|.++ +.+|+|.|+|.|.|.+|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKA-KLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccC-CcccCeEEEEEEEEcCCceeEEEe
Confidence 369999999 8999999999999997665433 333345678999999 799999999999999999887764
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=96.34 Aligned_cols=68 Identities=19% Similarity=0.411 Sum_probs=56.9
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
|+++.|.|.+.|.|.|.+.|+|+|..+....+... ....|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999998866543321 34579999974 8999999999999998888776
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-12 Score=101.00 Aligned_cols=67 Identities=25% Similarity=0.455 Sum_probs=51.6
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCC----CCceeEEEEEEccCcceee
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE----TDAGDYKVVATNELGSATH 757 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~----~D~G~Y~C~a~N~~G~~~~ 757 (803)
+.|.|.+.|.|.|.|+|+|+|.++.......+........|.|..+ .. +|+|.|.|.|+|.+|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNM-NGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEecc-CCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999999999999999999986543323333333456888876 33 6899999999999998743
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-12 Score=104.72 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=65.1
Q ss_pred ceeEEecCCeEEEEEEEee-----cCCCceEEeeCCeeccCC--CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 680 EEKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
....+.+|+++.|.|.+.| .|.+.+.|||++.++... ...++...+ ..|.|.++ ..+|+|.|.|.|+|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~-~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPA-ALEDSGLYTCVVRNST 83 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC--CeEEEccC-CcccCeEEEEEEcCCC
Confidence 3567889999999999999 689999999998765321 122233333 47999999 7999999999999999
Q ss_pred cceeeeEEEEE
Q psy2776 753 GSATHGARVTV 763 (803)
Q Consensus 753 G~~~~~~~l~V 763 (803)
|.++.++.|.|
T Consensus 84 g~~~~~~~L~v 94 (94)
T cd05756 84 YCMKVSISLTV 94 (94)
T ss_pred ccEEEEEEEEC
Confidence 99999888875
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=102.46 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=60.3
Q ss_pred cceeEEEEEEcCcCCCeeEEeeC----CeeecCCCc--EEEE-------ecCCeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKN----GAEITDSKA--CRIF-------IDEETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~----g~~i~~~~~--~~~~-------~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.+.|.|.+.|.|.|.+.|+|+ |..+..... ..+. .....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 444443222 1111 1122468999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2776 590 TSLDLSLQV 598 (803)
Q Consensus 590 ~s~s~~l~V 598 (803)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999987
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=101.27 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=65.8
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+..|+.+.|.|.+.|.|.|.+.|+|++..+....... .......|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 345679999999999999999999999998876543222 223457899999999999999999999999988888876
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 5
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=96.80 Aligned_cols=70 Identities=30% Similarity=0.493 Sum_probs=56.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|.++..+... ...++ .+|.|.++ +.+|+|.|+|.|+|..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~~~--~~L~I~~v-~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHVDG--YSLVIKDV-TEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEeCC--CEEEECcC-CHHHCEEEEEEEEccccceEeeEEEEE
Confidence 469999999999999999999998765322 22233 37999999 799999999999999877776666654
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=98.94 Aligned_cols=66 Identities=27% Similarity=0.424 Sum_probs=50.1
Q ss_pred EEEEEEEeecCCCceEEeeCCeecc--CCCCeEEEeeCceEEEEEecCC---CCCCceeEEEEEEccCcceee
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEAD---SETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~L~i~~v~---~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
+.|.|.+.|.|.|.++|+|+|.++. .+.++.+..+ ..+|.|..+. ..+|+|.|.|.|+|.+|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~--~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRR--SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCC--CceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4699999999999999999999764 3445544333 3468887651 125799999999999998743
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=97.80 Aligned_cols=73 Identities=27% Similarity=0.478 Sum_probs=61.0
Q ss_pred cceeEEEEEEcCcCCCeeEEee-CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..+.. ..+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999999999999997 666666554443322 357999999999999999999999999998888865
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=99.25 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=49.6
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCC----CCceeEEEEEEccCcceee
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE----TDAGDYKVVATNELGSATH 757 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~----~D~G~Y~C~a~N~~G~~~~ 757 (803)
+.|.|.+.|.|.|.+.|+|+|.++.......+.......+|.|..+ .. .|.|.|+|.|+|.+|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIM-NGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEecc-ccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4799999999999999999999875433322233233345777666 32 3789999999999999754
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=98.01 Aligned_cols=70 Identities=33% Similarity=0.666 Sum_probs=60.6
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
+.|.|.+.|.|.|.+.|+|++..+.............|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998776554444455678999999999999999999999999888888876
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=97.08 Aligned_cols=69 Identities=32% Similarity=0.593 Sum_probs=59.1
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
++|.|.+.|.|.|.+.|+|++..+...+.... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999887765554443 3457999999999999999999999999988888765
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-11 Score=101.99 Aligned_cols=76 Identities=26% Similarity=0.370 Sum_probs=63.0
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeec--------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEIT--------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~--------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
|+.+.|.|.+.|.|.|.+.|+|+|..+. ...++.+. ....|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS---QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC---CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999999999999999999886531 12333332 235799999999999999999999999999999
Q ss_pred EEEEeee
Q psy2776 595 SLQVLGY 601 (803)
Q Consensus 595 ~l~V~~~ 601 (803)
.|.|.+.
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 9999864
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=100.31 Aligned_cols=81 Identities=25% Similarity=0.465 Sum_probs=64.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee-CCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCC-CeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK-NGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAG-STSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-~~s~s 593 (803)
...+..|+.+.|.|.+.|.|+ .+.|++ ++..+....++.+... ...++|+|.++..+|+|.|+|.|.|..| ....+
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred cEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 467889999999999999975 999998 6776766555444332 3457999999999999999999999965 46677
Q ss_pred EEEEE
Q psy2776 594 LSLQV 598 (803)
Q Consensus 594 ~~l~V 598 (803)
+.|.|
T Consensus 88 v~l~~ 92 (92)
T cd04977 88 VNLKI 92 (92)
T ss_pred EEEEC
Confidence 77654
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=102.75 Aligned_cols=88 Identities=30% Similarity=0.479 Sum_probs=67.1
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-------eEEEecC-eeEEEE--ecCCCCcceEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-------NITYENN-VARFTV--VNCSESSEGRYT 213 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~~~-~~~L~i--~~v~~~d~G~Y~ 213 (803)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .....++ ...+.+ .++..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 477888888899999999999999999999999999999887641 1112222 222333 234799999999
Q ss_pred EEEEcCCcC-eeeEEEEEE
Q psy2776 214 CKATNEAGT-AETSCTLLV 231 (803)
Q Consensus 214 C~a~n~~g~-~~~s~~l~V 231 (803)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 555677765
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=101.69 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=59.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCC----eeecCCCc-E-EEEe-------cCCeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNG----AEITDSKA-C-RIFI-------DEETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g----~~i~~~~~-~-~~~~-------~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.+.|.|.+.|.|.|.++|+|++ ..+..... . .... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 33322211 1 1111 122358999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2776 590 TSLDLSLQV 598 (803)
Q Consensus 590 ~s~s~~l~V 598 (803)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999987
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-11 Score=96.93 Aligned_cols=72 Identities=28% Similarity=0.365 Sum_probs=58.1
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l~V 598 (803)
++|.|.+.|.|.|.+.|+|++..+......++... .++.|.|.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999998874322222222 34579999999999999999999999984 67777776
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-11 Score=99.12 Aligned_cols=82 Identities=27% Similarity=0.537 Sum_probs=61.5
Q ss_pred CeeEeccceeEEec---CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 673 PLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 673 p~~~~~~~~~~v~~---g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|.|+..+..+.+.+ |+++.|.|.+.|.|.|.+.|++++.++............. .|.|.++...+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 56777777665544 4689999999999999999999999885432222222222 588888733489999999999
Q ss_pred ccCccee
Q psy2776 750 NELGSAT 756 (803)
Q Consensus 750 N~~G~~~ 756 (803)
|.+|...
T Consensus 80 N~~G~~~ 86 (91)
T cd04967 80 NIVGTVL 86 (91)
T ss_pred cCCCEEE
Confidence 9999864
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-11 Score=99.57 Aligned_cols=83 Identities=25% Similarity=0.405 Sum_probs=62.5
Q ss_pred CeeeccCcCeeeec---CCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEecCeeEEEEecCC-CCcceEEEEEEEc
Q psy2776 145 PVIQEPLKDSVAGF---QSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCS-ESSEGRYTCKATN 218 (803)
Q Consensus 145 p~i~~~~~~~~v~~---G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n 218 (803)
|.|...|.+..+.+ |+.+.|.|.+.|.|.|.++|+|++..+.. .+.... ...|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--GGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--CCEEEECcCCcCCCCEEEEEEEEe
Confidence 45555566655444 44899999999999999999999987752 233333 3579999985 6999999999999
Q ss_pred CCcCeee-EEEE
Q psy2776 219 EAGTAET-SCTL 229 (803)
Q Consensus 219 ~~g~~~~-s~~l 229 (803)
..|.... .+.|
T Consensus 80 ~~G~~~s~~a~l 91 (93)
T cd05849 80 IYGKVRSREATL 91 (93)
T ss_pred CcceEEEccEEE
Confidence 9998654 3444
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=100.24 Aligned_cols=81 Identities=25% Similarity=0.244 Sum_probs=63.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeee-----ccCcCeEEEEEEEcC-CCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV-----VRADTSTYTVTATNA-AGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v-----~~~dsG~Y~C~a~n~-~g~~ 590 (803)
...+.+|+++.|.|.+.|.|.|.+.|+|+|..+....+.+..... ++.|.|.++ ..+|.|.|+|.|.|. .|..
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP-NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc-CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 566788999999999999999999999999998765432222222 345777776 589999999999999 9986
Q ss_pred -EEEEEEEE
Q psy2776 591 -SLDLSLQV 598 (803)
Q Consensus 591 -s~s~~l~V 598 (803)
+..+.|.|
T Consensus 87 ~s~~~~l~v 95 (95)
T cd05722 87 VSRTARLTV 95 (95)
T ss_pred EEeeeEEeC
Confidence 66777664
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=97.07 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=58.6
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEE---EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACR---IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~---~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
+.|.|.+.| .|.|.+.|+|+|..+....+.. +......+.|.|.++..+|+|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 9999999999999987654432 333345689999999999999999999999999887765
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.1e-11 Score=100.29 Aligned_cols=80 Identities=26% Similarity=0.317 Sum_probs=66.1
Q ss_pred ceEEeecceeEEEEEEcCcCCC-eeEEeeCCeeecCC--CcEEEEec----CCeEEEEEeeeccC-cCeEEEEEEEcCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDS--KACRIFID----EETSTIAIYSVVRA-DTSTYTVTATNAAG 588 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~--~~~~~~~~----~~~~~L~i~~v~~~-dsG~Y~C~a~n~~g 588 (803)
...+.+|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... ...+.|.|.++..+ |.|.|+|.|.|..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 4668899999999999999999 69999999988754 45555432 12368999999994 49999999999999
Q ss_pred CeEEEEEE
Q psy2776 589 STSLDLSL 596 (803)
Q Consensus 589 ~~s~s~~l 596 (803)
.+...+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 98888776
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=98.54 Aligned_cols=79 Identities=28% Similarity=0.424 Sum_probs=64.5
Q ss_pred ceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEE
Q psy2776 517 SQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s 593 (803)
...+.+|+++.|.|.+ .|.|.|.+.|+|+|..+... .+..+.. .+.|.|.++..+|+|.|+|.|.|..|.. +..
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 5778899999999998 79999999999999988764 3333322 4589999999999999999999999985 455
Q ss_pred EEEEE
Q psy2776 594 LSLQV 598 (803)
Q Consensus 594 ~~l~V 598 (803)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 55543
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-11 Score=99.05 Aligned_cols=81 Identities=27% Similarity=0.503 Sum_probs=61.6
Q ss_pred CeeeccCcCeeee---cCCcEEEEEEECccCCCeeEEEEcCeeccce-eEEEecCeeEEEEecCC-CCcceEEEEEEEcC
Q psy2776 145 PVIQEPLKDSVAG---FQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-NITYENNVARFTVVNCS-ESSEGRYTCKATNE 219 (803)
Q Consensus 145 p~i~~~~~~~~v~---~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~ 219 (803)
|.|...|.++.+. +|+.+.|.|.+.|.|.|++.|+|++..+... ...+......|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 4555556665443 4789999999999999999999999988632 22222233578999985 69999999999999
Q ss_pred CcCeee
Q psy2776 220 AGTAET 225 (803)
Q Consensus 220 ~g~~~~ 225 (803)
.|...+
T Consensus 82 ~G~~~S 87 (94)
T cd05848 82 IGSILS 87 (94)
T ss_pred CCeEEe
Confidence 997643
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=105.16 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=82.3
Q ss_pred EEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEe
Q psy2776 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644 (803)
Q Consensus 565 ~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 644 (803)
.|.|.+++.+|+|.|.|.+.+..|.....+.|.|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-------------------------------------------- 37 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE-------------------------------------------- 37 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec--------------------------------------------
Confidence 689999999999999999999988889999998866
Q ss_pred cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccC-----CC
Q psy2776 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLS-----SP 717 (803)
Q Consensus 645 n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~-----~~ 717 (803)
+|.+...+......+|+.+.|.|.+.|. |. +.|.|+++|..... ..
T Consensus 38 ---------------------------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~ 90 (139)
T cd05771 38 ---------------------------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSN 90 (139)
T ss_pred ---------------------------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCC
Confidence 4444444444444578999999999996 54 48999999864211 11
Q ss_pred ----CeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 718 ----KKREIFDGE---NIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 718 ----~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
......++. .+.|.|..- ..++.+.|+|.+.+..-
T Consensus 91 ~~~~~~~~~~dgt~~~~s~L~v~~~-~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 91 VSFSSHRQHQDGTYSLSSHLTLEPG-TEDAGATYTCRVSHVSL 132 (139)
T ss_pred eEecceEeCCCCCEEEEEEEEecCC-ccCCCCEEEEEEEcCCC
Confidence 111122232 345667654 33456789999987543
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=101.25 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=65.6
Q ss_pred ceEEeecceeEEEEEEcC-----cCCCeeEEeeCCeeecCC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFG-----FPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-----~p~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
...+.+|+.+.|.|.+.+ .|.+.+.|+|+|..+... .+.++.. .+..|.|.++..+|+|.|+|.|.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 567789999999999999 688999999999765432 2223322 2468999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2776 590 TSLDLSLQV 598 (803)
Q Consensus 590 ~s~s~~l~V 598 (803)
...++.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999888875
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=93.53 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=54.0
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEE
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 229 (803)
+.|.|.+.|.|.|++.|+|++.++......+.....+|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 46999999999999999999998765422223334579999999999999999999987665554443
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-11 Score=97.87 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeec--CCCceEEeeCCeeccCCCCe---EE--EeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 687 KGTIRLMAKVKAS--PAPSIVWFRNNKPLLSSPKK---RE--IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 687 g~~v~L~C~~~g~--p~~~v~W~~~~~~l~~~~~~---~~--~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
|+.+.|.|.+.|. |.|.+.|++++..+...... .. ......++|.|.++ +.+|+|.|+|.|.|..|..+.++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v-~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNA-TLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCC-ChhhCEEEEEEEccCCCceEEEE
Confidence 7899999999999 88899999987765322111 01 11234578999999 89999999999999999999999
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.1e-11 Score=95.35 Aligned_cols=77 Identities=19% Similarity=0.412 Sum_probs=61.4
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET- 225 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~- 225 (803)
...|++..+.+|+.+.|.|.+.|.|.| +|.|+|++..+... .......|.|.++ .|+|.|.|.|.|..|....
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~---~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP---PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC---CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 345677889999999999999999999 79999999988641 2233457999887 5789999999999997654
Q ss_pred EEEE
Q psy2776 226 SCTL 229 (803)
Q Consensus 226 s~~l 229 (803)
.++|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 4444
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-11 Score=96.38 Aligned_cols=67 Identities=22% Similarity=0.391 Sum_probs=53.6
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeecc----CcCeEEEEEEEcCCCCeEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR----ADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~----~dsG~Y~C~a~n~~g~~s~ 592 (803)
+.|.|.+.|.|.|.++|+|+|..+......++......+.|.|.++.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 479999999999999999999988654333344444567899998854 7899999999999998543
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-11 Score=97.19 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=58.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCe---e--ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGA---E--ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~---~--i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
|+.+.|.|.+.|.|.|.+.|+|++. . +................|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6889999999999999999999742 1 1111100001112346899999999999999999999999999999887
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-11 Score=96.62 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=53.7
Q ss_pred EEEEEEEeecCCCceEEeeCCeecc--------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLL--------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGAR 760 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~--------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~ 760 (803)
++|.|.+.|.|.|.+.|++++.... .+.++.... ..+|.|.++ ..+|+|.|.|.|.|.+|.+ +.++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS---NGSLLIKHV-LEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec---CCeEEECcC-CcccCEEEEEEEEeCCCCCCceEEE
Confidence 5799999999999999999643211 233443322 246999999 7899999999999999988 67776
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|+|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 654
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=96.79 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=62.9
Q ss_pred CeeeccCcCeeeecC---CcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecCC-CCcceEEEEEEE
Q psy2776 145 PVIQEPLKDSVAGFQ---SSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCS-ESSEGRYTCKAT 217 (803)
Q Consensus 145 p~i~~~~~~~~v~~G---~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~ 217 (803)
|.|...|.++.+.+| +.+.|.|.+.|+|.|.++|++++..+.. ..+... ...|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--CCeEEEccCCccCcCEEEEEEEE
Confidence 455666666666555 6899999999999999999999988752 222222 3568898865 599999999999
Q ss_pred cCCcCeee-EEEE
Q psy2776 218 NEAGTAET-SCTL 229 (803)
Q Consensus 218 n~~g~~~~-s~~l 229 (803)
|..|.... .+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 99997654 4444
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=94.46 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=55.8
Q ss_pred EEEEEEEee-cCCCceEEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 690 IRLMAKVKA-SPAPSIVWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 690 v~L~C~~~g-~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+.|+|.+.+ .|.+.+.|++||..+.... ++.+........|.|.++ ..+|+|.|+|.|.|.+|.++.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKA-SLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcC-CcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 6888999999999886432 233333345578999999 799999999999999999988765
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=94.26 Aligned_cols=67 Identities=25% Similarity=0.392 Sum_probs=52.0
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeecc----CcCeEEEEEEEcCCCCeEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR----ADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~----~dsG~Y~C~a~n~~g~~s~ 592 (803)
+.|.|.+.|.|.|+++|+|+|..+.......+.....+++|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 479999999999999999999987543332333334456888887764 3789999999999998654
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=93.89 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=51.8
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec----cCcCeEEEEEEEcCCCCeEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV----RADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~----~~dsG~Y~C~a~n~~g~~s~s 593 (803)
+.|.|.+.|+|.|.++|+|+|..+......++.....+++|.|.++. .+|+|.|+|.|+|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999987753322233333345789998874 246999999999999976543
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=94.10 Aligned_cols=81 Identities=26% Similarity=0.489 Sum_probs=66.5
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
..+..|+.+.|.|.+.|.|.+.+.|++++..+.......... ......|.|.++ ..+|.|.|.|.|.|.+|..+.++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESV-VPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeEC-CcccCEEEEEEEEECCceEEEEEE
Confidence 346679999999999999999999999999887554443222 234567999999 789999999999999999988887
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 764
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=93.81 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc--ceeeeEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKVVATNELG--SATHGAR 760 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G--~~~~~~~ 760 (803)
|++++|.|.+.|.|.+.+.|++.++...... +..+......++|.|.++ +.+|+|.|.|.|+|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHA-TVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCC-CcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999999999999998776432111 111112234678999999 79999999999999987 6677777
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|+|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 766
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=95.05 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=60.6
Q ss_pred cceeEEEEEEcCc--CCCeeEEeeCCeeecCCCcE---EEE--ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 523 KSQWKVEVKYFGF--PRPEISWMKNGAEITDSKAC---RIF--IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 523 g~~v~l~C~~~g~--p~~~v~W~~~g~~i~~~~~~---~~~--~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
|+.+.|.|.+.|. |.+.+.|.+++..+...... ... .....++|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 88999999887655332111 111 1123579999999999999999999999999999998
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 81 v~v~ 84 (84)
T cd05742 81 VNIH 84 (84)
T ss_pred EEEC
Confidence 8773
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=92.83 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=58.0
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.+...|....+.+|++++|+|.+.|.|.+ .+.|+|||..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~--~~dsG~Y~C~a~~~- 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA--NNDSGEYRCQTQGS- 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec--ccCCEEeEEECCCC-
Confidence 34555667789999999999999998874 6999999998732 1236888888 58999999999986
Q ss_pred cceeeeEEEE
Q psy2776 753 GSATHGARVT 762 (803)
Q Consensus 753 G~~~~~~~l~ 762 (803)
..+..+.|+
T Consensus 69 -~~S~~v~l~ 77 (78)
T cd05752 69 -SLSDPVHLE 77 (78)
T ss_pred -cCCCCEEEe
Confidence 444445444
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-10 Score=95.14 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=64.5
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEee--------CCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFR--------NNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--------~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+.++.+.+|+++.|.|.+.+.|.+.+.|++ ++.....+.|+....+ ....+|.|.++ +.+|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDV-SLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcC-CcccCEEEEEEeE
Confidence 346789999999999999999999999986 3333334566665333 45678999999 7999999999999
Q ss_pred ccCcceeeeEEEEE
Q psy2776 750 NELGSATHGARVTV 763 (803)
Q Consensus 750 N~~G~~~~~~~l~V 763 (803)
+. ...+..+.|+|
T Consensus 83 t~-~~~~~~~~l~v 95 (95)
T cd07701 83 TM-PVKTSKAYLTV 95 (95)
T ss_pred ee-cCccEEEEEEC
Confidence 95 44477777765
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-10 Score=94.56 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=63.6
Q ss_pred EeccceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
+..+....+.+|++++|.|.+.+ .|.+.+.|++++..+.... . .....|.|.++ +.+|+|.|.|.|.|..|.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v-~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNV-QLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCC-CHHHCEEEEEEEeccCCe
Confidence 34455678899999999999975 6888999999987653321 1 12347999999 799999999999999999
Q ss_pred eeeeEEE
Q psy2776 755 ATHGARV 761 (803)
Q Consensus 755 ~~~~~~l 761 (803)
..+++.|
T Consensus 78 ~~~~~~l 84 (85)
T cd05754 78 DEATATL 84 (85)
T ss_pred EeEEEEE
Confidence 9988876
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=91.57 Aligned_cols=67 Identities=18% Similarity=0.398 Sum_probs=55.6
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
|.+...|....+.+|++++|+|.+.+.|.+ .+.|+|++..+. .....|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 345566777889999999999999987764 699999998763 13457999999 99999999999875
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-10 Score=90.71 Aligned_cols=70 Identities=21% Similarity=0.396 Sum_probs=55.7
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCC----CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDS----KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~----~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
+.|.|.+.+ .|.+.+.|+|+|..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 677899999999988643 1223333345678999999999999999999999999887765
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-10 Score=93.55 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=64.7
Q ss_pred eeEEecCCeEEEEEEEee-----cCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 681 EKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
...+.+|+++.|.|...+ +|.|.+.|+||+.++....+.. . ....|.|.++ ..+|+|.|+|.|.|.+|..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v-~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNV-TEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeC-ChhhCEEEEEEEEecCCCE
Confidence 356788999999997643 2578999999999997655432 2 3347999999 7999999999999999999
Q ss_pred eeeEEEEEEe
Q psy2776 756 THGARVTVDV 765 (803)
Q Consensus 756 ~~~~~l~V~~ 765 (803)
...+...+.+
T Consensus 79 ~~~~t~t~~l 88 (92)
T cd05757 79 QYNVTRTISL 88 (92)
T ss_pred EEEEEEEEEE
Confidence 8877777765
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-10 Score=90.54 Aligned_cols=69 Identities=25% Similarity=0.322 Sum_probs=55.9
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.+..+..|+++.|.|.+.+ |.+.+.|++||.+|..+.......++ .|.|.++ +.+|+|.|+|.|.+.-
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~---~L~I~nv-~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD---GLLIFNA-SEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC---cEEEeCC-CHHHCEEEEEEEEecc
Confidence 45678899999999999864 77899999999999876433333333 4999999 7999999999999863
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=92.15 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=62.1
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeec--------cCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+..+.+|+++.|.|.+.|.|.|.+.|++.+..+ ..+.++.+... .....|.|.++ +.+|+|.|+|.|..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV-~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNV-QLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCC-CcccCEEEEEEEEe
Confidence 3678999999999999999999999998876532 23445544333 34578999999 79999999999998
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
.-..++.+.|+|
T Consensus 84 -~~~~~~~~~~~v 95 (95)
T cd05882 84 -MPVRTAKATVTV 95 (95)
T ss_pred -eccccEEEEEEC
Confidence 334455555543
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=91.75 Aligned_cols=81 Identities=23% Similarity=0.261 Sum_probs=67.2
Q ss_pred cceEEeecceeEEEEEEcCcCCC-eeEEeeCCeeecCC--CcEEEEec----CCeEEEEEeeeccCc-CeEEEEEEEcCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDS--KACRIFID----EETSTIAIYSVVRAD-TSTYTVTATNAA 587 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~--~~~~~~~~----~~~~~L~i~~v~~~d-sG~Y~C~a~n~~ 587 (803)
..+.+.+|+++.|.|.+.+.|+| .+.|.+++..|..+ .++.+... +..++|.|.++...| .|.|.|.|.|..
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 35778899999999999889987 57899888877654 56666543 356899999998877 799999999999
Q ss_pred CCeEEEEEE
Q psy2776 588 GSTSLDLSL 596 (803)
Q Consensus 588 g~~s~s~~l 596 (803)
|.+...+.|
T Consensus 89 G~d~~~i~L 97 (98)
T cd05898 89 GSGTAIIQL 97 (98)
T ss_pred ccceEEEEe
Confidence 999888776
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=90.53 Aligned_cols=81 Identities=25% Similarity=0.414 Sum_probs=66.7
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ......|.|.++..+|+|.|.|.|.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 456679999999999999999999999998887554333222 2345689999999999999999999999998888887
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-10 Score=91.20 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=58.4
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCc--EEEEe--cCCeEEEEEeeeccCcCeEEEEEEEcCCC--CeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKA--CRIFI--DEETSTIAIYSVVRADTSTYTVTATNAAG--STSLDLSL 596 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~--~~~~~--~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g--~~s~s~~l 596 (803)
|+++.|.|.+.+.|.+.+.|.+.++....... ..... ....+.|.|.+++.+|+|.|+|.|+|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 78999999999999999999987764322110 01111 12257999999999999999999999876 57777777
Q ss_pred EEe
Q psy2776 597 QVL 599 (803)
Q Consensus 597 ~V~ 599 (803)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 774
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-10 Score=91.45 Aligned_cols=70 Identities=20% Similarity=0.375 Sum_probs=53.6
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeec--------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEIT--------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSL 596 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~--------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l 596 (803)
++|.|.+.|.|.|.+.|+|++.... ...++.+. .+++|.|.++..+|+|.|+|.|.|..|.. +.++.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5799999999999999999753221 11233221 24689999999999999999999999986 666666
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 54
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=91.99 Aligned_cols=81 Identities=28% Similarity=0.528 Sum_probs=59.8
Q ss_pred CeeeccCcCeeeec---CCcEEEEEEECccCCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCC-CCcceEEEEEEEcC
Q psy2776 145 PVIQEPLKDSVAGF---QSSVTLECVVSGVPTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCS-ESSEGRYTCKATNE 219 (803)
Q Consensus 145 p~i~~~~~~~~v~~---G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~ 219 (803)
|.|...+.+..+.+ |+.+.|.|.+.|+|.|.++|+|++..+.. ....+......|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence 45555566655443 46799999999999999999999988742 111222223578999887 49999999999999
Q ss_pred CcCeee
Q psy2776 220 AGTAET 225 (803)
Q Consensus 220 ~g~~~~ 225 (803)
.|....
T Consensus 82 ~G~~~S 87 (91)
T cd04967 82 VGTVLS 87 (91)
T ss_pred CCEEEe
Confidence 997543
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=99.42 Aligned_cols=117 Identities=14% Similarity=0.250 Sum_probs=77.4
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
+|+|.+++.+|+|.|.|.+.+..+.... .+.|.+..+|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~------------------------------------------~~~l~v~~~P 39 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQ------------------------------------------IIQLSVSEPP 39 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceee------------------------------------------EEEEEEecCC
Confidence 6999999999999999999987666554 5566777776
Q ss_pred CCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecC----CCcEE---EEecCC-----eEEEEEe
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITD----SKACR---IFIDEE-----TSTIAIY 569 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~----~~~~~---~~~~~~-----~~~L~i~ 569 (803)
..... . .......|+.+.|.|.+.|. |. +.+.|+++|..... ..... .....+ .+.|.|.
T Consensus 40 ~v~~~---~---~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~ 113 (139)
T cd05771 40 RVRLS---L---EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLE 113 (139)
T ss_pred ceEEe---C---CCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEec
Confidence 54211 1 12233468899999999996 54 48999999854221 01111 111111 2466666
Q ss_pred eeccCcCeEEEEEEEcCCC
Q psy2776 570 SVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g 588 (803)
.-..++.+.|+|.+.+...
T Consensus 114 ~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 114 PGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccCCCCEEEEEEEcCCC
Confidence 5555567799999988644
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.6e-10 Score=92.42 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=59.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC--CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC-ccee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVATNEL-GSAT 756 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~-G~~~ 756 (803)
..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.... ...+.... ..|.|.++ +.+|+|.|.|.|.|.. +...
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~-~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSV-SPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccC-CHHHCEEEEEEEecCccceeE
Confidence 3567889999999999987 888999999998876543 11222222 24889999 7999999999999764 4445
Q ss_pred eeEEEEE
Q psy2776 757 HGARVTV 763 (803)
Q Consensus 757 ~~~~l~V 763 (803)
.++.|.|
T Consensus 80 ~~~~l~V 86 (89)
T cd04979 80 ATYSLNV 86 (89)
T ss_pred eEEEEEE
Confidence 5565555
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=88.91 Aligned_cols=67 Identities=16% Similarity=0.368 Sum_probs=55.4
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
|.+..+.+|+++.|.|.+.+ |.+.+.|++++..+... ++.. ....|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~--~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL--YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE--ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 56778889999999999865 67899999999988643 3333 23469999999999999999999875
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=90.94 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=62.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--------eeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--------AEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--------~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
...+.+|+++.|.|.+.+.|.+.+.|++.+ .....+.++.+... ....+|.|.++..+|+|.|+|.+.+..
T Consensus 6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred eEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 678899999999999999999999998632 22223345555333 345799999999999999999999854
Q ss_pred CCeEEEEEEEE
Q psy2776 588 GSTSLDLSLQV 598 (803)
Q Consensus 588 g~~s~s~~l~V 598 (803)
+ .+.++.|.|
T Consensus 86 ~-~~~~~~l~v 95 (95)
T cd07701 86 V-KTSKAYLTV 95 (95)
T ss_pred C-ccEEEEEEC
Confidence 3 477777664
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=89.53 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=63.3
Q ss_pred cCcCeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 150 PLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
.|....+.+|++++|.|.+.+ .|.+.+.|++++..++.... .....|.|.+++.+|+|.|.|.|.|..|....++.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCccc---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 356677889999999999974 78889999999876543321 23457999999999999999999999999888876
Q ss_pred E
Q psy2776 229 L 229 (803)
Q Consensus 229 l 229 (803)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 6
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=89.58 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=62.6
Q ss_pred ceEEeecceeEEEEEEcC-----cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFG-----FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-----~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.+.+.+|..+.|.|...+ +|.|.+.|+|++.++....+. +. .+..|.|.++..+|+|.|+|.|.|..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 467888999999998543 357899999999998765433 22 457899999999999999999999988876
Q ss_pred EEEEEEE
Q psy2776 592 LDLSLQV 598 (803)
Q Consensus 592 ~s~~l~V 598 (803)
..+...+
T Consensus 80 ~~~t~t~ 86 (92)
T cd05757 80 YNVTRTI 86 (92)
T ss_pred EEEEEEE
Confidence 6665554
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.8e-09 Score=87.72 Aligned_cols=80 Identities=10% Similarity=0.172 Sum_probs=60.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeee--------cCCCcEEEEecC-CeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI--------TDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i--------~~~~~~~~~~~~-~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
...+.+|+++.|.|.+.+.|.+.+.|++++..+ ....++.+.... ....|.|.++..+|+|.|+|.+...
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~- 84 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM- 84 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-
Confidence 678899999999999999999999999877543 122344433322 3579999999999999999999883
Q ss_pred CCeEEEEEEE
Q psy2776 588 GSTSLDLSLQ 597 (803)
Q Consensus 588 g~~s~s~~l~ 597 (803)
-..++.+.|.
T Consensus 85 ~~~~~~~~~~ 94 (95)
T cd05882 85 PVRTAKATVT 94 (95)
T ss_pred ccccEEEEEE
Confidence 3444444444
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.7e-09 Score=85.54 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=69.3
Q ss_pred eeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccCCCCeEEEeeC-----ceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
...|.+|+.+.|.|.++++|+|. +.|.+.+.++.......+.... -.++|.+.++ ..+|+|.|+|.|+|..++
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rl-k~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRL-KGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeec-ChhhCcEEEEEEECCCCe
Confidence 46799999999999999999997 9999998877554442222222 2478999999 899999999999999999
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999988874
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=88.14 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=56.9
Q ss_pred eEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeE
Q psy2776 682 KTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGA 759 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~ 759 (803)
..+.+|++++|.|.+. +.|.+.+.|+|+|..+... .....|.|.++ +.+|+|.|+|.|.|..|.. +..+
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~-~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQA-TLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECcc-CHHHCEEEEEEEEeCCceecCCCE
Confidence 3688999999999985 4567789999999876421 22457999999 7999999999999999865 4444
Q ss_pred EEE
Q psy2776 760 RVT 762 (803)
Q Consensus 760 ~l~ 762 (803)
.|+
T Consensus 80 ~i~ 82 (83)
T cd05753 80 SIT 82 (83)
T ss_pred EEE
Confidence 444
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-09 Score=89.08 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=62.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcC-CCCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNA-AGSTSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~-~g~~s~s 593 (803)
.+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+.... ..++... ...|.|.++..+|+|.|.|.|.|. .+....+
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 567889999999999987 888999999998776542 1222222 235999999999999999999865 4556777
Q ss_pred EEEEEee
Q psy2776 594 LSLQVLG 600 (803)
Q Consensus 594 ~~l~V~~ 600 (803)
+.|.|..
T Consensus 82 ~~l~V~~ 88 (89)
T cd04979 82 YSLNVLE 88 (89)
T ss_pred EEEEEec
Confidence 8887753
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-09 Score=89.89 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=57.6
Q ss_pred eeEEecCCeEEEEEEE-eecCCCceEEeeCCeec--cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 681 EKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPL--LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l--~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
...+.+|+.+.|.|.. .|.|.+.+.|++++.++ ..+.+..+.. ....|.|.+| +.+|+|.|.|.|+|.++..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v-~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKV-EASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeec-CHhhCceeEEEEEecccCC
Confidence 4678899999999966 78899999999998865 2344444443 2336999999 7999999999999988665
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=84.18 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=69.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecC-----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~-----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
.+.|.+|+.+.|.|.+.++|+|. +.|.+++..+.+.....+.... ..+.|.|.++..+|+|.|+|.|+|+.+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 57799999999999999999997 9999998877655442222211 34799999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy2776 591 SLDLSLQVL 599 (803)
Q Consensus 591 s~s~~l~V~ 599 (803)
+.++.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999998874
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-09 Score=85.90 Aligned_cols=71 Identities=31% Similarity=0.609 Sum_probs=57.0
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc-ceeeeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG-SATHGAR 760 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G-~~~~~~~ 760 (803)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+..+. .. |.|..+ +.+|+|.|+|.|.|..| ..+.++.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~~--~~~~~~-~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------NG--LFIPNV-SPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------SE--EEESSE-EGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------ee--eeeeee-ccccCEEEEEEEEeCCCCeEeeeEE
Confidence 568899999999999999999999999988775322 11 677777 78999999999999654 5567776
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|+|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 665
|
... |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=82.98 Aligned_cols=82 Identities=33% Similarity=0.517 Sum_probs=70.9
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeC-CeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++ +.+|+|.|.|.+.|..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeEEEEE
Confidence 45678899999999999988899999998 88887677777766665678999999 79999999999999999988777
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7765
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=82.98 Aligned_cols=82 Identities=33% Similarity=0.517 Sum_probs=70.9
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeC-CeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++ +.+|+|.|.|.+.|..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeEEEEE
Confidence 45678899999999999988899999998 88887677777766665678999999 79999999999999999988777
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7765
|
|
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-09 Score=87.18 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=58.4
Q ss_pred cceeEEecCCeEEEEEE-EeecCCCceEEeeCCee-ccCCCCeEEEeeCceEEEEEecCCCCCCce-eEEEEEEccCcce
Q psy2776 679 FEEKTVKEKGTIRLMAK-VKASPAPSIVWFRNNKP-LLSSPKKREIFDGENIILELKEADSETDAG-DYKVVATNELGSA 755 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G-~Y~C~a~N~~G~~ 755 (803)
...+.|.+|+++.|.|. ..|.|.|.|.|++++.. +..+.|+.+..+ ..|.|.++ +.+|+| .|.|.|.|.+...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v-~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANV-EEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEE-ehhhCCCCeEEEEEcccccc
Confidence 35678999999999997 69999999999987654 444555444333 46999999 799999 7999999987554
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-09 Score=79.55 Aligned_cols=63 Identities=32% Similarity=0.608 Sum_probs=51.9
Q ss_pred cCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
+|+++.|.|.+.+.|.+.+.|++++..+. ..... ......|.|.++ ..+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~--~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRL--SASGSTLTIKSV-SLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEE--ecCCcEEEEeeC-CcccCEEEEEEEecCCC
Confidence 48899999999999999999999998886 22222 233457999999 78999999999999876
|
|
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-09 Score=86.85 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=56.8
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeec-c-------------CCCCeEEEe---eCceEEEEEecCCCCCCceeE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-L-------------SSPKKREIF---DGENIILELKEADSETDAGDY 744 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l-~-------------~~~~~~~~~---~~~~~~L~i~~v~~~~D~G~Y 744 (803)
+.+.+|++|+|.|.+.+.|.+.+.|++++... . ...++.... +...+.|.|.++ +.+|+|+|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l-~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNL-KIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCC-CHHHCEEE
Confidence 35778999999999999999999999766321 1 122333333 445678999999 89999999
Q ss_pred EEEEEccCccee
Q psy2776 745 KVVATNELGSAT 756 (803)
Q Consensus 745 ~C~a~N~~G~~~ 756 (803)
.|.|.|..++..
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999988754
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=84.77 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCeEEEEEEEeecCCC--ceEEeeCCeeccCC---CC--eEE-EeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 687 KGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PK--KRE-IFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~---~~--~~~-~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
|+++.|.|.+.+.|.+ .+.|.+.+..+... .. ... ......++|.|.++ +.+|+|.|+|.|+|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENV-TLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecC-CcccCEEEEEEEeecceEeccc
Confidence 7899999999887654 78999877643211 11 100 11234678999999 7999999999999999999999
Q ss_pred EEEEEE
Q psy2776 759 ARVTVD 764 (803)
Q Consensus 759 ~~l~V~ 764 (803)
+.|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 999884
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=85.22 Aligned_cols=82 Identities=26% Similarity=0.335 Sum_probs=60.7
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCee--------ccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP--------LLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~--------l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
....+.+|++++|.|.+.+.|.+.+.|++-+.. ...+.++.... .+..+.|.|.++ +.+|+|.|+|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNV-SLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccC-CcccCEEEEEEEec
Confidence 456789999999999999989999999852211 11234555432 234678999999 89999999999998
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
... .+.++.|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 763 466666654
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.2e-09 Score=86.16 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=56.8
Q ss_pred ceEEeecceeEEEEE-EcCcCCCeeEEeeCCeee--cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 517 SQRLSVKSQWKVEVK-YFGFPRPEISWMKNGAEI--TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~-~~g~p~~~v~W~~~g~~i--~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
...+.+|+.+.|.|. -.|.|.+.+.|++++..+ ....+. ......+.|.|.+|+.+|+|.|+|.|+|..+..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 567889999999997 567899999999998754 222222 233346799999999999999999999986544
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-08 Score=79.60 Aligned_cols=82 Identities=30% Similarity=0.447 Sum_probs=69.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678899999999999988899999998 88887555666555444689999999999999999999999888877777
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-08 Score=79.60 Aligned_cols=82 Identities=30% Similarity=0.447 Sum_probs=69.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678899999999999988899999998 88887555666555444689999999999999999999999888877777
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=84.34 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=57.6
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCC--eec----cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE-ccCc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL----LSSPKKREIFDGENIILELKEADSETDAGDYKVVAT-NELG 753 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l----~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~-N~~G 753 (803)
.+.+.+|+++.|.|.. +.|.|.+.||+.+ ... ..+.++.. .+ ..|.|.++ +.+|+|.|.|.|. |..|
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~--~~L~I~~~-~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TE--RGLLLRSL-QRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ec--CeEEEeeC-ChhHCEEEEEEEEccCCe
Confidence 3567889999999997 5899999999843 221 12233322 22 34999999 8999999999998 6888
Q ss_pred ceeeeEEEEE
Q psy2776 754 SATHGARVTV 763 (803)
Q Consensus 754 ~~~~~~~l~V 763 (803)
...+.+.|+|
T Consensus 79 ~~~~~~~l~v 88 (91)
T cd05871 79 QTLAKYTLHV 88 (91)
T ss_pred EEEEEEEEEE
Confidence 7888777777
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=83.37 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=53.0
Q ss_pred eeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 154 SVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
..+.+|++++|+|.+.+ .+.+.+.|+|++..+.. ......|.|.+++.+|+|.|+|.+.+..+..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 46789999999999864 56668999999976642 2234679999999999999999999998743
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=77.65 Aligned_cols=63 Identities=35% Similarity=0.581 Sum_probs=52.7
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
+|+.+.|.|.+.+.|.+.+.|++++..+.. ..........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC-CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999988889999999999887762 333334556899999999999999999998764
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.0015 Score=83.00 Aligned_cols=221 Identities=14% Similarity=0.117 Sum_probs=123.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe-eec--CCCcEEEEecCCeEEEEEeeeccCcCeEEEE--EEEcCCCCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA-EIT--DSKACRIFIDEETSTIAIYSVVRADTSTYTV--TATNAAGSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-~i~--~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C--~a~n~~g~~s 591 (803)
...+..|+.++|.+.+.+.+...+.|..++. ... ++..+.. ...--|.|.. .|.|..+...
T Consensus 1876 ~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~H--------------sY~~~G~Y~VtV~A~N~Vs~~~ 1941 (2740)
T TIGR00864 1876 KKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFSH--------------SFPRVDDHMVNLRAKNEVSCAQ 1941 (2740)
T ss_pred cccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEEe--------------ecCCCCcEEEEEEEEeccceee
Confidence 3456789999999998887888889987542 211 1111110 1122344443 4456666655
Q ss_pred EEEEEEEeeeE------------------------eEeeecccccEEEeeeeC---------CccceEEEcccccCceeE
Q psy2776 592 LDLSLQVLGYI------------------------IQQQEKNSLKFTKVATLD---------PSTLQYTVENLRDKSEYY 638 (803)
Q Consensus 592 ~s~~l~V~~~p------------------------~~~~~~~~~~w~~~~~~~---------~~~~~~~~~~~~~~~~~~ 638 (803)
....+.|..+- ++...+-.+.|+...... +....|+. ....-|.
T Consensus 1942 a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~---~~~G~~~ 2018 (2740)
T TIGR00864 1942 ANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA---EAAGLLE 2018 (2740)
T ss_pred eeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc---CCCcEEE
Confidence 55555554442 222223345566443211 22222333 3566778
Q ss_pred EEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-CceEEeeCCeeccCCC
Q psy2776 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSP 717 (803)
Q Consensus 639 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~~~~l~~~~ 717 (803)
.+++|.|.+|.........+.... . .. .+.. .......|..+.|.|.+...+. ..+.|-+++.......
T Consensus 2019 I~v~A~N~l~s~n~t~~i~VQ~~i--~------~~-~L~~-~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T 2088 (2740)
T TIGR00864 2019 IQLGAFNALGAENITLQLEAQDAL--M------DA-ALQA-GPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDT 2088 (2740)
T ss_pred EEEEEEcccCcccccEEEEEEehe--e------eE-EEee-cCcceecCceEEEEEEEccCCCcEEEEEEecCCCCcccc
Confidence 889999999986533322222111 0 00 1110 0123445889999999865444 4799999844321111
Q ss_pred CeEEEeeCceEEEEEecCCCCCCceeEE--EEEEccCcceeeeEEEEEEeeccCCCCCccc
Q psy2776 718 KKREIFDGENIILELKEADSETDAGDYK--VVATNELGSATHGARVTVDVEKVGRPSINSI 776 (803)
Q Consensus 718 ~~~~~~~~~~~~L~i~~v~~~~D~G~Y~--C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~ 776 (803)
+... +.- .....|.|. ..|.|.+....+.+.+.|.+.+=-+|.+...
T Consensus 2089 ------~~~~----~sH--tY~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~C~~P~V~i~ 2137 (2740)
T TIGR00864 2089 ------DEPR----AEH--EYLHPGDYRVQVNASNLVSFFSAHAEINVQVLACEEPEVDVV 2137 (2740)
T ss_pred ------CCce----eEE--EecCCccEEEEEEEEcceeeeeeEEEEEEEEecCCCCCcEec
Confidence 0111 111 234558885 5578999999999999998877667777655
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=82.92 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=57.9
Q ss_pred cceeEEEEEEcCcCC--CeeEEeeCCeeecCC---CcEEEE---ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 523 KSQWKVEVKYFGFPR--PEISWMKNGAEITDS---KACRIF---IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 523 g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~---~~~~~~---~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
|+++.|.|.+.+.+. ..+.|.+.+..+... ...+.. .....++|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 788999999987654 577998877643221 110111 122357999999999999999999999999999999
Q ss_pred EEEEe
Q psy2776 595 SLQVL 599 (803)
Q Consensus 595 ~l~V~ 599 (803)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 99885
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.6e-08 Score=82.52 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=59.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeee--------cCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI--------TDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i--------~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
...+.+|+++.|.|.+.+.+.+.+.|++.+..+ ....++.+.. ......|.|.+++.+|+|.|+|.+.+..
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 567899999999999998888999998632211 1124554432 2345689999999999999999999765
Q ss_pred CCeEEEEEEEE
Q psy2776 588 GSTSLDLSLQV 598 (803)
Q Consensus 588 g~~s~s~~l~V 598 (803)
..+.++.|.|
T Consensus 86 -~~~~~~~~~v 95 (95)
T cd05717 86 -VQTAKATVTV 95 (95)
T ss_pred -CceEEEEEEC
Confidence 3466666654
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=82.44 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=54.2
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--------------CcEEEEe---cCCeEEEEEeeeccCcCeEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--------------KACRIFI---DEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--------------~~~~~~~---~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
+.+.+|++++|.|.+.+.+.+.+.|+++++....+ .++.... ..+...|+|.++..+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 34678999999999999999999999776432111 1222221 334468999999999999999
Q ss_pred EEEEcCCCC
Q psy2776 581 VTATNAAGS 589 (803)
Q Consensus 581 C~a~n~~g~ 589 (803)
|.|.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999998765
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-08 Score=81.77 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=56.8
Q ss_pred eEEecCCeEEEEEE-Eeec----CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 682 KTVKEKGTIRLMAK-VKAS----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 682 ~~v~~g~~v~L~C~-~~g~----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+..|....|.|. ..++ +.+.+.|||++.+|....+......+ ...|.|.++ +.+|+|.|+|+|.|.+|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v-~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDV-SLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEc-ChhhCEEEEEEEEEeeCCEE
Confidence 45667899999996 3333 66799999999998765543333222 235999999 79999999999999987764
Q ss_pred eeE
Q psy2776 757 HGA 759 (803)
Q Consensus 757 ~~~ 759 (803)
-.+
T Consensus 83 y~v 85 (95)
T cd05897 83 YNI 85 (95)
T ss_pred EEE
Confidence 333
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-08 Score=82.26 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=58.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe--ee----cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE-cCCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA--EI----TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT-NAAGS 589 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~--~i----~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~-n~~g~ 589 (803)
.+.+.+|+.+.|.|.. +.|.|.+.|+|.+. .. ..+.++.. ....|.|.++..+|+|.|+|.|. |..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3567889999999996 57889999998432 21 11223322 23569999999999999999998 57777
Q ss_pred eEEEEEEEEee
Q psy2776 590 TSLDLSLQVLG 600 (803)
Q Consensus 590 ~s~s~~l~V~~ 600 (803)
....+.|.|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 77788888753
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-08 Score=80.09 Aligned_cols=71 Identities=30% Similarity=0.496 Sum_probs=57.6
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-CeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-STSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-~~s~s~~l 596 (803)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+....+ . |.|.++..+|+|.|+|.|.+..+ ..+.++.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------G--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------E--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------e--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 5688999999999999999999999999877763211 1 77889999999999999999654 45666666
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 79 ~V 80 (80)
T PF13895_consen 79 TV 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 54
|
... |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-08 Score=80.84 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=58.7
Q ss_pred ceEEeecceeEEEEE-Ec----CcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-
Q psy2776 517 SQRLSVKSQWKVEVK-YF----GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST- 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~-~~----g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~- 590 (803)
.+.+.+|....|.|. .. ..+.++++|+|++.++....+... ...+...|.|.++..+|+|.|+|+|++..|..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 356778999999997 23 346679999999999875432211 11234579999999999999999999987654
Q ss_pred ---EEEEEEEE
Q psy2776 591 ---SLDLSLQV 598 (803)
Q Consensus 591 ---s~s~~l~V 598 (803)
+..+.|.|
T Consensus 83 y~vtr~~~l~v 93 (95)
T cd05897 83 YNITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEEE
Confidence 34444444
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.5e-07 Score=80.42 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=52.7
Q ss_pred eEEeecceeEEEEEEcC---cCCCeeEEeeCC----eee-------------cCCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 518 QRLSVKSQWKVEVKYFG---FPRPEISWMKNG----AEI-------------TDSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g---~p~~~v~W~~~g----~~i-------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
..+..|+.+.|+|.... .+...|.|+|.+ ..+ +.-.++.+..+.++.+|.|.++..+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 45678999999999652 244688999942 111 1112344445567889999999999999
Q ss_pred EEEEEEEcCCCCeEE
Q psy2776 578 TYTVTATNAAGSTSL 592 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~ 592 (803)
.|+|..+........
T Consensus 101 tY~C~fQkge~~~~k 115 (221)
T PHA03376 101 NYLCRMKLGETEVTK 115 (221)
T ss_pred eEEEEEEcCCCceee
Confidence 999999876544333
|
|
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.3e-08 Score=80.01 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=57.4
Q ss_pred cceEEeecceeEEEEE-EcCcCCCeeEEeeCCee-ecCCCcEEEEecCCeEEEEEeeeccCcCe-EEEEEEEcCCCCe
Q psy2776 516 KSQRLSVKSQWKVEVK-YFGFPRPEISWMKNGAE-ITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGST 590 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~-~~g~p~~~v~W~~~g~~-i~~~~~~~~~~~~~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~ 590 (803)
....+.+|+.+.|.|. ..|.|.|.+.|++++.. +..+.+ +.... .+.|.|.++..+|+| .|.|.|+|.....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~R--i~~~~-~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDER--VSMGQ-NGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccccccc--EEECC-CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 4678999999999998 69999999999987754 333333 33333 489999999999999 7999999986443
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00081 Score=85.24 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=125.6
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCe-eecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE--EEcCCCCeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGA-EITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT--ATNAAGSTSLDL 594 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~--a~n~~g~~s~s~ 594 (803)
..+..|+.++|.-...+-....++|..++. ....... .+ .-+....|.|... |.|..|....+.
T Consensus 1707 ~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p----------~~---tHtf~~~G~y~VtVta~N~vss~~~s~ 1773 (2740)
T TIGR00864 1707 NPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEP----------FM---SHSFPSAGLHLVTMKAFNELGSANASE 1773 (2740)
T ss_pred CcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCC----------ce---EEEccCCceEEEEEEEEccccccceeE
Confidence 345668899998887777888999987553 2111111 00 1124567888764 469999888888
Q ss_pred EEEEeeeE----eEeee-----------------------cccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 595 SLQVLGYI----IQQQE-----------------------KNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 595 ~l~V~~~p----~~~~~-----------------------~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
.+.|..+. +.... ...+.|..... ......-...-......|..++.|.|++
T Consensus 1774 ~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g-~s~~gk~v~~Tf~~aG~ytV~L~AsN~v 1852 (2740)
T TIGR00864 1774 EVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGG-SSKMGKHACMTFPDAGTFAIRLNASNAV 1852 (2740)
T ss_pred EEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCC-CccccceeEEecCCCeEEEEEEEEEccc
Confidence 88887665 11111 11233444321 1122233334455566778889999999
Q ss_pred CCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCce
Q psy2776 648 GLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727 (803)
Q Consensus 648 g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~ 727 (803)
+....+....+..... .+........+..|+.++|++.+...+...+.|.+++..-. +...+..
T Consensus 1853 s~~~~s~~~~VQe~I~----------~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~------~~t~~~t 1916 (2740)
T TIGR00864 1853 SGKSASREFFAEEPIF----------GLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPE------VLQPGPR 1916 (2740)
T ss_pred CcceeeeeEEEEEecc----------eEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCce------eecCCCe
Confidence 8877655444432110 01111223457789999999999877888899998753211 1112222
Q ss_pred EEEEEecCCCCCCceeE--EEEEEccCcceeeeEEEEEEe
Q psy2776 728 IILELKEADSETDAGDY--KVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y--~C~a~N~~G~~~~~~~l~V~~ 765 (803)
..-. ..-.|.| +..|+|.++...+.+.+.|..
T Consensus 1917 ~~Hs------Y~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle 1950 (2740)
T TIGR00864 1917 FSHS------FPRVDDHMVNLRAKNEVSCAQANLHIEVLE 1950 (2740)
T ss_pred EEee------cCCCCcEEEEEEEEeccceeeeeEEEEEEE
Confidence 2222 2344665 678999999988888777753
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-08 Score=75.48 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=47.1
Q ss_pred cceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcCeEEEEEE
Q psy2776 523 KSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 523 g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a 583 (803)
|+.++|+|.+ .+.+...+.|++++..+.............. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7778889999999886655433333332222 13999999999999999987
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-08 Score=76.83 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=48.1
Q ss_pred EEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeC----ceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|+|... |.|++.++||+|+++|...... ...+ ...+|.|... ..+|.+.|+|.|.|.++..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t~~s~L~~~~~-~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVSVSNTIRFPVD-RKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEEEEEEEEEEee-eccCCcEEEEEEEChhhCC
Confidence 68999985 4599999999999999653211 1111 2346888887 7899999999999998865
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=77.07 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=55.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeec--------cCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.++++.+|+++.|+|.+.+.....+.|++-+..+ ..+.|+.... ++...+|.|.++ +.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~v-q~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNV-SLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcC-CcccCEEEEEEEEc
Confidence 4578999999999999998866667776644322 3667777665 567889999999 79999999999985
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.7e-08 Score=75.64 Aligned_cols=61 Identities=18% Similarity=0.408 Sum_probs=47.0
Q ss_pred CCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCce--EEEEEecCCCCCCceeEEEEE
Q psy2776 687 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGEN--IILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 687 g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~--~~L~i~~v~~~~D~G~Y~C~a 748 (803)
|+.++|.|.+ .+.|...+.|++++..+.............. ..|.|.++ +.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNV-TPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSC-TGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccC-CHHHCEEEEEEC
Confidence 7899999999 7778889999999887654443333333221 23999999 799999999987
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=77.27 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=52.8
Q ss_pred eEEEEEEEee-cCCCceEEeeCCeeccCCCCeEE-EeeCc----eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 689 TIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 689 ~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~-~~~~~----~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
++.|.|.+.| .|.+.++|+++|.++........ ..++. .+.|.|... ..+|.|.|+|.|.|..........++
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPS-DHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCc-eecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999987 58899999999998865422111 12222 346778776 56788999999999886665555555
Q ss_pred EE
Q psy2776 763 VD 764 (803)
Q Consensus 763 V~ 764 (803)
++
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 43
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=75.59 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=61.9
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
.+..+..|+.+.|.|...+ +...+.|++||.++..+.++....+| |.|.++ +..|+|.|.|.|. ..|-...-+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~-~~~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVT-SPEHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC----CEEEEC-CHhhCEEEEEEEe-cCCCeEEEE
Confidence 3567889999999999986 46699999999999877665544433 678888 7899999999998 666666556
Q ss_pred EEEEEe
Q psy2776 760 RVTVDV 765 (803)
Q Consensus 760 ~l~V~~ 765 (803)
.+.+.+
T Consensus 77 ~y~l~v 82 (85)
T cd05872 77 SYSLNV 82 (85)
T ss_pred EEEEEE
Confidence 665544
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=106.27 Aligned_cols=450 Identities=13% Similarity=0.077 Sum_probs=258.2
Q ss_pred eeecCCcEEEEEEECccCCCeeEEEEcCe------eccceeEEE---ecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDS------LIKGRNITY---ENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 155 ~v~~G~~~~L~C~~~g~p~p~i~W~~~~~------~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
...+|....|.-.+.+.|.+...|-..+. +.......+ .....++-+.....+|.+.|.-.-.+..+ ...
T Consensus 51 ~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~ 129 (1205)
T KOG0613|consen 51 QVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMVPATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-VVP 129 (1205)
T ss_pred eccCCcceeeeeeeccccccCCCCcccccchhhcccccccccccccccccccccccccccccccccccccccccCC-ccc
Confidence 34455555555555555555544533322 222111111 11223344445555666666555555444 333
Q ss_pred EEEE-EEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCc
Q psy2776 226 SCTL-LVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTP 304 (803)
Q Consensus 226 s~~l-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (803)
+..+ .....+.+...+..+..........+.....+......+++..........|..++.-..+
T Consensus 130 ~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~-------------- 195 (1205)
T KOG0613|consen 130 SPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTD-------------- 195 (1205)
T ss_pred cchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccC--------------
Confidence 3332 2233344555555555555555555555555555566777777777766666544432221
Q ss_pred cccccccCCceeeec--cccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 305 AVEFLSKLPSVTLVP--HLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 305 ~~~~~~~~~~~~~~~--~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
...... -...+.+.|.+|.|.+...|+.+|..+..+....+.......-+.|..+-..+.|.|.....|
T Consensus 196 ---------~s~~~~a~~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~ 266 (1205)
T KOG0613|consen 196 ---------DSTDTDAHYESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILG 266 (1205)
T ss_pred ---------CcceeccccceeEEEEEecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhc
Confidence 111111 134467889999999999999999999888777776666666677777777777877665555
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
..+...- ..+..+..|.+....+.+.|+|...+..+......
T Consensus 267 ~l~e~~~-----------------------------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v--------- 308 (1205)
T KOG0613|consen 267 YLIEQRK-----------------------------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKV--------- 308 (1205)
T ss_pred chhhhcc-----------------------------cCCCccccccccCCccccceeeecccCCcccceee---------
Confidence 4333211 12345567777788888888998888777766621
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eE
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-IS 541 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~ 541 (803)
....+.-.-...|.. .....+..+.+.+............+..+.+.|...+.+.+. +.
T Consensus 309 ~~~~~i~~~~~~p~~--------------------~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~ 368 (1205)
T KOG0613|consen 309 TEEAPIGKGKPGPES--------------------LQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQ 368 (1205)
T ss_pred eEEeeccccccCchh--------------------hhhhccCCccccccccccceeccccCcceeecccccCCcCCchhe
Confidence 222221111111111 111111111222233333355667778899999999998886 99
Q ss_pred EeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeee
Q psy2776 542 WMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATL 619 (803)
Q Consensus 542 W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~ 619 (803)
|++++.....+. .+..........+.|..+...+.+.|.|.|.|..|.........|....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~----------------- 431 (1205)
T KOG0613|consen 369 GYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEM----------------- 431 (1205)
T ss_pred eecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhccccc-----------------
Confidence 999887766553 2222233344678889999999999999999998875544444443321
Q ss_pred CCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecC--CeEEEEEEEe
Q psy2776 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK--GTIRLMAKVK 697 (803)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g--~~v~L~C~~~ 697 (803)
....|.+...........+ +.+.+.|...
T Consensus 432 -------------------------------------------------~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~ 462 (1205)
T KOG0613|consen 432 -------------------------------------------------PGTQPPKFKKDVSTTDLLTVKDEITVRTPDS 462 (1205)
T ss_pred -------------------------------------------------CCCCCccccccccccccccCCcccccccCCC
Confidence 1112222233333333344 7899999998
Q ss_pred ecCCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 698 ASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 698 g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.+ .++|++++.+. ..+......+...+|.+.-. +..|+|.|.-...-.-|..
T Consensus 463 s~~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~-~~~~~A~~~~a~~~~~~k~ 519 (1205)
T KOG0613|consen 463 STSMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVA-SLSDGAQYTRALRTLQGKP 519 (1205)
T ss_pred CccccceeEeeccCCccc--ccccccccccchhhheeecc-CCCccchhhhhhhccCCCC
Confidence 88755 56677765553 22332333344556777666 6889999966665544444
|
|
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=76.69 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=60.3
Q ss_pred ceeEEecCCeEEEEEEE------e-----ecCCCceEEeeCCeeccCCCC-----eEEEeeCceEEEEEecCCCCCCcee
Q psy2776 680 EEKTVKEKGTIRLMAKV------K-----ASPAPSIVWFRNNKPLLSSPK-----KREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~------~-----g~p~~~v~W~~~~~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
....+.+|+++.|.|.. . ......+.|+|++..+..... .++...+. .|.|.++ ..+|+|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa-~~eDSG~ 84 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPA-ELQDSGL 84 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeC-ChhhCeE
Confidence 34578899999999986 1 122347999999766554332 24444455 6999999 7999999
Q ss_pred EEEEEEccCcceeeeEEEEE
Q psy2776 744 YKVVATNELGSATHGARVTV 763 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+|++.|.-.-...++.|+|
T Consensus 85 Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 85 YTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEECCCCcceEEEEEEEC
Confidence 99999999988777777664
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-07 Score=76.89 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=57.1
Q ss_pred eeeecCCcEEEEEEEC-----------ccCCCeeEEEEcCeecccee------EEEecCeeEEEEecCCCCcceEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVS-----------GVPTPDIKWYKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~-----------g~p~p~i~W~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
..+.+|+++.|.|..- ......+.|+|++..+.... .........|.|.++..+|+|.|+|++
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 5677999999999961 11223699999974433211 133334567999999999999999999
Q ss_pred EcCCcCeeeEEEEEE
Q psy2776 217 TNEAGTAETSCTLLV 231 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V 231 (803)
.|.....+.+++|.|
T Consensus 90 rN~t~C~~~~i~l~V 104 (104)
T cd05896 90 RNSTYCMKVSMSLTV 104 (104)
T ss_pred CCCCcceEEEEEEEC
Confidence 999887777777654
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.8e-07 Score=73.64 Aligned_cols=70 Identities=6% Similarity=0.036 Sum_probs=55.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeee--------cCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI--------TDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i--------~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
+..+.+|+++.|+|.+.+.....+.|++-+..+ ..+.|+.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 577899999999999998877778887765332 3446666554 345678999999999999999999763
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=77.24 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=56.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.|.+...+. ..|.+|++++|+|... .+...+.|+|+|................|.|.+++.+|+|.|+|...+..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence 355555554 4678999999999986 56778999999875442222223445679999999999999999999863
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=73.08 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=48.6
Q ss_pred eEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEec---CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 526 WKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFID---EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 526 v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
++|+|.. .|+|++.++|+|++++|..... ..... ...++|.|.....+|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6899996 5679999999999999965321 00000 023579999999999999999999997753
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=72.45 Aligned_cols=72 Identities=22% Similarity=0.393 Sum_probs=50.2
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEE
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQ 597 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~ 597 (803)
+.|+|.+.| .|.+.++|+|+|+.+............+ .+.|.|.....+|.|.|+|.|.|..... ..++.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 689999987 6889999999999886542211111111 2578888877788999999999986543 4444443
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.1e-07 Score=72.25 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=59.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE-cCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT-NAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~-n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|...+. .+.+.|+++|..+..+.++.... .-|.|.+++..|+|.|.|.+. +..-.......
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~ 79 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSEEEGFQQLVASYS 79 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence 5778999999999999874 66999999999987655544332 237899999999999999986 44444555555
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 80 l~v 82 (85)
T cd05872 80 LNV 82 (85)
T ss_pred EEE
Confidence 555
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-07 Score=74.29 Aligned_cols=73 Identities=21% Similarity=0.426 Sum_probs=49.2
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecC-CCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
|.+...+.......++ ++|.|.+.+.| .+.+.|+ +...... ............|.|.++ ..+|.|.|+|+|+|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v-~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNV-TRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSC-CGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccC-CHHhCcEEEEEEEC
Confidence 4555555444444444 99999999887 7899999 1111111 111122345678999999 79999999999998
|
... |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-07 Score=75.38 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=52.4
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
...|.+|++|+|+|... .+...+.|+++|...... + ....+....|.|.++ +.+|+|.|+|...|.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v-~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSM-KREHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCC-ChhHCEEEEEEEECC
Confidence 45788999999999886 677889999998864321 1 122355678999999 789999999999997
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-07 Score=72.89 Aligned_cols=73 Identities=33% Similarity=0.583 Sum_probs=50.6
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccC-CCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
|.|...+.......+. +.|.|.+.+.+ .+.+.|+...................|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5565555555554444 99999999877 7889999111111112222334567899999999999999999987
|
... |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=76.75 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=56.9
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCe---ec-----------cCCCCeEEEee--CceEEEEEecCCCCCCce
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK---PL-----------LSSPKKREIFD--GENIILELKEADSETDAG 742 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~---~l-----------~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G 742 (803)
+....+.+|++++|.|.+.+.+...+.|++... +. ....|+.+..+ ...+.|.|.++ +.+|+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~~~DsG 83 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAA-QLSDSA 83 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCC-CHHHCE
Confidence 445678999999999999987888999998532 10 12345555443 36789999999 899999
Q ss_pred eEEEEEEccCc
Q psy2776 743 DYKVVATNELG 753 (803)
Q Consensus 743 ~Y~C~a~N~~G 753 (803)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999998643
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=75.20 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=57.8
Q ss_pred cCCeEEEEEEEeecC------CCceEEeeCCe------e--cc----------CCCCeEEEee-CceEEEEEecCCCCCC
Q psy2776 686 EKGTIRLMAKVKASP------APSIVWFRNNK------P--LL----------SSPKKREIFD-GENIILELKEADSETD 740 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p------~~~v~W~~~~~------~--l~----------~~~~~~~~~~-~~~~~L~i~~v~~~~D 740 (803)
.|++|+|.|.....| ...+.|+|... . +. ...|+..... ...+.|.|.++ +.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDL-RLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccC-ChHH
Confidence 489999999987664 24699999531 1 11 0123332211 23568999999 7999
Q ss_pred ceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 741 AGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+|.|.|.+.|..|.....+.|.|++
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999999999999999875
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=73.79 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=57.5
Q ss_pred cceeEEEEEEcCcC------CCeeEEeeCC-----e-ee--cCCC--------cEEEEe---cCCeEEEEEeeeccCcCe
Q psy2776 523 KSQWKVEVKYFGFP------RPEISWMKNG-----A-EI--TDSK--------ACRIFI---DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 523 g~~v~l~C~~~g~p------~~~v~W~~~g-----~-~i--~~~~--------~~~~~~---~~~~~~L~i~~v~~~dsG 577 (803)
|++++|.|.+...+ ...+.|+|.. . .+ ..+. +.++.. .....+|.|.+++.+|+|
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G 81 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG 81 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence 88999999988654 4689999862 1 11 0111 111211 234579999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEee
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.+..+.....+.|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 82 RYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999888889999999875
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=74.09 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=57.9
Q ss_pred cCCeEEEEEEEeecC------------CCceEEeeCC--e-e--cc-----------CCCCeEEEe---eCceEEEEEec
Q psy2776 686 EKGTIRLMAKVKASP------------APSIVWFRNN--K-P--LL-----------SSPKKREIF---DGENIILELKE 734 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p------------~~~v~W~~~~--~-~--l~-----------~~~~~~~~~---~~~~~~L~i~~ 734 (803)
.|++++|.|...... .+.+.|+|.. . + +. ...|+.+.. ....+.|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999987542 3589999842 1 1 10 112444433 33568899999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+ +.+|+|+|.|.+.+.+...+..+.|.|++
T Consensus 81 l-~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 L-RSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred c-ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 9 89999999999998888888888888865
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-06 Score=73.96 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=57.6
Q ss_pred cCCeEEEEEEEeecC------CCceEEeeCC---e---ecc--CCCCe--------EEE---eeCceEEEEEecCCCCCC
Q psy2776 686 EKGTIRLMAKVKASP------APSIVWFRNN---K---PLL--SSPKK--------REI---FDGENIILELKEADSETD 740 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p------~~~v~W~~~~---~---~l~--~~~~~--------~~~---~~~~~~~L~i~~v~~~~D 740 (803)
.|++|+|.|.....+ .+.+.|+|.. . .+. .+... +.. .....+.|.|.++ +.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDL-RLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCC-CHHH
Confidence 489999999998764 4589999962 1 110 11111 111 1235688999999 7999
Q ss_pred ceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 741 AGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+|.|.|.+.|..+.....+.|.|.+
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999999999889999998864
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=75.97 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=55.1
Q ss_pred ccceeEEecCCeEEEEEEEeecCCCceEEeeCCe--ecc----------------CCCCeEEEeeC-ceEEEEEecCCCC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLL----------------SSPKKREIFDG-ENIILELKEADSE 738 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~--~l~----------------~~~~~~~~~~~-~~~~L~i~~v~~~ 738 (803)
.+....+.+|++++|.|.+.+ +.+.+.|||... .+. ...++....+. ..+.|.|.++ +.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~-~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA-EP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC-Ch
Confidence 344578899999999999988 778899999532 110 12345444433 5688999999 79
Q ss_pred CCceeEEEEEEccCc
Q psy2776 739 TDAGDYKVVATNELG 753 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G 753 (803)
+|+|.|.|.+.+..|
T Consensus 82 ~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 82 EDSAVYLCASSLGGG 96 (110)
T ss_pred hhCEEEEEEeeCCCC
Confidence 999999999998643
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=73.42 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred ecceeEEEEEEcCcC------------CCeeEEeeCC--e---ee---------cCC--CcEEEEe---cCCeEEEEEee
Q psy2776 522 VKSQWKVEVKYFGFP------------RPEISWMKNG--A---EI---------TDS--KACRIFI---DEETSTIAIYS 570 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p------------~~~v~W~~~g--~---~i---------~~~--~~~~~~~---~~~~~~L~i~~ 570 (803)
.|++++|.|.+.... .+.+.|+|.. . .+ ... .|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999987543 3589999842 1 11 111 1333322 23568999999
Q ss_pred eccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 571 VVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998877888888888865
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.1e-06 Score=72.55 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCeEEEEEEEeecCC---CceEEeeCCe--ec---------c------CCCCeEEEe---eCceEEEEEecCCCCCCcee
Q psy2776 687 KGTIRLMAKVKASPA---PSIVWFRNNK--PL---------L------SSPKKREIF---DGENIILELKEADSETDAGD 743 (803)
Q Consensus 687 g~~v~L~C~~~g~p~---~~v~W~~~~~--~l---------~------~~~~~~~~~---~~~~~~L~i~~v~~~~D~G~ 743 (803)
|++|+|.|...+... ..+.|++... .+ . ...|..... .....+|.|.++ +.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNV-RASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcC-ChhhCEE
Confidence 788999999863322 2578887541 11 1 012332221 134578999999 7999999
Q ss_pred EEEEEEccCcceeeeEEEEE
Q psy2776 744 YKVVATNELGSATHGARVTV 763 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+|.+.|.-|.....+.|+|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999998888777777776
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=73.89 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=54.0
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCee---------------ccceeEEEe----cCeeEEEEecCCCCcce
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL---------------IKGRNITYE----NNVARFTVVNCSESSEG 210 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~---------------~~~~~~~~~----~~~~~L~i~~v~~~d~G 210 (803)
.+..+.+.+|++++|.|.+.+.+...+.|++.... ....++... .....|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 34567888999999999999777778999985421 011222222 25678999999999999
Q ss_pred EEEEEEEcCCc
Q psy2776 211 RYTCKATNEAG 221 (803)
Q Consensus 211 ~Y~C~a~n~~g 221 (803)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999997653
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=73.47 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=54.7
Q ss_pred eccceeEEecCCeEEEEEEEeecC-CCceEEeeCC--ee---cc---------CCCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNN--KP---LL---------SSPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~~--~~---l~---------~~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
..+....+.+|++|+|.|.+.+.+ ...+.|||.. .. |. ...++.....+..+.|.|.++ +.+|+
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~-~~~Ds 83 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRV-EPEDA 83 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCC-ChHHC
Confidence 344557889999999999998765 5679999853 11 10 123555544556788999999 79999
Q ss_pred eeEEEEEEcc
Q psy2776 742 GDYKVVATNE 751 (803)
Q Consensus 742 G~Y~C~a~N~ 751 (803)
|.|.|.+.|.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999999864
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.5e-06 Score=71.04 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=57.1
Q ss_pred cceeEEEEEEcCcC------CCeeEEeeCCe----e----ecC----------CCcEEEEe-cCCeEEEEEeeeccCcCe
Q psy2776 523 KSQWKVEVKYFGFP------RPEISWMKNGA----E----ITD----------SKACRIFI-DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 523 g~~v~l~C~~~g~p------~~~v~W~~~g~----~----i~~----------~~~~~~~~-~~~~~~L~i~~v~~~dsG 577 (803)
|++++|.|.+...| ...+.|+|... . +.. ..++.+.. .....+|.|.+++.+|+|
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG 81 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG 81 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence 88999999987663 35699998531 0 111 01222211 123468999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEee
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.+..+.....+.|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 82 RYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEecccceEEEEEEEEEE
Confidence 99999999999999999999865
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.4e-06 Score=73.11 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=53.7
Q ss_pred EEecCCeEEEEEEEeec-CCCceEEeeCCee-----c------------cCCCCeEEEeeC--ceEEEEEecCCCCCCce
Q psy2776 683 TVKEKGTIRLMAKVKAS-PAPSIVWFRNNKP-----L------------LSSPKKREIFDG--ENIILELKEADSETDAG 742 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~-----l------------~~~~~~~~~~~~--~~~~L~i~~v~~~~D~G 742 (803)
.+.+|++++|.|.+.+. +...+.|++.... + ....++.+..+. ..+.|.|.++ +.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v-~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSL-QPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCC-CHHHCE
Confidence 46789999999999876 6678999995321 1 122345444444 5789999999 899999
Q ss_pred eEEEEEEccCc
Q psy2776 743 DYKVVATNELG 753 (803)
Q Consensus 743 ~Y~C~a~N~~G 753 (803)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999998776
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-05 Score=92.18 Aligned_cols=493 Identities=15% Similarity=0.118 Sum_probs=256.7
Q ss_pred CCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeee-eEEEEeccccCCeEEEEEEEEccCc
Q psy2776 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS-TTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 45 ~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
.++..-..+...+.-+-..|..|..+++..+..|+++....+.. .|....... ..-.+.....+.....+|.+.+..+
T Consensus 141 ~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s-~~~~~l~~~~~~s~~~~a~~e~~v~~v~s~gqp~~ 219 (1205)
T KOG0613|consen 141 PPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRS-PWLKRLTQPTDDSTDTDAHYESRVRAVVSAGQPEP 219 (1205)
T ss_pred CCCCCccceeecCceecccccCCccCccceeecceEEEEeccCC-CcccccccccCCcceeccccceeEEEEEecCCCcc
Confidence 33333344455567777889998888888898888887766554 443332211 0111111112222333333322222
Q ss_pred cCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEec
Q psy2776 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203 (803)
Q Consensus 124 ~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~ 203 (803)
...+... ...+.+...++.....+++...|.|.+.+...+.+.|+.+....... .-+..+..|.+
T Consensus 220 ~~~~~~~-----------g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----~~~~~t~~i~~ 284 (1205)
T KOG0613|consen 220 LERWEIL-----------GELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----HKGGNTKTIQN 284 (1205)
T ss_pred chhhhhc-----------ccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc----cCCCccccccc
Confidence 1111111 11122223344455667889999999998888888887765432222 23445788889
Q ss_pred CCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceee
Q psy2776 204 CSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (803)
...++.+.|+|...+..+.....+.-.+........+.....+-..
T Consensus 285 ~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~---------------------------------- 330 (1205)
T KOG0613|consen 285 DGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAAR---------------------------------- 330 (1205)
T ss_pred cCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccC----------------------------------
Confidence 9999999999999998887776655444433211111110000000
Q ss_pred ccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCcee-eEEeecCeeccccceeEEEEcCcee
Q psy2776 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ-VKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~-i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
++-....-..-.......+..+.+.|.. +.+.+. +.|++++.....+........+.
T Consensus 331 -------------------~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-- 389 (1205)
T KOG0613|consen 331 -------------------PPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGT-- 389 (1205)
T ss_pred -------------------CccccccccccceeccccCcceeecccccCCcCCchheeeccccccccccccccccccc--
Confidence 0000000000112223346678888887 665554 88888765554432211111110
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
.-.-.+.|..+...+.+.|.|.
T Consensus 390 ----------------------------------------------------------~ts~~~~~~~~~~~e~~~~~~~ 411 (1205)
T KOG0613|consen 390 ----------------------------------------------------------VTSHTYTIKDAGPGEGYFTRVP 411 (1205)
T ss_pred ----------------------------------------------------------ccCcchhhhhcCcccccccccc
Confidence 0011255677788889999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEe
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~ 521 (803)
|.|..|....... -.++..... ..++. +.-.......+.
T Consensus 412 a~n~~g~~~~~~~---------~~vs~~~~g---------------------------t~~~~-----~kk~~~~t~~L~ 450 (1205)
T KOG0613|consen 412 AVNKGGTEQTIAE---------STVSEEMPG---------------------------TQPPK-----FKKDVSTTDLLT 450 (1205)
T ss_pred eeccCCcccccch---------hhcccccCC---------------------------CCCcc-----cccccccccccc
Confidence 9998888777431 001111100 01110 000000111122
Q ss_pred ecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQ 597 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~ 597 (803)
.-+.+.+.|...+.+.+ .++|++++...... ......+.-.+|.+.-....|.|.|.-......+.. +....+-
T Consensus 451 ~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~--s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~ 528 (1205)
T KOG0613|consen 451 VKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDR--SVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLP 528 (1205)
T ss_pred CCcccccccCCCCccccceeEeeccCCcccccc--cccccccchhhheeeccCCCccchhhhhhhccCCCCCCccccccc
Confidence 23778888888887744 45567766544332 111122234567777778889999965554333332 2222221
Q ss_pred EeeeE--------eEeeecccc------------------------cEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 598 VLGYI--------IQQQEKNSL------------------------KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 598 V~~~p--------~~~~~~~~~------------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
-.... -.......+ .|+...... + ...++-...+...|.++..+.+
T Consensus 529 ~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~-g-tt~t~~~~~p~~~~~~t~~~k~ 606 (1205)
T KOG0613|consen 529 AAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRP-G-TTETIGSILPGHEYHVTIKAKN 606 (1205)
T ss_pred ccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhhhccCCcccccCC-C-cccccccccccccceeehhhhh
Confidence 11111 000000111 122221222 2 6778888999999999999999
Q ss_pred CCCCCCCccceeeeeeeccc-CC------------CCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCe
Q psy2776 646 SVGLGPEATTELVALATHAT-LG------------SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK 711 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~-~~------------~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~ 711 (803)
..|.+.++....+....... +. .....+.++.....+....+.-....|...+.|...+.|.+...
T Consensus 607 ~~gE~~ps~~~~t~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~~~~e~ 685 (1205)
T KOG0613|consen 607 ELGESRPSSKSTTLKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKKKKQEK 685 (1205)
T ss_pred cccccCCCCCCccccccccccccccccCCccccccccccchhcccchhhccccccceeeeeccccCCcccccccccccc
Confidence 99999877311111111110 00 11123334444444555667777788888889999999988644
|
|
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.6e-06 Score=69.83 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=52.2
Q ss_pred cceeEEEEEEcCcCC---CeeEEeeCCe--ee---------cC----C--CcEEEEe---cCCeEEEEEeeeccCcCeEE
Q psy2776 523 KSQWKVEVKYFGFPR---PEISWMKNGA--EI---------TD----S--KACRIFI---DEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 523 g~~v~l~C~~~g~p~---~~v~W~~~g~--~i---------~~----~--~~~~~~~---~~~~~~L~i~~v~~~dsG~Y 579 (803)
|+++.|.|.+.+... ..+.|+|... .+ .. . .|..+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999999864322 3678887541 11 10 0 1222211 12457899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEE
Q psy2776 580 TVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 580 ~C~a~n~~g~~s~s~~l~V 598 (803)
+|.+.|..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887888888876
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.8e-06 Score=69.82 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=53.6
Q ss_pred ceeEEEEEEcCcC---CCeeEEeeCCee---------------ecCCCcEEEEecC---CeEEEEEeeeccCcCeEEEEE
Q psy2776 524 SQWKVEVKYFGFP---RPEISWMKNGAE---------------ITDSKACRIFIDE---ETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 524 ~~v~l~C~~~g~p---~~~v~W~~~g~~---------------i~~~~~~~~~~~~---~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
++++|.|.+...+ ...+.|+|.... +...-+.++.... ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987754 347899985421 0111122222222 457999999999999999999
Q ss_pred EEc-CCCCeEEEEEEEEe
Q psy2776 583 ATN-AAGSTSLDLSLQVL 599 (803)
Q Consensus 583 a~n-~~g~~s~s~~l~V~ 599 (803)
+.+ ..|.....+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 874 67888888888873
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.8e-06 Score=70.70 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=52.2
Q ss_pred eEEecCCeEEEEEEEeecCCC--ceEEeeCCee-----cc--------------CCCCeEEEeeCceEEEEEecCCCCCC
Q psy2776 682 KTVKEKGTIRLMAKVKASPAP--SIVWFRNNKP-----LL--------------SSPKKREIFDGENIILELKEADSETD 740 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~-----l~--------------~~~~~~~~~~~~~~~L~i~~v~~~~D 740 (803)
..+.+|+++.|.|.. .|.. .+.|+|+... |. ...|..+..+ .+|.|+++ +.+|
T Consensus 8 ~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n---gSL~I~~v-~~~D 81 (105)
T cd05774 8 PQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN---GSLLIQNV-TQKD 81 (105)
T ss_pred CcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC---CcEEEecC-Cccc
Confidence 356789999999855 4555 8999996321 10 1223333332 36999999 8999
Q ss_pred ceeEEEEEEccC-cceeeeEEEEE
Q psy2776 741 AGDYKVVATNEL-GSATHGARVTV 763 (803)
Q Consensus 741 ~G~Y~C~a~N~~-G~~~~~~~l~V 763 (803)
+|.|+|.+.|.. ......+.|.|
T Consensus 82 ~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 82 TGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CEEEEEEEEeCCccEEEEEEEEEC
Confidence 999999999987 45455555543
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.1e-06 Score=72.55 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=54.4
Q ss_pred ceeEEecCCeEEEEEEEee--cCCCceEEeeC--Ceec-----------------cCCCCeEEEeeC--ceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKA--SPAPSIVWFRN--NKPL-----------------LSSPKKREIFDG--ENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~--~~~l-----------------~~~~~~~~~~~~--~~~~L~i~~v~ 736 (803)
....+.+|++++|.|.+.+ .+.+.+.|++. |..+ ....++.+..+. ..+.|.|.++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~- 84 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL- 84 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC-
Confidence 3567889999999999987 67788999994 2111 023566666665 6789999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 79999999999975
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=69.48 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=55.7
Q ss_pred ceeEEecCCeEEEEEEEeec----CCCceEEee---------------CCeecc-CC----CCeEEEee--CceEEEEEe
Q psy2776 680 EEKTVKEKGTIRLMAKVKAS----PAPSIVWFR---------------NNKPLL-SS----PKKREIFD--GENIILELK 733 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~---------------~~~~l~-~~----~~~~~~~~--~~~~~L~i~ 733 (803)
.++.+..|+.+.|.|..... +...+.|.+ +|.... .. .|.....+ ....+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 35678889999999999764 335799933 343332 11 23332222 345789999
Q ss_pred cCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 734 EADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
++ +.+|.|.|+|.+.|.-+.......+.+
T Consensus 86 nv-~~sD~G~Y~C~v~n~p~~~~~~~~~~l 114 (116)
T cd05879 86 NL-DYTDNGTFTCDVKNPPDIVGKSSQVTL 114 (116)
T ss_pred cC-CcccCEEEEEEEEcCCCcCCceeEEEE
Confidence 99 899999999999997665544444433
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=68.89 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=52.3
Q ss_pred CeEEEEEEEeecC---CCceEEeeCCee---------------ccCCCCeEEEeeC---ceEEEEEecCCCCCCceeEEE
Q psy2776 688 GTIRLMAKVKASP---APSIVWFRNNKP---------------LLSSPKKREIFDG---ENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 688 ~~v~L~C~~~g~p---~~~v~W~~~~~~---------------l~~~~~~~~~~~~---~~~~L~i~~v~~~~D~G~Y~C 746 (803)
++|+|.|.....+ ...+.|+|.... +..+.+.+....+ ....|.|.++ +.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL-RLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC-CcccCEEEEE
Confidence 4789999997654 347999995421 0111111122222 4678999999 8999999999
Q ss_pred EEEc-cCcceeeeEEEEE
Q psy2776 747 VATN-ELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N-~~G~~~~~~~l~V 763 (803)
.+.+ ..|.....+.|+|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9985 6788888888776
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.6e-06 Score=71.51 Aligned_cols=70 Identities=17% Similarity=0.342 Sum_probs=51.4
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCee--c-----------------cceeEEE--e-cCeeEEEEecCCCC
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL--I-----------------KGRNITY--E-NNVARFTVVNCSES 207 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~--~-----------------~~~~~~~--~-~~~~~L~i~~v~~~ 207 (803)
.|..+.+.+|++++|.|.+.+ +.+.+.|||.... + ...++.. . ....+|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 345677889999999999987 6678999985421 0 0112221 1 13578999999999
Q ss_pred cceEEEEEEEcCC
Q psy2776 208 SEGRYTCKATNEA 220 (803)
Q Consensus 208 d~G~Y~C~a~n~~ 220 (803)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 83 DSAVYLCASSLGG 95 (110)
T ss_pred hCEEEEEEeeCCC
Confidence 9999999998754
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=63.85 Aligned_cols=73 Identities=26% Similarity=0.288 Sum_probs=49.6
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEe-eC--ceEEEEEecCCCCCCceeEEEEEEccCcc-eeeeEEEEE
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF-DG--ENIILELKEADSETDAGDYKVVATNELGS-ATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~-~~--~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 763 (803)
+.|.|.+.|. |.+.+.|++++.++.......... .+ ..++|.|..- .++|...|+|+|.|..=. ...+..|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~-~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVT-KEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECc-hhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 6899999776 888999999999997653221111 11 3466888765 566777799999997632 244444444
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-05 Score=70.31 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.9
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
.+..+|.|.+++.+|.|.|+|........
T Consensus 84 ~gnvsLvI~~l~lSDdGtY~C~fQkge~~ 112 (221)
T PHA03376 84 ANTFFLVVTAANISHDGNYLCRMKLGETE 112 (221)
T ss_pred CCeEEEEEEeeeecCCceEEEEEEcCCCc
Confidence 37788999999999999999999875533
|
|
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=69.85 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCeEEEEEEEeecC----------CCceEEeeCC--eecc--------------CCCCeEEE---eeCceEEEEEecCCC
Q psy2776 687 KGTIRLMAKVKASP----------APSIVWFRNN--KPLL--------------SSPKKREI---FDGENIILELKEADS 737 (803)
Q Consensus 687 g~~v~L~C~~~g~p----------~~~v~W~~~~--~~l~--------------~~~~~~~~---~~~~~~~L~i~~v~~ 737 (803)
|++|+|.|.....+ ...+.|+|.. .... ...|+... .....+.|.|.++ +
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l-~ 80 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRL-R 80 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCC-C
Confidence 89999999997654 2569999952 1110 01232222 1235678999999 8
Q ss_pred CCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 738 ETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+|+|+|.|.+....+.....+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999877778888888854
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-05 Score=69.87 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=50.7
Q ss_pred cceeEEecCCeEEEEEEEeecC----CCceEEeeC----Cee--cc---------CCCCe----EEE--eeCceEEEEEe
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASP----APSIVWFRN----NKP--LL---------SSPKK----REI--FDGENIILELK 733 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~----~~~--l~---------~~~~~----~~~--~~~~~~~L~i~ 733 (803)
+..+.+.+|++++|.|.....+ ...+.|++. +.+ +. ...++ ... .....+.|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4467889999999999986543 235999852 211 10 11122 111 12345789999
Q ss_pred cCCCCCCceeEEEEEEccCcc
Q psy2776 734 EADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
++ +.+|+|.|.|.+.|.-+.
T Consensus 85 ~v-~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QL-QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eC-ChhhCEEEEEEEEeCCCC
Confidence 99 899999999999997664
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=68.47 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred cceeEEEEEEcCcC----------CCeeEEeeC--Ceee------------cCC--CcEEEE---ecCCeEEEEEeeecc
Q psy2776 523 KSQWKVEVKYFGFP----------RPEISWMKN--GAEI------------TDS--KACRIF---IDEETSTIAIYSVVR 573 (803)
Q Consensus 523 g~~v~l~C~~~g~p----------~~~v~W~~~--g~~i------------~~~--~~~~~~---~~~~~~~L~i~~v~~ 573 (803)
|++++|.|.+...+ ...+.|+|. +..+ ... .|+.+. ...+...|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 88999999987654 256899985 2111 011 122221 112457899999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+|+|.|.|.+..........+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998877888889998865
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.5e-06 Score=70.29 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred EEeecceeEEEEEEcCc-CCCeeEEeeCCe-----ee------------cCCCcEEEEecC--CeEEEEEeeeccCcCeE
Q psy2776 519 RLSVKSQWKVEVKYFGF-PRPEISWMKNGA-----EI------------TDSKACRIFIDE--ETSTIAIYSVVRADTST 578 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~-p~~~v~W~~~g~-----~i------------~~~~~~~~~~~~--~~~~L~i~~v~~~dsG~ 578 (803)
.+.+|++++|.|.+.+. +...+.|+|... .+ ....++.+.... ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 36789999999999876 667899998532 11 011334433333 45799999999999999
Q ss_pred EEEEEEcCCC
Q psy2776 579 YTVTATNAAG 588 (803)
Q Consensus 579 Y~C~a~n~~g 588 (803)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=68.66 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=53.9
Q ss_pred CcCeeeecCCcEEEEEEECcc----CCCeeEEEE---------------cCeecc------ceeEEEe----cCeeEEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV----PTPDIKWYK---------------DDSLIK------GRNITYE----NNVARFTV 201 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~----p~p~i~W~~---------------~~~~~~------~~~~~~~----~~~~~L~i 201 (803)
+.++.+..|+.++|.|.+... +..++.|.+ ++.... ..++.+. .+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 355677889999999999753 334799933 222211 0133332 24578999
Q ss_pred ecCCCCcceEEEEEEEcCCcCeeeEEEE
Q psy2776 202 VNCSESSEGRYTCKATNEAGTAETSCTL 229 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 229 (803)
.+++.+|+|.|+|.+.|..+.......+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~~~ 112 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIVGKSSQV 112 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcCCceeEE
Confidence 9999999999999999987754333333
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.9e-06 Score=69.35 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=53.4
Q ss_pred cCCeEEEEEEEee-cCCCceEEeeCCeecc--C-----------CCCe--EEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 686 EKGTIRLMAKVKA-SPAPSIVWFRNNKPLL--S-----------SPKK--REIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 686 ~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~--~-----------~~~~--~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.|++|+|.|.... .....+.|+|+...+. . ++++ +...+.....|.|.++ +.+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~-~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNL-KMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCC-chHHCEEEEEEEE
Confidence 5999999998754 4445799998753221 1 1111 1223455688999999 8999999999999
Q ss_pred ccCcce-eeeEEEEE
Q psy2776 750 NELGSA-THGARVTV 763 (803)
Q Consensus 750 N~~G~~-~~~~~l~V 763 (803)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 988766 45555544
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=67.39 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=50.5
Q ss_pred eeEEecCCeEEEEEEEeec-CCCc--eEEeeCCeeccCCCCeEE--EeeCceEEEEEecCCCCCCce-eEEEEEEccCcc
Q psy2776 681 EKTVKEKGTIRLMAKVKAS-PAPS--IVWFRNNKPLLSSPKKRE--IFDGENIILELKEADSETDAG-DYKVVATNELGS 754 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~-p~~~--v~W~~~~~~l~~~~~~~~--~~~~~~~~L~i~~v~~~~D~G-~Y~C~a~N~~G~ 754 (803)
...+.+|+.++|+|.+.|. |.+. +.||+++..|........ .......+|.+..- .+|.| .|+|+|.+.++.
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~--r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVD--REDHGANFSCETELDLRP 87 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecc--hhhCCcEEEEEEEeccCc
Confidence 3456789999999999774 7776 799999999864321110 01223456777654 45555 899999998876
Q ss_pred e
Q psy2776 755 A 755 (803)
Q Consensus 755 ~ 755 (803)
.
T Consensus 88 ~ 88 (100)
T cd05755 88 E 88 (100)
T ss_pred c
Confidence 4
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.7e-06 Score=68.28 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccC------------------CCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLS------------------SPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~------------------~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
|++|+|.|.....+...+.|++++..... ..|+.+. ....|.|.++ +.+|+|.|.|.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~l-~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY---PNGSLLIQNL-TKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc---CCceEEEccC-CchhcEEEEEEE
Confidence 78999999887766668999997643211 1122222 2367999999 899999999999
Q ss_pred EccCcce-eeeEEE
Q psy2776 749 TNELGSA-THGARV 761 (803)
Q Consensus 749 ~N~~G~~-~~~~~l 761 (803)
.+..|.. ...+.|
T Consensus 77 ~~~~~~~~~~~~~l 90 (92)
T cd05741 77 ISTNGVTENAKFFL 90 (92)
T ss_pred EcCCCcEEEEEEEE
Confidence 9887443 444433
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=68.53 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=54.4
Q ss_pred ecceeEEEEEEcC-cCCCeeEEeeCCeeec--C-----------CCc--EEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 522 VKSQWKVEVKYFG-FPRPEISWMKNGAEIT--D-----------SKA--CRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 522 ~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~--~-----------~~~--~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
+|++|+|.|.... .....+.|+|....+. . ..+ .++....+...|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 5999999998764 4456789998643211 0 011 1233344568999999999999999999998
Q ss_pred CCCCe-EEEEEEEE
Q psy2776 586 AAGST-SLDLSLQV 598 (803)
Q Consensus 586 ~~g~~-s~s~~l~V 598 (803)
..|.. ...+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 87664 56666665
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=67.59 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=50.7
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--------------------eeEEEecCeeEEEEecCCCCcceEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--------------------RNITYENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
..+.+|+++.|.|.....+...+.|+|....... .+... ..+.+|.|.+++.+|+|.|+
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~-~~ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETI-YPNGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEE-eCCCcEEEecCCcccCEEEE
Confidence 3466899999999764333347999996422111 11111 12358999999999999999
Q ss_pred EEEEcCCcC-eeeEEEEE
Q psy2776 214 CKATNEAGT-AETSCTLL 230 (803)
Q Consensus 214 C~a~n~~g~-~~~s~~l~ 230 (803)
|.+.+.... .+....|.
T Consensus 87 ~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 87 LQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEeCCccEEEEEEEEE
Confidence 999998743 33344443
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.3e-05 Score=64.18 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=44.6
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCc----eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~----~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.|.+.|. |.+.+.|+++|+++...........+. .+.|.+... ..++.+.|+|+|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~-~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVD-REDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcc-hhhCCCEEEEEEeChhcCC
Confidence 6899999775 999999999999986443222211221 334556554 3456679999999987654
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=67.73 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=52.0
Q ss_pred EEecCCeEEEEEEEeec--CCCceEEeeCCe--ec------------cCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 683 TVKEKGTIRLMAKVKAS--PAPSIVWFRNNK--PL------------LSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~--p~~~v~W~~~~~--~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+.+|++|+|.|...+. ....+.||+... .+ ...+++....++..+.|.|.++ +.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGA-QTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCC-ChhhCEEEEE
Confidence 46789999999999765 556799998432 11 1134666666677889999999 7999999999
Q ss_pred EEEcc
Q psy2776 747 VATNE 751 (803)
Q Consensus 747 ~a~N~ 751 (803)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 99864
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=68.55 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=50.8
Q ss_pred ceEEeecceeEEEEEEcCcC-CCeeEEeeCC--e---eec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-RPEISWMKNG--A---EIT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-~~~v~W~~~g--~---~i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|++++|.|.+.+.. ...+.|+|.. . .|. ...++..........|.|.++..+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 46789999999999998765 5679999743 1 111 0123444333345689999999999999999
Q ss_pred EEEcC
Q psy2776 582 TATNA 586 (803)
Q Consensus 582 ~a~n~ 586 (803)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 99754
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-05 Score=66.24 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=47.4
Q ss_pred CCcEEEEEEECccCCCeeEEEEcCeeccc-------------------eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 159 QSSVTLECVVSGVPTPDIKWYKDDSLIKG-------------------RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 159 G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
|++|+|.|.....+...+.|++....... .++....+ ..|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence 78999999987656668999986633211 12223333 78999999999999999999988
Q ss_pred CcC
Q psy2776 220 AGT 222 (803)
Q Consensus 220 ~g~ 222 (803)
.+.
T Consensus 80 ~~~ 82 (92)
T cd05741 80 NGV 82 (92)
T ss_pred CCc
Confidence 754
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.04 E-value=3e-05 Score=68.11 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=49.4
Q ss_pred ceEEeecceeEEEEEEcCcCC----CeeEEeeC----Cee--e---cC------CCcE--EEEe----cCCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR----PEISWMKN----GAE--I---TD------SKAC--RIFI----DEETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~----~~v~W~~~----g~~--i---~~------~~~~--~~~~----~~~~~~L~i~~v 571 (803)
.+.+.+|++++|.|.+...++ ..+.|++. +.. + .. ..++ ++.. ..+...|.|.++
T Consensus 7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 578899999999999865432 36899742 111 1 00 1111 1111 123568999999
Q ss_pred ccCcCeEEEEEEEcCCCC
Q psy2776 572 VRADTSTYTVTATNAAGS 589 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~ 589 (803)
+.+|+|.|.|.+.|..+.
T Consensus 87 ~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 87 QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ChhhCEEEEEEEEeCCCC
Confidence 999999999999987664
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=68.94 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=52.1
Q ss_pred ceEEeecceeEEEEEEcC--cCCCeeEEeeC--Ceee------c-----------CCCcEEEEecC--CeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFG--FPRPEISWMKN--GAEI------T-----------DSKACRIFIDE--ETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g--~p~~~v~W~~~--g~~i------~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+ .+.+.+.|+|. |... . ...++.+.... ....|.|.++..
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 567888999999999987 67788999985 2211 0 12445554444 567999999999
Q ss_pred CcCeEEEEEEEc
Q psy2776 574 ADTSTYTVTATN 585 (803)
Q Consensus 574 ~dsG~Y~C~a~n 585 (803)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-05 Score=66.25 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=47.9
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
...|.+|++|+|.|.... +...+.|+|+|.....-........+..+.|.|..+ +.+|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~-~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPV-TPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCC-CcccCEEEEEEEE
Confidence 456889999999998764 556899999887532110000111234668999999 7999999999986
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.8e-05 Score=60.32 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=50.0
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecC---CeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEe
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDE---ETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVL 599 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~ 599 (803)
+.|.|.+.| .|++.|+|+|++.++............ ..++|.|..-..+|...|+|.|.|..-. ...+..|.|+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999765 577899999999999764221111111 1357777666666677999999997532 4555566664
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.8e-05 Score=61.79 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=45.8
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCc------eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~------~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|+|.+.|. |.+.|+|++||.++..... .+..++. .+.|.|... ..+|...|+|+|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~-~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVT-REDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEec-chhCCCEEEEEEECcccCC
Confidence 6799999886 9999999999999865432 2333222 244555554 4567789999999987554
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.4e-05 Score=64.10 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=50.9
Q ss_pred CcCeeeecCCcEEEEEEECc-cCCCe--eEEEEcCeeccceeEEE-----ecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 151 LKDSVAGFQSSVTLECVVSG-VPTPD--IKWYKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
+.+..+.+|+.++|+|.+.| .|.+. |.||+++..+....+.. .....+|.+.--+.+|.-.|+|+|.+..+
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 34455679999999999985 78776 79999999887543221 22345677764444455599999998664
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.7e-05 Score=65.17 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=54.8
Q ss_pred cceeEEEEEEcCcC-------CCeeEEeeCC-----eee------------cCC--CcEEEEec---CCeEEEEEeeecc
Q psy2776 523 KSQWKVEVKYFGFP-------RPEISWMKNG-----AEI------------TDS--KACRIFID---EETSTIAIYSVVR 573 (803)
Q Consensus 523 g~~v~l~C~~~g~p-------~~~v~W~~~g-----~~i------------~~~--~~~~~~~~---~~~~~L~i~~v~~ 573 (803)
|++++|.|.+.-.| .+.+.|.|.. ..+ ..+ .|..+... .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999976333 3688998741 111 011 12222211 2467999999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+|+|.|.|.+..........+.|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999877788888888865
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.5e-05 Score=67.29 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=49.9
Q ss_pred cceeEEecCCeEEEEEEEeecC----CCceEEeeCCe------ecc----------CCCCe----EEEe--eCceEEEEE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASP----APSIVWFRNNK------PLL----------SSPKK----REIF--DGENIILEL 732 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~~~------~l~----------~~~~~----~~~~--~~~~~~L~i 732 (803)
+....+.+|++++|.|...... ...+.|++... .+. ...++ .... ....+.|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4456788999999999986532 14599987321 110 11111 1111 123578999
Q ss_pred ecCCCCCCceeEEEEEEccCcc
Q psy2776 733 KEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.++ +.+|+|.|.|.+.|.-+.
T Consensus 85 ~~v-~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNL-QFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeC-CcccCEEEEEEEEeCCCC
Confidence 999 899999999999987554
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.5e-05 Score=60.79 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=44.9
Q ss_pred eEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCe------EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 526 WKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEET------STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 526 v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~------~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
+.|+|.+.|. |.+.|+|+++|+.+..... .+...+++ +.|.|.....+|...|+|+|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 5799999875 8899999999998876432 23223222 34555555566778999999998644
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=66.09 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=49.1
Q ss_pred ecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC-eEEE--eeCc---eEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 685 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK-KREI--FDGE---NIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~-~~~~--~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..|+.+.|.|.+.|+ |. +.++|+++|.++..... .... .++. .+.|.|... ..+|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~-~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPS-DWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHH-HhCCCCCEEEEEEeCCCC
Confidence 468999999999998 64 58999999999876543 1111 2222 234556554 345999999999997765
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.1e-05 Score=66.92 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=48.7
Q ss_pred ceEEeecceeEEEEEEcCcC----CCeeEEeeCCe------ee---------c-CCCc----EEEEe--cCCeEEEEEee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP----RPEISWMKNGA------EI---------T-DSKA----CRIFI--DEETSTIAIYS 570 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p----~~~v~W~~~g~------~i---------~-~~~~----~~~~~--~~~~~~L~i~~ 570 (803)
...+.+|+.++|.|.+.... ...+.|++... .+ . ...+ ..+.. ..+...|+|.+
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN 86 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence 46788999999999986542 24689976321 11 0 0111 11111 12347899999
Q ss_pred eccCcCeEEEEEEEcCCCC
Q psy2776 571 VVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~ 589 (803)
++.+|+|.|.|.+.|..+.
T Consensus 87 v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 87 LQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CCcccCEEEEEEEEeCCCC
Confidence 9999999999999987554
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-05 Score=66.05 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=49.7
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..|+.+.|.|.+.|+ |. +.++|+++|..+..... .......+ .+.|.|......|.|.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 458899999999998 54 68999999998876543 22222222 235666666667999999999997654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.1e-05 Score=65.73 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=57.9
Q ss_pred cceeEEecCCeEEEEEEEe-ecCCCceEEeeCCe-----ecc--------------CCCCeEEEee--CceEEEEEecCC
Q psy2776 679 FEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNK-----PLL--------------SSPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~-----~l~--------------~~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
+....+.+|+++.|.|... ......+.|++... .+. ...+.....+ ...+.|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l- 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL- 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE-
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC-
Confidence 4567899999999999998 44566899999432 111 1122333333 34788999999
Q ss_pred CCCCceeEEEEEEcc-CcceeeeEEEEE
Q psy2776 737 SETDAGDYKVVATNE-LGSATHGARVTV 763 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~-~G~~~~~~~l~V 763 (803)
+.+|+|.|.|.+... .+.....+.|+|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 899999999999987 333344444443
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.8e-05 Score=68.04 Aligned_cols=86 Identities=22% Similarity=0.167 Sum_probs=63.6
Q ss_pred ceEEeecceeEEEEEEc-CcCCCeeEEeeCCeee----------cCC--CcEEE-EecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEI----------TDS--KACRI-FIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i----------~~~--~~~~~-~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...|.+|++++|.|... +...+.+.|.|....+ .++ .|+.+ ......+.|+|.+++.+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 46789999999999984 6667889999864322 222 23332 2223457999999999999999998
Q ss_pred EE-cCCC-CeEEEEEEEEeeeE
Q psy2776 583 AT-NAAG-STSLDLSLQVLGYI 602 (803)
Q Consensus 583 a~-n~~g-~~s~s~~l~V~~~p 602 (803)
.. -+.| ..+....|.|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 85 4566 78889999998753
|
|
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.5e-05 Score=60.48 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=42.6
Q ss_pred eEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 526 WKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 526 v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
+.|+|.+.+. |.+.++|+++|.++.... .......+ .+.|.+.....++.+.|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899998765 889999999999886433 11111111 234555444455667999999998654
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=62.48 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=55.7
Q ss_pred cceeEEEEEEcCcC-----------CCeeEEeeC-----Ce-----ee--c--------CC--CcEEEEe---cCCeEEE
Q psy2776 523 KSQWKVEVKYFGFP-----------RPEISWMKN-----GA-----EI--T--------DS--KACRIFI---DEETSTI 566 (803)
Q Consensus 523 g~~v~l~C~~~g~p-----------~~~v~W~~~-----g~-----~i--~--------~~--~~~~~~~---~~~~~~L 566 (803)
|.+++|.|.+.-.| ...|+|.+- |. .+ . .. .|..+.. ..+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999987444 248999873 11 11 0 01 1222221 1245899
Q ss_pred EEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 567 ~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999988889999998865
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=58.07 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=52.6
Q ss_pred eeeecCCcEEEEEEECccC--CCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVP--TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
..+..|++++|.|...+.+ .+.|.|..++... ......+..+|.+.++...|+|.++|.+.-..-.....+++.|
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~---~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKS---KQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcc---ceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 3567899999999997544 4489998765331 1112235678999999999999999999855333334444444
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.8e-05 Score=63.99 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=53.5
Q ss_pred CCcEEEEEEECccC-------CCeeEEEEcC-----eecc---------------ceeEEEec-----CeeEEEEecCCC
Q psy2776 159 QSSVTLECVVSGVP-------TPDIKWYKDD-----SLIK---------------GRNITYEN-----NVARFTVVNCSE 206 (803)
Q Consensus 159 G~~~~L~C~~~g~p-------~p~i~W~~~~-----~~~~---------------~~~~~~~~-----~~~~L~i~~v~~ 206 (803)
|++++|.|.+.-.| .+.|.|.|.. .... .+++.+.. +..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999965322 3579998751 1110 11333322 467999999999
Q ss_pred CcceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 207 SSEGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
+|+|.|+|.+.......+..+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999777777788888764
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.7e-05 Score=63.16 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=50.5
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE---EEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI---TYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
|.+...+ ...|.+|++++|+|.... +...+.|+|++........ ........+.|.+++.+|+|.|+|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 3444433 355779999999998764 5557999998865432110 1122345789999999999999998763
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.8e-05 Score=64.34 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=49.4
Q ss_pred EeecceeEEEEEEcCc--CCCeeEEeeCCe--ee---c---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 520 LSVKSQWKVEVKYFGF--PRPEISWMKNGA--EI---T---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~--p~~~v~W~~~g~--~i---~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
+.+|++++|.|.+.+. ....+.|+|... .. . ...++..........|.|.+++.+|+|.|.|.+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence 5789999999998765 456799987432 11 0 013555555556678999999999999999998
Q ss_pred EcC
Q psy2776 584 TNA 586 (803)
Q Consensus 584 ~n~ 586 (803)
.+.
T Consensus 83 ~~~ 85 (98)
T cd04984 83 WDS 85 (98)
T ss_pred ccC
Confidence 753
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=62.53 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=51.3
Q ss_pred eeEEEEEEcCcC---CCeeEEeeCCe-----eec-----------CC--CcEEEEe--cCCeEEEEEeeeccCcCeEEEE
Q psy2776 525 QWKVEVKYFGFP---RPEISWMKNGA-----EIT-----------DS--KACRIFI--DEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 525 ~v~l~C~~~g~p---~~~v~W~~~g~-----~i~-----------~~--~~~~~~~--~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
+++|.|.....+ ...+.|+|... .+. .. .|.++.. ......|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999987544 34789998421 110 00 2233322 2235789999999999999999
Q ss_pred EEEc-CCCCeEEEEEEEE
Q psy2776 582 TATN-AAGSTSLDLSLQV 598 (803)
Q Consensus 582 ~a~n-~~g~~s~s~~l~V 598 (803)
.+.+ +.|.....+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 7787778888876
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.8e-05 Score=62.93 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=51.0
Q ss_pred eEEecCCeEEEEEEEee-cCCCceEEeeCCee-----c--------cCCCCeEEEee--CceEEEEEecCCCCCCceeEE
Q psy2776 682 KTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKP-----L--------LSSPKKREIFD--GENIILELKEADSETDAGDYK 745 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~-----l--------~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
+.+.+|++++|.|.... .+...+.|++.... | ....++.+..+ ...+.|.|.++ +.+|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQL-RKEDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCC-CHHHCEEEE
Confidence 35788999999999875 35567999986421 1 12344554332 45688999999 899999999
Q ss_pred EEEEccC
Q psy2776 746 VVATNEL 752 (803)
Q Consensus 746 C~a~N~~ 752 (803)
|.+.+..
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9998754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=60.87 Aligned_cols=71 Identities=23% Similarity=0.456 Sum_probs=49.7
Q ss_pred cEEEEEEECcc-CCC---eeEEEEcCe----ec---c-----------ceeEEEec---CeeEEEEecCCCCcceEEEEE
Q psy2776 161 SVTLECVVSGV-PTP---DIKWYKDDS----LI---K-----------GRNITYEN---NVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 161 ~~~L~C~~~g~-p~p---~i~W~~~~~----~~---~-----------~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
.++|.|..... |.. +|.|.+... .+ + ..++.+.+ +..+|.|.|++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68899998742 211 599987421 11 0 01223222 347899999999999999999
Q ss_pred EEc-CCcCeeeEEEEEE
Q psy2776 216 ATN-EAGTAETSCTLLV 231 (803)
Q Consensus 216 a~n-~~g~~~~s~~l~V 231 (803)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7788788888877
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=60.67 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=52.6
Q ss_pred ceeEEEEEEcCcCC-CeeEEeeCC----eeec-----------CC--CcEEEE-ecCCeEEEEEeeeccCcCeEEEEEE-
Q psy2776 524 SQWKVEVKYFGFPR-PEISWMKNG----AEIT-----------DS--KACRIF-IDEETSTIAIYSVVRADTSTYTVTA- 583 (803)
Q Consensus 524 ~~v~l~C~~~g~p~-~~v~W~~~g----~~i~-----------~~--~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a- 583 (803)
++++|.|.....+. ..++|.|.. ..+. .. .|..+. ......+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36899999875333 578998742 1111 11 122221 1223579999999999999999997
Q ss_pred EcCCCCeEEEEEEEEe
Q psy2776 584 TNAAGSTSLDLSLQVL 599 (803)
Q Consensus 584 ~n~~g~~s~s~~l~V~ 599 (803)
..+.|....+..|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 5779999999999873
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=61.16 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=50.3
Q ss_pred eeEEEEEEcCc-CCC---eeEEeeCCe----ee-----------cCC--CcEEEE-ecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 525 QWKVEVKYFGF-PRP---EISWMKNGA----EI-----------TDS--KACRIF-IDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 525 ~v~l~C~~~g~-p~~---~v~W~~~g~----~i-----------~~~--~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
.++|.|.+... |.. .|.|.+... .+ ... .|..+. ......+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 57899998743 222 689987421 11 111 111111 112347899999999999999999
Q ss_pred EEc-CCCCeEEEEEEEE
Q psy2776 583 ATN-AAGSTSLDLSLQV 598 (803)
Q Consensus 583 a~n-~~g~~s~s~~l~V 598 (803)
+.| +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7888888888887
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00016 Score=61.40 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=52.2
Q ss_pred cceeEEEEEEcCcCC-CeeEEeeCCe----eec-----------CC--CcEEEE-ecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPR-PEISWMKNGA----EIT-----------DS--KACRIF-IDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 523 g~~v~l~C~~~g~p~-~~v~W~~~g~----~i~-----------~~--~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
|++++|.|....... -.+.|+|... .+. .. .+..+. .......|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999765443 3689998431 110 00 111111 1123578999999999999999998
Q ss_pred E-cCCCCeEEEEEEEE
Q psy2776 584 T-NAAGSTSLDLSLQV 598 (803)
Q Consensus 584 ~-n~~g~~s~s~~l~V 598 (803)
. .+.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 66888888888887
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=63.58 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=55.3
Q ss_pred ceEEeecceeEEEEEEc-CcCCCeeEEeeCCe-----eec---C-----------CCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYF-GFPRPEISWMKNGA-----EIT---D-----------SKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~-----~i~---~-----------~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|... ......+.|++... .+. . ..+..+... ....+|.|.+++.+
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 57789999999999998 44556899998422 111 0 012222222 23578999999999
Q ss_pred cCeEEEEEEEcC-CCCeEEEEEEEE
Q psy2776 575 DTSTYTVTATNA-AGSTSLDLSLQV 598 (803)
Q Consensus 575 dsG~Y~C~a~n~-~g~~s~s~~l~V 598 (803)
|+|.|.|.+... .......+.|.|
T Consensus 90 DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 90 DSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999876 233344444443
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.5e-05 Score=65.25 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=53.5
Q ss_pred ccceeEEecCCeEEEEEEEeec-CCCceEEeeCC--ee---c---------cCCCCeEEEe--eCceEEEEEecCCCCCC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN--KP---L---------LSSPKKREIF--DGENIILELKEADSETD 740 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~--~~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~~D 740 (803)
.+..+.+.+|++|+|.|...+. ....+.|++.. .. + ...+|+.+.. ....+.|.|.++ +.+|
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~-~~~D 83 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISAL-QLED 83 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCC-CHHH
Confidence 3446778999999999998754 45679999842 11 0 1235565543 345788999999 8999
Q ss_pred ceeEEEEEEcc
Q psy2776 741 AGDYKVVATNE 751 (803)
Q Consensus 741 ~G~Y~C~a~N~ 751 (803)
+|.|.|.+.+.
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999953
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=61.42 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=51.1
Q ss_pred eEEEEEEEeecC---CCceEEeeCCe-----ec---c--------C--CCCeEEEe--eCceEEEEEecCCCCCCceeEE
Q psy2776 689 TIRLMAKVKASP---APSIVWFRNNK-----PL---L--------S--SPKKREIF--DGENIILELKEADSETDAGDYK 745 (803)
Q Consensus 689 ~v~L~C~~~g~p---~~~v~W~~~~~-----~l---~--------~--~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
+|+|.|.....+ ...+.|+|... .+ . . .+|..... ......|.|.++ +.+|+|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv-~~sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNA-VQADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecC-ccccceEEE
Confidence 688999986544 33799998321 11 0 0 12333332 223567999999 899999999
Q ss_pred EEEEc-cCcceeeeEEEEE
Q psy2776 746 VVATN-ELGSATHGARVTV 763 (803)
Q Consensus 746 C~a~N-~~G~~~~~~~l~V 763 (803)
|.+.| ..|..++.+.|+|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99999 7788777777776
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=67.01 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=64.7
Q ss_pred ceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeecc----------C--CCCeE-EEeeCceEEEEEecCCCCCCceeEE
Q psy2776 680 EEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLL----------S--SPKKR-EIFDGENIILELKEADSETDAGDYK 745 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~----------~--~~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
...+|.+|++|+|.|... +...+.++|+|.+..+. + .+|+. +...-....|.|+++ ..+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknV-t~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNV-SLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeC-ChhhCeEEE
Confidence 357889999999999984 55677899999743322 1 12333 223334578999999 799999999
Q ss_pred EEEEc-cCc-ceeeeEEEEEEeeccC
Q psy2776 746 VVATN-ELG-SATHGARVTVDVEKVG 769 (803)
Q Consensus 746 C~a~N-~~G-~~~~~~~l~V~~~~~~ 769 (803)
|...- ..| ..+..+.|.|+.+...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~~~~ 127 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTDSYT 127 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEchhhc
Confidence 99875 346 7788889999765444
|
|
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=61.12 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=49.5
Q ss_pred CCcEEEEEEECccCC-CeeEEEEcCee----cc--------------ceeEEE---ecCeeEEEEecCCCCcceEEEEEE
Q psy2776 159 QSSVTLECVVSGVPT-PDIKWYKDDSL----IK--------------GRNITY---ENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 159 G~~~~L~C~~~g~p~-p~i~W~~~~~~----~~--------------~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
|++++|.|....... -.+.|+|.... +. ..+... .....+|+|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999765332 25999985321 10 001111 124577999999999999999998
Q ss_pred Ec-CCcCeeeEEEEEE
Q psy2776 217 TN-EAGTAETSCTLLV 231 (803)
Q Consensus 217 ~n-~~g~~~~s~~l~V 231 (803)
.. +.|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 5566666677776
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00031 Score=60.72 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCeEEEEEEEeecCC-----------CceEEeeC-----Ce-----ec--cC----------CCCeEEEee---CceEEE
Q psy2776 687 KGTIRLMAKVKASPA-----------PSIVWFRN-----NK-----PL--LS----------SPKKREIFD---GENIIL 730 (803)
Q Consensus 687 g~~v~L~C~~~g~p~-----------~~v~W~~~-----~~-----~l--~~----------~~~~~~~~~---~~~~~L 730 (803)
|++++|.|...-.|. +.|.|++- |. .+ .. ..|..+..+ .....|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 688999999885542 36999873 11 11 01 112222211 245889
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|.++ +..|+|.|.|.+.+........+.|.|.+
T Consensus 82 ~i~~v-~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKL-RASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEccc-ccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 99999 79999999999999999999999999864
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00018 Score=57.75 Aligned_cols=77 Identities=12% Similarity=0.272 Sum_probs=55.0
Q ss_pred eEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
..+..|++++|+|...+.+. +.++|.-.+...-. ....+..+|.+..+...|+|.++|.++...-.....+.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 35788999999999866444 49999865433211 11235679999999999999999999765444556666
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
+.|.+
T Consensus 83 V~Vl~ 87 (88)
T cd07694 83 IKVLA 87 (88)
T ss_pred EEEEe
Confidence 66643
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=63.46 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=48.0
Q ss_pred EEecCCeEEEEEEEeecC-CCceEEeeCCee-----c------c-----------CCCCeEEE--eeCceEEEEEecCCC
Q psy2776 683 TVKEKGTIRLMAKVKASP-APSIVWFRNNKP-----L------L-----------SSPKKREI--FDGENIILELKEADS 737 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p-~~~v~W~~~~~~-----l------~-----------~~~~~~~~--~~~~~~~L~i~~v~~ 737 (803)
.+.+|++++|.|.+.+.. ...+.||+...- + . ...++... .+...+.|.|.++ +
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV-K 80 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC-C
Confidence 467899999999987643 457999985321 0 0 02344332 2345678999999 8
Q ss_pred CCCceeEEEEEEcc
Q psy2776 738 ETDAGDYKVVATNE 751 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~ 751 (803)
.+|+|.|.|...+.
T Consensus 81 ~~Dsg~YyCa~~~~ 94 (107)
T cd07700 81 PEDSGTYFCMTVGS 94 (107)
T ss_pred HHHCEEEEEeEcCC
Confidence 99999999998743
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=63.43 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=48.4
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCe----e---cc---C------------CCCeEEEeeCceEEEEEecCCCCCC
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNK----P---LL---S------------SPKKREIFDGENIILELKEADSETD 740 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~----~---l~---~------------~~~~~~~~~~~~~~L~i~~v~~~~D 740 (803)
.+.+|++|+|.|...+.-...+.|++... . |. . ..++....+...+.|.|.++ +.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNF-QKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCC-CHHH
Confidence 36789999999998655455799998532 1 10 0 22344434457788999999 7999
Q ss_pred ceeEEEEEEc
Q psy2776 741 AGDYKVVATN 750 (803)
Q Consensus 741 ~G~Y~C~a~N 750 (803)
+|.|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999999875
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00047 Score=59.65 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=46.6
Q ss_pred EEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEE-EeeC----ceEEEEEecCCCCCCcee-EEEEEEccCcc
Q psy2776 683 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKRE-IFDG----ENIILELKEADSETDAGD-YKVVATNELGS 754 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~-~~~~----~~~~L~i~~v~~~~D~G~-Y~C~a~N~~G~ 754 (803)
++..|+.++|.|.+.|+ |. ..++|++||+++........ ..++ ..+.|.+.. ...|.|. |+|.+......
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~--~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL--TEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC--ccccccCceEEEEEeCCCC
Confidence 45578899999999886 64 58999999999864322111 1122 134465654 3455554 99999986544
Q ss_pred e
Q psy2776 755 A 755 (803)
Q Consensus 755 ~ 755 (803)
.
T Consensus 95 ~ 95 (111)
T cd05772 95 A 95 (111)
T ss_pred C
Confidence 3
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=58.51 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=43.7
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEee--C---ceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFD--G---ENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~--~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
++|.|.+.|+ |...++|++||.++........... + ..+.|.+..- ..+|...|+|+|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~-~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVD-RSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcc-cccCCCEEEEEEechhcC
Confidence 6899999885 8889999999999864432222111 1 2345666654 355677899999997654
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=58.31 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=43.5
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
++|+|.+.| +|++.++|+|+|..+............+ .+.|.|..-..+|...|+|.|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999987 5778999999999986543222221111 245666554556677999999987544
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00025 Score=60.35 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=49.5
Q ss_pred eEEeecceeEEEEEEcC-cCCCeeEEeeCCe-----ee--------cCCCcEEEEec--CCeEEEEEeeeccCcCeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFG-FPRPEISWMKNGA-----EI--------TDSKACRIFID--EETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~-----~i--------~~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C 581 (803)
..+.+|++++|.|.+.. .....+.|+|... .+ ....++.+... .....|.|.++..+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35788999999999875 3456789998542 11 01134444322 345789999999999999999
Q ss_pred EEEcCC
Q psy2776 582 TATNAA 587 (803)
Q Consensus 582 ~a~n~~ 587 (803)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00024 Score=55.58 Aligned_cols=65 Identities=29% Similarity=0.514 Sum_probs=48.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCe----EEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKK----REIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~----~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.|.+.+.+...+.|++++......... ..........|.|.++ ...|+|.|.|.+.+..+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~ 69 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNV-TLEDSGTYTCVASNSAGTV 69 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECcc-CcccCcEEEEEEecCcCcE
Confidence 468999998788899999998776543321 1112244667999999 7899999999999887443
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00044 Score=57.93 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=51.1
Q ss_pred CeEEEEEEEeecCC-CceEEeeCC----eecc-------------CCCCeEEE-eeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 688 GTIRLMAKVKASPA-PSIVWFRNN----KPLL-------------SSPKKREI-FDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 688 ~~v~L~C~~~g~p~-~~v~W~~~~----~~l~-------------~~~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
++++|.|.....+. ..|+|.|-. ..+. ...|.... ......+|.|.++ +.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv-~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENV-GFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCC-CccccEEEEEEE
Confidence 46899999874333 379998842 1111 01122221 1233568999999 799999999997
Q ss_pred Ec-cCcceeeeEEEEE
Q psy2776 749 TN-ELGSATHGARVTV 763 (803)
Q Consensus 749 ~N-~~G~~~~~~~l~V 763 (803)
.+ ..|+.++++.|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 65 7899999888887
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=62.63 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=49.8
Q ss_pred cCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCe--e---c----------cceeEEEe----cCeeEEEEecCCCCcc
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDS--L---I----------KGRNITYE----NNVARFTVVNCSESSE 209 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~--~---~----------~~~~~~~~----~~~~~L~i~~v~~~d~ 209 (803)
.+..+.+.+|++++|.|..... ....+.|+|... . + ...++... .+..+|+|.+++.+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3456778899999999998753 445699998431 1 0 01233322 2457899999999999
Q ss_pred eEEEEEEEcC
Q psy2776 210 GRYTCKATNE 219 (803)
Q Consensus 210 G~Y~C~a~n~ 219 (803)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999999853
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00063 Score=58.87 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=51.1
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC------eEEEEEee
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE------TSTIAIYS 570 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~------~~~L~i~~ 570 (803)
|..+|..|.+... ...+..|+.++|.|.+.|+ |. ..++|+|||+.+..... ......+ .+.|.+..
T Consensus 2 v~~~P~~p~i~~~-----~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~ 75 (111)
T cd05772 2 VRAKPSVPVVSGP-----SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL 75 (111)
T ss_pred cccCCCCcEeCCc-----hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC
Confidence 3455655544321 2334568889999999886 53 58999999999865322 1111111 23444443
Q ss_pred eccCcCe-EEEEEEEcCCCC
Q psy2776 571 VVRADTS-TYTVTATNAAGS 589 (803)
Q Consensus 571 v~~~dsG-~Y~C~a~n~~g~ 589 (803)
...|.| .|+|.+.+....
T Consensus 76 -~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 76 -TEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred -ccccccCceEEEEEeCCCC
Confidence 445545 599999987543
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00054 Score=60.66 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=49.6
Q ss_pred cceeEEecCCeEEEEEEEeecC------CCceEEeeCCe------ecc-----------CCCCeEEE--eeCceEEEEEe
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASP------APSIVWFRNNK------PLL-----------SSPKKREI--FDGENIILELK 733 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p------~~~v~W~~~~~------~l~-----------~~~~~~~~--~~~~~~~L~i~ 733 (803)
|..+.+.+|+.|+|.|...... ...+.||+... ++. ..+|+... .....+.|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4457788999999999875221 24589998532 110 11244432 23556889999
Q ss_pred cCCCCCCceeEEEEEEcc
Q psy2776 734 EADSETDAGDYKVVATNE 751 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~ 751 (803)
++ +.+|+|.|.|.+...
T Consensus 86 ~l-~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DA-QPEDSGKYFFRVELG 102 (119)
T ss_pred cC-ChhhCeEEEEEEEcC
Confidence 99 899999999998763
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00059 Score=57.32 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCeEEEEEEEeec-CCC-ceEEeeCCeeccCCC---CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 687 KGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSP---KKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 687 g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~---~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|+.++|.|.+.|+ |.. .++|+++|..+..+. ......++.........+ ...+.+.|+|.+.+..-.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v-~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV-PPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE-CCCCCCEEEEEEEeCCCC
Confidence 7789999999997 554 899999996443222 222122333323333333 456889999999986543
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00036 Score=60.07 Aligned_cols=66 Identities=8% Similarity=0.150 Sum_probs=46.4
Q ss_pred EeecceeEEEEEEcCcCCCeeEEeeCCee-------e---cC------------CCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAE-------I---TD------------SKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~~~v~W~~~g~~-------i---~~------------~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
+.+|++++|.|.+.......+.|+|.... | .. ..++..........|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 57799999999986654567999985321 1 00 12233323345578999999999999
Q ss_pred EEEEEEEc
Q psy2776 578 TYTVTATN 585 (803)
Q Consensus 578 ~Y~C~a~n 585 (803)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998864
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00033 Score=60.67 Aligned_cols=64 Identities=16% Similarity=0.366 Sum_probs=44.2
Q ss_pred eeecCCcEEEEEEECcc-CCCeeEEEEcCee---c--------c------------ceeEEE--e--cCeeEEEEecCCC
Q psy2776 155 VAGFQSSVTLECVVSGV-PTPDIKWYKDDSL---I--------K------------GRNITY--E--NNVARFTVVNCSE 206 (803)
Q Consensus 155 ~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~---~--------~------------~~~~~~--~--~~~~~L~i~~v~~ 206 (803)
.+.+|++++|.|...+. ....+.||+.... . . ..++.. . .....|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998653 3346999984431 0 0 111211 1 2345799999999
Q ss_pred CcceEEEEEEEc
Q psy2776 207 SSEGRYTCKATN 218 (803)
Q Consensus 207 ~d~G~Y~C~a~n 218 (803)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998763
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00049 Score=53.76 Aligned_cols=63 Identities=33% Similarity=0.472 Sum_probs=46.8
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcE----EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKAC----RIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~----~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
+.|.|.+.+.+...+.|++++......... ..........|.|.++...|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 468999998777899999988765543211 111222357899999999999999999988763
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00069 Score=59.66 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=49.5
Q ss_pred ceeEEecCCeEEEEEEEeecC--CCceEEeeCC---ee--c---c-----------CCCCeEEEeeC--ceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASP--APSIVWFRNN---KP--L---L-----------SSPKKREIFDG--ENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~---~~--l---~-----------~~~~~~~~~~~--~~~~L~i~~v~ 736 (803)
....+.+|++|+|.|...+.- ...+.||+.. .+ | . ..+++....+. ..+.|.|.++
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~- 83 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL- 83 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC-
Confidence 356788999999999986543 4569999842 22 1 0 12345444443 3568999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 89999999999875
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00076 Score=59.70 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=48.0
Q ss_pred CcCeeeecCCcEEEEEEECccC------CCeeEEEEcCee------c---c---------ceeEEE----ecCeeEEEEe
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP------TPDIKWYKDDSL------I---K---------GRNITY----ENNVARFTVV 202 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p------~p~i~W~~~~~~------~---~---------~~~~~~----~~~~~~L~i~ 202 (803)
|..+.+.+|+.++|.|.....+ ...+.|++.... + . ..++.. ..+..+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4556788999999999875321 235899985421 0 0 012333 2345789999
Q ss_pred cCCCCcceEEEEEEEcC
Q psy2776 203 NCSESSEGRYTCKATNE 219 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~ 219 (803)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=55.33 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=43.8
Q ss_pred CCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeE-EEeeCc----eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 687 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKR-EIFDGE----NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 687 g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
|+.+.|+|.+ .|.|.|.+.|+.++..+....... ...++. .++|.+..- ..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~-~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPT-REDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETT-GGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcC-hHHCCeEEEEEEECCccCC
Confidence 7899999976 567999999999998872111111 111111 345666654 3456677999999986543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.02 Score=59.43 Aligned_cols=82 Identities=12% Similarity=0.247 Sum_probs=55.2
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|.|.+++...+|.|+=...+..+...... .+.+...-
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~----------------------------------------~VtV~~yr 220 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGT----------------------------------------WTRVRMFR 220 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeee----------------------------------------EEEEEEec
Confidence 45699999999999999998776654333211 23333333
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeecC
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEITD 551 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~~ 551 (803)
+|.... ....+.+|+...-+|.+..+ |+ ..+.|++||.++..
T Consensus 221 ~Psvsv--------~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 221 RPSLSI--------RPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred CCcccc--------cCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 443211 12346789999999998765 44 36889999998864
|
|
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=53.87 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=47.1
Q ss_pred ceeEEEEEEcCc-CCCeeEEeeCCe----ee-----------cCC--CcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 524 SQWKVEVKYFGF-PRPEISWMKNGA----EI-----------TDS--KACRIFI-DEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 524 ~~v~l~C~~~g~-p~~~v~W~~~g~----~i-----------~~~--~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
++++|.|..... ....+.|.|... .+ ... .|..... .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 368899997642 235788988421 11 111 1222211 1234789999999999999999996
Q ss_pred c-CCCCeEEEEEE
Q psy2776 585 N-AAGSTSLDLSL 596 (803)
Q Consensus 585 n-~~g~~s~s~~l 596 (803)
+ +.|...+.+.|
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 57777776665
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.055 Score=55.90 Aligned_cols=217 Identities=12% Similarity=0.146 Sum_probs=112.8
Q ss_pred eEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEEC
Q psy2776 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169 (803)
Q Consensus 90 ~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~ 169 (803)
.|.......-.+.|.++...++|.|++...+............+.+. .++|.+...+. .+.+|+...=.|.+.
T Consensus 198 i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~-----~RPPsVsV~a~--PVL~Ge~YkAtC~vA 270 (490)
T PHA03271 198 IWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC-----QRPASVDVLAP--PVLSGENYKASCIVR 270 (490)
T ss_pred EeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE-----ecCCCccccCC--ccccCCCceEEEEee
Confidence 44444445678999999999999887665554333222222222222 45665555433 367899999999998
Q ss_pred cc-CCC--eeEEEEcCeecccee---EEE---ec-----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeee
Q psy2776 170 GV-PTP--DIKWYKDDSLIKGRN---ITY---EN-----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235 (803)
Q Consensus 170 g~-p~p--~i~W~~~~~~~~~~~---~~~---~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~ 235 (803)
.+ |+- .+.|+.||..+.... ... ++ ..++|.+.+...+.-=..+|.+.-..+....+. .-...|
T Consensus 271 nYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP 348 (490)
T PHA03271 271 HFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIP 348 (490)
T ss_pred eecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCC
Confidence 74 333 499999998775322 111 11 123444444333333478999987655333322 111111
Q ss_pred -cccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce---eeeeeccCCCcccccccc
Q psy2776 236 -IKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA---WFWWFESKSTPAVEFLSK 311 (803)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 311 (803)
+-..+...+.. +.|+-.|.+.=.+..-.++|+.+.......+. ....+..+ +....+-.
T Consensus 349 ~VY~~P~ISv~F---------------edG~AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~er-PGlVNLrS- 411 (490)
T PHA03271 349 TVYHHPRISLAF---------------KDGYAICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTI-DRHRNLIS- 411 (490)
T ss_pred ccccCCeEEEEE---------------eCCEEEEeccccCCCcEEEEEecCCCCCCcccccccccccCCC-CCceeeec-
Confidence 11122222222 23445555554444557788777665433211 11111111 11111111
Q ss_pred CCceeeeccccceeEEEEe-cCCc
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~ 334 (803)
.......++.+..+|++ |.|.
T Consensus 412 --~lPlSd~dgpveYTCrL~GYP~ 433 (490)
T PHA03271 412 --RIPVQDNWQKTKYTCRLIGYPF 433 (490)
T ss_pred --cCCchhcCCceeEEEEEeecCC
Confidence 11122235779999999 8774
|
|
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0038 Score=52.33 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=44.5
Q ss_pred ecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCC---CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 685 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSP---KKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~---~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..|+.++|.|.+.|+ |.. .+.|++||.++..+. ......++.........+ ...+...|+|.+.-....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~-~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET-TPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE-cCCCCCEEEEEEEeCCCC
Confidence 358899999999996 655 789999999876541 111112233333233333 345677899999976544
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0027 Score=52.82 Aligned_cols=64 Identities=31% Similarity=0.530 Sum_probs=44.3
Q ss_pred CCcEEEEEEEC-ccCCCeeEEEEcCeecccee--EEEe--c----CeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 159 QSSVTLECVVS-GVPTPDIKWYKDDSLIKGRN--ITYE--N----NVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 159 G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~--~~~~--~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
|+.+.|.|.+. ++|+|.|+|+.++..+.... .... + ....|.+..-..++...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999876 69999999999998772211 1111 1 1246777655556777899999987643
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0028 Score=52.95 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=40.6
Q ss_pred ecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC---eEEEeeCce---EEEEEecCCCCCCceeEEEEEEcc
Q psy2776 685 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK---KREIFDGEN---IILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~---~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..|+.++|.|.+.|+ |. ..++|.+||.++..+.. .....|+.. ..|.+. ..+...|+|.+.-.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~----~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT----PEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE----CCCCCeEEEEEEeC
Confidence 346678999999996 64 47899999998764321 111223332 334443 34566899999864
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0021 Score=51.47 Aligned_cols=62 Identities=21% Similarity=0.407 Sum_probs=40.5
Q ss_pred eEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 526 WKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 526 v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
++|.|.+.|+ |+ ..++|+|+|+.+..+.. .....+.+ .+.|.|.....++...|+|.|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999987 44 58999999987544321 11111112 2355555555567789999998764
|
|
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0046 Score=51.88 Aligned_cols=67 Identities=18% Similarity=0.402 Sum_probs=42.0
Q ss_pred cceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCc-EEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKA-CRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~-~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.++|.|.+.|+ |+. .++|+++|..+..+.. .....++++ ..-....+...+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 6789999999996 443 8899999964433211 122222222 12223344455889999999987543
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0035 Score=51.43 Aligned_cols=80 Identities=38% Similarity=0.733 Sum_probs=63.0
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee--eeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
+|..+.+......++.|+|..|. .++..+..|.++.........|..... ....+.|.+|.+...|.|+.++.+..|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred cCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 34445566678999999999987 677899999999887666534444443 456899999999999999999999888
Q ss_pred cCC
Q psy2776 124 TGP 126 (803)
Q Consensus 124 ~~~ 126 (803)
.+.
T Consensus 81 ~g~ 83 (85)
T PF00041_consen 81 EGP 83 (85)
T ss_dssp EEE
T ss_pred CcC
Confidence 654
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.003 Score=50.54 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=40.3
Q ss_pred eEEEEEEEeec-CC-CceEEeeCCeeccCCCCe-EEE--eeCc---eEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 689 TIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK-REI--FDGE---NIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 689 ~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~-~~~--~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.++|.|.+.|+ |. ..+.|++||.++..+... ... .++. .+.|.|... ..++...|+|.|....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~-~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSAS-TWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccc-cCCCCCEEEEEEEEcC
Confidence 36899999997 55 589999999975433211 111 1222 234666554 3456688999998653
|
|
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=54.88 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.0
Q ss_pred eccccceeEEEEe-c-CC-ceeeEEeecCeeccc
Q psy2776 318 VPHLGDATFQVEL-S-SP-DIQVKWLKKGKEIKE 348 (803)
Q Consensus 318 ~~~g~~~~l~C~~-~-~p-~~~i~W~~~g~~l~~ 348 (803)
...++.++|.|.+ + .| ..++.|++||+++..
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~ 47 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSS 47 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcc
Confidence 3357789999999 4 55 789999999999864
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0045 Score=51.88 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=46.3
Q ss_pred CeEEEEEEEeec-CCCceEEeeCCe----ecc-----------C--CCCeEEEe-eCceEEEEEecCCCCCCceeEEEEE
Q psy2776 688 GTIRLMAKVKAS-PAPSIVWFRNNK----PLL-----------S--SPKKREIF-DGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 688 ~~v~L~C~~~g~-p~~~v~W~~~~~----~l~-----------~--~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
++++|.|..... ....|+|.|... .+. . ..|..... .....+|.|.++ +.+|.|.|+|..
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nv-t~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNA-TEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCC-CcccCEEEEEEE
Confidence 468899988532 334688988422 111 0 11222211 123478999999 899999999999
Q ss_pred Ecc-CcceeeeEEE
Q psy2776 749 TNE-LGSATHGARV 761 (803)
Q Consensus 749 ~N~-~G~~~~~~~l 761 (803)
.+- .|..++.+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 974 6776665544
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.002 Score=52.40 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=40.7
Q ss_pred eEEEEEEEeecCCC--ceEEeeCCe--e---c-------------cCCCCeEEEee--CceEEEEEecCCCCCCceeEEE
Q psy2776 689 TIRLMAKVKASPAP--SIVWFRNNK--P---L-------------LSSPKKREIFD--GENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 689 ~v~L~C~~~g~p~~--~v~W~~~~~--~---l-------------~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
++.|.|.+.....+ .+.|++... . + ....|+..... .....|.|.++ +.+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNL-RVEDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCC-CHHHCEEEEE
Confidence 47899998765543 789988541 1 1 01234444444 56788999999 8999999999
Q ss_pred E
Q psy2776 747 V 747 (803)
Q Consensus 747 ~ 747 (803)
.
T Consensus 80 ~ 80 (81)
T smart00406 80 A 80 (81)
T ss_pred c
Confidence 6
|
|
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0027 Score=51.60 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred eeEEEEEEcCcCCC--eeEEeeCCe--e---ec-------------CCCcEEEEec--CCeEEEEEeeeccCcCeEEEEE
Q psy2776 525 QWKVEVKYFGFPRP--EISWMKNGA--E---IT-------------DSKACRIFID--EETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 525 ~v~l~C~~~g~p~~--~v~W~~~g~--~---i~-------------~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
++.|.|.+.....+ .+.|++... . +. ...++.+... .+...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 46899998765543 788987431 0 10 0133443333 4557899999999999999996
Q ss_pred E
Q psy2776 583 A 583 (803)
Q Consensus 583 a 583 (803)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
|
|
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0071 Score=50.37 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=42.4
Q ss_pred EecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCe-EEE--eeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 684 VKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK-REI--FDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~-~~~--~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+..|+..+|.|.+.|+ |. ..++|++||.++. +... ... .++.........+ ...+...|+|.+.-.
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~-~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEF-TPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEE-CCCCCCeEEEEEEEC
Confidence 3457778999999996 44 4789999999986 3221 111 2333333333333 456778899999864
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0035 Score=55.16 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=47.4
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---e---c--------C---CCcEEEEecC--CeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---I---T--------D---SKACRIFIDE--ETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i---~--------~---~~~~~~~~~~--~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|...... ...+.|+|.. +. | . . ..++...... ....|.|.++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 46788999999999976543 4568999742 11 1 0 0 1234443322 235799999999
Q ss_pred CcCeEEEEEEEc
Q psy2776 574 ADTSTYTVTATN 585 (803)
Q Consensus 574 ~dsG~Y~C~a~n 585 (803)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998865
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0031 Score=53.67 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=43.7
Q ss_pred EEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCC---eEEEeeCce---EEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 683 TVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPK---KREIFDGEN---IILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~---~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
....++.++|.|.+.|+ | ...|.|++||.++..+.. .....++.. +.|.+..- .-++...|+|.+....-
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~-~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKS-DWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHH-HhCCCCeEEEEEEecCC
Confidence 34457889999999986 6 457999999999853311 111113332 33444432 12346789999987543
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0095 Score=49.94 Aligned_cols=69 Identities=19% Similarity=0.383 Sum_probs=43.5
Q ss_pred eecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCc-EEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKA-CRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~-~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..|+.++|.|.+.|+ |.. .++|+++|+.+..+.. ......+++ .....-.+...+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 457889999999995 443 7899999998776411 111222221 11122234445667999999987544
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0091 Score=48.85 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=44.8
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEE---eeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~---~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.++.++|.|.+.|+ |.. .|.|+++|..+......... .++.........+ ...+...|+|.+......
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTV-TWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEE-ETTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEe-cCCCCCEEEEEEEECCCC
Confidence 38999999999986 654 79999999988655432222 2333333333333 245666899999876543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0089 Score=50.12 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=43.8
Q ss_pred CCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 687 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 687 g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
.....+.|.+ .|.|.+.|.|+++..... ........++. .++|.+... ..+|.-.|+|+|.|..-.....+.++
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~-~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPS-REANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecC-HHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3467899999 577999999999711100 01111111222 356767664 44555669999999875544333333
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0065 Score=50.84 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=42.5
Q ss_pred cCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC---eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 686 EKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK---KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++.++|.|.+.|+ |. ..|.|++||..+..+.. .....++. .+.|.+..- .-.+...|+|.+........
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~-~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQE-DWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchH-HhcCCCeEEEEEEECCeeee
Confidence 35678999999996 65 47999999998733211 11111222 223444432 12356789999998665433
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0033 Score=65.58 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=84.0
Q ss_pred EEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee---CCee--
Q psy2776 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKP-- 712 (803)
Q Consensus 638 ~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~---~~~~-- 712 (803)
.++|...-..+..++.....-...++..-+ .|.+..-+....+..++++.++|-+.|.|.+.|.|.+ |+..
T Consensus 166 iv~C~~~~t~~~~~~~~cettm~ptpe~e~----~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv 241 (560)
T KOG4597|consen 166 IVYCIHGKTWPRVSPDPCETTMAPTPEFEP----SCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVV 241 (560)
T ss_pred eEEEeccccCCCCCCCccccccCCCCCCCC----CcccccCcchhhcccchhhcccccccCCcCceeeeehhhcccccee
Confidence 355666666666555544333332222111 1455566667788899999999999999999999976 3332
Q ss_pred ccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 713 LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 713 l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+..+..+..-...+...|.|.+. ...|+|.|+|.|.|.+|...+.+.+.+.
T Consensus 242 ~~~nq~~e~p~vtstcql~ic~e-wq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 242 MRPNQTVENPVVTSTCQLVICNE-WQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred ecCccccCCcceeeeeeEEEcch-hhcCCCceeeccccccceeeccceeeee
Confidence 22222222223345678999999 6899999999999999999999999874
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00075 Score=74.38 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=65.1
Q ss_pred cccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccc
Q psy2776 309 LSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 309 ~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
+.+.|.-+.+..+..+.+.|+. +.|...++|+|++..+..........+. .+++..+...|.|.|+|.+.|..+.
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC---Cccccchhhhhcccceeeeehhhcc
Confidence 3344555667778889999998 7999999999999888876555555444 5999999999999999999997764
Q ss_pred e-----eeeeeecCC
Q psy2776 387 S-----KLKWLDFGS 396 (803)
Q Consensus 387 ~-----~~~~~~~~~ 396 (803)
. .+.|+..++
T Consensus 209 r~~~~~~v~vyv~gg 223 (909)
T KOG1480|consen 209 RKSDPATVQVYVNGG 223 (909)
T ss_pred ccccceEEEEEEcCc
Confidence 3 355554443
|
|
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0044 Score=46.70 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=36.4
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
.-|.+|+|+|-..+. .+.|.+++..+... +..+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~----------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS----------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC----------CceEEeeccC-CCCceEEEEeCCC
Confidence 348899999964422 38999999655542 2344555555 8899999999654
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0026 Score=47.94 Aligned_cols=51 Identities=39% Similarity=0.688 Sum_probs=37.4
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
.|.+|+|+|...+. .+.|++++..+... ...+.+.+.. +++|.|+|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~-------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGS-------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCC-------CceEEeeccC-CCCceEEEEeCCC
Confidence 58999999987532 39999998655432 2345566666 9999999999653
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0006 Score=75.09 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=67.7
Q ss_pred eeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.|...+.-..|.++...+|.|.. .+.|...++|++|+..+.++.+.....+.. |+|..+ ...|.|+|+|+|.|-+
T Consensus 131 ~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~---li~~~a-rlsd~~nytc~a~ni~ 206 (909)
T KOG1480|consen 131 HFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHN---LIISQA-RLSDSGNYTCEATNIV 206 (909)
T ss_pred hhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCC---ccccch-hhhhcccceeeeehhh
Confidence 35555666788899999999976 678999999999999998866665555555 888888 6899999999999988
Q ss_pred cce-eeeEEEEE
Q psy2776 753 GSA-THGARVTV 763 (803)
Q Consensus 753 G~~-~~~~~l~V 763 (803)
+.. +..+.+.|
T Consensus 207 ~~r~~~~~~v~v 218 (909)
T KOG1480|consen 207 AKRKSDPATVQV 218 (909)
T ss_pred ccccccceEEEE
Confidence 765 33444443
|
|
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.18 Score=53.37 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=53.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++..++|.|.=++.+......... ..+.+.+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~---------------------------------------~~VtV~~y 327 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINE---------------------------------------HHITVMSY 327 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeee---------------------------------------eEEEEEEe
Confidence 345699999999999999866544322111100 13333444
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeecC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEITD 551 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~~ 551 (803)
-+|... +....+.+|+...-.|.+..+ |+ ..+.|++||.++..
T Consensus 328 r~PsVs--------V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 328 KRPNIT--------VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cCCCcc--------ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 444321 113446789999999998765 44 36889999988875
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.23 Score=51.57 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.3
Q ss_pred eEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeecCC
Q psy2776 518 QRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEITDS 552 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~~~ 552 (803)
..+..|++..-+|.+..+ |+ ..+.|++||..+...
T Consensus 255 ~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 255 PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 346789999999998765 44 368899999887654
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.23 Score=52.52 Aligned_cols=80 Identities=16% Similarity=0.278 Sum_probs=51.8
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 502 (803)
..|+|..++...+|.|+=...+..+...... .+.+...-+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~----------------------------------------~VtV~~yr~ 237 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNST----------------------------------------SVTVSTYNA 237 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeee----------------------------------------EEEEEEecC
Confidence 4599999999999999866545433222210 122222333
Q ss_pred CCCccceeeeccccceEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeec
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEIT 550 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~ 550 (803)
|... +....+.+|+...-.|.+..+ |+ ..+.|++||.++.
T Consensus 238 Psvs--------v~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 238 PLVD--------LSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred Cccc--------ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 3321 113446789999999998765 44 3688999999887
|
|
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0074 Score=50.74 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=40.7
Q ss_pred EEeecceeEEEEEEcCc--CC-CeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 519 RLSVKSQWKVEVKYFGF--PR-PEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~--p~-~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
.+..|+.++|+|.+.|+ |+ ..++|+|+|...............++ +.|.+..-...+.-.|+|.+.+....
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 35568899999999998 54 47899998743321100000111111 23434332222344899999987543
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.023 Score=47.39 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=42.6
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCCe-E-EEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEET-S-TIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~~-~-~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
..|....|.|.+.|+ |+ ..++|+|||+.+. +.. ..+...+++ . ......+...+...|+|.+.....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 346667999999996 43 4779999999887 421 122222222 1 122234456777789999998643
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.024 Score=46.38 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=43.5
Q ss_pred cceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEe--cCCe----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFI--DEET----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~--~~~~----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
++.+.|.|.+.++ |. ..|.|+++|..+.......... .++. +.|.+. ..+...|+|.+.+....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 8899999999986 43 3789999999987653322222 2222 234444 56667999999987544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.27 Score=50.61 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=56.3
Q ss_pred eeEEecCCeEEEEEEEee--cCC-CceEEeeCCeecc-----------------CCCCeEEEe------eCceEEEEEec
Q psy2776 681 EKTVKEKGTIRLMAKVKA--SPA-PSIVWFRNNKPLL-----------------SSPKKREIF------DGENIILELKE 734 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g--~p~-~~v~W~~~~~~l~-----------------~~~~~~~~~------~~~~~~L~i~~ 734 (803)
+..+..|.+|.|.|...- .-. ....|+--|-++. .+..+.+.. +-..++|.|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 466777999999998753 322 3688987654432 122233332 12357899999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+ +.+.+|=|+|+|.-..-+..+.--|.|
T Consensus 353 a-~I~N~GCY~~~a~~g~~~~ec~~Cl~V 380 (500)
T PHA02914 353 A-HINNAGCYEAQAFMGKFKEECRHCFKV 380 (500)
T ss_pred E-EEEcCCceEEEEecCcchhhhhhheEe
Confidence 9 799999999999987666666655665
|
|
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.022 Score=47.78 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=42.8
Q ss_pred CcEEEEEEEC-ccCCCeeEEEEcCeeccceeE-EEecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeE
Q psy2776 160 SSVTLECVVS-GVPTPDIKWYKDDSLIKGRNI-TYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETS 226 (803)
Q Consensus 160 ~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s 226 (803)
....+.|.+. |+|.+.|+|+++......... ...++ ...|.+..-..+|...|+|++.|..-.....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 4678899985 799999999997211111111 11111 3467776666677778999999987544333
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0069 Score=45.96 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=37.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
.+.|.|+|.. ..+|.|++ |..+... .+.+|.+..+..+-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~---------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV---------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc---------cccEEeccCcccCCCcceEecCcc
Confidence 4578999965 25699999 6544431 146788888888899999999977
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.024 Score=47.46 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=42.8
Q ss_pred CeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
..+.+.|.+. |.|.+.++|+++...... .......++. .++|.+..- ..+|...|+|+|+|..-.....+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~-~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPT-PEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecC-HHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4678999875 669999999997211100 0111112222 345666554 4456667999999987544433333
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.025 Score=47.28 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=41.0
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.|+..+|.|.+.|+ |. ..++|.+||..+..+.. ..+...+++ +.|.+ ...+...|+|.+.....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence 35667999999996 43 57899999998865421 111222221 23444 34566699999988643
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=48.97 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=41.9
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCC-cEEEE-ecCC----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSK-ACRIF-IDEE----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~-~~~~~-~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
.++.+.|.|.+.|+ |. ..++|+++|..+..+. ..... ..++ .+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 35668999999995 54 5789999999874331 11111 1111 134444433334567999999987544
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0084 Score=51.14 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=41.4
Q ss_pred EecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe--EEEe----eCc---eEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 684 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIF----DGE---NIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~--~~~~----~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
+..|+.++|.|.+.|+ |.. .+.|++||.++...... .... ++. .+.|.|..- .-.+...|+|++.-..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~-~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAE-DWNAGDVFTCVVGHEA 91 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHH-HhcCCCcEEEEeEeCC
Confidence 4457899999999997 443 68999999987543211 1111 122 233444332 1134567999998643
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.017 Score=48.37 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=44.7
Q ss_pred CcEEEEEEEC-ccCCCeeEEEEcCeeccceeEEE--ecC---eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEE
Q psy2776 160 SSVTLECVVS-GVPTPDIKWYKDDSLIKGRNITY--ENN---VARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229 (803)
Q Consensus 160 ~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 229 (803)
..+.+.|.+. |+|.+.|.|+++........... ++. ...|.+..-..+|...|+|++.|..-.......+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4678999877 79999999998732111111111 111 3467776666677778999999987554444433
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=49.00 Aligned_cols=63 Identities=13% Similarity=0.274 Sum_probs=38.6
Q ss_pred EecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe-EEEeeCce----EEEEEecCCCCC-CceeEEEEEEc
Q psy2776 684 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFDGEN----IILELKEADSET-DAGDYKVVATN 750 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~-~~~~~~~~----~~L~i~~v~~~~-D~G~Y~C~a~N 750 (803)
...++.++|.|.+.|+ |.. .+.|++||..+..+... ....+++. +.|.|. .. ....|+|.+.-
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt----~~~~~~~ysC~V~H 83 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT----KDSLGKKFRCIYKH 83 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC----chhCCCeEEEEEEE
Confidence 3346789999999996 543 78999999987543221 11122222 223343 33 33449999986
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.27 Score=52.12 Aligned_cols=207 Identities=14% Similarity=0.079 Sum_probs=106.2
Q ss_pred eeeEEEEeccccCCeEEEEEEEEccC-ccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC
Q psy2776 97 TSTTYEVTKLTTKHEYMFRVAAVNAI-GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP 174 (803)
Q Consensus 97 ~~~~l~i~~~~~~d~g~y~c~a~~~~-g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p 174 (803)
....|+|..++..++|.|.=+..+.. +....+....+.+. .+|.+...+ .-+.+|+...=.|.+..+ |.-
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y------r~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~ 358 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY------KRPNITVIG--DPVLLGNPYAAYCKVNKYYPPH 358 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe------cCCCccccC--CccccCCCceEEEEeeeecCCC
Confidence 46779999999999999986654322 22222223332322 445444433 346789999999999864 333
Q ss_pred --eeEEEEcCeecccee----EEE--ec---CeeEEEEecCCCCc--ceEEEEEEEcCCcCeeeE---E--EEEEeeeec
Q psy2776 175 --DIKWYKDDSLIKGRN----ITY--EN---NVARFTVVNCSESS--EGRYTCKATNEAGTAETS---C--TLLVQGKEI 236 (803)
Q Consensus 175 --~i~W~~~~~~~~~~~----~~~--~~---~~~~L~i~~v~~~d--~G~Y~C~a~n~~g~~~~s---~--~l~V~~~~~ 236 (803)
.+.|++|+.++.... +.. ++ ..++|.+.+....| -=..+|.+....+....+ + .-.|...
T Consensus 359 SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~-- 436 (566)
T PHA03269 359 SVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPF-- 436 (566)
T ss_pred ceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccC--
Confidence 499999998887421 111 11 12344443221122 234699998654433222 1 1222222
Q ss_pred ccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeec-cccceeeccccccccceeeeeeccCCCccccccccCCce
Q psy2776 237 KESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSV-SKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315 (803)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (803)
+...+. ...|+-.|.+.=.+.. -...|+.+.......... ....-..-|. ++.-.+..
T Consensus 437 ---PtISm~---------------FedG~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~-itG~C~ehPG--LVNLRS~~ 495 (566)
T PHA03269 437 ---PNVSIE---------------IIDGHIVCLAKCVPRGVVHFNWWINDIPIEHENSE-ILGVCDNNKR--FVNLQSSC 495 (566)
T ss_pred ---CeEEEE---------------EeCCEEEEecccccCCCceEEEEecCCCCCCccce-eeccCCCCCC--ceeecccc
Confidence 122121 2335556665544443 378888777663332221 1111111111 11111111
Q ss_pred eeeccccceeEEEEe-cCCc
Q psy2776 316 TLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~ 334 (803)
..-...+.+...|++ |.|.
T Consensus 496 pLS~~dgpveYTCrL~GYP~ 515 (566)
T PHA03269 496 DTSELDGPITYSCHLDGYPK 515 (566)
T ss_pred cccccCCceeEEEEEeecCC
Confidence 122335678999999 8764
|
|
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=44.53 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=36.1
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+.|.|+|.. ...|.|++ |..+... .+.+|.+.++ ..+-.|.|.|.++|
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~---------~~~tlnLGs~-~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV---------SNTLLDLGSR-INDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc---------cccEEeccCc-ccCCCcceEecCcc
Confidence 5689999965 25699999 4443211 1447888888 67888999999988
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0096 Score=50.78 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=41.8
Q ss_pred eecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCc--EEEEec---CC----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 521 SVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKA--CRIFID---EE----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~--~~~~~~---~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
..|+.++|.|.+.|+-+ ..++|+++|.++..... .....+ ++ .+.|.|..-...+...|+|.|.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 34778999999999654 36799999998764321 111111 11 13444433222455689999998643
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0093 Score=52.23 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=47.5
Q ss_pred cCCeEEEEEEEeec-----CCCceEEeeCCeeccC---CCCeEEE--------e--eCceEEEEEecCCCCCCceeEEEE
Q psy2776 686 EKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLS---SPKKREI--------F--DGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-----p~~~v~W~~~~~~l~~---~~~~~~~--------~--~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
=+++|.|.|.+... +...|.|+++|..+.. ....... . -.+.+.|.+... ..-.|+|+|.
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~--~a~~GnYTCe 103 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKS--DAVEGNYTCE 103 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHH--HHH-EEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcch--hccccceEEE
Confidence 38999999999752 3446999999987631 1111100 0 012345888775 2448999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
+.+...+....+.|+++
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99999888888888875
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.49 Score=49.59 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=107.4
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC---
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP--- 174 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p--- 174 (803)
...|.|..++...+|.|.=+..+..+....+....+.+. .+|.+...+ ..+.+|+...=.|.+..+-++
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y------r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv 252 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF------RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRA 252 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe------cCCcccccC--CccccCCCceEEEEeeeecCCCce
Confidence 456999999999999999987766553333333333333 455554433 346789999999999864333
Q ss_pred eeEEEEcCeeccc-eeEE---Eec-----CeeEEEEecCCCC-cceEEEEEEEcCCcCeee---EE--EEEEeeeecccc
Q psy2776 175 DIKWYKDDSLIKG-RNIT---YEN-----NVARFTVVNCSES-SEGRYTCKATNEAGTAET---SC--TLLVQGKEIKES 239 (803)
Q Consensus 175 ~i~W~~~~~~~~~-~~~~---~~~-----~~~~L~i~~v~~~-d~G~Y~C~a~n~~g~~~~---s~--~l~V~~~~~~~~ 239 (803)
.+.||+|+.++.. ..+. ... ..++|++.+.... .-=..+|.+.-..+.... ++ .-.|...
T Consensus 253 ~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~----- 327 (466)
T PHA03270 253 AFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPR----- 327 (466)
T ss_pred EEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccC-----
Confidence 4999999998853 2111 111 1233433332211 112678998865443322 11 1222222
Q ss_pred cceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee-eccCCCccccccccCCceeee
Q psy2776 240 ARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW-FESKSTPAVEFLSKLPSVTLV 318 (803)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (803)
+...+. .+.++-.|.+.=.+..-.+.|+............... .....+....+-... .+
T Consensus 328 P~Isv~---------------F~dG~AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~----pl 388 (466)
T PHA03270 328 PTIEME---------------FGGDEAVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSAL----PL 388 (466)
T ss_pred CeEEEE---------------EeCCEEEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeeccc----cc
Confidence 222222 2234555665555555677887776655333222211 111111111111111 11
Q ss_pred ccccceeEEEEe-cCCc
Q psy2776 319 PHLGDATFQVEL-SSPD 334 (803)
Q Consensus 319 ~~g~~~~l~C~~-~~p~ 334 (803)
. .+.+..+|.+ |.|.
T Consensus 389 S-d~~~eYTCrl~GYP~ 404 (466)
T PHA03270 389 S-REHSEYTCRLVGYPA 404 (466)
T ss_pred c-cCCceEEEEEeecCC
Confidence 2 2457899998 7764
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=47.34 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=43.3
Q ss_pred EEecCCeEEEEEEEeec-CC--CceEEeeCCeeccCCCCeEE----EeeCceEEEEEecCCCCCCce-eEEEEEEccC
Q psy2776 683 TVKEKGTIRLMAKVKAS-PA--PSIVWFRNNKPLLSSPKKRE----IFDGENIILELKEADSETDAG-DYKVVATNEL 752 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~--~~v~W~~~~~~l~~~~~~~~----~~~~~~~~L~i~~v~~~~D~G-~Y~C~a~N~~ 752 (803)
.+.+|..+++.|.+.+. |. ..+.|++++..+....-... ........+.+... .+|.| .|.|.|.=.+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt--reD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT--IEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc--hhhCCcEEEEEEEEee
Confidence 34679999999999754 66 47999998776654321110 01123356666664 45555 8999998443
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.036 Score=48.23 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=49.9
Q ss_pred eccccceeEEEEe-c-CCc-eeeEEeecCeeccccce---eEEEEc-CceeEEEEeecCCC---C-CccEEEEEeccccc
Q psy2776 318 VPHLGDATFQVEL-S-SPD-IQVKWLKKGKEIKESAR---HIITSR-GTQRKLVIKRVTQD---D-ETDIGVLALNVKSV 386 (803)
Q Consensus 318 ~~~g~~~~l~C~~-~-~p~-~~i~W~~~g~~l~~~~~---~~~~~~-~~~~~l~i~~~~~~---d-~g~y~c~~~~~~~~ 386 (803)
+.+++.++|.|.+ + .|. .++.|++||..+..+.. .....+ +.......-.+... + ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3356789999999 4 554 79999999998875432 122222 33322222233332 3 56899999999888
Q ss_pred eeeeeeec
Q psy2776 387 SKLKWLDF 394 (803)
Q Consensus 387 ~~~~~~~~ 394 (803)
....|...
T Consensus 95 ~~~~~~~~ 102 (115)
T cd05769 95 DTDKWQSI 102 (115)
T ss_pred cceeeeee
Confidence 88888554
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=49.04 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=47.4
Q ss_pred EEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCe--EEEee--Cc---eEEEEEecCCCCCC-ceeEEEEEEccC
Q psy2776 683 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK--REIFD--GE---NIILELKEADSETD-AGDYKVVATNEL 752 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~--~~~~~--~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~ 752 (803)
....++.++|.|.+.|+ |. ..|.|++||.++..+... ....+ +. .+.|.|... ...| .-.|+|.+.-..
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~-~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSAT-EWFNPRNTFTCIVQFYG 92 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChH-HhccCCCeEEEEEEEeC
Confidence 34457789999999997 66 389999999988654221 11111 22 233555442 1113 567999999776
Q ss_pred cceeeeE
Q psy2776 753 GSATHGA 759 (803)
Q Consensus 753 G~~~~~~ 759 (803)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T cd05769 93 GTDTDKW 99 (115)
T ss_pred Cccceee
Confidence 6655444
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.041 Score=46.17 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=38.7
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEe-eCce---EEEEEecCCCCCCceeEEEEEEccC
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIF-DGEN---IILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~-~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.++.++|.|.+.|+ |.. .|+|++||.+ ..+.. -.... ++.+ +.|.+... .-...-.|+|.+.-.-
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~-~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPAS-EWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHH-HcCCCCcEEEEEEeCC
Confidence 46679999999996 543 7899999997 33211 01111 3333 23444332 1112566999998754
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.017 Score=42.72 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=34.6
Q ss_pred CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 562 ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 562 ~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
.+..|.|.++..+|+|.|.|..+|..-....++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 4568999999999999999999998777888888888664
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.044 Score=46.96 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=47.4
Q ss_pred ceeEEecCCeEEEEEEEeecCCC---ceEEeeCCe-ecc--------------CCCCeEEEee--CceEEEEEecCCCCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNK-PLL--------------SSPKKREIFD--GENIILELKEADSET 739 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~~~-~l~--------------~~~~~~~~~~--~~~~~L~i~~v~~~~ 739 (803)
....+..|+.++|.|++.|.-.. .+.|+|+.. .++ ...++.+..+ .+...|.|.++ +.+
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L-~a~ 84 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL-RAN 84 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC-CHH
Confidence 34667889999999999876444 477888421 110 2233333333 45788999999 799
Q ss_pred CceeEEEEE
Q psy2776 740 DAGDYKVVA 748 (803)
Q Consensus 740 D~G~Y~C~a 748 (803)
|.+.|.|.-
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999976
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.037 Score=46.42 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=38.1
Q ss_pred cceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCCeEEE-EEeeeccCcCe-EEEEEEEcCC
Q psy2776 523 KSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEETSTI-AIYSVVRADTS-TYTVTATNAA 587 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~~~~L-~i~~v~~~dsG-~Y~C~a~n~~ 587 (803)
+..++|.|.+.|+ |. ..++|.+||..+..+.. ......++...+ .-..+..++.| .|+|.+....
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 5678999999996 43 47799999998765421 111222222111 11133333234 5999999853
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.24 Score=56.05 Aligned_cols=131 Identities=22% Similarity=0.382 Sum_probs=95.8
Q ss_pred ceEEEEEeeccCCcEEEEEEEEcCCCCc----eeeEEEEEe---cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEE
Q psy2776 5 SATLTIVKFEDKDLGDYTISLSNALGQA----SATTKVTLL---SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77 (803)
Q Consensus 5 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~~----~~~~~l~V~---~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~ 77 (803)
....+|.++.++-...|...|.|..... ...+.|.|. ..|.+............+++|+|..|..+. ..+..
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~pn-g~ild 475 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPN-GVILD 475 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCC-Cccee
Confidence 4578899999999999999999986542 222333332 233333344556677899999999987754 34788
Q ss_pred EEEEeecCC-CceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEE
Q psy2776 78 YVLESHDKD-EFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136 (803)
Q Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~ 136 (803)
|-+.+.+.+ .......+.....+.+|.+|+++..|.|+++|...+|-+..+.....-+.
T Consensus 476 YEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~ 535 (996)
T KOG0196|consen 476 YEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL 535 (996)
T ss_pred EEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence 888777664 23344555556788999999999999999999999999888877665554
|
|
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.095 Score=48.96 Aligned_cols=111 Identities=20% Similarity=0.335 Sum_probs=71.8
Q ss_pred eeeecCCcEEEEEEEC-ccCCCeeEEEEcCee-c----------cc-----------eeEEEecCeeEEEEecCCCCcce
Q psy2776 154 SVAGFQSSVTLECVVS-GVPTPDIKWYKDDSL-I----------KG-----------RNITYENNVARFTVVNCSESSEG 210 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~-~----------~~-----------~~~~~~~~~~~L~i~~v~~~d~G 210 (803)
+....|+++.|+|... +.......|++++.- + +. ....+.++.++|+|+++..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 4455689999999965 344456889875431 1 11 13556678899999999999999
Q ss_pred EEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 211 RYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 211 ~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
.|+|.+....+..+. .-.|.|+.. ...+.+. .-..+..+.|++......- +.|+
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~---------------~V~~~W~--e~nNeT~V~CyVgS~~~dv-p~W~ 168 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKE---------------DILYVVE--EHNNETIITCFVGSKHGDV-PRFI 168 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecc---------------eEEEEEE--ecCCeEEEEEEEEeccCCC-ccEE
Confidence 999999987766554 445666333 1222222 2344566677776665532 2565
|
|
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.023 Score=41.98 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=34.6
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
+...|.|-++..+|+|.|.|...|..-..+.++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3457999999999999999999998888888888888765
|
|
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.024 Score=47.69 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=39.7
Q ss_pred EEecCCeEEEEEEEeec--CCC-ceEEeeCCeecc-CCC-CeEEEeeCceE---EEEEecCCCCCCceeEEEEEEccCc
Q psy2776 683 TVKEKGTIRLMAKVKAS--PAP-SIVWFRNNKPLL-SSP-KKREIFDGENI---ILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~--p~~-~v~W~~~~~~l~-~~~-~~~~~~~~~~~---~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+..|+.++|.|.+.|+ |.. .++|.|||.... ... ......++... .|.+..- .-.+.-.|+|.+....-
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~-~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTD-DWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHH-HccCCCcEEEEEECCCC
Confidence 35568999999999998 443 689999874332 111 11111233322 3334321 11134469999987643
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.096 Score=43.74 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=46.7
Q ss_pred CeeeecCCcEEE-EEEEC-ccCCCeeEEEEcCeeccceeEEEe-c----CeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 153 DSVAGFQSSVTL-ECVVS-GVPTPDIKWYKDDSLIKGRNITYE-N----NVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 153 ~~~v~~G~~~~L-~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~-~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
...+.+|+.+.+ .|.+. |.|++.|.|+.+............ + -...|.+..-+.+|.-.++|.+.+..-.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 345678899999 99976 799999999986332211111111 1 1245777666777888999999987543
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.074 Score=44.42 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=47.2
Q ss_pred eEEecCCeEEE-EEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 682 KTVKEKGTIRL-MAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 682 ~~v~~g~~v~L-~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+.+|+.+.+ .|.+ .|.|.+.+.|+.+..... ........++. .++|.+..- ..+|.-.++|++....-...
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~-r~d~G~~vtC~V~H~al~~~ 88 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPS-RHANGHPLTCVVSHPALQQD 88 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeC-HHHCCcEEEEEEeCcccCCC
Confidence 46778888888 9987 566999999998633221 11111111121 345666554 45677779999998755433
Q ss_pred eeEEE
Q psy2776 757 HGARV 761 (803)
Q Consensus 757 ~~~~l 761 (803)
..+.+
T Consensus 89 ~~~~~ 93 (97)
T cd07704 89 FRITH 93 (97)
T ss_pred ceeeE
Confidence 33333
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.2 Score=47.37 Aligned_cols=116 Identities=12% Similarity=0.193 Sum_probs=71.2
Q ss_pred eEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC--e
Q psy2776 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP--D 175 (803)
Q Consensus 99 ~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p--~ 175 (803)
..|+|..++..++|.|.=+..+..|....+....+.+. .+|.+...+ ..+.+|+...=.|.+..+ |.- .
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y------r~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~ 269 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY------NAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVK 269 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe------cCCcccccC--CccccCCCceEEEEeeeecCCCceE
Confidence 45999999999999998665454343223333333333 455554433 346789999999999864 332 5
Q ss_pred eEEEEcCeeccc-ee----EE--Eec---CeeEEEEecC-CCCcceEEEEEEEcCCcC
Q psy2776 176 IKWYKDDSLIKG-RN----IT--YEN---NVARFTVVNC-SESSEGRYTCKATNEAGT 222 (803)
Q Consensus 176 i~W~~~~~~~~~-~~----~~--~~~---~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~ 222 (803)
+.|++|+.++.. .. .. .++ ..++|++.+. ..+.-=..+|.+.-..+.
T Consensus 270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~ 327 (486)
T PHA03273 270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE 327 (486)
T ss_pred EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence 999999998872 21 11 111 2344555443 223344689999865544
|
|
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.1 Score=51.01 Aligned_cols=178 Identities=20% Similarity=0.225 Sum_probs=101.6
Q ss_pred EEecCCeEEEEeeCCCCCCCCCeEEEEE-EeecCCCceeEEEee-----------eeeeEEEEeccccCCeEEEEEEEEc
Q psy2776 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVL-ESHDKDEFMVWNKIE-----------TTSTTYEVTKLTTKHEYMFRVAAVN 120 (803)
Q Consensus 53 ~~~~~~~v~l~c~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~c~a~~ 120 (803)
....+.++.|.|.+|+..|+..-..|-+ .++-.........++ .....++|.+|.+...|.|.+.|.|
T Consensus 340 s~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvN 419 (996)
T KOG0196|consen 340 SNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVN 419 (996)
T ss_pred eecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccccccEEEEEEee
Confidence 3467999999999998877654444443 222211111222222 2368899999999999999999998
Q ss_pred cCccCCCc-ceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC-----eeEEEEcCeeccceeEEEec
Q psy2776 121 AIGTGPAS-HNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-----DIKWYKDDSLIKGRNITYEN 194 (803)
Q Consensus 121 ~~g~~~~s-~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-----~i~W~~~~~~~~~~~~~~~~ 194 (803)
....-.+. .....+.+.... ..|+.+.. -.......+.++|.....-.|.. ++.|+..+..-... .....
T Consensus 420 gVS~lsp~~~~~a~vnItt~q-a~ps~V~~--~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~~-~~~~t 495 (996)
T KOG0196|consen 420 GVSDLSPFPRQFASVNITTNQ-AAPSPVSV--LRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERSY-STLKT 495 (996)
T ss_pred cccccCCCCCcceeEEeeccc-cCCCccce--EEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccccce-eEEec
Confidence 65332111 122222222111 11111100 01122345677777776433332 46666554311111 12223
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
...+.+|..+.+.....++.+|....|....+-.+..+..
T Consensus 496 ~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~ 535 (996)
T KOG0196|consen 496 KTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL 535 (996)
T ss_pred ccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence 3456889999999999999999998887766655555544
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.042 Score=57.67 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=79.4
Q ss_pred EEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc---Ceecc-c
Q psy2776 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD---DSLIK-G 187 (803)
Q Consensus 112 g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~---~~~~~-~ 187 (803)
-.++|+.....+.......-. .+...|.....+.+...+....+.+|++..++|.+.|.+.+.|.|.+- +..+- .
T Consensus 165 ~iv~C~~~~t~~~~~~~~cet-tm~ptpe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~ 243 (560)
T KOG4597|consen 165 RIVYCIHGKTWPRVSPDPCET-TMAPTPEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR 243 (560)
T ss_pred eeEEEeccccCCCCCCCcccc-ccCCCCCCCCCcccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeec
Confidence 356777665555433332221 111112212224555556667788999999999999999999999762 22111 1
Q ss_pred eeEEEe----cCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 188 RNITYE----NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 188 ~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
.+..+. .....|.|-+....|+|.|+|.+.+..|.....+.+.+..
T Consensus 244 ~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 244 PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeeec
Confidence 121121 1356799999999999999999999999988888776653
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.091 Score=45.05 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=44.8
Q ss_pred cCeeeecCCcEEEEEEECccCCC---eeEEEEcCeec-c---------------ceeE--E--EecCeeEEEEecCCCCc
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP---DIKWYKDDSLI-K---------------GRNI--T--YENNVARFTVVNCSESS 208 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p---~i~W~~~~~~~-~---------------~~~~--~--~~~~~~~L~i~~v~~~d 208 (803)
....+..|+.++|.|.+.|.... .+.|.|..... . ..++ . ..++...|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 44567788999999999764333 48898743211 0 0111 1 22346789999999999
Q ss_pred ceEEEEEEE
Q psy2776 209 EGRYTCKAT 217 (803)
Q Consensus 209 ~G~Y~C~a~ 217 (803)
++.|.|..+
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999654
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.075 Score=44.10 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=42.6
Q ss_pred eecCCcEEEEEEECc-cCC--CeeEEEEcCeeccceeEEE-------ecCeeEEEEecCCCCcce-EEEEEEEcC
Q psy2776 156 AGFQSSVTLECVVSG-VPT--PDIKWYKDDSLIKGRNITY-------ENNVARFTVVNCSESSEG-RYTCKATNE 219 (803)
Q Consensus 156 v~~G~~~~L~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G-~Y~C~a~n~ 219 (803)
+.+|..++++|.+.+ .|. .++.|++....+....+.- ......+++.- +.+|.| .|+|+|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 468999999999985 554 4699999877766443221 11234555555 366666 999999853
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.13 Score=43.05 Aligned_cols=62 Identities=21% Similarity=0.425 Sum_probs=37.4
Q ss_pred cCCcEEEEEEECc-cCCC-eeEEEEcCeecccee-----EEE-ecC---eeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 158 FQSSVTLECVVSG-VPTP-DIKWYKDDSLIKGRN-----ITY-ENN---VARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 158 ~G~~~~L~C~~~g-~p~p-~i~W~~~~~~~~~~~-----~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.++.++|.|.+.| .|.. .++|++++.. .... ... ++. ...|.+..-.-...-.|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3567999999998 4433 5899999987 3221 111 111 1234443322223667999999865
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=5.6 Score=41.43 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=42.4
Q ss_pred CeeeecCCcE-EEEEEECccCCC-eeEEEEcCeeccceeE------------EEe---cCeeEEEEecCCCCcceEEEEE
Q psy2776 153 DSVAGFQSSV-TLECVVSGVPTP-DIKWYKDDSLIKGRNI------------TYE---NNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 153 ~~~v~~G~~~-~L~C~~~g~p~p-~i~W~~~~~~~~~~~~------------~~~---~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
++.+..|+.. .|.|.....-.+ .+...|.+..-+...+ -+- .....+.+.|++..|.|.|+|.
T Consensus 20 nIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCI 99 (500)
T PHA02914 20 NIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCI 99 (500)
T ss_pred eEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEE
Confidence 4556667766 999998643333 4666664322111111 111 1346788999999999999998
Q ss_pred EEcCC
Q psy2776 216 ATNEA 220 (803)
Q Consensus 216 a~n~~ 220 (803)
..-..
T Consensus 100 FYLn~ 104 (500)
T PHA02914 100 FYLGD 104 (500)
T ss_pred EEeCC
Confidence 87543
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=50.51 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=51.7
Q ss_pred CCeEEEEEEEeec-----CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 687 KGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 687 g~~v~L~C~~~g~-----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
++++.+.|.+..- -...+.|++||..+...+.. +.+.|.+.-. +.-.|+|+|.|.+..-+....++|
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~--~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFS--KNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEecc--ccCCCceeEEEeecccCccEEEEE
Confidence 7899999999742 34469999999887432221 2356777663 567899999999977666677777
Q ss_pred EEEee
Q psy2776 762 TVDVE 766 (803)
Q Consensus 762 ~V~~~ 766 (803)
+-++.
T Consensus 103 k~~~~ 107 (286)
T PHA03042 103 QYVIK 107 (286)
T ss_pred EEEEE
Confidence 76543
|
|
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.068 Score=44.91 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=38.7
Q ss_pred EeecceeEEEEEEcCcC--C-CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 520 LSVKSQWKVEVKYFGFP--R-PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p--~-~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
+..+..++|.|.+.++- . ..|.|.++|.. .........+.+ .+.|.|..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 34578899999999854 3 57899999875 211001111111 13444432222223469999998754
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.1 Score=43.89 Aligned_cols=70 Identities=9% Similarity=0.107 Sum_probs=40.0
Q ss_pred eEEecCCeEEEEEEEeec--CC-CceEEeeCCeeccCCC-CeEEEeeCceEEEEEecCCCCC--Cc-eeEEEEEEccCc
Q psy2776 682 KTVKEKGTIRLMAKVKAS--PA-PSIVWFRNNKPLLSSP-KKREIFDGENIILELKEADSET--DA-GDYKVVATNELG 753 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~--p~-~~v~W~~~~~~l~~~~-~~~~~~~~~~~~L~i~~v~~~~--D~-G~Y~C~a~N~~G 753 (803)
.....++.++|.|.+.|+ |. ..|.|.++|.. .... ......++.+.....-.+ ..+ .. ..|+|.+.....
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v-~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPG-CAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEe-CHHHhcCCCeEEEEEECCCc
Confidence 334468899999999985 43 37999999875 2111 111122333333223333 221 23 449999997654
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.17 Score=49.59 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=37.5
Q ss_pred CCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 536 PRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 536 p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.+|.+.|... |..+++.....+.. .+.|.+.+...++||.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~---TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE---TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc---CceEEeeccccccCCceEEEEEEEe
Confidence 5688999875 55666555555543 4679999999999999999997553
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.16 Score=44.71 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=46.1
Q ss_pred eecceeEEEEEEcCc-----CCCeeEEeeCCeeecC--CCcEEE-----------EecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 521 SVKSQWKVEVKYFGF-----PRPEISWMKNGAEITD--SKACRI-----------FIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-----p~~~v~W~~~g~~i~~--~~~~~~-----------~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
.-+++|.|.|.+... +...++|..+|..+-. +..... ....+...|.+.....- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 447899999998652 2346899998876531 111111 01123456888775444 9999999
Q ss_pred EEcCCCCeEEEEEEEEee
Q psy2776 583 ATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 583 a~n~~g~~s~s~~l~V~~ 600 (803)
|..........+.|....
T Consensus 104 Vt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 104 VTELSREGETTIELKYRV 121 (130)
T ss_dssp EEETTEEEEEEEEEEE--
T ss_pred EEecCCCceEEEEEEEEE
Confidence 998877777888877644
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.53 Score=44.21 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=55.2
Q ss_pred ceEEeecceeEEEEEEcC-cCCCeeEEeeCCe-eec----------C--------CCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FPRPEISWMKNGA-EIT----------D--------SKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~-~i~----------~--------~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
.....+|+.+.|+|.... ....+..|+++.. .+. . ....+...+...++|+|.++.....
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 345667999999999532 2334678987432 221 0 1223444566789999999999999
Q ss_pred eEEEEEEEcCCCCe-EEEEEEEE
Q psy2776 577 STYTVTATNAAGST-SLDLSLQV 598 (803)
Q Consensus 577 G~Y~C~a~n~~g~~-s~s~~l~V 598 (803)
|=|+|+|+...+.. ...--|.|
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred CceEEEEecCCCchheeheeeeE
Confidence 99999999876553 33555555
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.73 Score=45.38 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=54.8
Q ss_pred CCcEEEEEEECcc-----CCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 159 QSSVTLECVVSGV-----PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 159 G~~~~L~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
++++.+.|.++.- ..-.+.|.+++..+...+-. +..+|.+ +.+..=.|+|+|.|.+.....+....|....
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~IeLk~~~ 106 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIELQYVI 106 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEE-eccccCCCceeEEEeecccCccEEEEEEEEE
Confidence 6899999999742 23359999998876543322 2355666 4456669999999999888778888777765
Q ss_pred eecccccc
Q psy2776 234 KEIKESAR 241 (803)
Q Consensus 234 ~~~~~~~~ 241 (803)
....+...
T Consensus 107 ~WFs~~E~ 114 (286)
T PHA03042 107 KWFTSEEI 114 (286)
T ss_pred EccChhhh
Confidence 54444433
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.55 Score=46.14 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=39.6
Q ss_pred CCCceEEee-CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 700 PAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 700 p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
..|.+.|.. +|+.+..+....+..+|. |.+.+. .+.++|.|+|..+=..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F-~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGK---LMFKNF-QESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCce---EEeecc-ccccCCceEEEEEEEe
Confidence 568899998 567777666777766555 999999 7999999999998655
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=6.9 Score=42.55 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=57.8
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+...|+|.+++..++|.|+--..+..+.... .+.|+++.......++... ..
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~---------vflvtVk~~~~~~~~~Pp~------------------~~ 183 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHS---------VFFVTVKKPPKQPQTPPAP------------------LV 183 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEE---------EEEEEecCCCcCCCCCCCC------------------cc
Confidence 34567999999999999999999887662222 4567777644433332110 11
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCcC---C--CeeEEee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP---R--PEISWMK 544 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p---~--~~v~W~~ 544 (803)
-..|..-...+...+-......+|+++.+.-...... + .++.|+.
T Consensus 184 pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 184 PQVPARHHTDFHVRGYHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred ccCCccCCceEEEecceeEEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence 1122222222333333456677899988877755432 1 3678973
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.32 Score=40.65 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCCceEEEEEeeccCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy2776 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTL 40 (803)
Q Consensus 2 ~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V 40 (803)
+..+.+|.|..+++.|+|.|...+++..|.. .+..+|.|
T Consensus 67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 67 TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4467899999999999999999999999986 33444444
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=14 Score=39.45 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=58.3
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+....|+|.+++..++|.|+--..|..|..... .+.|+++.......|++ ..
T Consensus 124 ~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~--------vflVtV~~~~~~r~p~~--------------------~~ 175 (492)
T PHA03286 124 GRGKELTILNASSQNAGIYIRYSRNGTRTAVMD--------VLVVWVSGHGRARDPTM--------------------NI 175 (492)
T ss_pred CCCCceEEeeccccccceEEEEEcCCCCcEEEE--------EEEEEEecCCCCCCCCc--------------------cc
Confidence 444679999999999999999999877666654 35667753322222221 11
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCc-----CCCeeEEee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-----PRPEISWMK 544 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-----p~~~v~W~~ 544 (803)
-.+|......+...+.......+|+++.+....... -..++.|+.
T Consensus 176 pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 176 PITPPSTRVDLSLKNFKAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred CCCCcccceEEEEecccceEecCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence 122222222334444456677889998877765421 124678973
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.2 Score=37.35 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=44.3
Q ss_pred EEEEEEECccCCCe--eEEEEcCeecc----ceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEEEEe
Q psy2776 162 VTLECVVSGVPTPD--IKWYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232 (803)
Q Consensus 162 ~~L~C~~~g~p~p~--i~W~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~ 232 (803)
+...-...+.+... ++|..+..... +.++.+......|.|+.+++.|+|.|.-.+++..|.... .+.+.|.
T Consensus 30 v~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 30 VQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 33333343445444 45543332222 235667777789999999999999999999999998643 3555543
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Probab=90.29 E-value=4.2 Score=32.68 Aligned_cols=75 Identities=44% Similarity=0.814 Sum_probs=51.5
Q ss_pred ceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEEEEEccCccCC
Q psy2776 50 PEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126 (803)
Q Consensus 50 ~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~ 126 (803)
..+......++.|+|.++.... ..+..|.+....... ..|..... ....+.|.++.+...+.++..+.+..|.+.
T Consensus 7 ~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~ 84 (93)
T cd00063 7 LRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGS-GDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESP 84 (93)
T ss_pred cEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCC-CCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCC
Confidence 3444444689999999875532 345567776655432 25655554 567889999999999999999887765543
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=4.9 Score=43.65 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=31.1
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
....|+|.+++.+++|.|+-...+..+.....+.|.|..+
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~ 171 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKP 171 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCC
Confidence 3467999999999999999999987764444566666653
|
|
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=7.9 Score=41.37 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=24.7
Q ss_pred eeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 413 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
..+++..|+. |.|.+++.+|+|.|+-.+....
T Consensus 116 ~~rvs~~n~t--l~l~~a~~~DsG~Y~L~~~~~~ 147 (540)
T PHA03282 116 PPRVAVVNGT--LVLREARETDSGMYVLSVSRAP 147 (540)
T ss_pred CcceeEecce--EEEeeccccCCceEEEEecCCC
Confidence 4455666555 9999999999999999975543
|
|
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=87.74 E-value=0.93 Score=36.66 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=26.6
Q ss_pred cceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 623 TLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
...+++.+|.+...|.|+++|.|..|.++.
T Consensus 55 ~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~ 84 (85)
T PF00041_consen 55 ETSYTITGLQPGTTYEFRVRAVNSDGEGPP 84 (85)
T ss_dssp SSEEEEESCCTTSEEEEEEEEEETTEEEEE
T ss_pred eeeeeeccCCCCCEEEEEEEEEeCCcCcCC
Confidence 458999999999999999999999997653
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.4 Score=33.99 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=42.3
Q ss_pred ceeEEecCCeEEEEEEEeec-----CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 680 EEKTVKEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~-----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
....+..|++++..|...-. ....+.|+.|+..+ +..++....++ .+.+.+.+. ....+-.|-|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~-~SsVT~~~~-~~~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDT-VSSVTLPNL-NPTGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTT-EEEEEESS---SSEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCe-EEEEEEccC-CCCCceEEEEE
Confidence 34567889999999998632 44579999999955 44555555444 377888877 44555566665
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >KOG4367|consensus | Back alignment and domain information |
|---|
Probab=86.70 E-value=1.8 Score=45.05 Aligned_cols=76 Identities=29% Similarity=0.437 Sum_probs=58.9
Q ss_pred cCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee-eeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeE
Q psy2776 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRY 133 (803)
Q Consensus 56 ~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~ 133 (803)
+..+++|.|+.|...+ .+.-+|.++..+.++. .+..+-. .+...+|..+.-...|.-|+.+.|..|.++.+....+
T Consensus 451 ~nns~t~~wkqp~~~~-~~~dg~~leld~g~~g-~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l 527 (699)
T KOG4367|consen 451 HNNSATLSWKQPPLST-VPADGYILELDDGNGG-QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 527 (699)
T ss_pred cCCceEEEeecCCCCC-CCCcceEEEeecCCCC-ceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe
Confidence 5789999999765543 6788999998887666 5555544 3677889999888888889999999998877765543
|
|
| >PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs) | Back alignment and domain information |
|---|
Probab=86.69 E-value=9 Score=31.53 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=48.2
Q ss_pred CCCeeEeccceeEEe--cC--CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 671 QAPLFIERFEEKTVK--EK--GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~--~g--~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+++|+.+....... .+ +...|.+++.+. ...+.|+.||..+..... ...+.+. ....|.|+-
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~~~----~~~~G~h~l 75 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLFWQ----PDRPGEHTL 75 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEEeC----CCCCeeEEE
Confidence 366666666554332 22 356677777666 459999999999843322 1234442 346699999
Q ss_pred EEEccCcceee
Q psy2776 747 VATNELGSATH 757 (803)
Q Consensus 747 ~a~N~~G~~~~ 757 (803)
.+....|....
T Consensus 76 ~vvD~~G~~~~ 86 (89)
T PF06832_consen 76 TVVDAQGRSAS 86 (89)
T ss_pred EEEcCCCCEEE
Confidence 99999998754
|
A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold. |
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=2.2 Score=44.19 Aligned_cols=21 Identities=14% Similarity=0.566 Sum_probs=17.8
Q ss_pred eEEEEEEEeec-CCC-ceEEeeC
Q psy2776 689 TIRLMAKVKAS-PAP-SIVWFRN 709 (803)
Q Consensus 689 ~v~L~C~~~g~-p~~-~v~W~~~ 709 (803)
.++|+|.+.|+ |.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 68999999998 443 7899999
|
|
| >PHA03281 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=9.5 Score=41.51 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=28.0
Q ss_pred eEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 416 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 416 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
+.+.++...|++.++..+++|.|.|++.-..-...+
T Consensus 468 L~~~~n~vdL~F~nApasaSGLYVfVl~yNGHVeAW 503 (642)
T PHA03281 468 LEIHDGGSALKFVDAAESLSGLYVFIIHFNGHVEAV 503 (642)
T ss_pred ccccCCCcceEeccCCcccCceEEEEEEECCeeeee
Confidence 455667777999999999999999999755444444
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=85.47 E-value=37 Score=32.87 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=28.9
Q ss_pred EEEEEeecCC--CceEEeeCCeeccCCCCeEEEee--CceEEEE---EecCCCCCCce--eEEEEEEc
Q psy2776 692 LMAKVKASPA--PSIVWFRNNKPLLSSPKKREIFD--GENIILE---LKEADSETDAG--DYKVVATN 750 (803)
Q Consensus 692 L~C~~~g~p~--~~v~W~~~~~~l~~~~~~~~~~~--~~~~~L~---i~~v~~~~D~G--~Y~C~a~N 750 (803)
.-|.+.=.|. -.+.|..++.............. +.-..+. ...+ + ...| +|+|...-
T Consensus 94 AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pl-s-~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 94 AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPL-S-DEDGPVEYTCRLIG 159 (211)
T ss_pred EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCC-C-ccCCceeEEEEEee
Confidence 3466655553 57999998876422222211111 1111222 3333 3 3445 89999874
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=84.51 E-value=5.4 Score=32.07 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=40.0
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE-EcCCCCeEEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA-TNAAGSTSLDLSLQ 597 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a-~n~~g~~s~s~~l~ 597 (803)
.+..++.+.++-.-...-.+.+.|.-.+..+... ...+........|+|.+.|.| .+..-.......|.
T Consensus 8 ~~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~~~----------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 8 NVLPCEVLELTLEKPPGMKPSLFLENPGKKSLET----------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp CEEEEEEESECEEETTTECEEEEEECSSCEEEEE----------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred CEeeeeeEEEEEcCCCCCChhheeeccCcccccc----------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 3445555555433321223567777655443221 234566777889999999999 55544444444444
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 78 v 78 (80)
T PF05790_consen 78 V 78 (80)
T ss_dssp E
T ss_pred c
Confidence 4
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=84.10 E-value=7.3 Score=31.34 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=24.6
Q ss_pred eEEEEecCCCCcceEEEEEE-EcCCcCeeeEEEEEE
Q psy2776 197 ARFTVVNCSESSEGRYTCKA-TNEAGTAETSCTLLV 231 (803)
Q Consensus 197 ~~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~s~~l~V 231 (803)
..+.+.....+|+|.+.|.| .+..-..+....|.|
T Consensus 43 ~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 43 KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 45777888999999999999 554444444455544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=83.97 E-value=2.5 Score=46.34 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=15.8
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc-cCCchhhhhcccccccccccceeeeccCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR-VKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
..|.|.+++..|+|.|+-...+..+..... .+.|.++..... ..|+.. .-.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~--------~~~v~v~~~~~~~~~p~p~--------------------~p~ 140 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQS--------VVFVTVKGPAPDPRTPPPH--------------------HPI 140 (439)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEE--------EEEEEEcCCCcCCCCCCCC--------------------CCC
Confidence 459999999999999999998776666553 345555543322 111110 111
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCcC----C--CeeEEee
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP----R--PEISWMK 544 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p----~--~~v~W~~ 544 (803)
.|..-...+...+.......+|+++.|.-...... + .+|.|+.
T Consensus 141 ~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 141 VPHRHGATFHLKNYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -----SEEEEEE--SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred CCcccccEEEEeccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 12222223333344456778899988888754332 1 3678983
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=19 Score=38.42 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=31.1
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeE-EEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETS-CTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s-~~l~V~~~ 234 (803)
....|+|.+++..++|.|+-...|..|....+ +-|.|.+.
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~ 165 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH 165 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
Confidence 34679999999999999999999887765544 45666544
|
|
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=83.57 E-value=1.1 Score=51.48 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+..|..+++.|...+.|.|...|+.++............. ......+.+ ++|.+.|..|....++.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c--~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC--RSECEVLEN--------DLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccc--cccceeeec--------hhhHHHHhhhhcCceeeeE
Confidence 446778999999999999999999998876555432111111 011112222 8999999999888777777
Q ss_pred Eeee
Q psy2776 598 VLGY 601 (803)
Q Consensus 598 V~~~ 601 (803)
+..+
T Consensus 272 ~~~p 275 (774)
T KOG1026|consen 272 VDLP 275 (774)
T ss_pred Eecc
Confidence 7554
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=82.69 E-value=10 Score=31.22 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=46.9
Q ss_pred CcCeeeecCCcEEEEEEECc-----cCCCeeEEEEcCeeccceeEEE-ecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 151 LKDSVAGFQSSVTLECVVSG-----VPTPDIKWYKDDSLIKGRNITY-ENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
++...+..|++++..|.... .....|.|..++..++...... ......+++.+.....+-.|-|....
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~ 83 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW 83 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence 34456778999999999872 2445799999999888765444 34557888888888877788886543
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=80.72 E-value=9.4 Score=38.36 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=62.3
Q ss_pred eeEEecCCeEEEEEEEeec--CCCceE-----Ee----------eCCeeccCCCCeEEEe------e---CceEEEEEec
Q psy2776 681 EKTVKEKGTIRLMAKVKAS--PAPSIV-----WF----------RNNKPLLSSPKKREIF------D---GENIILELKE 734 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~--p~~~v~-----W~----------~~~~~l~~~~~~~~~~------~---~~~~~L~i~~ 734 (803)
.+.+..|+.+++.|.+-.. |...+. |- .+|..+.++-.+.+.. + ....+|++.-
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~v 140 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFRV 140 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEEE
Confidence 3567789999999998543 444332 21 1233333332222221 1 2356677665
Q ss_pred CCCCCCceeEEEEEEccC-cceeeeEEEEEEeeccC---CCCCcccCCccceeeeeeeeEEEecc
Q psy2776 735 ADSETDAGDYKVVATNEL-GSATHGARVTVDVEKVG---RPSINSIDIDLNHVHYLAQSTEVDVT 795 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~~~~---pp~~~~~~~~~~~~~~~~~~~~~~~~ 795 (803)
+ .+-+|.|.|+..|.- |.....+.|.-+++... .|.....-...+...++|.-+|-...
T Consensus 141 ~--t~taG~Y~CvLrN~tHglv~~rf~ivtdvetL~rpD~p~Cdp~lG~~Sq~kyiWsP~P~rlr 203 (348)
T PHA03189 141 S--TSTAGMYECVLRNETHGLVLQRFVIVTDVETLRRPDEPCCDPALGRHSQGKYIWSPTPWRLR 203 (348)
T ss_pred E--ecccceEEEEeccccceeeeEEeeeeeehhhhcCCCCCCcCcccCccccCceeecCChhHhh
Confidence 4 488999999999964 66555555554554333 33433333334455666665554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 803 | ||||
| 3lcy_A | 197 | Titin Ig Tandem Domains A164-A165 Length = 197 | 1e-11 | ||
| 3lcy_A | 197 | Titin Ig Tandem Domains A164-A165 Length = 197 | 1e-04 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 3e-11 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 1e-07 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 2e-06 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 3e-11 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 9e-08 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 1e-06 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 4e-10 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 1e-07 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 5e-05 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 1e-09 | ||
| 2yux_A | 120 | Solution Structure Of 3rd Fibronectin Type Three Do | 1e-07 | ||
| 3v2a_R | 772 | Vegfr-2VEGF-A Complex Structure Length = 772 | 2e-07 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 4e-07 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 3e-05 | ||
| 2yxm_A | 100 | Crystal Structure Of I-Set Domain Of Human Myosin B | 5e-07 | ||
| 3kvq_A | 108 | Crystal Structure Of Vegfr2 Extracellular Domain D7 | 7e-07 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 8e-07 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 3e-05 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 1e-06 | ||
| 2yuw_A | 110 | Solution Structure Of 2nd Fibronectin Domain Of Slo | 1e-06 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 2e-06 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 2e-05 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 6e-04 | ||
| 2dm3_A | 110 | Solution Structure Of The Second Ig Domain Of Human | 4e-06 | ||
| 2dm3_A | 110 | Solution Structure Of The Second Ig Domain Of Human | 4e-04 | ||
| 1qz1_A | 291 | Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam | 5e-06 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 5e-06 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 5e-06 | ||
| 2kkq_A | 116 | Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom | 8e-06 | ||
| 3laf_A | 403 | Structure Of Dcc, A Netrin-1 Receptor Length = 403 | 9e-06 | ||
| 1tlk_A | 154 | X-Ray Structure Determination Of Telokin, The C-Ter | 9e-06 | ||
| 1tlk_A | 154 | X-Ray Structure Determination Of Telokin, The C-Ter | 2e-04 | ||
| 1fhg_A | 154 | High Resolution Refinement Of Telokin Length = 154 | 9e-06 | ||
| 1fhg_A | 154 | High Resolution Refinement Of Telokin Length = 154 | 2e-04 | ||
| 1x3d_A | 118 | Solution Structure Of The Fibronectin Type-Iii Doma | 1e-05 | ||
| 2j8h_A | 197 | Structure Of The Immunoglobulin Tandem Repeat A168- | 1e-05 | ||
| 2j8h_A | 197 | Structure Of The Immunoglobulin Tandem Repeat A168- | 5e-04 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 2e-05 | ||
| 2v5t_A | 189 | Crystal Structure Of Ncam2 Ig2-3 Length = 189 | 2e-05 | ||
| 2ill_A | 195 | Anomalous Substructure Of Titin-A168169 Length = 19 | 2e-05 | ||
| 2ill_A | 195 | Anomalous Substructure Of Titin-A168169 Length = 19 | 5e-04 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 2e-05 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 4e-05 | ||
| 1uey_A | 127 | Solution Structure Of The First Fibronectin Type Ii | 6e-05 | ||
| 2dju_A | 106 | Solution Structures Of The Fn3 Domain Of Human Rece | 7e-05 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-05 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-04 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-05 | ||
| 2kdg_A | 100 | Solution Structure Of The 1st Ig Domain Of Myotilin | 9e-05 | ||
| 2kdg_A | 100 | Solution Structure Of The 1st Ig Domain Of Myotilin | 2e-04 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 1e-04 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 6e-04 | ||
| 2yd6_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 1e-04 | ||
| 1bih_A | 395 | Crystal Structure Of The Insect Immune Protein Hemo | 1e-04 | ||
| 2eo9_A | 118 | Solution Structure Of The Fifth Ig-Like Domain From | 2e-04 | ||
| 1x4z_A | 121 | Solution Structure Of The 2nd Fibronectin Type Iii | 2e-04 | ||
| 3lpw_A | 197 | Crystal Structure Of The Fniii-Tandem A77-A78 From | 3e-04 | ||
| 1g1c_A | 99 | I1 Domain From Titin Length = 99 | 3e-04 | ||
| 2yr3_A | 99 | Solution Structure Of The Fourth Ig-Like Domain Fro | 4e-04 | ||
| 1cs6_A | 382 | N-terminal Fragment Of Axonin-1 From Chicken Length | 4e-04 | ||
| 1uem_A | 117 | Solution Structure Of The First Fibronectin Type Ii | 5e-04 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 6e-04 | ||
| 2xyc_A | 291 | Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | 6e-04 | ||
| 3puc_A | 99 | Atomic Resolution Structure Of Titin Domain M7 Leng | 6e-04 | ||
| 2jll_A | 389 | Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | 7e-04 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 8e-04 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 9e-04 |
| >pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197 | Back alignment and structure |
|
| >pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of Slow Type Myosin-Binding Protein C Length = 120 | Back alignment and structure |
|
| >pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding Proteinc Length = 100 | Back alignment and structure |
|
| >pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type Myosin-Binding Protein C Length = 110 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110 | Back alignment and structure |
|
| >pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110 | Back alignment and structure |
|
| >pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116 | Back alignment and structure |
|
| >pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403 | Back alignment and structure |
|
| >pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154 | Back alignment and structure |
|
| >pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154 | Back alignment and structure |
|
| >pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154 | Back alignment and structure |
|
| >pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154 | Back alignment and structure |
|
| >pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of Human Fibronectin Type-Iii Domain Containing Protein 3a Length = 118 | Back alignment and structure |
|
| >pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189 | Back alignment and structure |
|
| >pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195 | Back alignment and structure |
|
| >pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa0343 Protein Length = 127 | Back alignment and structure |
|
| >pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 106 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100 | Back alignment and structure |
|
| >pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212 | Back alignment and structure |
|
| >pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395 | Back alignment and structure |
|
| >pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118 | Back alignment and structure |
|
| >pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain From Mouse Biregional Cell Adhesion Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding Protein Length = 121 | Back alignment and structure |
|
| >pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|1G1C|A Chain A, I1 Domain From Titin Length = 99 | Back alignment and structure |
|
| >pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99 | Back alignment and structure |
|
| >pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382 | Back alignment and structure |
|
| >pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa1568 Protein Length = 117 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | Back alignment and structure |
|
| >pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99 | Back alignment and structure |
|
| >pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 7e-54
Identities = 123/859 (14%), Positives = 214/859 (24%), Gaps = 236/859 (27%)
Query: 1 MEEDSATLTIVKFEDKDL------GDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-I 52
L F +D Y N G S V + A
Sbjct: 89 QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148
Query: 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT-------- 104
+S + P DE + Y V
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWH----TDEEENYFPGAEYDGKYLVLPSGELHIR 204
Query: 105 KLTTKHEY-MFRVAAVNAIG-TGPASHNTRYVVVKAPVDAEAP--VIQEPLKDSVAGFQS 160
++ + Y ++ + + S +V+ P+ + P V S
Sbjct: 205 EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSS 264
Query: 161 SVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNV----ARFTVVNCSESSEGRYTCK 215
++ L C G P P +WYK + + + + + V + + G+Y C
Sbjct: 265 TMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 324
Query: 216 ATNEAGTAETSCTLLVQGK-EIKESARHIITARG-------------------------- 248
N G L V K G
Sbjct: 325 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 384
Query: 249 --TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAV 306
++ L I+ V ++D+ N + + E++A P
Sbjct: 385 GHSESVLRIESVKKEDKGMYQCFVRNDRESA------------EASAELKLGGRFDPP-- 430
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
T+ P + +P ++ W GK+I + R+ + T
Sbjct: 431 VIRQAFQEETMEPG-PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVN---- 485
Query: 366 KRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARF 425
V LN+ SV
Sbjct: 486 ---------GDVVSYLNITSVHA------------------------------------- 499
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLA 485
+ G Y C A ++ G AE
Sbjct: 500 -------NDGGLYKCIAKSKVGVAEH---------------------------------- 518
Query: 486 VPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN 545
+ L + P I+ ++ + + V G+P I W ++
Sbjct: 519 --------SAKLNVYGLPY---IR----QMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 546 GAEITDSKACRIFIDEETSTIAIYSVVRA-DTSTYTVTATNAAG-STSLDLSLQVLG--- 600
+ ++ ++F + T+ I +V R D +TYT A N G S L +QV+
Sbjct: 564 NRALPINRKQKVFPN---GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 601 YIIQQQEKNSLKFTKVATLD--------PSTLQYT------------------------- 627
I E+ + + TL P + +T
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLT 680
Query: 628 VENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
+E + F A N G + TT L P +I +K +
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQ-QFTTPLNVYV----------PPRWILEPTDKAFAQG 729
Query: 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK---REIFDGENIILELKEADSETDAGDY 744
++ K P P + W + K + E L + + G Y
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT-NEGYY 788
Query: 745 KVVATNELGSATHGARVTV 763
A N +GS +
Sbjct: 789 LCEAINGIGSGLSAVIMIS 807
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 190 bits (483), Expect = 1e-50
Identities = 123/799 (15%), Positives = 212/799 (26%), Gaps = 222/799 (27%)
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
+ K +F A+ A G+ + N K PV ++EP +
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPV-----FLKEPTNRIDFSNSTG 56
Query: 162 VTLECVVSGVPTPDIKWYKDD----SLIKGRNITYENNVARFTVVNCS----ESSEGRYT 213
+EC SG P P+I W + D + G + F E Y
Sbjct: 57 AEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116
Query: 214 CKATNEAGTAETSCTLLVQG---------------------------------------- 233
C A N+ G+ + +
Sbjct: 117 CLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176
Query: 234 --------KEIKESARHIITARGTQRKLVIKRVTQ-DDETDIGVLALNVKSVSKLKWLAR 284
+ ++++ G L I+ V D + +
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGE---LHIREVGPEDGYKSYQCRTKHRLTG-------- 225
Query: 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE---LSSPDIQVKWLK 341
+ L +T + AV + L + + G +T + P +W K
Sbjct: 226 -ETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYK 284
Query: 342 KGKEIKESARHIITSRGTQ--RKLVIKRVTQDDE------------TDIGVLALNVKS-- 385
+ ++ R Q L+IK +D + L V +
Sbjct: 285 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 344
Query: 386 --VSKLKWLDFGSGG-----------------WWFESKYKDDSLIKGRNITYENNVARFT 426
G W KD G+ I + +V R
Sbjct: 345 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW-----MKD-----GKAIGHSESVLRIE 394
Query: 427 VVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAV 486
+ + +G Y C N+ +AE
Sbjct: 395 --SVKKEDKGMYQCFVRNDRESAEA----------------------------------- 417
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
+ L++ P I+ + + + ++ G P PEISW +G
Sbjct: 418 -------SAELKLGGRFDPPVIR---QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDG 467
Query: 547 AEITDSKACRIFID-----EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG- 600
+I ++ ++ + S + I SV D Y A + G L V G
Sbjct: 468 KKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL 527
Query: 601 -YIIQQQ-----EKNSLKFTKVATLDPS------------------------TLQ-YTVE 629
YI Q + +L T P TL VE
Sbjct: 528 PYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE 587
Query: 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE-RFEEKTVKEKG 688
D++ Y A+N G + E+ + P I FEE +
Sbjct: 588 RNSDQATY--TCVAKNQEGYSARGSLEVQVM----------VLPRIIPFAFEEGPAQVGQ 635
Query: 689 TIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-ILELKEADSETDAGDYKV 746
+ L V P +I W + + + G +L ++ ++ AG++
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-HAGNFTC 694
Query: 747 VATNELGSATHGARVTVDV 765
A N G + V V
Sbjct: 695 HARNLAGHQQFTTPLNVYV 713
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-36
Identities = 83/546 (15%), Positives = 159/546 (29%), Gaps = 136/546 (24%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEI--KESARHIITSRGTQRKLV 364
FL + + + A + + S +P ++ W++ I+S G LV
Sbjct: 41 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LV 97
Query: 365 IKRVTQDD---ETDIGV---LALN----VKSVS-------------KLKWLDFGSGG--- 398
+D E V LA N + S + G
Sbjct: 98 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 157
Query: 399 -----------------WWFESK--YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYT 439
W + + Y + G+ + + V E Y
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG-PEDGYKSYQ 216
Query: 440 CKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499
C+ + + + + + + P + +
Sbjct: 217 CRTKHRLTGETRLS-----ATKGRLVITEPISSAVPKV---------------------V 250
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI-- 557
S + + G+P P W K T +A +
Sbjct: 251 SLAKFDMKTYSGSSTMA-----------LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLKFTK 615
+ + + T+ I V D+ Y N+ G S++ L V ++ F +
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 359
Query: 616 VATL-----------------------DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
A S L +E+++ + + +Q F N E
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL--RIESVKKEDKGMYQCFVRNDRESA-E 416
Query: 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP 712
A+ EL LG P+ + F+E+T++ ++ L +P P I W + K
Sbjct: 417 ASAEL-------KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKK 469
Query: 713 LLSSPKKR-----EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
+ ++ + + + L + D G YK +A +++G A H A++ V
Sbjct: 470 IANNDRYQVGQYVTVNGDVVSYLNITSV-HANDGGLYKCIAKSKVGVAEHSAKLNV---- 524
Query: 768 VGRPSI 773
G P I
Sbjct: 525 YGLPYI 530
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 8e-28
Identities = 69/417 (16%), Positives = 128/417 (30%), Gaps = 126/417 (30%)
Query: 405 YKD-DSLIKGRNITYENNV----ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
YK + + + + + V + + G+Y C N G
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV-------- 334
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T L + +P + +Q
Sbjct: 335 ----------------------------------ETVLTVTAPLS------AKIDPPTQT 354
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579
+ +Y G P +SWMK+G I S+ S + I SV + D Y
Sbjct: 355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMY 404
Query: 580 TVTATNAAGSTSLDLSLQVLGY----IIQQQEKN-------------------------- 609
N S L++ G +I+Q +
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE 464
Query: 610 -------------SLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
++ V S L + ++ ++ A++ VG+ E + +
Sbjct: 465 LDGKKIANNDRYQVGQYVTVNGDVVSYLN--ITSVHANDGGLYKCIAKSKVGVA-EHSAK 521
Query: 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS 716
L +I + E+K + T+ + V P SIVW R+N+ L +
Sbjct: 522 LNV-----------YGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN 570
Query: 717 PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
K++ +G L ++ + +D Y VA N+ G + AR +++V+ + P I
Sbjct: 571 RKQKVFPNGT---LIIENVERNSDQATYTCVAKNQEGYS---ARGSLEVQVMVLPRI 621
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEK-TVKEKGTIRLMAKVK 697
F A + G + L A A + P+F++ + + K
Sbjct: 14 FAAVALIACG-----SQTLAANPPDADQ----KGPVFLKEPTNRIDFSNSTGAEIECKAS 64
Query: 698 ASPAPSIVWFRNNKPLLS-SPKKREIF-DGENIILELKEADS--ETDAGDYKVVATNELG 753
+P P I+W R++ + P R+I DG+ + + D E A Y +A N+ G
Sbjct: 65 GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Query: 754 SATHGARVTVDVEKVGRPSI 773
S V V V
Sbjct: 125 SIIS---RDVHVRAVVAQYY 141
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 27/146 (18%), Positives = 43/146 (29%), Gaps = 13/146 (8%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
+ + LTI E G++T N G TT + + P P S
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSD 731
Query: 60 VTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYM 113
+ + DG KD + I T V + +E
Sbjct: 732 AKVECKA---DGFPKPQVTWKKAVGDTPGEYKD-LKKSDNIRVEEGTLHVDNIQKTNEGY 787
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAP 139
+ A+N IG+ + V+A
Sbjct: 788 YLCEAINGIGS--GLSAVIMISVQAH 811
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 2e-53
Identities = 126/703 (17%), Positives = 208/703 (29%), Gaps = 220/703 (31%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
E P EPL+ A +TL+C V G P I WYK+
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKE--------------------- 42
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDD 262
+++ + + + + LVI +V D
Sbjct: 43 ------------------------------HTKLRSAPAYKMQFKNNVASLVINKVDHSD 72
Query: 263 ETDIGV---LALN----VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315
G A N V S + L + + P F KL V
Sbjct: 73 V---GEYTCKAENSVGAVASSAVLV-----------------IKERKLPP-SFARKLKDV 111
Query: 316 TLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE- 373
F+ ++ S +QV W K G+ +K+ A + L I + Q
Sbjct: 112 H-ETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 374 -----------TDIGVLALNVKS-------VSKLKWLDFGSGG----------------W 399
T L + K +D G
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKIT 230
Query: 400 WFESKYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWP 456
W KD+ I+ +T N A TV+ ++ G+YTC A+N AG
Sbjct: 231 W----AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC----- 281
Query: 457 GLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLK 516
+ L +Q PP+ +
Sbjct: 282 -------------------------------------SAQLGVQEPPR-----FIKKLEP 299
Query: 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT 576
S+ + + E K G P ++ W K+ EI +S R+ E + + +Y++ D+
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS 359
Query: 577 STYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLKFTKVATLD-------------- 620
YT A NAAGS S SL+V ++ L+
Sbjct: 360 GDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Query: 621 ------PSTLQYTVEN-------------LRDKSEYYFQVFAENSVGLGPEATTELVALA 661
S +Y + + D EY Q A N VG + A
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY--QCKASNDVGSD-TCVGSITLKA 476
Query: 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
P F+++ + + ++L A ++ + S+ WF++ ++
Sbjct: 477 ----------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIW 526
Query: 722 I-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
I + L+ A+ +AG Y NE G+ A ++V
Sbjct: 527 ISYSENIATLQFSRAEPA-NAGKYTCQIKNEAGTQECFATLSV 568
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-48
Identities = 92/534 (17%), Positives = 171/534 (32%), Gaps = 141/534 (26%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366
F+ L V T Q ++ +P+I++ W K+ +++ + + + + LVI
Sbjct: 8 FIEPLEHVEAAIG-EPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVIN 66
Query: 367 RVTQDDE------------TDIGVLALNVKS-------VSKLKWLDFGSGG--------- 398
+V D L +K KLK + G
Sbjct: 67 KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRIN 126
Query: 399 --------WWFESKYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447
W YKD L+K ++ +NVA ++ +S G+Y C A+N G
Sbjct: 127 GSEPLQVSW-----YKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA 507
TA + + L + P
Sbjct: 182 TASS------------------------------------------SAKLTLSEHEVPPF 199
Query: 508 IKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIA 567
S L++ + G +I+W K+ EI ++ + E T+T+
Sbjct: 200 FD---LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 256
Query: 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKN---------------- 609
+ V + D YT A+N AG S L V I++ E +
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 316
Query: 610 ------------------SLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
S KF + L + NL + + A N+ G
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVL--EMYNLSVEDSGDYTCEAHNAAGS-A 373
Query: 652 EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK 711
++T L P+F ++ + + L +++ +P + W ++ +
Sbjct: 374 SSSTSLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 423
Query: 712 PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L S K + + + + + D G+Y+ A+N++GS T +T+
Sbjct: 424 ELRSGKKYKIMSENFLTSIHILNV-DSADIGEYQCKASNDVGSDTCVGSITLKA 476
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 1e-46
Identities = 102/582 (17%), Positives = 180/582 (30%), Gaps = 182/582 (31%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
+ A N++G + + V+ + + P LKD V EC ++G
Sbjct: 75 EYTCKAENSVGA--VASSAVLVIKERKL---PPSFARKLKDVHETLGFPVAFECRINGSE 129
Query: 173 TPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
+ WYKD L+K ++ +NVA ++ +S G+Y C A+N GTA +S L
Sbjct: 130 PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Query: 230 LVQ------------------------------------------GKEIKESARHIITAR 247
+ +EI+ + +T
Sbjct: 190 TLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV 249
Query: 248 GTQRKLVIKRVTQDDE------------TDIGVLALNVKSVSKLKWLARWTSDLESTAWF 295
L + +VT+ D D L V+
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------------------- 289
Query: 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHII 354
F+ KL +V ++ ++ SP+I+V W K EI+ES++ +
Sbjct: 290 ---------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM 340
Query: 355 TSRGTQRKLVIKRVTQDDETDIGVLA------------LNVKS----VSKLKWLDFGSGG 398
+ + L + ++ +D D A L VK K ++ G
Sbjct: 341 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 400
Query: 399 -----------------WWFESKYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRY 438
W +KD + K I EN + ++N + G Y
Sbjct: 401 DVHLECELQGTPPFQVSW-----HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455
Query: 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498
CKA+N+ G+ ++
Sbjct: 456 QCKASNDVGSDTC------------------------------------------VGSIT 473
Query: 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI-TDSKACRI 557
+++PP+ L V + +++ G ++W K+ EI +S I
Sbjct: 474 LKAPPR------FVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWI 527
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
E +T+ A+ YT N AG+ +L VL
Sbjct: 528 SYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 9e-44
Identities = 109/544 (20%), Positives = 181/544 (33%), Gaps = 126/544 (23%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD---TPEIV-GRS 56
+ + A+L I K + D+G+YT N++G +++ + + P + V
Sbjct: 56 FKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETL 115
Query: 57 DSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
V R G P+ G +L+ + T ++ + H
Sbjct: 116 GFPVAFECRIN---GSEPLQVSWYKDGELLKDDANLQT----SFIHNVATLQILQTDQSH 168
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
+ +A N +GT AS + + + + V P S T +C V+G
Sbjct: 169 VGQYNCSASNPLGT--ASSSAKLTLSEHEV---PPFFDLKPVSVDLALGESGTFKCHVTG 223
Query: 171 VPTPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSC 227
I W KD+ I+ +T N A TV+ ++ G+YTC A+N AG S
Sbjct: 224 TAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283
Query: 228 TLLVQ----------------------------------------GKEIKESARHIITAR 247
L VQ EI+ES++ ++
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 343
Query: 248 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVE 307
+ L + ++ +D D A N S+ + K P
Sbjct: 344 ESVAVLEMYNLSVEDSGDYTCEAHNA------------AGSASSST---SLKVKEPP--V 386
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366
F K V + D + EL +P QV W K +E++ ++ I S + I
Sbjct: 387 FRKKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL 445
Query: 367 RVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG------------ 398
V D +D V ++ +K+ V KL + G
Sbjct: 446 NVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAE 505
Query: 399 -----WWFESKYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449
W +KD I I+Y N+A ++ G+YTC+ NEAGT
Sbjct: 506 PISVAW-----FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQ 560
Query: 450 ETRT 453
E
Sbjct: 561 ECFA 564
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-27
Identities = 59/246 (23%), Positives = 89/246 (36%), Gaps = 32/246 (13%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAP----GAPDTPEIVGRS 56
E A L + +D GDYT NA G AS++T + + P + G
Sbjct: 342 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKG-- 399
Query: 57 DSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
+ V L G P L S K + M E T+ + + +
Sbjct: 400 -ADVHLECEL---QGTPPFQVSWHKDKRELRSGKKYKIMS----ENFLTSIHILNVDSAD 451
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
++ A N +G+ + +KAP P + L D V L+ + G
Sbjct: 452 IGEYQCKASNDVGS---DTCVGSITLKAP-----PRFVKKLSDISTVVGEEVQLQATIEG 503
Query: 171 VPTPDIKWYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
+ W+KD I I+Y N+A ++ G+YTC+ NEAGT E
Sbjct: 504 AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563
Query: 227 CTLLVQ 232
TL V
Sbjct: 564 ATLSVL 569
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 3e-19
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 10/135 (7%)
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 698
+ AENSVG + + P F + ++ + ++
Sbjct: 76 YTCKAENSVG---AVASS-----AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRING 127
Query: 699 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758
S + W+++ + L + F L++ + D G Y A+N LG+A+
Sbjct: 128 SEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS-HVGQYNCSASNPLGTASSS 186
Query: 759 ARVTVDVEKVGRPSI 773
A++T+ +V P
Sbjct: 187 AKLTLSEHEV-PPFF 200
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 7e-17
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
+ P FIE E I L KV +P I W++ + L S+P + F L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ + D D G+Y A N +G+ A + + K+ PS
Sbjct: 64 VINKVDHS-DVGEYTCKAENSVGAVASSAVLVIKERKL-PPSF 104
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 6e-43
Identities = 103/842 (12%), Positives = 203/842 (24%), Gaps = 215/842 (25%)
Query: 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE------IVGRSDS 58
TLTI K D G Y + V +P + I +
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNK 144
Query: 59 SVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
+V + + V+ + + + + + M A
Sbjct: 145 TVVIPCLGS--ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEA 202
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
+ VVV V+ P + L C I +
Sbjct: 203 KINDES--YQSIMYIVVVVGY--RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 258
Query: 179 YKDDSLIKGR-------------NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
+ K + + ++ T+ + S +G YTC A++ T +
Sbjct: 259 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 318
Query: 226 SCTLLVQGKEIKE----------------------------------------SARHIIT 245
S + V K + H I
Sbjct: 319 STFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK 378
Query: 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305
A L I V++ D + V+ N S K + P
Sbjct: 379 AGHV---LTIMEVSERDTGNYTVILTNPISKEKQSHVVS-------------LVVYVPPQ 422
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELSS--PDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
+ S + V + T + + P + W + +E + S
Sbjct: 423 IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPC 482
Query: 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVA 423
R + F+ K + + N
Sbjct: 483 EEWRSVE-----------------------------DFQGGNKIEVNKNQFALIEGKNKT 513
Query: 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQK 483
T+V + + Y C+A N+ G E
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGE--------------------------------- 540
Query: 484 LAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWM 543
R + + P+ + + + + + ++W
Sbjct: 541 ---------RVISFHVTRGPEI-------TLQPDMQPTEQESVSLWCTADRSTFENLTWY 584
Query: 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYII 603
K G + + + ++ + S T
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNST----------------------- 621
Query: 604 QQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
+ ++ +L+D+ +Y A++ + +
Sbjct: 622 --NDILIMELKNA-------------SLQDQGDYVCL--AQDRKTKKRHCVVRQLTV--- 661
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
AP E +T +I + +P P I+WF++N+ L+ +
Sbjct: 662 ----LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVL 715
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHV 783
N L ++ E D G Y A + LG A A ++ G +++ +H
Sbjct: 716 KDGNRNLTIRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIE----GAQEKTNLERTHHHH 770
Query: 784 HY 785
H+
Sbjct: 771 HH 772
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 1e-37
Identities = 81/662 (12%), Positives = 167/662 (25%), Gaps = 115/662 (17%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP------------ 50
+ TI + G + + ++ D
Sbjct: 180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 239
Query: 51 -------EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
+ + +W P ++++ +T +
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG-----SEMKKFLSTLTI 294
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT 163
+T + ++ AA + + T ++T V + P A V
Sbjct: 295 DGVTRSDQGLYTCAASSGLMT--KKNSTFVRVHEKPF---VAFGSGMESLVEATVGERVR 349
Query: 164 LECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
+ G P P+IKWYK+ ++ + +V T++ SE G YT TN
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTNPISKE 407
Query: 224 ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283
+ S + + + + + + + + + W
Sbjct: 408 KQSHVVSLVVYVPPQIGEKSLISP-------VDSYQYGTTQTLTCTVYAIPPPHHIHWYW 460
Query: 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKG 343
+ + + + P E+ S + + + V L
Sbjct: 461 QLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQ 520
Query: 344 K----------------EIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVS 387
+ +T + T+ + + A +
Sbjct: 521 AANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADR-STFE 579
Query: 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARF----------TVVNCSESSEGR 437
L W G + K + ++ N F + N S +G
Sbjct: 580 NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGD 639
Query: 438 YTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497
Y C A +
Sbjct: 640 YVCLAQDRKTKKRH------------------------------------------CVVR 657
Query: 498 QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI 557
Q+ + + NL++Q S+ +V G P P+I W K+ + + I
Sbjct: 658 QLTVLERVAPT--ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GI 713
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVA 617
+ + + I V + D YT A + G ++ + G QEK +L+ T
Sbjct: 714 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA----QEKTNLERTHHH 769
Query: 618 TL 619
Sbjct: 770 HH 771
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-31
Identities = 90/676 (13%), Positives = 173/676 (25%), Gaps = 160/676 (23%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
++ A G S V + P + +++ + C G
Sbjct: 11 LWLCVETRAASVGLPS-----------VSLDLPRLSIQKDILTIKANTTLQITC--RGQR 57
Query: 173 TPDIKWYKDDSLIKGRNITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
D W + S + R E + T+ + G Y C +
Sbjct: 58 DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117
Query: 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSD 288
+ I + Q +V ++ V+ S+
Sbjct: 118 VQDYRSP-------FIASVSDQHGVVYITENKNKTV---VIPCLGSI-----------SN 156
Query: 289 LESTAWFWWFESKSTPAVEFLSKLPSVTLV---PHLGDA---------TFQVELSSPDIQ 336
L + + E + P +S + A + S I
Sbjct: 157 LNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216
Query: 337 VKWLKKGKEIKESARHIIT-SRGTQRKLVIK-RVTQDDETDIGVLALNVKSVSKLKWLDF 394
V + ++ S H I S G KLV+ + I +
Sbjct: 217 VVVGYRIYDVVLSPSHGIELSVG--EKLVLNCTARTELNVGI-------------DFNWE 261
Query: 395 GSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
K + L + ++ T+ + S +G YTC A++ T +
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN--- 318
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
+T +++ P +
Sbjct: 319 ---------------------------------------STFVRVHEKPF---VAFGSGM 336
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+V + ++ KY G+P PEI W KNG + + + + I V
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSER 391
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
DT YTV TN + ++ Y+ + +L V++ +
Sbjct: 392 DTGNYTVILTNPISKEKQSHVVSLVVYV-------------PPQIGEKSLISPVDSYQYG 438
Query: 635 SEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE----RFEEKTVKEKGTI 690
+ P P I EE + +
Sbjct: 439 TTQTLTCTVY----------------------AIP--PPHHIHWYWQLEEECANEPSQAV 474
Query: 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN-IILELKEADSETDAGDYKVVAT 749
+ S+ F+ + + + + +G+N + L + + YK A
Sbjct: 475 SVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAV 533
Query: 750 NELGSATHGARVTVDV 765
N++G V
Sbjct: 534 NKVGRGERVISFHVTR 549
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 8e-29
Identities = 46/256 (17%), Positives = 87/256 (33%), Gaps = 28/256 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ T+V Y N +G+ + P P++ SV+
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVS 568
Query: 62 LH------------WRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTSTTYEVTKLT 107
L W G + K+ +W N +++T ++ +
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628
Query: 108 TKH-------EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
K+ +Y+ A + R + V AP I L++
Sbjct: 629 LKNASLQDQGDYVCL--AQDRKTKKRHCVV-RQLTVLER---VAPTITGNLENQTTSIGE 682
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S+ + C SG P P I W+KD+ + I ++ T+ + EG YTC+A +
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 220 AGTAETSCTLLVQGKE 235
G A+ +++G +
Sbjct: 743 LGCAKVEAFFIIEGAQ 758
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 96.4 bits (239), Expect = 1e-20
Identities = 59/456 (12%), Positives = 114/456 (25%), Gaps = 114/456 (25%)
Query: 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438
L + + L WL W ++ + ++ + T+ + G Y
Sbjct: 49 LQITCRGQRDLDWL-------WPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAY 101
Query: 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498
C + Y +
Sbjct: 102 KCFYRETDLASVIYV------------------------------------YVQDYRSPF 125
Query: 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF 558
I S Q + + N K++ + + + + D RI
Sbjct: 126 IASVSDQHGVVYITEN-KNKTVVIP----CLGSISNLNVSLCARYPEKRFVPDGN--RIS 178
Query: 559 IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV-LGYIIQQQEKNSLKFTKV- 616
D + I S + + A S + + V +GY I + ++
Sbjct: 179 WDSK-KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 237
Query: 617 ----ATLD---------------------PSTLQYTVENLRDKSEYYFQVF--------- 642
L+ + +L+ +S + F
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 643 -----------AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691
A + + + +T + + +R
Sbjct: 298 TRSDQGLYTCAASSGLMTK-KNSTFV-------RVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751
+ AK P P I W++N PL S+ + +L + E SE D G+Y V+ TN
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEV-SERDTGNYTVILTNP 403
Query: 752 LGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLA 787
+ V++ V P I + Y
Sbjct: 404 ISKEKQSHVVSLVVY--VPPQIGEKSLISPVDSYQY 437
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 4e-16
Identities = 34/387 (8%), Positives = 79/387 (20%), Gaps = 113/387 (29%)
Query: 436 GRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495
+ C T A + P
Sbjct: 10 ALWLCVETRAASVGL------------------PSVSLDLP------------------- 32
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC 555
++ IK + +++ G + W N +
Sbjct: 33 --RLSIQKDILTIKANTT--------------LQITCRGQRDLDWLWPNNQSGSEQRVEV 76
Query: 556 RIFIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLK 612
D T+ I V+ DT Y ++ + + +Q +I +++ +
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 613 FTKVATLDPSTLQ-----------------------------------YTVENLRDKSEY 637
+ + +T+ +
Sbjct: 137 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 196
Query: 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK 697
A+ + ++ + + + + + L +
Sbjct: 197 MVFCEAKINDE-------SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
Query: 698 ASPAPSIVWFRNNKPLLSSPKKREIFDG----------ENIILELKEADSETDAGDYKVV 747
I + KK D L + D G Y
Sbjct: 250 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS-DQGLYTCA 308
Query: 748 ATNELGSATHGARVTVDVEKVGRPSIN 774
A++ L + + V V +P +
Sbjct: 309 ASSGLMTKKNSTFVRV----HEKPFVA 331
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 1e-14
Identities = 25/224 (11%), Positives = 64/224 (28%), Gaps = 21/224 (9%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPG-APDTPEIVGRSDSSVTLHWRPPQDDGHSPV 75
+ + + A + L P + + ++++++ + R G +
Sbjct: 8 AVALWLCVETRAASVGLPSVS---LDLPRLSIQKDILTIKANTTLQITCR-----GQRDL 59
Query: 76 T----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
S + E + T + K+ ++ S
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKT-LTIPKVIGNDTGAYKCFYRETDLA---SVIY 115
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS---LIKGR 188
YV + Q + +V + C+ S + + G
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 189 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
I++++ FT+ + S G C+A + ++ ++V
Sbjct: 176 RISWDSK-KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 8/119 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-I 729
P + + T+K T+++ + +W N + E DG
Sbjct: 30 DLPRLSIQKDILTIKANTTLQI--TCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT 87
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLAQ 788
L + + D G YK ++ V P I S+ V+
Sbjct: 88 LTIPKV-IGNDTGAYKCFYRETDLASVIYVYVQD----YRSPFIASVSDQHGVVYITEN 141
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-39
Identities = 54/363 (14%), Positives = 102/363 (28%), Gaps = 91/363 (25%)
Query: 405 YKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463
YKD+ I +++ + + S+ G Y ++ G ++R L +V
Sbjct: 42 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR-------LKLV 94
Query: 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523
+ + ++ A+ D ++S ++
Sbjct: 95 D-------EAFKEL---------------------MMEVCKKIALSATDLKIQSTAEGIQ 126
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
V +++W NG+ I S + + E + I D Y +
Sbjct: 127 LYSFVTY---YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 584 TNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFA 643
+ + L Y E LK
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLK------------------------------- 212
Query: 644 ENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 703
A + +A + + T++E + L V P P
Sbjct: 213 -------------------QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 704 IVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
+ W +N K L S F+ G + + D+G Y +V N+ GS T V+
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVS 312
Query: 763 VDV 765
V +
Sbjct: 313 VFI 315
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 47/288 (16%), Positives = 80/288 (27%), Gaps = 59/288 (20%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIK-GRNITYENNVARFT 200
P E L V G + +V L+C V+ + I WYKD+ I +++ +
Sbjct: 6 TGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 64
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQG-KEIKESARHIITARGTQRK------- 252
+ S+ G Y ++ G ++ L+ + KE+ I T K
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEG 124
Query: 253 -----------------------------------------LVIKRVTQDDETDIGVLAL 271
L I T +D+ +
Sbjct: 125 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 184
Query: 272 N----VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQ 327
+ + L A + E ++ A L LP V +
Sbjct: 185 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRA-RVLGGLPDVVTIQEGKALNLT 243
Query: 328 VELS-SPDIQVKWLKKGKEIKESARHIIT-SRGTQRKLVIKRVTQDDE 373
+ P +V WLK K + + G I V+ D
Sbjct: 244 CNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 48/262 (18%), Positives = 94/262 (35%), Gaps = 27/262 (10%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
++ TL I +F KD G Y + L + G+ + K+ + + S +
Sbjct: 56 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115
Query: 60 VTLHWRPPQDDGHSPVTGYVLE-----SHDKDEFMVWNKIETTST----TYEVTKLTTKH 110
+ + +S VT YV + SH+ ++++T T ++ + T
Sbjct: 116 LKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPND 175
Query: 111 EYMFRVAAVNAIGT----------GPASHNTRYVVVKAPVDAE---APVIQEPLKDSVAG 157
+ + + + + +K AE A V+
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYE-NNVARFTVVNCSESSEGRYT 213
++ L C V G P P++ W K++ + N+ +E A FT+ S + G+Y
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 214 CKATNEAGTAETSCTLLVQGKE 235
N+ G+ + T+ V E
Sbjct: 296 LVVKNKYGSETSDFTVSVFIPE 317
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-26
Identities = 44/322 (13%), Positives = 86/322 (26%), Gaps = 73/322 (22%)
Query: 322 GDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------ 373
+ +V + + W K +EI +H L+I ++ D
Sbjct: 22 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT--LLITEFSKKDAGIYEVI 79
Query: 374 ------TDIGVLALNVKSV---------------SKLKWLDFGSGGWWFESK-------- 404
D L L ++ + LK G +
Sbjct: 80 LKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLK 139
Query: 405 ---YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
+ S I+ R + + + +G+Y + + + +
Sbjct: 140 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-----V 194
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
LS + + +K + P
Sbjct: 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARV----------LGGLP------------DVV 232
Query: 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTS 577
+ + +G P PE+SW+KN + C + + T+ I V AD+
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSG 292
Query: 578 TYTVTATNAAGSTSLDLSLQVL 599
Y + N GS + D ++ V
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVF 314
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 8e-14
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGEN 727
P P F+E + V + + L KV IVW+++ + + S ++ F
Sbjct: 4 PFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGI 60
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + E + DAG Y+V+ ++ G ++ +
Sbjct: 61 CTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDEA 97
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 5e-37
Identities = 57/299 (19%), Positives = 108/299 (36%), Gaps = 56/299 (18%)
Query: 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID 560
+PP D S L++ + G +I+W K+ EI ++ +
Sbjct: 4 APPF------FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV 57
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQE----------- 607
E T+T+ + V + D YT A+N AG S L V I++ E
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 117
Query: 608 -----------------------KNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644
+ S KF + L+ ++ D +Y A
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY--TCEAH 175
Query: 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 704
N+ G ++T L P+F ++ + + L +++ +P +
Sbjct: 176 NAAGSA-SSSTSLKVKE----------PPVFRKKPHPVETLKGADVHLECELQGTPPFQV 224
Query: 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
W ++ + L S K + + + + + DS D G+Y+ A+N++GS T +T+
Sbjct: 225 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTCVGSITL 282
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 59/279 (21%), Positives = 89/279 (31%), Gaps = 70/279 (25%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARF 199
P S T +C V+G I W KD+ I+ +T N A
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ--------------------------- 232
TV+ ++ G+YTC A+N AG S L VQ
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 233 -------------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV---LALNVK-S 275
EI+ES++ ++ + L + ++ +D G A N S
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS---GDYTCEAHNAAGS 180
Query: 276 VSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPD 334
S L + K P F K V + D + EL +P
Sbjct: 181 ASSSTSL----------------KVKEPP--VFRKKPHPVETLKG-ADVHLECELQGTPP 221
Query: 335 IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
QV W K +E++ ++ I S + I V D
Sbjct: 222 FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 9e-32
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 32/247 (12%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG--APDTPEIVGRSDS 58
+ E++ATLT++K D G YT SN G+ S + ++ + P P + + D
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDE 115
Query: 59 SVTLHWR-----PPQDDGHSPVT----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK 109
+ + V ++ K + E+ L+ +
Sbjct: 116 HTRYECKIGGSPEIK------VLWYKDETEIQESSKFRM----SFVESVAVLEMYNLSVE 165
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169
+ A NA G+ AS +T + VK P PV ++ + V LEC +
Sbjct: 166 DSGDYTCEAHNAAGS--ASSST-SLKVKEP-----PVFRKKPHPVETLKGADVHLECELQ 217
Query: 170 GVPTPDIKWYKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
G P + W+KD ++ I EN + ++N + G Y CKA+N+ G+
Sbjct: 218 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 227 CTLLVQG 233
++ ++
Sbjct: 278 GSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 64/332 (19%), Positives = 112/332 (33%), Gaps = 92/332 (27%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
F K SV L TF+ ++ + I++ W K +EI+ + +T L +
Sbjct: 7 FFDLKPVSVDLALG-ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 366 KRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG----------- 398
+VT+ D D L V+ + KL+
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 399 -------WWFESKYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
W YKD++ I+ +++ +VA + N S G YTC+A N AG+
Sbjct: 126 SPEIKVLW-----YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAI 508
A + +T+L+++ PP
Sbjct: 181 ASS------------------------------------------STSLKVKEPPV---- 194
Query: 509 KLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAI 568
+ +E + G P ++SW K+ E+ K +I + ++I I
Sbjct: 195 --FRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 252
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V AD Y A+N GS + S+ +
Sbjct: 253 LNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 44/214 (20%), Positives = 76/214 (35%), Gaps = 51/214 (23%)
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK 152
+ + T V K+T + A N G S + + + V+ P P + L+
Sbjct: 55 TLVENTATLTVLKVTKGDAGQYTCYASNVAGK--DSCSAQ-LGVQEP-----PRFIKKLE 106
Query: 153 DSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESS 208
S Q EC + G P + WYKD++ I+ +++ +VA + N S
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 209 EGRYTCKATNEAGTAETSCTLLVQ------------------------------------ 232
G YTC+A N AG+A +S +L V+
Sbjct: 167 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSW 226
Query: 233 ---GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
+E++ ++ I + + I V D
Sbjct: 227 HKDKRELRSGKKYKIMSENFLTSIHILNVDSADI 260
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 7e-18
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P F + + + V + I W ++N+ + + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ + DAG Y A+N G + A++ V
Sbjct: 65 VLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQE 97
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 4e-17
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFE-EKTVKEKGTIRLMAKVK 697
+ +A N G + + L P FI++ E + VK+ R K+
Sbjct: 76 YTCYASNVAG---KDSCS-AQLGVQE-------PPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 698 ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 757
SP ++W+++ + S K R F +LE+ S D+GDY A N GSA+
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASS 183
Query: 758 GARVTVDV 765
+ V
Sbjct: 184 STSLKVKE 191
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 2/149 (1%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ + E KD G Y + N G T ++ + P P ++ S SV
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVN 216
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT-STTYEVTKLTTKHEYMFRVAAVN 120
L W P DG S +T Y++E W ++ T Y V L K Y FRV A N
Sbjct: 217 LTWTEPASDGGSKITNYIVEKCATTA-ERWLRVGQARETRYTVINLFGKTSYQFRVIAEN 275
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQE 149
G S + + K +E
Sbjct: 276 KFGLSKPSEPSEPTITKEDKTRAMNYDEE 304
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 48/288 (16%), Positives = 90/288 (31%), Gaps = 86/288 (29%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
Y+ I + Y + + + + ++ Y +ATN+ G+
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG-------- 90
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T +L+++ P + K ++ + +
Sbjct: 91 ----------------------------------TASLEVEVPAKIHLPKTLE-GMGAVH 115
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTST 578
+++ + G P P I+W K I ++ ++ + TS + V R D
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 579 YTVTATNAAGSTSLDLSLQV-----------------------------------LGYII 603
Y V A N G + L V YI+
Sbjct: 176 YVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV 235
Query: 604 QQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ + ++ +V +YTV NL K+ Y F+V AEN GL
Sbjct: 236 EKCATTAERWLRVGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSK 281
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 9e-22
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 7/139 (5%)
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
+ +T +++V A N G+ + + V+ P P E + A
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGT---ASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVARFTVVNCSESS-EGRYTCK 215
V+++ SG P P I W K LI + + N E G Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 216 ATNEAGTAETSCTLLVQGK 234
A N G + + L V
Sbjct: 180 AKNRFGIDQKTVELDVADV 198
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 4e-21
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
A AP +E L++ +QS+ TL C V+G P P +KWY+ I + Y +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + + ++ Y +ATN+ G+ + +L V+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 8e-17
Identities = 29/159 (18%), Positives = 45/159 (28%), Gaps = 12/159 (7%)
Query: 615 KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL-VALATHATLGSPGQAP 673
++ Q + ++ D +QV A N G T L V + L P
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHL------P 105
Query: 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 733
+E + + P P I W + + ++ + I L
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165
Query: 734 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
DAG Y V A N G + V P
Sbjct: 166 NGVERKDAGFYVVCAKNRFGIDQKTVELDV----ADVPD 200
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 727
AP F E V+ + L+ KV P P + W+R K +++ K I F G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 62 HQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEV 98
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 42/210 (20%), Positives = 64/210 (30%), Gaps = 46/210 (21%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESAR--HIITSRGTQRKL 363
F +L ++ + +AT +++ P VKW ++GKEI I +G +L
Sbjct: 6 HFKEELRNLNVRYQ-SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 364 VIKRVTQDDETDIGVLALN------------VKSVSKLKWLDFGSGGWWFESK------- 404
+I VT DD T V A N V+ +K+ G +
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 405 --------------YKDDSLI---KGRNITYENNVARFTVVNCSESS-EGRYTCKATNEA 446
K LI + + N E G Y A N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 447 GTAETRTM-----WPGLPLSIVVSLRKADT 471
G + P P + VS D+
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDS 214
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT-DSKACRIFI 559
P L++ + +S + K G P+P + W + G EI D RI
Sbjct: 3 MAPH------FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQE 56
Query: 560 DE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ + I SV D + Y V ATN GS S SL+V
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-34
Identities = 103/655 (15%), Positives = 183/655 (27%), Gaps = 163/655 (24%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
V L WYK + + R I + + + Y
Sbjct: 15 KEVLLLVHNLPQHLFGYSWYKGERVDGNRQII------GYVIGTQQATPGPAY------- 61
Query: 220 AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279
S R II + L+I+ + Q+D + + V++
Sbjct: 62 -------------------SGREIIYPNAS---LLIQNIIQNDTGFYTLHVIKSDLVNE- 98
Query: 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKW 339
E+T F + P++ + V F E + D W
Sbjct: 99 ----------EATGQFRVYPELPKPSIS----SNNSKPVEDKDAVAFTCEPETQDATYLW 144
Query: 340 LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV---LALNVKSVSKLKW--LDF 394
+ + S R +++ R L + VT++D N S + L+
Sbjct: 145 WVNNQSLPVSPRLQLSNGN--RTLTLFNVTRNDT---ASYKCETQNPVSARRSDSVILNV 199
Query: 395 GSGGWWFESKYKDDSLIKGRNIT---------------YENNVA-----RFTVVNCSESS 434
G + S G N+ + N + N + ++
Sbjct: 200 LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNN 259
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
G YTC+A N +T
Sbjct: 260 SGSYTCQAHNSDTGLN----------------------------------------RTTV 279
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
T + + + P +P I ++ S + + + + W N + S
Sbjct: 280 TTITVYAEPPKPFI----TSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSP- 333
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVLG--YIIQQQEKN-- 609
R+ + + T+ + SV R D Y N S + L VL
Sbjct: 334 -RLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY 392
Query: 610 -----SLKFTKVATLDP--------------STLQYTVENLRDKSEYYFQVFAENSVGLG 650
+L + A +P T + + N+ +K+ + A NS G
Sbjct: 393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSAS-G 451
Query: 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN 710
TT S I K V++K + + +A + +W+ N
Sbjct: 452 HSRTTVKTITV------SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNG 504
Query: 711 KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ L SP+ + N L L + DA Y N + + VT+DV
Sbjct: 505 QSLPVSPRLQLSNG--NRTLTLFNV-TRNDARAYVCGIQNSVSANRSDP-VTLDV 555
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-30
Identities = 84/687 (12%), Positives = 157/687 (22%), Gaps = 209/687 (30%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDT---PEIVGRSDSS 59
+A+L I D G YT+ + + AT + + P +
Sbjct: 69 PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128
Query: 60 VTLHWRPPQDDGHSPVT-----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
V P L + ++ + T + +T +
Sbjct: 129 VAFTCEPE---TQDATYLWWVNNQSLPVSPR------LQLSNGNRTLTLFNVTRNDTASY 179
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
+ N + S + V+ P ++ ++ L C + P
Sbjct: 180 KCETQNPVSA-RRSDSVILNVLYGP-----DAPTISPLNTSYRSGENLNLSCHAASNPPA 233
Query: 175 DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ-- 232
W+ + + + + N + ++ G YTC+A N + +
Sbjct: 234 QYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 233 ----------------------------------------GKEIKESARHIITARGTQRK 252
+ + S R ++ R
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDN--RT 343
Query: 253 LVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKL 312
L + VT++D N SV ++ T
Sbjct: 344 LTLLSVTRNDVGPYECGIQNELSVD---HSDPVILNVLYGPDDPTISPSYTYYRP----- 395
Query: 313 PSVTLVPHLG-DATFQVELSS-PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ 370
G + + +S P Q WL G + + ++L I +T+
Sbjct: 396 ---------GVNLSLSCHAASNPPAQYSWLIDGNIQQHT-----------QELFISNITE 435
Query: 371 DDE------------TDIGVLALNVKSVSKLKW------------------LDFGSGG-- 398
+ + ++L
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQN 495
Query: 399 ----WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
WW SL + N T+ N + + Y C N + +
Sbjct: 496 TTYLWWV----NGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPV 551
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
L + P P I DS+
Sbjct: 552 T-----------------------------------------LDVLYGPDTPIISPPDSS 570
Query: 515 LKSQ---RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV 571
S LS S P P+ SW NG T + I +
Sbjct: 571 YLSGANLNLSCHSA--------SNPSPQYSWRINGIPQQ-----------HTQVLFIAKI 611
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQV 598
+ TY +N A + + +
Sbjct: 612 TPNNNGTYACFVSNLATGRNNSIVKSI 638
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-29
Identities = 80/596 (13%), Positives = 154/596 (25%), Gaps = 126/596 (21%)
Query: 61 TLHW-RPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVA 117
W + + DG+ + GYV+ + ++ E + + + + + +
Sbjct: 30 GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLH 89
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
+ + + V + P + +V C
Sbjct: 90 VIKSDLVNEEATGQFRVYPELP-----KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYL 143
Query: 178 WYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE-TSCTLLVQG-- 233
W+ ++ SL + N T+ N + + Y C+ N S L V
Sbjct: 144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGP 203
Query: 234 KEIKESARHIITARG---------------------------TQRKLVIKRVTQDDETDI 266
S + G + ++L I +T ++
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSY 263
Query: 267 GVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATF 326
A N + T+ T + + V
Sbjct: 264 TCQAHNSDTG------LNRTTVTTITV--------YAEPPKPFITSNNSNPVEDEDAVAL 309
Query: 327 QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV--K 384
E + W + + S R +++ R L + VT++D N
Sbjct: 310 TCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSV 367
Query: 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNIT--------------------YENNVAR 424
S L+ G G N++ + +
Sbjct: 368 DHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE 427
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKL 484
+ N +E + G YTC+A N A
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHS---------------------------------- 453
Query: 485 AVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK 544
RTT I + P + +N S+ + K + W
Sbjct: 454 --------RTTVKTITVSAELPKPSISSNN--SKPVEDKDAVAFTCEPEAQNTT-YLWWV 502
Query: 545 NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVL 599
NG + S R+ + T+ +++V R D Y N+ + S ++L VL
Sbjct: 503 NGQSLPVSP--RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 1e-26
Identities = 78/526 (14%), Positives = 139/526 (26%), Gaps = 104/526 (19%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTP--EIVGRSD 57
+ + TLT+ D Y N + S + + +L P AP RS
Sbjct: 159 LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG 218
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---NKIETTSTTYEVTKLTTKHEYMF 114
++ L + P W + ++ + +T + +
Sbjct: 219 ENLNLSCHAA---SNPPAQ------------YSWFVNGTFQQSTQELFIPNITVNNSGSY 263
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
A N+ + T V P + + +V L C T
Sbjct: 264 TCQAHNSDTGLNRTTVTTITVYAEP----PKPFITSNNSNPVEDEDAVALTCEPEIQNTT 319
Query: 175 DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG- 233
+ W + SL + N+ T+++ + + G Y C NE + +L
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY 379
Query: 234 --KEIKESARHIITARGTQ---------------------------RKLVIKRVTQDDET 264
+ S + G ++L I +T+ +
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSG 439
Query: 265 DIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDA 324
A N S T S P + + V
Sbjct: 440 LYTCQANNSA------------SGHSRTTVKTITVSAELP--KPSISSNNSKPVEDKDAV 485
Query: 325 TFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV---LAL 381
F E + + W G+ + S R +++ R L + VT++D
Sbjct: 486 AFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNVTRNDA---RAYVCGIQ 540
Query: 382 NV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYE-------------------- 419
N + S LD G D S + G N+
Sbjct: 541 NSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ 600
Query: 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465
+ + + ++ G Y C +N A SI VS
Sbjct: 601 QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSI-----VKSITVS 641
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 6e-22
Identities = 49/417 (11%), Positives = 105/417 (25%), Gaps = 126/417 (30%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
WW + SL + N T+ N + + Y C+ N
Sbjct: 144 WWV----NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR--------- 190
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLK-- 516
++ + L + P P I ++++ +
Sbjct: 191 --------------------------------RSDSVILNVLYGPDAPTISPLNTSYRSG 218
Query: 517 -SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
+ LS + P + SW NG T + I ++ +
Sbjct: 219 ENLNLSCHAA--------SNPPAQYSWFVNGTFQQS-----------TQELFIPNITVNN 259
Query: 576 TSTYTVTATNAAGST--SLDLSLQVLGYIIQQ----------QEKNSLKFTKVATLDPST 623
+ +YT A N+ + ++ V + ++++++ T + +T
Sbjct: 260 SGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT 319
Query: 624 LQYTVEN------------------------LRDKSEYYFQVFAENSVGLGPEATTELVA 659
+ V N D Y + +N + ++ V
Sbjct: 320 YLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY--ECGIQNELS---VDHSDPVI 374
Query: 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 719
L + + L ++P W + + +
Sbjct: 375 LNVLYG------PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE- 427
Query: 720 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSI 776
L + +E ++G Y A N + T+ V S
Sbjct: 428 ----------LFISNI-TEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 8e-18
Identities = 65/395 (16%), Positives = 112/395 (28%), Gaps = 89/395 (22%)
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472
GR I Y N A + N ++ G YT E T
Sbjct: 63 GREIIYPN--ASLLIQNIIQNDTGFYTLHVIKSDLVNEEAT------------------- 101
Query: 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532
Q + P+ P + +N S+ + K +
Sbjct: 102 ------------------------GQFRVYPELPKPSISSNN--SKPVEDKDAVAFTCEP 135
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TS 591
W N + S R+ + T+ +++V R DT++Y N + S
Sbjct: 136 ETQD-ATYLWWVNNQSLPVSP--RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRS 192
Query: 592 LDLSLQVLG---YIIQQQEKNSLKFTKVATLD--------------------PSTLQYTV 628
+ L VL S + + L ST + +
Sbjct: 193 DSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFI 252
Query: 629 ENLR--DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686
N+ + Y A NS + T P FI V++
Sbjct: 253 PNITVNNSGSYT--CQAHNSDT-----GLNRTTVTTITVYAEP--PKPFITSNNSNPVED 303
Query: 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746
+ + L + + + +W+ NN+ L SP+ + +N L L + D G Y+
Sbjct: 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQ--LSNDNRTLTLLSV-TRNDVGPYEC 359
Query: 747 VATNELGSATHGARVTVDVEKVGRPSINSIDIDLN 781
NEL + + P+I+
Sbjct: 360 GIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 32/292 (10%), Positives = 67/292 (22%), Gaps = 75/292 (25%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEE----------------TSTIAIYSVVRADTS 577
SW K + + I + +++ I ++++ DT
Sbjct: 25 PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTG 84
Query: 578 TYTVTATNAAGST---SLDLSLQVLG--YIIQQQEKNSLKFTKVATL------------- 619
YT+ + + + I ++
Sbjct: 85 FYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLW 144
Query: 620 ---------------DPSTLQYTVENLR--DKSEYYFQVFAENSVGLGPEATTELVALAT 662
T+ N+ D + Y + +N V +
Sbjct: 145 WVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY--KCETQNPVS---------ARRSD 193
Query: 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 722
L + + + L ++P WF N S+ +
Sbjct: 194 SVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE---- 249
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV-EKVGRPSI 773
L + ++G Y A N T+ V + +P I
Sbjct: 250 -------LFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFI 293
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-33
Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 22/235 (9%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
L I D D G Y + +N +G + L P +P +I+ S ++ +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKV 214
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVN 120
+ P G P+ Y ++ + +W + + T + L Y RVAAVN
Sbjct: 215 SFNKPDSHGGVPIHHYQVDVKEVAS-EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVN 273
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD----- 175
G G S + PV +P +S D
Sbjct: 274 GKGQGDYSKIE--IFQTLPVREPSPP-----SIHGQPSSGK---SFKLSITKQDDGGAPI 323
Query: 176 ----IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226
+K+ D + + N + + + A N G +E +
Sbjct: 324 LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT 378
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 41/301 (13%), Positives = 74/301 (24%), Gaps = 89/301 (29%)
Query: 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447
++ W G + E D I+ + ++ + + + S GRY C+A + G
Sbjct: 31 EITWKRAVDGFTFTEGDKSLDGRIE---VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87
Query: 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA 507
+ + L I+ P+
Sbjct: 88 GHQK------------------------------------------SMYLDIEYAPK--- 102
Query: 508 IKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI--DEETST 565
SN + + P I W ++ + +
Sbjct: 103 ---FISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 566 IAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG------------------------- 600
+ I D Y TATN G+ + L +
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 601 ----------YIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
Y + +E S + V + + NL + Y +V A N G G
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIWKIVRS-HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Query: 651 P 651
Sbjct: 279 D 279
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 3e-20
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
S++ + + + A + IG + Y+ ++ P +
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIGG---HQKSMYLDIEYA-----PKFISNQTIYYSW 113
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-----ITYENNVARFTVVNCSESSEGRY 212
+ + + C V P I W +D ++ +N + S++ GRY
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 213 TCKATNEAGTAETSCTLLVQGK 234
C ATN GT L +
Sbjct: 174 NCTATNHIGTRFQEYILALADV 195
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 5e-17
Identities = 43/246 (17%), Positives = 67/246 (27%), Gaps = 71/246 (28%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P PEI+W + T ++ V + +
Sbjct: 21 VCDAEGEPIPEITWKRAVDGFT-----------------FTEGDKSLDGRIEVKGQHGSS 63
Query: 589 STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
S L V D + A + +G
Sbjct: 64 S---------------------LHIKDVKLSD---------------SGRYDCEAASRIG 87
Query: 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708
G + + L AP FI E I + VK++P SI W R
Sbjct: 88 -GHQKSMYLDIEY----------APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 709 NNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+ L ++ + G +ILE+ D G Y ATN +G+ + +
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN-DFGRYNCTATNHIGTRFQEYILAL--- 192
Query: 767 KVGRPS 772
PS
Sbjct: 193 -ADVPS 197
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD---------DSLIKGR-NITYEN 194
P I + K+ VTL C G P P+I W + D + GR + ++
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK-EIKESARHIITARGTQRKL 253
+ + + S GRY C+A + G + S L ++ + + + G +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 56/430 (13%), Positives = 111/430 (25%), Gaps = 138/430 (32%)
Query: 311 KLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEI-------KESARHIITSRGTQRK 362
+L + T + G T + P ++ W + R + +
Sbjct: 6 QLKNETTYEN-GQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 363 LVIKRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG-------- 398
L IK V D + L+++ +S G
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 399 ---------WWFESKYKDDSLIKGRN-----ITYENNVARFTVVNCSESSEGRYTCKATN 444
W +D ++ +N + S++ GRY C ATN
Sbjct: 125 KSNPPASIHW-----RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
GT + L + P
Sbjct: 180 HIGTR------------------------------------------FQEYILALADVPS 197
Query: 505 QP-AIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEET 563
P +K+++ + + ++S + + G P + + E+ +
Sbjct: 198 SPYGVKIIELSQTTAKVS----FN-KPDSHG-GVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 564 STIAIYSVVRADTSTYTVTATNAAG-----------------------------STSLDL 594
+ + + ++ T V A N G S L
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL 311
Query: 595 SL--------QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646
S+ +L YI++ + K+ + + +E+L+ Y Q+ A N
Sbjct: 312 SITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANR 371
Query: 647 VGLGPEATTE 656
+G E
Sbjct: 372 LGYSEPTVYE 381
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-------FDG 725
P I+ + +T E G + L+ + P P I W R + + +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ L +K+ +D+G Y A + +G + +
Sbjct: 61 GSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLDI 97
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 35/261 (13%), Positives = 75/261 (28%), Gaps = 22/261 (8%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSV 60
+ S++L I + D G Y ++ +G + + + AP + +
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 61 TLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
+ + P + VL + K+ + E+ + +
Sbjct: 119 NISCDV---KSNPPASIHWRRDKLVLPA--KNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
A N IGT + P I E + + V+ S P
Sbjct: 174 NCTATNHIGT--RFQEYILALADVPSSPYGVKIIELSQTTA-----KVSFNKPDSHGGVP 226
Query: 175 DIKW---YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ K+ + + + + N ++ A N G + S +
Sbjct: 227 IHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF 286
Query: 232 QGKEIKESARHIITARGTQRK 252
Q ++E + I + + K
Sbjct: 287 QTLPVREPSPPSIHGQPSSGK 307
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 49/366 (13%), Positives = 99/366 (27%), Gaps = 97/366 (26%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461
KD + + + N + T + G Y+C T+ G A + +
Sbjct: 37 SKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI------- 89
Query: 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521
K P P + + +
Sbjct: 90 ------------------------DEEELKRLLALSHEHKFPTVPVKSELAVEILEKG-Q 124
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS--TIAIYSVVRADTSTY 579
V+ + E +++++ N EI + ++ ID T + + + D TY
Sbjct: 125 VRFWMQAEK---LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 580 TVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
T + + + L + Q+E + +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWI----------------------- 218
Query: 640 QVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 699
Q P F+E + V + + L KV
Sbjct: 219 -----------------------------RKQGPHFVE-YLSWEVTGECNVLLKCKVANI 248
Query: 700 PAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758
IVW+++ + + K F L + E + DAG Y+V+ ++ G
Sbjct: 249 KKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSR 305
Query: 759 ARVTVD 764
++ +
Sbjct: 306 LKLVDE 311
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 7e-26
Identities = 42/338 (12%), Positives = 83/338 (24%), Gaps = 79/338 (23%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367
F ++ + F+ + +P + W K ++S R + S+G + K+ K
Sbjct: 5 FTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKD 64
Query: 368 VTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESK----------------------- 404
+ DD + ++ +D
Sbjct: 65 LGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ 124
Query: 405 ------------------YKDDSLIK---GRNITYENNVARFTVV--NCSESSEGRYTCK 441
++ I + + N + + EG YT +
Sbjct: 125 VRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 184
Query: 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501
+ T + VL K Q
Sbjct: 185 LQDGKATNHSTV--------------------------VLVGDVFKKLQKEAEFQRQEWI 218
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFID 560
Q P S ++ + ++ K + I W K+ EI+ + +
Sbjct: 219 RKQGPHF----VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFK 272
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ T+ I + D Y V + G L L
Sbjct: 273 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 39/262 (14%), Positives = 80/262 (30%), Gaps = 33/262 (12%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKV--------TLLSAPGAPDTPEIV 53
+ + +T DLG Y+ +++ G AS+ L P P
Sbjct: 54 KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS 113
Query: 54 GRSDS-----SVTLHWRPPQDDGHSPVT----GYVLESHDKDEFMVWNKIETTSTTYEVT 104
+ V + + G++ V + K + + T +
Sbjct: 114 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI--DRNTGIIEMFME 171
Query: 105 KLTTKHEYMFRVAAVNAIGTG-----------PASHNTRYVVVKAPVDAEAPVIQEPLKD 153
KL + E + + T + + + P E L
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 154 SVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGR 211
V + +V L+C V+ + I WYKD+ I +++ + + S+ G
Sbjct: 232 EVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGI 290
Query: 212 YTCKATNEAGTAETSCTLLVQG 233
Y ++ G ++ L+ +
Sbjct: 291 YEVILKDDRGKDKSRLKLVDEA 312
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 42/324 (12%), Positives = 96/324 (29%), Gaps = 34/324 (10%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVAR 198
P +E + + S+ EC P + W KD + + + N +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRV 258
T + G Y+C T+ G A + + K + + + + +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 259 TQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTL- 317
+ + + A + +K+ ++ ++ + ++T +E + +
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYI-FNEKEIFEGPKYKMHIDRNTGIIEMF--MEKLQDE 176
Query: 318 ---------VPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368
V L K L+K E + L + V
Sbjct: 177 DEGTYTFQLQDGKATNHSTVVL--VGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-V 233
Query: 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIK-GRNITYENNVARFTV 427
T + + N+K + + W YKD+ I +++ + +
Sbjct: 234 TGECNVLLKCKVANIKKETHIVW-------------YKDEREISVDEKHDFKDGICTLLI 280
Query: 428 VNCSESSEGRYTCKATNEAGTAET 451
S+ G Y ++ G ++
Sbjct: 281 TEFSKKDAGIYEVILKDDRGKDKS 304
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 6e-18
Identities = 28/274 (10%), Positives = 66/274 (24%), Gaps = 70/274 (25%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPV------IQEPLKDSVAGFQSSVTLEC 166
++ + G +S+ +K + ++ L +
Sbjct: 72 IYSCDVTDTDGI-ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130
Query: 167 VVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVV--NCSESSEGRYTCKATNEAG 221
+ + ++ I + + N + + EG YT + +
Sbjct: 131 AEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA 190
Query: 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281
T T+++ G K+
Sbjct: 191 TNH--STVVLVGDVFKK------------------------------------------- 205
Query: 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS--SPDIQVKW 339
L+ A F E F+ L + + +++ + + W
Sbjct: 206 -------LQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE--CNVLLKCKVANIKKETHIVW 256
Query: 340 LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
K +EI +H L+I ++ D
Sbjct: 257 YKDEREISVDEKHDFK--DGICTLLITEFSKKDA 288
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 9e-13
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 2/104 (1%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G P E ++ +P W ++ SP+ G
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ K+ + D G Y T+ G A+ +++++ S
Sbjct: 60 MTFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-32
Identities = 38/233 (16%), Positives = 66/233 (28%), Gaps = 52/233 (22%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+++W NG+ I S + + E + I D Y + +
Sbjct: 29 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+ L Y E LK +A
Sbjct: 89 VDLSGQAYDEAYAEFQRLKQAAIA------------------------------------ 112
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+A + + T++E + L V P P + W +N K L
Sbjct: 113 --------------EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 158
Query: 714 LSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ F+ G + + D+G Y +V N+ GS T V+V +
Sbjct: 159 AQTDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVSVFI 210
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 3e-22
Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 31/199 (15%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461
+ S I+ + + + + +G+Y + + + LS
Sbjct: 38 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD-----LS 92
Query: 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521
+ + +K + P +
Sbjct: 93 GQAYDEAYAEFQRLKQAAIAEKNRARV----------LGGLPD------------VVTIQ 130
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYT 580
+ +G P PE+SW+KN + + C + + T+ I V AD+ Y
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG 190
Query: 581 VTATNAAGSTSLDLSLQVL 599
+ N GS + D ++ V
Sbjct: 191 LVVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-20
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAE---APVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
V+ G + +K AE A V+ ++ L C V G P
Sbjct: 87 KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP 146
Query: 174 PDIKWYKDDSLIK---GRNITYE-NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
P++ W K++ + N+ +E A FT+ S + G+Y N+ G+ + T+
Sbjct: 147 PEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
Query: 230 LVQGKE 235
V E
Sbjct: 207 SVFIPE 212
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 6e-16
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 149 EPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGRN---ITYENNVARFTVVNC 204
LK + L V+ V + W + S I+ + +
Sbjct: 9 TDLKIQSTA--EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 66
Query: 205 SESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ + +G+Y + + + + L Q +
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYD 97
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-12
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 689 TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747
I+L + V + W N + S + + GE I L++ E + D G Y +
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVME 77
Query: 748 ATNELGSATHGARVTVDVEKVGRPSINSID 777
+ ++ +
Sbjct: 78 LFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 6e-08
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 327 QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
V D++V W G I+ S R G Q L I T +D+
Sbjct: 25 FVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 71
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 6e-32
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 8/147 (5%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ L + + D G+Y + N +GQ S + P +P + V S+
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ-VEPYSSTAQ 130
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFM---VWNKIETTS--TTYEVTKLTTKHEYMFRV 116
+ + P+ G P+ Y E E + W + S + L + Y R+
Sbjct: 131 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 190
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAE 143
AA+N G G S + PV E
Sbjct: 191 AALNGKGLGEISAASE--FKTQPVQGE 215
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 4e-21
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 39/162 (24%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFI--DEETSTIAIYSVVRADTSTYTVTATNA 586
+ F +P ISW ++G + S I I S + + D Y TA N
Sbjct: 39 TCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNR 98
Query: 587 AGSTSLDLSLQV----------------------------------LGYIIQQQEKNSLK 612
G SL+ L L Y + +
Sbjct: 99 IGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV 158
Query: 613 FTKV---ATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ A T+ L+ ++ Y ++ A N GLG
Sbjct: 159 WHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGE 200
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 6e-18
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---- 189
+V AP +Q P + V + C V P+ I W++D L+ N
Sbjct: 9 ALVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNI 67
Query: 190 -ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
I + + V SE+ G Y C A N G L+
Sbjct: 68 KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 5e-15
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENI- 728
++ E + + +V A P+ +I WFR+ + L SS +I++ +
Sbjct: 17 MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
LE+ D G+Y A N +G + + + PSI+ ++
Sbjct: 77 YLEVTPDSEN-DFGNYNCTAVNRIGQESLEFILVQ-ADTPSSPSIDQVEP 124
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 5e-31
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 28 ALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE 87
+ G + A+ + ++ PG P +I +V L W PP+DDG++ +TGY ++ DK
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS 61
Query: 88 FMVWNKIETT--STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
M W + T+ +T+L +EY FRV + N G + T+ V A
Sbjct: 62 -MEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIAR 114
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-10
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP--EATT 655
+ GY IQ+ +K S+++ V T+ L +EYYF+VF+EN GL T
Sbjct: 49 ITGYTIQKADKKSMEWFTVIE-HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTK 107
Query: 656 ELVALATHATL 666
E +A +
Sbjct: 108 ESAVIARDGKI 118
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-30
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P + +D++VT+ WRPP G + + GYVLE ++++V NK T
Sbjct: 6 SGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKT 65
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+ +T L T + RV AVNA G + ++ ++VK +
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPS 108
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 8/54 (14%), Positives = 23/54 (42%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ GY+++ + + + ++T+ L ++ + +V A N+ G
Sbjct: 39 LDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASE 92
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-29
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTT 100
AP + +D++ TL WRPP G + GY++E +E++ NK
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+ V L T +FRV VN G + + V ++ +
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPS 109
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 6e-11
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ GY+++ + S ++ +TV++L + F+V N G
Sbjct: 40 IDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSE 93
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-29
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 31 QASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV 90
S+ L PG P P++ + +SVTL W+P G P + Y++E+ +
Sbjct: 3 SGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNS 61
Query: 91 WNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
W + +T Y V L Y+F V A+N G S + V +
Sbjct: 62 WQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-09
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
YII+ ++ + T YTV LR + Y F V A N GL
Sbjct: 46 ASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSD 99
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-29
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + + LS P APD P I S++SV + W P +G P+ + +E +
Sbjct: 4 GSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVG 62
Query: 90 VW----NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
W + I + + E+T L Y FRV A+N +G S +R VV +
Sbjct: 63 DWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSSG 121
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVAT--LDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ + ++ ++ + +AT + PS L + L Y F+V A N +G
Sbjct: 48 IQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESE 103
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 6e-29
Identities = 57/516 (11%), Positives = 129/516 (25%), Gaps = 160/516 (31%)
Query: 123 GTGPASHNTRYVVVKAPVDA------EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI 176
+ ++ +V ++P D ++ +S+TL+ +V
Sbjct: 21 DSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISC 80
Query: 177 KWYKDDSLIKGRNI--TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
W S + + V ++ +E+ G Y +EA T+ ++
Sbjct: 81 LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Query: 235 EIKESARHIITARGTQRKLVI----------------KRVTQDDETDIGVLALNVKSVSK 278
+ R Q LV + E V+ K + +
Sbjct: 141 LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200
Query: 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS------- 331
L +D+ A ++L ++ L Q+ L
Sbjct: 201 LF-----GTDIRCCA--------RNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 332 -------SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384
+ + W + K ++E +++ T R T I +L V
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR------------TMIRILFAFVS 295
Query: 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444
SV++ +D+ G YTC ++
Sbjct: 296 SVAR------------------NDT--------------------------GYYTCSSSK 311
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
++ + I
Sbjct: 312 HPS---------------------------------------------QSALVTIVEKGF 326
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
I +S+ + + ++ V++ +P+ +W + +
Sbjct: 327 ---INATNSS-EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE----QKGLDNGY 378
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+I+ + + Y A N + +L +
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 94.4 bits (234), Expect = 1e-20
Identities = 33/318 (10%), Positives = 84/318 (26%), Gaps = 63/318 (19%)
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
L+ QS + + V + ++V W+ + +
Sbjct: 42 CALRPQSSG-------TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQE----- 607
+ + ++ I + Y + + A + ++ ++ + ++
Sbjct: 95 FDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKM 153
Query: 608 KNSLKFTKVATLDP---------------------STLQYTVENLRDKSEYYFQVFAENS 646
+N ++ P + ++ + L + + A N
Sbjct: 154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213
Query: 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK-VKASPAPSIV 705
+G T L + + +K + + K V + +
Sbjct: 214 LG---RECTRLFTID---------LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261
Query: 706 WFRNNKPLLSSPKKR------EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759
W NK L + + + D G Y ++ + A
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV-ARNDTGYYTCSSSKHPSQS---A 317
Query: 760 RVTVDVEKVGRPSINSID 777
VT+ V + IN+ +
Sbjct: 318 LVTI----VEKGFINATN 331
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 7e-20
Identities = 47/393 (11%), Positives = 104/393 (26%), Gaps = 90/393 (22%)
Query: 399 WWFESKYKDDSLIKGRNITYENN-VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
W F+ SL + +N V ++ +E+ G Y +EA
Sbjct: 82 WVFK----HSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-------- 129
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
T + I++ L +
Sbjct: 130 ----------------------------------TILFTVSIRNTLL---YTLRRPYFRK 152
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+++Q + P P + W+ ++ K + ++ + + +
Sbjct: 153 ----MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV----LHELFGT 204
Query: 578 TYTVTATNAAG-STSLDLSLQVLGYIIQQQEKNSLKFTKVATLD--------PSTLQYTV 628
A N G + ++ + + LK + + L + +
Sbjct: 205 DIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL 264
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG--------SPGQA-------P 673
EN + YF++ ++ V+ G P Q+
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEK 324
Query: 674 LFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
FI + + + KA P W + K ++ + +G +I
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE--QKGLDNGYSISK 382
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + G+Y A N+ T + +
Sbjct: 383 ---FCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 1e-19
Identities = 23/228 (10%), Positives = 49/228 (21%), Gaps = 24/228 (10%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
D N LG+ L+ P++ + + + + +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAV--HVNHGFG 259
Query: 77 ------GYVLESHDKDEFMVW--NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
LE + E + N+ V+ + + ++
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---- 315
Query: 129 HNTRYVVVKAPVDAEAPVIQ--EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK 186
+ V + I +D P W
Sbjct: 316 --SALVTIVEK-----GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP 368
Query: 187 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+N + + G Y A N+ TL ++
Sbjct: 369 CEQKGLDNG-YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 2e-19
Identities = 25/244 (10%), Positives = 64/244 (26%), Gaps = 27/244 (11%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++ I+K + G+Y + + + + V++ + + ++
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVN 120
L + + + E +V + R A N
Sbjct: 158 ALVCIS---ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDI--RCCARN 212
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWY 179
+G + + Q L + + C V + W
Sbjct: 213 ELGR--ECTRLFTIDL-------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWE 263
Query: 180 KDDSLIK-GRNITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAETSCTLL 230
++ ++ G T++ + + + G YTC ++ S +
Sbjct: 264 LENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVT 320
Query: 231 VQGK 234
+ K
Sbjct: 321 IVEK 324
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 4e-16
Identities = 30/303 (9%), Positives = 65/303 (21%), Gaps = 81/303 (26%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
+ + V ++ + ++ L C+ VP P ++
Sbjct: 122 IQSEATN--YTILFT-VSIRNT-----LLYTLRRPYFRKM-ENQDALVCISESVPEPIVE 172
Query: 178 WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ----- 232
W DS + V + V E C A NE G T +
Sbjct: 173 WVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARNELGRECTRLFTIDLNQTPQ 231
Query: 233 ----------------------------------GKEIKESARHIITARGTQR------K 252
K ++E ++ T R
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 253 LVIKRVTQDDETDIGVLALN-VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK 311
+ V ++D + + + + + + +
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQSALVTIVEK-------------------GFINATNS 332
Query: 312 LPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ 370
+ + + F V P I+ W K + + + +
Sbjct: 333 SEDYEIDQY-EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNG----YSISKFCNHK 387
Query: 371 DDE 373
Sbjct: 388 HQP 390
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 2e-13
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Query: 643 AENSVGLGPEATTELVA--LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 700
N +G ++ +V+ P Q+ + V +I L V A
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGCALRP-QSSGTVYEAAAVEVDVSASITLQVLVDAPG 76
Query: 701 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760
S +W + L P G + + + + +ET AG+Y + +E + T
Sbjct: 77 NISCLWVFKHSSLNCQPHFDLQNRG-VVSMVILKM-TETQAGEYLLFIQSEATNYTILFT 134
Query: 761 VTV 763
V++
Sbjct: 135 VSI 137
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 2e-12
Identities = 43/344 (12%), Positives = 85/344 (24%), Gaps = 94/344 (27%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+ + +V V T QV + +I W+ K + + +RG +VI
Sbjct: 50 GTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV-VSMVI 107
Query: 366 KRVTQDDE------------TDIGVLALNVKSVSKLKW-------------LDFGSGGW- 399
++T+ + +++++ L S
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP 167
Query: 400 -----WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
W DS + V + V E C A NE G TR
Sbjct: 168 EPIVEW----VLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARNELGRECTRL- 221
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
L L++ P
Sbjct: 222 -------------------------FTIDLNQTPQTTLPQLFLKVGEP------------ 244
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIA------I 568
+ + ++W + + + T+ +
Sbjct: 245 ---------LWIRCKAV-HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFV 294
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLK 612
SV R DT YT +++ ++L +++ G+I +
Sbjct: 295 SSVARNDTGYYTCSSSKHPSQSAL-VTIVEKGFINATNSSEDYE 337
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 9e-29
Identities = 67/566 (11%), Positives = 140/566 (24%), Gaps = 146/566 (25%)
Query: 123 GTGPASHNTRYVVVKAPVDA------EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI 176
+ ++ +V ++P D ++ +S+TL+ +V
Sbjct: 21 DSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISC 80
Query: 177 KWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
W S + V ++ +E+ G Y +EA T+ ++
Sbjct: 81 LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
Query: 235 EIKESARHIITARGTQRKLVIKRVT----------------QDDETDIGVLALNVKSVSK 278
+ R Q LV + E V+ K + +
Sbjct: 141 LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200
Query: 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHL---GDATF---QVELSS 332
L +D+ A + L++ P TL G+ + + +
Sbjct: 201 LF-----GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVN 255
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQR------KLVIKRVTQDDE------------- 373
+ W + K ++E +++ T R + V ++D
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Query: 374 -TDIGVLAL-NVKSVSKLKWLDFGSGG----------------WWFESKYKDDSLIKGRN 415
+ ++ + + + + + W
Sbjct: 316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW----TFSRKSFPCEQ 371
Query: 416 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKP 475
+N + + G Y A N+
Sbjct: 372 KGLDNGY-SISKFCNHKHQPGEYIFHAENDDAQFT------------------------- 405
Query: 476 PMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF 535
+ L I+ PQ V + + + S S G+
Sbjct: 406 -----------------KMFTLNIRRKPQ------VLAEASASQASCFSD--------GY 434
Query: 536 PRPEISWMKNG-----------AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
P P +W K + + KA R + S+ + A
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 585 NAAGSTSLDLSLQVLGY--IIQQQEK 608
N+ G++ + L G IQ
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGT 520
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 89.4 bits (221), Expect = 1e-18
Identities = 36/415 (8%), Positives = 89/415 (21%), Gaps = 125/415 (30%)
Query: 405 YKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
S + V ++ +E+ G Y +EA
Sbjct: 83 VFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY------------- 129
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
T + I++ + + +
Sbjct: 130 -----------------------------TILFTVSIRNTLLY-------TLRRPYFRKM 153
Query: 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
++Q + P P + W+ ++ K + + +
Sbjct: 154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV----VKKEEKVLHELFGTDIRCC 209
Query: 583 ATNAAG-STSLDLSLQVLGYIIQQQEKNSLKFTKVATL---------------------- 619
A N G + ++ + + LK + +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKAL 269
Query: 620 ------------------DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661
V ++ Y+ + + +
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFA--FVSSVARNDTGYYTCSSSKHPS----QSALVTI-- 321
Query: 662 THATLGSPGQAPLFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK 718
FI + + + KA P W + K +
Sbjct: 322 ---------VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF--PCE 370
Query: 719 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
++ + +G +I + + G+Y A N+ T + + +P +
Sbjct: 371 QKGLDNGYSISKFC---NHKHQPGEYIFHAENDDAQFTKMFTLNIRR----KPQV 418
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 2e-18
Identities = 61/534 (11%), Positives = 124/534 (23%), Gaps = 152/534 (28%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+ + +V + T QV + +I W+ K + + +RG +VI
Sbjct: 50 GTVYEAAAVEVDVS-ASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV-SMVI 107
Query: 366 KRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGGWWFESK----- 404
++T+ + +++++ + +
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP 167
Query: 405 ------YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
DS + V + E C A NE G
Sbjct: 168 EPIVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFGTDIRCCARNELGRE--------- 217
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
TR + + PQ L
Sbjct: 218 --------------------------------CTRLFTIDLNQTPQTT--------LPQL 237
Query: 519 RLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRI------FIDEETSTIAIYSV 571
L V + K ++W + + + + SV
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNS--------------------- 610
R DT YT +++ ++L +++ G+I
Sbjct: 298 ARNDTGYYTCSSSKHPSQSAL-VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356
Query: 611 ----------LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660
+ + ++ + EY F AEN L
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH--AENDDA-QFTKMFTL--- 410
Query: 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK- 719
+ P + E + P PS W + + + ++
Sbjct: 411 ----NIRRK---PQV--------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI 455
Query: 720 ----------REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
R++F L +++ K A N LG++ +
Sbjct: 456 TEGVWNRKANRKVFGQWVSSSTLNMSEAI-KGFLVKCCAYNSLGTSCETILLNS 508
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 4e-18
Identities = 24/228 (10%), Positives = 50/228 (21%), Gaps = 24/228 (10%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
D N LG+ L+ P++ + + + + +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAV--HVNHGFG 259
Query: 77 ------GYVLESHDKDEFMVW--NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
LE + E + N+ V+ + + ++
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---- 315
Query: 129 HNTRYVVVKAPVDAEAPVIQ--EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK 186
+ V + I +D P W
Sbjct: 316 --SALVTIVEK-----GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP 368
Query: 187 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+N + + G Y A N+ TL ++ K
Sbjct: 369 CEQKGLDNGY-SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK 415
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 5e-17
Identities = 30/324 (9%), Positives = 80/324 (24%), Gaps = 62/324 (19%)
Query: 492 TRTTNLQIQSPPQQPAIKL------VDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN 545
++ + P+ L + + V + ++V W+
Sbjct: 26 KSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFK 85
Query: 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YII 603
+ + + + ++ I + Y + + A + ++ ++ +
Sbjct: 86 HSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYT 144
Query: 604 QQQE--------------------------KNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
++ + P+ ++ + L +
Sbjct: 145 LRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGT 204
Query: 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK 697
+ A N +G T L + + + +K + + K
Sbjct: 205 DIRCCARNELG---RECTRLFTIDLN---------QTPQTTLPQLFLKVGEPLWIRCKAV 252
Query: 698 -ASPAPSIVWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGDYKVVATN 750
+ + W NK L + + D G Y ++
Sbjct: 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSK 311
Query: 751 ELGSATHGARVTVDVEKVGRPSIN 774
+ A VT+ V + IN
Sbjct: 312 HPSQS---ALVTI----VEKGFIN 328
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 3e-16
Identities = 27/243 (11%), Positives = 64/243 (26%), Gaps = 27/243 (11%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ I+K + G+Y + + + + V++ + + ++
Sbjct: 99 NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA 158
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNA 121
L + V + + E L R A N
Sbjct: 159 L---VCISESVPEPI--VEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYK 180
+G + + P P G + + C V + W
Sbjct: 214 LGR--ECTRLFTIDLNQT-----PQTTLPQLFLKVG--EPLWIRCKAVHVNHGFGLTWEL 264
Query: 181 DDSLIKGRNITYEN---------NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
++ ++ N + + V + + + G YTC ++ S + +
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTI 321
Query: 232 QGK 234
K
Sbjct: 322 VEK 324
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 2e-13
Identities = 34/248 (13%), Positives = 54/248 (21%), Gaps = 41/248 (16%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE---IVGRSDSS 59
+ D G YT S S S + VT++ T
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSK---HPSQSALVTIVEKGFINATNSSEDYEIDQYEE 343
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAV 119
R + + + + F K + + A
Sbjct: 344 FCFSVRF---KAYPQIR--CTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
N + + ++ P + S+ C G P P W
Sbjct: 399 NDDAQ--FTKMF-TLNIRRK-----PQVLA------EA--SASQASCFSDGYPLPSWTWK 442
Query: 180 K-------DDSLIKGRNITYENNVARF-------TVVNCSESSEGRYTCKATNEAGTAET 225
K I + N F T+ C A N GT+
Sbjct: 443 KCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCE 502
Query: 226 SCTLLVQG 233
+ L G
Sbjct: 503 TILLNSPG 510
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 9e-11
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 643 AENSVGLGPEATTELVA-LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 701
N +G ++ +V+ Q+ + V +I L V A
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 702 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
S +W + L P + + + + + + +ET AG+Y + +E + T V
Sbjct: 78 ISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKM-TETQAGEYLLFIQSEATNYTILFTV 135
Query: 762 TV 763
++
Sbjct: 136 SI 137
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENII 729
+ L K + L+ ++ P P + W + S ++ + E +
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLN 781
L E D + A NELG T+D+ P + L
Sbjct: 198 L------HELFGTDIRCCARNELGRECTRL-FTIDLN--QTPQTTLPQLFLK 240
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-29
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
G + T PG P P + G+ S + W PP+D+G + + YV+E +
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 89 MVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
W I + + + +L Y RV ++ G S ++V+ P +
Sbjct: 64 NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTPAVSGPS 118
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 598 VLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP----- 651
+ Y+++ E ++ K+ + +T ++ + L Y +V+ + G
Sbjct: 50 INKYVVEMAEGSNGNKWEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 107
Query: 652 EATTELVA 659
T V+
Sbjct: 108 LVQTPAVS 115
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 9e-29
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 47/171 (27%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-----GRNITYEN 194
+ +AP +PL+ V S+ T E +SG P P++ W++D +I G I++ +
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ---------------------- 232
A+ T+ ++++ GRY+ KATN +G A ++ LLV+
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 233 --------------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
G EI+ S I+ G L+I +D
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 53/249 (21%), Positives = 84/249 (33%), Gaps = 67/249 (26%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L+S + S E GFP PE+SW ++G
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQV-------------------------- 45
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ S I + L V +
Sbjct: 46 -----------------ISTSTLPGVQISFSDGRAKLTIPAV-------------TKANS 75
Query: 635 SEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMA 694
Y + A N G +T EL + + P F++R + TV++ +RL
Sbjct: 76 GRY--SLKATNGSG-QATSTAEL-------LVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 695 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
+V P P + ++R+ + SS + +G+ L + EA E D+G Y V ATN +G
Sbjct: 126 RVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGR 184
Query: 755 ATHGARVTV 763
AT A + V
Sbjct: 185 ATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-25
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
+ + A N G A+ +V P + L+ S V L+ V+G+P
Sbjct: 77 RYSLKATNGSGQ--ATSTAELLVKAETA---PPNFVQRLQSMTVRQGSQVRLQVRVTGIP 131
Query: 173 TPDIKWYKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
TP +K+Y+D + I+ I+ E ++ + G Y+ ATN G A ++ L
Sbjct: 132 TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Query: 230 LVQ 232
LVQ
Sbjct: 192 LVQ 194
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 6e-22
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 50/199 (25%)
Query: 405 YKDDSLIK-----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
++D +I G I++ + A+ T+ ++++ GRY+ KATN +G A +
Sbjct: 40 FRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATS-------- 91
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T L +++ P L+S
Sbjct: 92 ----------------------------------TAELLVKAETAPPNFV---QRLQSMT 114
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579
+ SQ +++V+ G P P + + ++GAEI S +I + + ++ I D+ TY
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Query: 580 TVTATNAAGSTSLDLSLQV 598
+V ATN+ G + L V
Sbjct: 175 SVNATNSVGRATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 1e-18
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 728
QAP F + + V E T A + P P + WFR+ + + +S P + F
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
L + ++ ++G Y + ATN G AT A + V + P+
Sbjct: 64 KLTIPAV-TKANSGRYSLKATNGSGQATSTAELLV-KAETAPPNF 106
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-10
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 48/188 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH--IITSRGTQRKL 363
F L SV ++ ATF+ +S P +V W + G+ I S I+ + KL
Sbjct: 7 TFTQPLQSVVVLEG-STATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 364 VIKRVTQDDETDIGVLA------------LNVKS-------VSKLKWLDFGSGG------ 398
I VT+ + + A L VK+ V +L+ + G
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 399 -----------WWFESKYKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATN 444
+ Y+D + I+ I+ E ++ + G Y+ ATN
Sbjct: 126 RVTGIPTPVVKF-----YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 445 EAGTAETR 452
G A +
Sbjct: 181 SVGRATST 188
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 138 APVD-AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYE 193
P AP I ++ + V PT ++KWY + ++ + + T
Sbjct: 1 GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ V +++C G Y TN G A TL V G +
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-22
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
+ AP R V R + V++ P + W+ N L S K
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
+ LE+ + ++ D+G Y+ V TN G A+ A + V
Sbjct: 64 LTLEILDCHTD-DSGTYRAVCTNYKGEASDYATLDVT 99
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-16
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 497 LQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR 556
+ P+ + ++S R+ + + P E+ W NG E+ +S
Sbjct: 3 FTLDHAPR------ITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIH 56
Query: 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601
T+ I D+ TY TN G S +L V G
Sbjct: 57 YTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-09
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ S + + F + + P +VKW G E++ES++ T+ L I
Sbjct: 10 RITLRMRSHRVPCG-QNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEI 68
Query: 366 KRVTQDDE 373
DD
Sbjct: 69 LDCHTDDS 76
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
Y + ++ + + T + V +++C G Y TN G A
Sbjct: 43 YHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDY 93
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-28
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-GRNI 190
R + V V AP I L++ S+ + C SG P P I W+KD+ + I
Sbjct: 1 RQLTVLERV---APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 57
Query: 191 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
++ T+ + EG YTC+A + G A+ +++G + K +
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 6e-19
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP E +T +I + +P P I+WF++N+ L+ + N L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
++ E D G Y A + LG A A ++
Sbjct: 68 IRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIEG 100
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-13
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 493 RTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS 552
R + + P + NL++Q S+ +V G P P+I W K+ + +
Sbjct: 1 RQLTVLERVAPT------ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED 54
Query: 553 KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
I + + + I V + D YT A + G ++ + G
Sbjct: 55 S--GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 405 YKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+KD+ + I ++ T+ + EG YTC+A + G A+
Sbjct: 45 FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV 92
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-28
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + A TL P P+ P I R+ +S+TL W+ P D S + +VLE +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNG 62
Query: 90 VW-NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
+ + +++TKL+ FR++A N GT S Y
Sbjct: 63 EFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-07
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ ++++ E S Q+ + L F++ A N G
Sbjct: 48 IQNFVLEWDEGKG-NGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-28
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTY 101
P P + + +VTL W P+ G +T Y++E ++ N +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 102 EVTKLTTKHEYMFRVAAVNAIGT-GPASHNTRYVVVKAPVDA 142
V+ LT Y FRV A NA G P S + + + V+A
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-10
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG--PEATT 655
+ YI+++++ + ++ K + ++TV L + + Y F+V A+N+ G P +
Sbjct: 42 ITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPS 101
Query: 656 ELV 658
+ +
Sbjct: 102 DAI 104
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-28
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYENNVAR 198
EAP I E ++ G S V G P P+ +WYK+ I+ E+NV
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + + KA N AG + LLVQ K
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-23
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 729
+AP ER + +TV + +V P P W++N + S + + +N+
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L +++ E D+ V A N G + A + V
Sbjct: 64 LVIRDVTGE-DSASIMVKAINIAGETSSHAFLLV 96
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-14
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVR 573
++SQ + S V+ G P PE W KNG +I S + E+ + I V
Sbjct: 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQV 598
D+++ V A N AG TS L V
Sbjct: 72 EDSASIMVKAINIAGETSSHAFLLV 96
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 304 PAVE---FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRG 358
P++E ++ S T V DA F+V + PD + +W K G +I+ S R
Sbjct: 1 PSMEAPKIFERIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED 59
Query: 359 TQRKLVIKRVTQDDE 373
+LVI+ VT +D
Sbjct: 60 NVCELVIRDVTGEDS 74
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-07
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
YK+ I+ E+NV + + + KA N AG +
Sbjct: 40 YKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 93
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 7e-28
Identities = 54/308 (17%), Positives = 96/308 (31%), Gaps = 66/308 (21%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI-F 558
+ PP+ K Q + G P+P ++W K G ++ + I F
Sbjct: 4 EEPPR------FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEF 57
Query: 559 IDEETSTIAIYSV-VRADTSTYTVTATNAAGSTSLDLSLQVLG---------YIIQQQE- 607
+ + + I + D + Y A N+ G ++ L VL I +
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 608 --------------------------KN------SLKFTKVATLDPSTLQYTVENLRDKS 635
K+ S ++ L LQ D+
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695
+Y + A NS G + + + AP F + G + +
Sbjct: 178 KY--ECVATNSAG-------VRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCV 228
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755
SP P + W + + L ++ G N++ E D+ +Y VA + LG
Sbjct: 229 AVGSPMPYVKWMQGAEDLTPE---DDMPVGRNVL----ELTDVKDSANYTCVAMSSLGVI 281
Query: 756 THGARVTV 763
A++TV
Sbjct: 282 EAVAQITV 289
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 47/257 (18%)
Query: 2 EEDSATLTIVK-FEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDT-PEIVGRSDSS 59
E A L I +D Y N++G+ + K+T+L P P I
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNID------ 112
Query: 60 VTLHWRPPQD----DGHS-----PVTGY------------VLESHDKDEFMVWNKIETTS 98
PQ + +G ++ + + + S
Sbjct: 113 -----MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRI----KQLRS 163
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
++ + + A N+ G +S YV V+ AP
Sbjct: 164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN----VAPRFSILPMSHEIMP 219
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+V + CV G P P +KW + + ++ NV + YTC A
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNV----LELTDVKDSANYTCVAM 275
Query: 218 NEAGTAETSCTLLVQGK 234
+ G E + V+
Sbjct: 276 SSLGVIEAVAQITVKSL 292
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 1e-19
Identities = 42/286 (14%), Positives = 74/286 (25%), Gaps = 78/286 (27%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENNVARF 199
E P + KD + + C +G P P + W K + + I ++ +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 200 TVVN--CSESSEGRYTCKATNEAGTAETSCTLLVQ------------------------- 232
+ + E Y C A N G L V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 233 ---------------------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV--- 268
+ SA + + L I+ + D+ G
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQ---GKYEC 181
Query: 269 LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQV 328
+A N V R++S P F S ++P G+
Sbjct: 182 VATNSAGV-------RYSSPANLYVR----VQNVAP--RFSILPMSHEIMPG-GNVNITC 227
Query: 329 ELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
SP VKW++ +++ + V++ D
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPVGR------NVLELTDVKDS 267
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 4e-18
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENII 729
+ P FI+ +++ G + + P P + W + K + S + F + +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLAQS 789
L ++ + D Y+ VA N +G T A++TV E +ID+ Q
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP-------QL 117
Query: 790 TEVDVTST 797
V+ T T
Sbjct: 118 KVVERTRT 125
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 628 VENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
+ RD++ Y + A+NSVG E T L P P + K V+
Sbjct: 70 LRTPRDENVY--ECVAQNSVG---EITVH-AKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747
T ++ +P P I WF++ P+ S I + L+++ + ETD G Y+ V
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS-EETDQGKYECV 182
Query: 748 ATNELGSA-THGARVTVDVEKVGRPSI 773
ATN G + A + V V+ V P
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNV-APRF 208
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 52/345 (15%), Positives = 91/345 (26%), Gaps = 98/345 (28%)
Query: 308 FLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGTQRK-LVI 365
F+ + V G A+F + P +V W KKGK++ I + L I
Sbjct: 9 FIKEPKDQIGVSG-GVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 366 KRV-TQDDE-----------------TDIGVLALNVKSVSKLKWL--------DFGS--- 396
+ + T DE + VL + +
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 397 -----GG-------WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444
G W+ + D S GR + + + E+ +G+Y C ATN
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--LQIESSEETDQGKYECVATN 185
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
AG + L + V + P + P
Sbjct: 186 SAGVRYSSP----ANLYVRV-------QNVAP---------------------RFSILPM 213
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
S + + G P P + WM+ ++T +
Sbjct: 214 ------------SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------G 255
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQE 607
+ D++ YT A ++ G + V +
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHH 300
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-27
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYEN 194
P+ + PVI L+D+ S +G P P W KD I ++ +
Sbjct: 1 GPI-SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ S G YTC N AG+ +SC L ++
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 5e-21
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
P+ + ++ TV + K P P+ +W ++ K + K + D L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
E+ + D+ D+G Y N GS + ++T+
Sbjct: 65 EIHKTDTS-DSGLYTCTVKNSAGSVSSSCKLTI 96
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-14
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L+ +S S K VK G PRP W K+G IT ++ D+ + I+ +
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLG 600
D+ YT T N+AGS S L +
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTIKA 98
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ L T+ A F V+ + P W K GK I + ++ ++ L I
Sbjct: 8 VIVTGLQDTTVSSD-SVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 366 KRVTQDDE 373
+ D
Sbjct: 67 HKTDTSDS 74
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
KD I ++ + + S G YTC N AG+ +
Sbjct: 41 TKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 43/176 (24%), Positives = 62/176 (35%), Gaps = 47/176 (26%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYEN 194
+ EAP I++ +KD + L C + G P PDIKWY+ + ++ +
Sbjct: 1 GAMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ---------------------- 232
TV+ + EG YTC ATNE G ETS LL+Q
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGST 120
Query: 233 --------------------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV 268
K ++ S I LV+K V + +T G
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQR--KTHAGK 174
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-27
Identities = 45/245 (18%), Positives = 68/245 (27%), Gaps = 75/245 (30%)
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
Q ++ G P P+I W + G E+ S+ ++ D T
Sbjct: 26 QLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRTH-------------------- 63
Query: 585 NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644
+L D+ Y A
Sbjct: 64 -------------------------TLTVMTE-------------EQEDEGVY--TCIAT 83
Query: 645 NSVGLGPEATTELVALATHATLG--SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
N VG E T + L + Q E+ T+RL P P
Sbjct: 84 NEVG---EVET-------SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP 133
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
++ WF K L +S L +K +T AG YKV +N G+ V
Sbjct: 134 AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Query: 763 VDVEK 767
+ +K
Sbjct: 194 I-QDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 7e-23
Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 49/198 (24%)
Query: 405 YKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461
Y+ + ++ + TV+ + EG YTC ATNE G ET
Sbjct: 42 YRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET---------- 91
Query: 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521
++ L +Q+ PQ + +
Sbjct: 92 --------------------------------SSKLLLQATPQ---FHPGYPLKEKYYGA 116
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR-ADTSTYT 580
V S ++ V Y G P P ++W + +S+ I E + + + +V R Y
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 581 VTATNAAGSTSLDLSLQV 598
V +N G+ L +++
Sbjct: 177 VQLSNVFGTVDAILDVEI 194
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-22
Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
Y A N +G +++ ++++A + G S++ L + G
Sbjct: 77 VYTCI--ATNEVGE--VETSSK-LLLQATPQFHPGYPLKEKYYGAVG--STLRLHVMYIG 129
Query: 171 VPTPDIKWYKDDSLIK--GR-NITYENNVARFTVVNC-SESSEGRYTCKATNEAGTAETS 226
P P + W+ L++ I + + N ++ G+Y + +N GT +
Sbjct: 130 RPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI 189
Query: 227 CTLLVQGK 234
+ +Q K
Sbjct: 190 LDVEIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 7e-21
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G+AP + ++ T K +L ++ P P I W+R K L+ S K + DG
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
L + + E D G Y +ATNE+G +++ +
Sbjct: 65 LTVMTEEQE-DEGVYTCIATNEVGEVETSSKLLLQAT 100
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-13
Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 47/186 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ VT A ++ P +KW + GKE+ +S ++ ++S G L +
Sbjct: 9 GIRKEMKDVTTKLG-EAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 366 KRVTQDDETDIGVLA------------LNVKSVSKLKW-------LDFGSGG-------- 398
Q+DE +A L +++ + G
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY 127
Query: 399 ---------WWFESKYKDDSLIK--GR-NITYENNVARFTVVNC-SESSEGRYTCKATNE 445
W + L++ I + + N ++ G+Y + +N
Sbjct: 128 IGRPVPAMTW-----FHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 446 AGTAET 451
GT +
Sbjct: 183 FGTVDA 188
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-27
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW-NKIETT 97
+ S P P +P + + ++L W P Y+LE ++ + K +
Sbjct: 3 SGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGE 62
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
Y V L +Y F+V A N+ G S +
Sbjct: 63 DLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS 104
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-10
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 587 AGSTSLDLS---------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
AG T L L + + YI++ +E+ S K D L YTV+NLR ++Y
Sbjct: 19 AGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKY-DGEDLAYTVKNLRRSTKY 77
Query: 638 YFQVFAENSVGLGP 651
F+V A NS G
Sbjct: 78 KFKVIAYNSEGKSN 91
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 5e-27
Identities = 57/378 (15%), Positives = 96/378 (25%), Gaps = 129/378 (34%)
Query: 399 WWFESKYKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
W+ I + E +R T+ N + G Y C+AT+ G
Sbjct: 37 WYN----PQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT------ 86
Query: 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNL 515
+ T L+I +
Sbjct: 87 -----------------------------------QEATVVLEIYQKLT------FREVV 105
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
Q +V + P P +SW+ + E+T R +
Sbjct: 106 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN------------- 152
Query: 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
N+L+ + N D+
Sbjct: 153 ---------------------------------NNLQILNI-------------NKSDEG 166
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695
Y + EA E+ + P A ++ T + + +
Sbjct: 167 IY--RCEGRV------EARGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCR 217
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755
SP P+I WFRN K + + + I G N L ++ + D G Y ATN+ G
Sbjct: 218 ASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINS-DGGPYVCRATNKAGED 274
Query: 756 THGARVTVDVEKVGRPSI 773
A + V +
Sbjct: 275 EKQAFLQV----FVQHHH 288
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 49/246 (19%), Positives = 84/246 (34%), Gaps = 27/246 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDSS 59
E + LTI +D G Y ++A GQ AT + + + +
Sbjct: 56 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED 115
Query: 60 VTLHWR-----PPQDDGHSPVT----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
+ R P V+ + + + F + + ++ +
Sbjct: 116 AEVVCRVSSSPAPA------VSWLYHNEEVTTISDNRFAM-----LANNNLQILNINKSD 164
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
E ++R G V+V P A + + ++ A +T C SG
Sbjct: 165 EGIYRCEGRV-EARGEIDFRDIIVIVNVP---PAISMPQKSFNATAERGEEMTFSCRASG 220
Query: 171 VPTPDIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
P P I W+++ LI+ + + TV N S G Y C+ATN+AG E L
Sbjct: 221 SPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Query: 230 LVQGKE 235
V +
Sbjct: 281 QVFVQH 286
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 2e-20
Identities = 52/345 (15%), Positives = 94/345 (27%), Gaps = 95/345 (27%)
Query: 302 STPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK-GKEIKESARHIITSRGTQ 360
S ++ L V L F + W G++I + R ++ G +
Sbjct: 1 SMALLQVTISLSKVELSVG-ESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVR 59
Query: 361 RKLVIKRVTQDD-------------ETDIGVLALNVKS----VSKLKWLDFGSGG----- 398
+L I +D +T + L + + +F G
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 119
Query: 399 ------------WWFESKYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKA 442
W + + R NN + N ++S EG Y C+
Sbjct: 120 CRVSSSPAPAVSW-----LYHNEEVTTISDNRFAMLANNNLQIL--NINKSDEGIYRCEG 172
Query: 443 TNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502
EA R + + P
Sbjct: 173 RVEARG----------------------------------------EIDFRDIIVIVNVP 192
Query: 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE 562
P I + + + + G P P ISW +NG I +++ + +
Sbjct: 193 PA---ISMPQ-KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGS 246
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQ 605
+ + + +++ +D Y ATN AG LQV +
Sbjct: 247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHHH 291
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 8e-20
Identities = 43/281 (15%), Positives = 79/281 (28%), Gaps = 71/281 (25%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVAR 198
+ L S C G P + I + E +R
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ------------------------- 232
T+ N + G Y C+AT+ G + + L +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 233 --------------GKEIKESA--RHIITARGTQRKLVIKRVTQDDETDIGV---LALNV 273
+E+ + R + A L I + + DE G+
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQILNINKSDE---GIYRCEGRVE 175
Query: 274 KSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-S 332
+++ PA+ K + T + TF S S
Sbjct: 176 A-----------RGEIDFRDII--VIVNVPPAISMPQKSFNAT-AERGEEMTFSCRASGS 221
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
P+ + W + GK I+E+ ++I+ T+ L ++ + D
Sbjct: 222 PEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDG 260
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 58/193 (30%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
A +A G T + + +E + + C VS P P +
Sbjct: 79 ATDAKGQ--TQEATVVLEIYQK-----LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131
Query: 178 WYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNEA-GTAETSCTLLVQ 232
W + + R NN + N ++S EG Y C+ EA G + +++
Sbjct: 132 WLYHNEEVTTISDNRFAMLANNNLQIL--NINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
Query: 233 ------------------------------------------GKEIKESARHIITARGTQ 250
GK I+E+ ++I+ T+
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 249
Query: 251 RKLVIKRVTQDDE 263
L ++ + D
Sbjct: 250 --LTVRNIINSDG 260
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
+ + + P + + ++S+ + +G L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 732 LKEADSETDAGDYKVVATNELGSATHG-ARVTV 763
+ A+ E DAG Y+ AT+ G + +
Sbjct: 64 IYNANIE-DAGIYRCQATDAKGQTQEATVVLEI 95
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-27
Identities = 27/90 (30%), Positives = 33/90 (36%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
AP LKD L+C V G P P I W + I+ T E VA +
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQ 69
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ G YTC A N G S + V
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCSAWVTVH 99
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 8e-20
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR 720
+ + G AP F ++ V E L V+ +P P I W N +P+ + R
Sbjct: 1 GSSGSSGME-VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---R 56
Query: 721 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ L +++A E D G Y +A N LG + A VTV
Sbjct: 57 STCEAGVAELHIQDALPE-DHGTYTCLAENALGQVSCSAWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553
+ + ++ P S LK + + ++ G P P I+W+ NG I +
Sbjct: 3 SGSSGMEVAPS------FSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA- 55
Query: 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
R + + + I + D TYT A NA G S + V
Sbjct: 56 --RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+ I+ T E VA + + G YTC A N G
Sbjct: 46 LLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
F S L ++ D Q + +P ++ WL G+ I+ + L I
Sbjct: 13 SFSSVLKDCAVIEG-QDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE---LHI 68
Query: 366 KRVTQDDE 373
+ +D
Sbjct: 69 QDALPEDH 76
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-----SH 83
+S T PG P I SVTL +RP DG + ++ +++E
Sbjct: 3 SGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVG 61
Query: 84 DKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+ +E+++ +++ + + EV L Y FR+ VN +GT P S +R +
Sbjct: 62 EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 598 VLGYIIQQQEKNSLKFTKVATL-----DPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ ++++ Q + + + +P V +L + Y F++ N VG P
Sbjct: 48 ISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSP 106
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 38/249 (15%), Positives = 60/249 (24%), Gaps = 64/249 (25%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L++ + +S + K G P+P + W + G EI + +
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY--------- 61
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ L V D
Sbjct: 62 ----------------------------------HQLIIASV-------------TDDDA 74
Query: 635 SEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMA 694
+ Y QV A N G T L + P +E + +
Sbjct: 75 TVY--QVRATNQGGSV-SGTASLEVEVP-----AKIHLPKTLEGMGAVHALRGEVVSIKI 126
Query: 695 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
P P I W + + ++ + I L DAG Y V A N G
Sbjct: 127 PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186
Query: 755 ATHGARVTV 763
+ V
Sbjct: 187 DQKTVELDV 195
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-24
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 50/172 (29%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
A AP +E L++ +QS+ TL C V+G P P +KWY+ I + Y +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ------------------------ 232
+ + + ++ Y +ATN+ G+ + +L V+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 233 --------------------GKEIKESARHIITARGTQRK-LVIKRVTQDDE 263
I + + + + + V + D
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 113 MFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP 172
+++V A N G+ S + V+ P P E + A V+++ SG P
Sbjct: 76 VYQVRATNQGGS--VSGTAS-LEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132
Query: 173 TPDIKWYKDDSLIK--GR-NITYENNVARFTVV-NCSESSEGRYTCKATNEAGTAETSCT 228
P I W K LI G + + G Y A N G + +
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192
Query: 229 LLVQ 232
L V
Sbjct: 193 LDVA 196
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 8e-21
Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 49/200 (24%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
Y+ I + Y + + + + ++ Y +ATN+ G+
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG-------- 90
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
T +L+++ P + K + + +
Sbjct: 91 ----------------------------------TASLEVEVPAKIHLPKTL-EGMGAVH 115
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTST 578
+++ + G P P I+W K I ++ ++ + TS + V R D
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 579 YTVTATNAAGSTSLDLSLQV 598
Y V A N G + L V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 4e-19
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 727
AP F E V+ + L+ KV P P + W+R K +++ K I F G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV-EKVGRPSI 773
L + + DA Y+V ATN+ GS + A + V+V K+ P
Sbjct: 62 HQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 5e-11
Identities = 36/191 (18%), Positives = 56/191 (29%), Gaps = 51/191 (26%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH--IITSRGTQRKL 363
F +L ++ + +AT +++ P VKW ++GKEI I +G +L
Sbjct: 6 HFKEELRNLNVRYQ-SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 364 VIKRVTQDDETDIGVLA------------LNVKS---------VSKLKWLDFGSGG---- 398
+I VT DD T V A L V+ + + + G
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 399 -------------WWFESKYKDDSLIK--GR-NITYENNVARFTVV-NCSESSEGRYTCK 441
W K LI G + + G Y
Sbjct: 125 KIPFSGKPDPVITW-----QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 442 ATNEAGTAETR 452
A N G +
Sbjct: 180 AKNRFGIDQKT 190
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-26
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNV 196
P + L D V + V G P P + W ++ ++ E +
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
R ++ G YTCKA NE G + L V+G+
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-21
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 730
P F +++V+E + + +V+ P P + W RN +P+ ++ +G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ A+ DAG Y A NE G+ AR+ V
Sbjct: 65 RILAAERG-DAGFYTCKAVNEYGARQCEARLEV 96
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-12
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 500 QSPPQ--QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI 557
++PP L Q + + ++ G P+P +SW++N + +
Sbjct: 3 KAPPTFKVS--------LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA 54
Query: 558 FIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
E + I + R D YT A N G+ + L+V G
Sbjct: 55 EEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-07
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSR 357
SK+ P F L ++ D + + P V WL+ + ++ R +
Sbjct: 2 SKAPP--TFKVSLMDQSVREG-QDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 358 GTQRKLVIKRVTQDDE 373
G +L I + D
Sbjct: 59 GGLCRLRILAAERGDA 74
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
++ ++ E + R ++ G YTCKA NE G +
Sbjct: 40 LRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-26
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 28 ALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK-D 86
+S T + P P E+ + D SV L W P DD +SP+T +++E D
Sbjct: 1 GSSGSSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMH 59
Query: 87 EFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
+ +W+ + T L+ Y FRV AVN+IG S + + KA +
Sbjct: 60 KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119
Query: 145 P 145
P
Sbjct: 120 P 120
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLD-PSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ +II+ ++ + T NL Y F+V A NS+G
Sbjct: 47 ITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSL 101
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 7e-26
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 28 ALGQASATTKVTLLSAPGAPDTP--EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK 85
+ G + + + + P AP+ P + ++ L W P DG+SP+ Y+LE +
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSEN 60
Query: 86 DE--FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+ ++ ++ +T+ V L Y FR+ AVN +G G S +T V +
Sbjct: 61 NAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESG 117
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-11
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ YI++ E N+ +A++DP TV+ L Y F++ A N VG G
Sbjct: 50 LIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQ 103
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
G + T + P P ++ + +SV+L W P+ DG S + GY++E K
Sbjct: 88 GLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSD 147
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
T +T L EY FRV+A N G + V+ K
Sbjct: 148 KWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTY 101
PG P ++ + +SVTL W PP DG S + Y++E + ++ + T T++
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTR-KAYSTVATNCHKTSW 64
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA-EAPVIQEPLKDSV 155
+V +L Y FRV A N G G + V + + ++SV
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSV 119
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+ YI++++E ++ VAT + + V+ L++ YYF+V AEN G+G A T
Sbjct: 37 IKNYIVEKRESTRKAYSTVAT-NCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAET 93
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 581 VTATNAAGSTSLDLS---------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENL 631
+T S+ LS ++LGYI++ Q K S K+ AT + T+ L
Sbjct: 109 ITLM-DVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VKVTEATITGL 165
Query: 632 RDKSEYYFQVFAENSVGLGPEATT 655
EY F+V A+N G+
Sbjct: 166 IQGEEYSFRVSAQNEKGISDPRQL 189
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 3e-25
Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 59/235 (25%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETS--TIAIYSVVRADTSTYTVTATNAAGST 590
+++++ N EI + ++ ID T + + + D TYT + +
Sbjct: 28 KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 87
Query: 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
ST+ + + + E
Sbjct: 88 H------------------------------STVVLVGDVFKKLQKEAEFQRQEWIRK-- 115
Query: 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRN 709
Q P F+E V + + L KV + IVW+++
Sbjct: 116 --------------------QGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKD 154
Query: 710 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
+ + K F L + E + DAG Y+V+ ++ G ++ +
Sbjct: 155 EREISVDEKHD--FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 206
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 3e-21
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 14/144 (9%)
Query: 103 VTKLTTKHEYMFRVAAVNAIGTG-----------PASHNTRYVVVKAPVDAEAPVIQEPL 151
+ KL + E + + T + + + P E L
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 152 KDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIK-GRNITYENNVARFTVVNCSESSE 209
V + +V L+C V+ + I WYKD+ I +++ + + S+
Sbjct: 125 SWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA 183
Query: 210 GRYTCKATNEAGTAETSCTLLVQG 233
G Y ++ G ++ L+ +
Sbjct: 184 GIYEVILKDDRGKDKSRLKLVDEA 207
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 1e-18
Identities = 28/237 (11%), Positives = 56/237 (23%), Gaps = 63/237 (26%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-----RNITYENNVAR 198
P + L + + + ++ I +I +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRV 258
+ + EG YT + + T ++ L+ +KL +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD----------------VFKKLQKEAE 106
Query: 259 TQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLV 318
Q E + K P F+ L V
Sbjct: 107 FQRQE----------------------------------WIRKQGP--HFVEYLSWE--V 128
Query: 319 PHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
+ +V + + W K +EI +H L+I ++ D
Sbjct: 129 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDA 183
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 2e-16
Identities = 25/200 (12%), Positives = 55/200 (27%), Gaps = 38/200 (19%)
Query: 405 YKDDSLIKG-----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
++ I +I + + + EG YT + + T + +
Sbjct: 38 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL---- 93
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
+ +K + + ++K F S
Sbjct: 94 --VGDVFKKLQKEAEFQRQEWIRKQGPHFVEY------------------------LSWE 127
Query: 520 LSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578
++ + ++ K + I W K+ EI+ + + + T+ I + D
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--KHDFKDGICTLLITEFSKKDAGI 185
Query: 579 YTVTATNAAGSTSLDLSLQV 598
Y V + G L L
Sbjct: 186 YEVILKDDRGKDKSRLKLVD 205
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 5e-16
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 675 FIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 733
F + + EKG +R + K S + + N K + PK + D I+E+
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64
Query: 734 EAD-SETDAGDYKVVATNELGSATHGARVTVDVEK 767
+ D G Y + + + DV K
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK 99
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 4e-10
Identities = 23/197 (11%), Positives = 57/197 (28%), Gaps = 53/197 (26%)
Query: 308 FLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIIT--SRGTQRKL 363
F +V ++ G F Q E S + +V ++ KEI E ++ + ++
Sbjct: 5 FTKSELAVEILEK-GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFE------------------SKY 405
++++ +DE + K+ + + G + +Y
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 123
Query: 406 KDDSLIKGRNITYE------------------------------NNVARFTVVNCSESSE 435
+ N+ + + + + S+
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDA 183
Query: 436 GRYTCKATNEAGTAETR 452
G Y ++ G ++R
Sbjct: 184 GIYEVILKDDRGKDKSR 200
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-25
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
+ S P P++ RS + ++W P +G + VT Y LE + M
Sbjct: 3 SGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVEGSM-QICYCGPG 60
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+YE+ L+ Y RV A++ +G GP S V
Sbjct: 61 LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-08
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 586 AAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
+T ++ + V Y ++ L Y ++ L + Y
Sbjct: 18 CRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEG-SMQICYC--GPGLSYEIKGLSPATTY 74
Query: 638 YFQVFAENSVGLGP 651
Y +V A + VG GP
Sbjct: 75 YCRVQALSVVGAGP 88
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 5e-25
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 43 APGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTT 100
PG P + GR + L W PP DG SP++ Y +E ++ ++ + +
Sbjct: 8 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEK-DEPREVYQGSEVE 66
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V+ L Y FR+ A N +G GP S
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFS 94
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ Y ++ + +V S ++ TV +L Y F++ A N +G GP
Sbjct: 41 ISCYSVEMSPIEKDEPREVY--QGSEVECTVSSLLPGKTYSFRLRAANKMGFGP 92
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 7e-25
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYENNVA 197
P + D ++C VSG+PTPD+ W D ++ + + EN V
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESA 240
+ + G YTC ATN AG S L+V KE S+
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 6e-21
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
GS G P F++ + TV+E R+ KV P P + W + KP+ + +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 727 NII-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
+ L ++ S DAG Y +ATN G + + V K PS
Sbjct: 64 GVHSLIIEPVTSR-DAGIYTCIATNRAGQNSFSLELVVA-AKESGPS 108
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P++SW +G + A ++ + E ++ I V D YT ATN AG S
Sbjct: 35 GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94
Query: 593 DLSLQVLG 600
L L V
Sbjct: 95 SLELVVAA 102
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLV 364
FL +T+ ++S P + W GK ++ + H ++ L+
Sbjct: 11 HFLQAPGDLTVQEG-KLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 365 IKRVTQDDE 373
I+ VT D
Sbjct: 70 IEPVTSRDA 78
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
D ++ + + EN V + + G YTC ATN AG
Sbjct: 44 QLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-24
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 128 SHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK- 186
H+ I + S C G P P + W + ++
Sbjct: 3 HHHHHSSKTTLA-----ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST 57
Query: 187 -GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
R +T + F + + S EG Y+ N G E TL +Q
Sbjct: 58 SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-20
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 722
H A + + TV E + R P P++ W R + L +S + +
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT 64
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
E+ + D G+Y VV N G +T+
Sbjct: 65 TTKYKSTFEISSVQAS-DEGNYSVVVENSEGKQEAEFTLTI 104
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-14
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ++W++ G ++ S ++ + ST I SV +D Y+V N+ G +
Sbjct: 40 GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE 99
Query: 594 LSLQV 598
+L +
Sbjct: 100 FTLTI 104
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRG 358
SK+T A L+K S+T V A F + P V WL+KG+ + SARH +T+
Sbjct: 9 SKTTLAARILTKPRSMT-VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Query: 359 TQRKLVIKRVTQDDE 373
+ I V DE
Sbjct: 68 YKSTFEISSVQASDE 82
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+ ++ R +T + F + + S EG Y+ N G E
Sbjct: 49 LRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA 98
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 1e-24
Identities = 63/406 (15%), Positives = 112/406 (27%), Gaps = 110/406 (27%)
Query: 405 YKDDSLI---KGRNITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
KD ++ N + + EG Y C+A+ +
Sbjct: 57 KKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS-------- 108
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
++S RT + + P + S +S
Sbjct: 109 -----IIS---------------------------RTAKVMVAGPLR------FLSQTES 130
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+ ++ + G P P I W KN ++ + + + I + D+
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSG 190
Query: 578 TYTVTATNAAGS-TSLDLSLQVLG-------YIIQQQEKN-------SLKFTKVATLDP- 621
Y +A N A + T + +++L Q+ N + P
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 622 ------------------------STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
S L + D Y A+ EL
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTY--TCVVTYKNEN-ISASAEL 307
Query: 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP 717
L P F+ E I V P P++ W +N ++ S
Sbjct: 308 TVLV----------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD 357
Query: 718 KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + IL + ++D G Y+ VA NE G+A A++ V
Sbjct: 358 YFQIVGGSNLRILGV----VKSDEGFYQCVAENEAGNAQSSAQLIV 399
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 53/308 (17%), Positives = 84/308 (27%), Gaps = 64/308 (20%)
Query: 7 TLTIVKFEDKDLGDYT--ISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLH 63
+ + D G Y SL ++ S T KV + E I +V L
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 64 WRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVA 117
G T L D +V S ++++L ++R +
Sbjct: 143 CEVI---GDPMPTIHWQKNQQDLNPIPGDSRVVV----LPSGALQISRLQPGDSGVYRCS 195
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
A N T + ++ P + + +A LEC VSG P P
Sbjct: 196 ARNPAST-RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254
Query: 178 WYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ-- 232
W + + +I + + + N ++ G YTC T + S L V
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSNLLIS--NVTDDDSGTYTCVVTYKNENISASAELTVLVP 312
Query: 233 -------------------------------------GKEIKESARHIITARGTQRKLVI 255
G + S I L I
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LRI 369
Query: 256 KRVTQDDE 263
V + DE
Sbjct: 370 LGVVKSDE 377
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-23
Identities = 44/251 (17%), Positives = 72/251 (28%), Gaps = 47/251 (18%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQ-ASATTKVTLLSAPGAPDTPEIV-------GR 55
S L I + + D G Y S N +V +LS PG +
Sbjct: 175 PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Query: 56 SDSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
L W + + + + +
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWL--RGEEVIQLRSKKYSLLG-------------GSNLLI 279
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT 163
+ +T + S + + V P P + A +
Sbjct: 280 SNVTDDDSGTYTCVVTYKNEN--ISASAE-LTVLVP-----PWFLNHPSNLYAYESMDIE 331
Query: 164 LECVVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221
EC VSG P P + W K+ ++ + ++ +S EG Y C A NEAG
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS--NLRILGVVKSDEGFYQCVAENEAG 389
Query: 222 TAETSCTLLVQ 232
A++S L+V
Sbjct: 390 NAQSSAQLIVP 400
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 7e-22
Identities = 49/281 (17%), Positives = 77/281 (27%), Gaps = 54/281 (19%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETS----TIAIYSVVRADTSTYTVTATNAAG- 588
P I W K+G + R S I + D Y A+
Sbjct: 48 DRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSG 107
Query: 589 ---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLD-----------------------PS 622
S + + + + Q E + L P
Sbjct: 108 SIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPG 167
Query: 623 TLQYTVE---NLR-------DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQA 672
+ V L+ D Y + A N E+ L+ +
Sbjct: 168 DSRVVVLPSGALQISRLQPGDSGVY--RCSARNPASTRTGNEAEVRILS----DPGLHRQ 221
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
F++R E L V P PS W R + + KK + G N L +
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN--LLI 279
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
++ D+G Y V T + + + A +TV V P
Sbjct: 280 SNV-TDDDSGTYTCVVTYKNENISASAELTVLV----PPWF 315
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 1e-20
Identities = 64/425 (15%), Positives = 114/425 (26%), Gaps = 121/425 (28%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDI 176
+ + + SH+ + + D+V +V L C P I
Sbjct: 3 WGSELES---SHHHHHHGGRRS-----LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVI 54
Query: 177 KWYKDDSLI---KGRNITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
KW KD ++ N + + EG Y C+A+ + S T
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA 114
Query: 230 LVQ-----------------------------------------GKEIKESA---RHIIT 245
V +++ R ++
Sbjct: 115 KVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL 174
Query: 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305
G L I R+ D A N S +++ + +
Sbjct: 175 PSGA---LQISRLQPGDSGVYRCSARNPASTR-----TGNEAEVRILS-----DPGLHRQ 221
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIK-ESARHIITSRGTQRKL 363
+ FL + +V + DA + +S P WL+ + I+ S ++ + L
Sbjct: 222 LYFLQRPSNVIAIEG-KDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN---L 277
Query: 364 VIKRVTQDDE------------TDIGVLALNVKS----VSKLKWLDFGSGG--------- 398
+I VT DD L V ++ L
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVS 337
Query: 399 --------WWFESKYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
W K+ ++ + ++ +S EG Y C A NEAG
Sbjct: 338 GKPVPTVNW-----MKNGDVVIPSDYFQIVGGS--NLRILGVVKSDEGFYQCVAENEAGN 390
Query: 449 AETRT 453
A++
Sbjct: 391 AQSSA 395
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNK 711
+EL + H G ++ F+ + G + L ++ P I W ++
Sbjct: 3 WGSELESSHHHHHHGGR-RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 712 PLLSSPKKREIF--DGENIILELKEAD-SETDAGDYKVVATNELGSAT--HGARVTV 763
L R+ +G +I + + + D G Y+ A+ + A+V V
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-24
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYENNVAR 198
P + ++ ++ VSG+P PD+ WY + ++ + I E +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
S G Y C A N AG A + L V KE
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-20
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
P FI+ E ++ E R+ KV PAP + W+ N + + S + I + +
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 729 I-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
L + +DAG Y VA N G AT ++ V ++
Sbjct: 62 HSLIFEVV-RASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVR 573
++ + +++ K G P P++SW NG + ++ + E+ ++ V
Sbjct: 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQVLG 600
+D Y A N AG + + L VL
Sbjct: 72 SDAGAYACVAKNRAGEATFTVQLDVLA 98
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLV 364
F+ ++++ ++S P V W G+ ++ H +I S L+
Sbjct: 7 RFIQVPENMSIDEG-RFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 365 IKRVTQDDE 373
+ V D
Sbjct: 66 FEVVRASDA 74
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
Y + ++ + I E + S G Y C A N AG A
Sbjct: 40 YLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-24
Identities = 62/370 (16%), Positives = 107/370 (28%), Gaps = 104/370 (28%)
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
G Y C ATN GT +R S+ + + + ++ + V F+
Sbjct: 74 AGSYQCVATNARGTVVSREA------SLRFGFLQEFSAEERDPVKITEGWGVMFTC---- 123
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
SPP +P W+ N
Sbjct: 124 ------SPPP-----------------------------HYPALSYRWLLNEFPNFIPAD 148
Query: 555 CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-------------SLDLSLQVLGY 601
R F+ + T + I +D Y+ AT+ + + + Q
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPS 208
Query: 602 IIQQQEKN-------SLKFTKVATLDP---------------------STLQYTVENLRD 633
I + + + A +P L + D
Sbjct: 209 IKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFED 268
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM 693
+ Y + AEN G ++ A P +++ + +R
Sbjct: 269 EGTY--ECEAENIKG-RDTYQGRIIIHA----------QPDWLDVITDTEADIGSDLRWS 315
Query: 694 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753
P P++ W R+ +PL S + E+ GE +L DS G Y+ VA N+ G
Sbjct: 316 CVASGKPRPAVRWLRDGQPLASQN-RIEVSGGELRFSKLVLEDS----GMYQCVAENKHG 370
Query: 754 SATHGARVTV 763
+ A +TV
Sbjct: 371 TVYASAELTV 380
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 4e-21
Identities = 53/256 (20%), Positives = 88/256 (34%), Gaps = 55/256 (21%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQA-----SATTKVTLLSAPGAPDTPEIVGRS-- 56
+ L I K E DLG+Y+ ++ + S ++++L + P I +
Sbjct: 156 TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPA 215
Query: 57 ------DSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
VTL WR + DG +K ++
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWR--KLDGSQT-----------------SKWLSSE 256
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
+ + + E + A N G ++ R +++ A P + + D+ A
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGR--DTYQGR-IIIHAQ-----PDWLDVITDTEADI 308
Query: 159 QSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
S + CV SG P P ++W +D L I RF+ + G Y C A
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL--VLEDSGMYQCVAE 366
Query: 218 NEAGTAETSCTLLVQG 233
N+ GT S L VQ
Sbjct: 367 NKHGTVYASAELTVQA 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 4e-21
Identities = 45/269 (16%), Positives = 73/269 (27%), Gaps = 49/269 (18%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG---ST 590
P W NG E+ R + I V D +Y ATNA G S
Sbjct: 33 ANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI-SNPVKAKDAGSYQCVATNARGTVVSR 91
Query: 591 SLDLSLQVLGYIIQQ-------QEKNSLKFT----------------------------K 615
L L + E + FT +
Sbjct: 92 EASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR 151
Query: 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675
+ L D Y FA + + ++ + + A + AP
Sbjct: 152 FVSQTTGNLYIAKTEASDLGNY--SCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSI 209
Query: 676 IERF-EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 734
+F + + L +P P I W + + K + +L ++
Sbjct: 210 KAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ---TSKWLSSEP---LLHIQN 263
Query: 735 ADSETDAGDYKVVATNELGSATHGARVTV 763
D G Y+ A N G T+ R+ +
Sbjct: 264 V-DFEDEGTYECEAENIKGRDTYQGRIII 291
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 7e-21
Identities = 44/239 (18%), Positives = 70/239 (29%), Gaps = 21/239 (8%)
Query: 7 TLTIVK-FEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTP--EIVGRSDSSVTL 62
L I + KD G Y +NA G S + + V
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121
Query: 63 HWRPPQDDGHSPVT-----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVA 117
PP D F+ T+ + K +
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-----QTTGNLYIAKTEASDLGNYSCF 176
Query: 118 AVNAIGTGPASHNTRY----VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
A + I S +++ + + + + D+ A VTLEC G P
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV 236
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
P IKW K D + ++ E + + N EG Y C+A N G +++
Sbjct: 237 PQIKWRKLDGSQTSKWLSSEPLL---HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 60/399 (15%), Positives = 101/399 (25%), Gaps = 111/399 (27%)
Query: 142 AEAPVIQEPLKDSV---AGFQSSVTLECVVSGVPTPDIKWYKDDSLIK----GRNITYEN 194
+ PV +E ++ + VTL C P +W + + +K R
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG--------------------- 233
++ V G Y C ATN GT + L G
Sbjct: 62 DLVISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 234 ------------------------KEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269
+ R + G L I + D +
Sbjct: 120 MFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCF 176
Query: 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE 329
A + ++++ + E A +K P+ T T +
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAA------EDARQYAPSIKAKFPADTYALTGQMVTLECF 230
Query: 330 LS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDI 376
+P Q+KW K ++S L I+ V +DE D
Sbjct: 231 AFGNPVPQIKWRKLDGSQT---SKWLSSEPL---LHIQNVDFEDEGTYECEAENIKGRDT 284
Query: 377 GVLALNVKS----VSKLKWLDFGSGG-----------------WWFESKYKDD-SLIKGR 414
+ + + + + + G W +D L
Sbjct: 285 YQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW-----LRDGQPLASQN 339
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
I RF+ + G Y C A N+ GT
Sbjct: 340 RIEVSGGELRFSKL--VLEDSGMYQCVAENKHGTVYASA 376
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 45/336 (13%), Positives = 81/336 (24%), Gaps = 97/336 (28%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEI---KESARHIITSRGTQR 361
EF ++ + F P + +WL + R + + G
Sbjct: 102 EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN-- 159
Query: 362 KLVIKRVTQDDETD--------IGVLALNVKSVSKLKWLDFGSGGWW----FESKYKDDS 409
L I + D + I + +V S L + D
Sbjct: 160 -LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 410 LIKGRNIT-------------------------YENNVARFTVVNCSESSEGRYTCKATN 444
+ G+ +T + ++ + N EG Y C+A N
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
G + I + P
Sbjct: 279 IKGRDTY------------------------------------------QGRIIIHAQPD 296
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
+ + S + G PRP + W+++G + RI +
Sbjct: 297 ------WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN--RIEVSG--G 346
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ +V D+ Y A N G+ L V
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 52/356 (14%), Positives = 82/356 (23%), Gaps = 90/356 (25%)
Query: 308 FLSKLPSVTLVPHLGDATFQVE---LSSPDIQVKWLKKGKEIKESA-RHIITSRGTQRKL 363
F + + + ++P +W G E+K G L
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD---L 63
Query: 364 VIKRVTQDDETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNIT- 417
VI + D G +A N VS+ L FG + + + +G +
Sbjct: 64 VISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121
Query: 418 -----------------------YENNVARFTVV--------NCSESSEGRYTCKATNEA 446
+ RF S G Y+C AT+
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI 181
Query: 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQP 506
LS+ D R P I++
Sbjct: 182 DFITKSVFSKFSQLSLAAE----DARQYAP---------------------SIKAKFPAD 216
Query: 507 AIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTI 566
L + +E FG P P+I W K T +
Sbjct: 217 TYALTGQMVT-----------LECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLL 259
Query: 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG--YIIQQQEKNSLKFTKVATLD 620
I +V D TY A N G + + + +
Sbjct: 260 HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWS 315
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 8e-10
Identities = 24/148 (16%), Positives = 41/148 (27%), Gaps = 13/148 (8%)
Query: 622 STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE 681
+ +D Y Q A N+ G ++ A+L E +
Sbjct: 62 DLVISNPVKAKDAGSY--QCVATNARG---------TVVSREASLRFGFLQEFSAEERDP 110
Query: 682 KTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETD 740
+ E + PA S W N P R L + + ++ D
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS-D 169
Query: 741 AGDYKVVATNELGSATHGARVTVDVEKV 768
G+Y AT+ + T +
Sbjct: 170 LGNYSCFATSHIDFITKSVFSKFSQLSL 197
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 671 QAPLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGE 726
P+F E+ E + + L + +A+P + W N L P R + G+
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+I DAG Y+ VATN G+ + A +
Sbjct: 63 LVIS---NPVKAKDAGSYQCVATNARGTVVSREASLRF 97
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 4e-24
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENN--VA 197
AP+ + SV LEC +S +P P + W +++ +++ R Y++N
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ + ++ G YT A NEAG + L V +
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 3e-20
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 726
+AP+FI + + K V E +++L ++ A P P + W RNN+ + + + ++ +
Sbjct: 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ L +K+ + + DAG Y V A NE G T R+ V RP+
Sbjct: 72 RVTLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDVTA----RPNQ 113
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-12
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGSTS 591
P P++ W +N + + + T T+ I V + D YTV+A N AG T+
Sbjct: 41 AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTT 100
Query: 592 LDLSLQVLG 600
+ L V
Sbjct: 101 CNTRLDVTA 109
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 405 YKDDSLIK---GRNITYENN--VARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+++ +++ R Y++N + + ++ G YT A NEAG T
Sbjct: 50 KRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNT 103
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH--IIT 355
E K P F+ K S ++ + ++S P ++ W + + ++ + +
Sbjct: 11 EHKRAP--MFIYKPQSKKVLEG-DSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ 67
Query: 356 SRGTQRKLVIKRVTQDDE 373
+ L+IK V + D
Sbjct: 68 DNTGRVTLLIKDVNKKDA 85
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 4e-24
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTT 100
S P P + + +SVTL W PVT Y ++ + +++ +T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
Y + L+ EY FRV AVN+IG GP S R +
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG 102
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
V Y IQ + + + +T +Y++ L SEY F+V A NS+G GP
Sbjct: 36 VTYYGIQYRAAGT-EGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGP 88
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 5e-24
Identities = 43/254 (16%), Positives = 66/254 (25%), Gaps = 22/254 (8%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDS 58
+ +D +L ++ + D G Y G A S +P
Sbjct: 57 LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116
Query: 59 SVTLHWRPPQDDGHSPVT-------GYVLESHDKDEFMVWNKIETTSTTY--EVTKLTTK 109
L P + + + D +F Y VTK
Sbjct: 117 PFQLDCVLP--NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS 174
Query: 110 HEYMFRVAAVNAIGTGP---ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC 166
Y + A NA + + V PV Q KD +A + C
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYC 234
Query: 167 VVSGVPTPDIKWYKDDSLIKGRNITYENNVARF-----TVVNCSESSEGRYTCKATNEAG 221
+ P ++K+ + G R EG YTC+ N G
Sbjct: 235 MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG 294
Query: 222 TAET-SCTLLVQGK 234
+ S L V
Sbjct: 295 KPQKHSLKLTVVSA 308
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 6e-24
Identities = 64/407 (15%), Positives = 104/407 (25%), Gaps = 110/407 (27%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIK--GRNITYENN 195
PVD + PV+++ + + + LEC++ G W KD N +
Sbjct: 2 PVD-KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAET------------------------------ 225
+ S EG Y C A AG A +
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 226 SC------------------TLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIG 267
C R G L VT++D +DI
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGN---LYFTIVTKEDVSDIY 177
Query: 268 V---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDA 324
A N + L + + S +
Sbjct: 178 KYVCTAKNAAV-DEEVVLVEYEIKGVTKD-----NSGYKGEPVPQYVSKDMMAKAG-DVT 230
Query: 325 TFQVELS-SPDIQVKWLKKGKEIKESARHIIT--SRGTQRKLVIKRVTQDD--------E 373
+P + K GK++ + IT +R + ++L+ K +D +
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 374 TDIG-----VLALNVKS----VSKLKWLDFGSGG------------------WWFESKYK 406
+G L L V S K + + G W
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW-----SH 345
Query: 407 DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+ + G T ++ +G Y C+ATNE G T
Sbjct: 346 NAKPLSGGRATVTDSGLVIK--GVKNGDKGYYGCRATNEHGDKYFET 390
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 41/278 (14%), Positives = 72/278 (25%), Gaps = 52/278 (18%)
Query: 534 GFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG---S 589
G + + SW K+G + +E ++ +D Y A AG S
Sbjct: 32 GNDQGVKYSWKKDGKSYNWQEHNAALRKDE-GSLVFLRPQASDEGHYQCFAETPAGVASS 90
Query: 590 TSLDLSLQVLGYIIQQQEKNSLKFTKVATLD---------------------PSTLQYTV 628
+ L + + + + LD T
Sbjct: 91 RVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD 150
Query: 629 ENLR--------------------DKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668
+ R D +Y A+N+ E
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKY--VCTAKNAAVDEEVVLVEYEIKGVTKDNSG 208
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 726
P+ ++ K + ++P +F+N K + +P+ R
Sbjct: 209 YKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
L K E D G Y N +G H ++TV
Sbjct: 269 GKRLLFKTTLPE-DEGVYTCEVDNGVGKPQKHSLKLTV 305
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 85/497 (17%), Positives = 131/497 (26%), Gaps = 159/497 (31%)
Query: 313 PSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRV 368
P+ L +E + ++ W K GK + G+ LV R
Sbjct: 13 PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS---LVFLRP 69
Query: 369 TQDDE--------TDIGVLALNVKSVSKLKWLDFGSG--------GW------------- 399
DE T GV + V S K + + G
Sbjct: 70 QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP 129
Query: 400 -----WF----ESKYKDDSLIKGRNIT-YENNVARFTVVNCSESS-EGRYTCKATNEAGT 448
W + D R IT + FT+V + S +Y C A N A
Sbjct: 130 KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD 189
Query: 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAI 508
E + I + P Q +
Sbjct: 190 EEVVLV----EYEIKGVTKDNSGYKGEP---------------------VPQYVSK---- 220
Query: 509 KLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAI 568
+ Y P ++ KNG ++ + RI TS
Sbjct: 221 --------DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG--- 269
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628
L F
Sbjct: 270 ----------------------------------------KRLLFKTT------------ 277
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688
D+ Y +N VG + + +L ++ AP + ++ E+ V ++G
Sbjct: 278 -LPEDEGVY--TCEVDNGVGKPQKHSLKLTVVS----------APKYEQKPEKVIVVKQG 324
Query: 689 -TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747
+ + KV PAP++VW N KPL S + + D +I +K D G Y
Sbjct: 325 QDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSGLVIKGVKNGDK----GYYGCR 378
Query: 748 ATNELGSATHGARVTVD 764
ATNE G V V+
Sbjct: 379 ATNEHGDKYFETLVQVN 395
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 3e-20
Identities = 44/256 (17%), Positives = 75/256 (29%), Gaps = 48/256 (18%)
Query: 4 DSATLTI--VKFEDK-DLGDYTISLSNALGQ-----ASATTKVTLLSAPGAPDTPEIVGR 55
L V ED D+ Y + NA K G P
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYV 218
Query: 56 SD-------SSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET 96
S ++ + G + + +D N+ T
Sbjct: 219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFK---------NGKDVNGNPEDRITRHNR--T 267
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI-QEPLKDSV 155
+ + E ++ N +G ++ + V + P Q+P K V
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGK--PQKHSLKLTVVSA-----PKYEQKPEKVIV 320
Query: 156 AGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
VT+ C V+G+P P++ W + + G T ++ +G Y C+
Sbjct: 321 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIK--GVKNGDKGYYGCR 378
Query: 216 ATNEAGTAETSCTLLV 231
ATNE G + V
Sbjct: 379 ATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 4e-19
Identities = 61/486 (12%), Positives = 98/486 (20%), Gaps = 177/486 (36%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDI 176
A G +S + + L+CV+ + P P I
Sbjct: 81 AETPAGV-ASSRVISFRK------TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI 133
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEI 236
W K S
Sbjct: 134 TWKKRLS--------------------------------------------GADPNADVT 149
Query: 237 KESARHIITARGTQRKLVIKRVTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTA 293
R G L VT++D +DI A N + L + +
Sbjct: 150 DFDRRITAGPDGN---LYFTIVTKEDVSDIYKYVCTAKNAAV-DEEVVLVEYEIKGVTKD 205
Query: 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH 352
S + +P + K GK++ +
Sbjct: 206 -----NSGYKGEPVPQYVSKDMMAKAG-DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED 259
Query: 353 IITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIK 412
R+T+ + T L
Sbjct: 260 --------------RITRHNRTSGKRLLFK------------------------------ 275
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472
EG YTC+ N G + ++
Sbjct: 276 ----------------TTLPEDEGVYTCEVDNGVGKPQKHSL------------------ 301
Query: 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532
L + S P+ K + + K
Sbjct: 302 -----------------------KLTVVSAPK-----YEQKPEKVIVVKQGQDVTIPCKV 333
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W N ++ R + + S + I V D Y ATN G
Sbjct: 334 TGLPAPNVVWSHNAKPLSGG---RATVTD--SGLVIKGVKNGDKGYYGCRATNEHGDKYF 388
Query: 593 DLSLQV 598
+ +QV
Sbjct: 389 ETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 9e-11
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIF--DGEN 727
+ P+ ++ E +E L ++ + W ++ K + +G
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64
Query: 728 IILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 763
+ L + +D G Y+ A G A+
Sbjct: 65 VFLRPQ----ASDEGHYQCFAETPAGVASSRVISFRK 97
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 23/143 (16%), Positives = 35/143 (24%), Gaps = 20/143 (13%)
Query: 640 QVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 699
Q FAE G VA + + + EKT E +L + +
Sbjct: 78 QCFAETPAG---------VASSRVISF-RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNA 127
Query: 700 -PAPSIVWFRNNKPLLSSPKKREI-------FDGENIILELKEADSETDAGDYKVVATNE 751
P P I W + + + DG + + D D Y A N
Sbjct: 128 YPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS-DIYKYVCTAKNA 186
Query: 752 LGSA-THGARVTVDVEKVGRPSI 773
+
Sbjct: 187 AVDEEVVLVEYEIKGVTKDNSGY 209
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 6e-24
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRN---ITYENNVARF 199
++ + +V V C + + WY ++ ITYE+ VA
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
V + ++ +G Y CK N+ G + L V+G
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-18
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIIL 730
+ + +E G ++ + K++ + + W+ + L +S K ++ IL
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+K+ D G Y+ N+ G + A + V
Sbjct: 61 YVKDITKL-DDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 510 LVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAI 568
+V + K K + + +++W ++ +S+ I ++ + + +
Sbjct: 3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYV 62
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ + D TY N G S L V G
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-08
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 308 FLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
++ G + ++E QV W ++++ S ++ IT L +
Sbjct: 4 VSGQIMHAV-GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYV 62
Query: 366 KRVTQDDE 373
K +T+ D+
Sbjct: 63 KDITKLDD 70
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
Y ++ ITYE+ VA V + ++ +G Y CK N+ G +
Sbjct: 37 YFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 6e-24
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE-----FMVWNKIETTS 98
P +P + V S+ + + P+ G P+ Y E E K +
Sbjct: 7 PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L + Y R+AA+N G G S +
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-08
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 587 AGSTSLDLS---------LQVLGYIIQQQEKNS---LKFTKVATLDPSTLQYTVENLRDK 634
S++ + + +L Y + + A T+ L+ +
Sbjct: 17 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 76
Query: 635 SEYYFQVFAENSVGLGP 651
+ Y ++ A N GLG
Sbjct: 77 TTYAVRLAALNGKGLGE 93
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 1e-23
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
G + T P AP S + L WR P D H Y +
Sbjct: 4 GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR 63
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V N + L Y+FRV A N G+G +S
Sbjct: 64 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESS 104
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-11
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 579 YTVTATNAAGSTSLDLS---------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629
V A+ + + L+ L Y + ++ + T P +Q T++
Sbjct: 22 RDVVAS-LVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQ 80
Query: 630 NLRDKSEYYFQVFAENSVGLGP 651
NL + Y F+V A+N G G
Sbjct: 81 NLMPATVYIFRVMAQNKHGSGE 102
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 1e-23
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
+ AP + LK VT C V+G P P I W+KD I ++ Y +
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ +G YT A N G + L+VQ
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-22
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
AP F + + + E + +V +P P I WF++ K + I +
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 728 II--LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
L + + D G+Y ++A N G + R+ V G S
Sbjct: 64 GTCSLHTTASTLD-DDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVV 572
LK ++ + G P+P+I W K+G +I+ + T ++ +
Sbjct: 15 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 74
Query: 573 RADTSTYTVTATNAAGSTSLDLSLQVLG 600
D YT+ A N G S L V
Sbjct: 75 LDDDGNYTIMAANPQGRISCTGRLMVQA 102
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRG 358
S S+ A F KL + TF ++ +P ++ W K GK+I + H R
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 61
Query: 359 TQ--RKLVIKRVTQDDE 373
L T DD+
Sbjct: 62 LDGTCSLHTTASTLDDD 78
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
+KD I ++ Y + + +G YT A N G
Sbjct: 43 FKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCT 95
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 1e-23
Identities = 49/234 (20%), Positives = 80/234 (34%), Gaps = 67/234 (28%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G PRP+I W K G ++++ + I D D
Sbjct: 32 GDPRPKIVWNKKGKKVSNQRFEVIEFD--------------------------------D 59
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
S VL IQ + RD++ Y + A N+VG E
Sbjct: 60 GSGSVL--RIQP----------------------LRTPRDEAIY--ECVASNNVG---EI 90
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+ L P P + K V+ T ++ +P P I WF++ P+
Sbjct: 91 SVS-TRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPV 149
Query: 714 LSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+S I L++++++ D G Y+ VATN G+ + A + V
Sbjct: 150 DTSNNNGRIKQLRSESIGALQIEQSEES-DQGKYECVATNSAGTRYSAPANLYV 202
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 1e-22
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 113 MFRVAAVNAIGTGPASHNTR-YVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
++ A N +G S +TR V+ + + P I + V + T+ C SG
Sbjct: 78 IYECVASNNVGE--ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 172 PTPDIKWYKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
P P+I W+KD + N ++ + ES +G+Y C ATN AGT +
Sbjct: 136 PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS 195
Query: 226 -SCTLLVQGKEIKESARH 242
L V+G + H
Sbjct: 196 APANLYVRGTK-HHHHHH 212
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 9e-20
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVAR 198
P D + C +G P P I W K + + + + +
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 199 FTVVNCSESS-EGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITAR 247
+ E Y C A+N G S L V ++ I
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMG 114
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 9e-19
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 730
P F ++T G + + P P IVW + K + + + F DG +L
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHYLAQST 790
++ + D Y+ VA+N +G + R+TV E +ID+ Q
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGP-------QLK 118
Query: 791 EVDVTST 797
V+ T T
Sbjct: 119 VVERTRT 125
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-14
Identities = 35/205 (17%), Positives = 55/205 (26%), Gaps = 50/205 (24%)
Query: 405 YKDDSLIKGRNITY----ENNVARFTVVNCSESS-EGRYTCKATNEAGTAETRTMWPGLP 459
K + + + + + + E Y C A+N G T
Sbjct: 41 NKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVST------ 94
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
+ V R P I PQ +
Sbjct: 95 -RLTVLREDQIPRGFP----------------------TIDMGPQ------------LKV 119
Query: 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA---CRIFIDEETSTIAIYSVVRADT 576
+ + G P PEI+W K+ + S + E + I +D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 577 STYTVTATNAAGST-SLDLSLQVLG 600
Y ATN+AG+ S +L V G
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRG 204
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 45/191 (23%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSR-GTQRKLV 364
F T V G A+F + + P ++ W KKGK++ +I G+ L
Sbjct: 8 RFTRTPVDQTGVSG-GVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 365 IKRV-TQDDETDIGVLALN----VKSVSKLKWL---DFGSGGWWFESK------------ 404
I+ + T DE +A N + ++L L G +
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 405 ----------------YKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKA 442
+KD + N ++ + ES +G+Y C A
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA 186
Query: 443 TNEAGTAETRT 453
TN AGT +
Sbjct: 187 TNSAGTRYSAP 197
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 2e-23
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
G + + P P +S+ + W+ P+ + P+ GY +E + E
Sbjct: 4 GSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGE 61
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
N T+ V L H Y+FRV A + G G + +++ V
Sbjct: 62 LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV--ITIESQVSG 114
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-12
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 586 AAGSTSLDLSLQ-------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
A G TSL +S Q + GY ++ Q N + ++ +P+ VE+L Y
Sbjct: 28 ALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYV 87
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQA 672
F+V A++ G G E + + + P
Sbjct: 88 FRVRAQSQEGWGREREG---VITIESQVSGPSSG 118
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 68/417 (16%), Positives = 116/417 (27%), Gaps = 125/417 (29%)
Query: 405 YKDDSLIK----GRNITYENN---VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
++ R + V F E EG Y C A N+ GTA +
Sbjct: 52 TRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN----- 106
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
LQ+ P +
Sbjct: 107 ------------------------------------RIRLQVSKSP-------LWPKENL 123
Query: 518 QRLSVKSQWKVEVK---YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+ V+ + ++ G P P I WM + E R+ + +V+
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQGH-NGDLYFSNVMLQ 181
Query: 575 DTS-TYTVTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTK--------------- 615
D Y+ A T +L+VL + S + +
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241
Query: 616 ---VATLDP------------------------STLQYTVENLRDKSEYYFQVFAENSVG 648
+A+ P L+ T + D EY A N +G
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY--FCLASNKMG 299
Query: 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708
T + A AP +++ + + RL+ + +P P++ W
Sbjct: 300 -SIRHTISVRVKA----------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Query: 709 NNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
N +PL S+P RE+ I + + + Y+ +NE G A V+V
Sbjct: 349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSR----AVYQCNTSNEHGYLLANAFVSV 401
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-23
Identities = 51/275 (18%), Positives = 80/275 (29%), Gaps = 49/275 (17%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV----RADTSTYTVTATNAAG- 588
G P P W +N +K R+ + + T+ I Y A N G
Sbjct: 43 GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102
Query: 589 --STSLDLSLQVLGYIIQQQEKN-------SLKFT------------------------- 614
S + L + ++ L
Sbjct: 103 ALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD 162
Query: 615 -KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
+V+ L ++ L+D Y A L T G + P
Sbjct: 163 KRVSQGHNGDLYFSNVMLQDMQTDY-SCNARFHFT-HTIQQKNPFTLKVLTTRGVAERTP 220
Query: 674 LFI---ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
F+ + V + L P P I W++ L S K E F+ L
Sbjct: 221 SFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK---AL 277
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ SE D+G+Y +A+N++GS H V V
Sbjct: 278 RITNV-SEEDSGEYFCLASNKMGSIRHTISVRVKA 311
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 8e-22
Identities = 63/401 (15%), Positives = 108/401 (26%), Gaps = 108/401 (26%)
Query: 143 EAPVI-QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK----GRNITYENN-- 195
+ P I ++ KD + + ++ +EC G P P W ++ R +
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 196 -VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV----------------------- 231
V F E EG Y C A N+ GTA ++ L
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPL 134
Query: 232 --------------------QGKEIKESARHIITARGTQRKLVIKRVTQ-DDETDIGVLA 270
+ I + R G L V D +TD A
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD---LYFSNVMLQDMQTDYSCNA 191
Query: 271 LNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL 330
+ + + + ++ TP+ + S +V D +
Sbjct: 192 RFHFTHT-----IQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 331 S-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDIG 377
S P + W KKG ++ L I V+++D +
Sbjct: 247 SGVPTPDIAWYKKGGDLPSDKAKFENFNKA---LRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 378 VLALNVKS----VSKLKWLDFGSGG-----------------WWFESKYKDDSLIK---- 412
+++ VK+ + + K L G W + ++
Sbjct: 304 TISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQW-----MVNGEPLQSAPP 358
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
N + F SS Y C +NE G
Sbjct: 359 NPNREVAGDTIIFRDTQ--ISSRAVYQCNTSNEHGYLLANA 397
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 5e-21
Identities = 58/247 (23%), Positives = 88/247 (35%), Gaps = 19/247 (7%)
Query: 1 MEEDSATLTI----VKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE--IV 53
M S TL I ++ G+Y N G A S ++ + +P P +V
Sbjct: 68 MRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVV 127
Query: 54 GRSDSSVTLHWRPPQDDGH-SPVTGYVLESHDKDEFMVWNKIETTSTTY--EVTKLTTKH 110
+ + +TL PP G SPV ++ S + Y V +
Sbjct: 128 VQEGAPLTLQCNPP--PGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKA--PVDAEAPVIQEP---LKDSVAGFQSSVTLE 165
+Y A N + V V P P + + LE
Sbjct: 186 DY--SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 166 CVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
C+ SGVPTPDI WYK + +EN + N SE G Y C A+N+ G+
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 226 SCTLLVQ 232
+ ++ V+
Sbjct: 304 TISVRVK 310
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 6e-19
Identities = 40/261 (15%), Positives = 73/261 (27%), Gaps = 59/261 (22%)
Query: 4 DSATLTI--VKFEDKDLGDYTISLSNALGQA---SATTKVTLLSAPGAPDTP-------- 50
+ L V +D DY+ + + +L+ G +
Sbjct: 169 HNGDLYFSNVMLQD-MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQG 227
Query: 51 ---EIVGRSDSSVTL------------HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE 95
+ + L W + G P E+ +K
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWY--KKGGDLPSDKAKFENFNK---------- 275
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
+T ++ + + A N +G+ H V VKA P + K+ +
Sbjct: 276 ----ALRITNVSEEDSGEYFCLASNKMGS--IRHTIS-VRVKAA-----PYWLDEPKNLI 323
Query: 156 AGFQSSVTLECVVSGVPTPDIKWYKDDSLIK----GRNITYENNVARFTVVNCSESSEGR 211
L C +G P P ++W + ++ N + F SS
Sbjct: 324 LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQ--ISSRAV 381
Query: 212 YTCKATNEAGTAETSCTLLVQ 232
Y C +NE G + + V
Sbjct: 382 YQCNTSNEHGYLLANAFVSVL 402
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 7e-17
Identities = 47/330 (14%), Positives = 91/330 (27%), Gaps = 76/330 (23%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366
+ +V + + E +P W + + + ++ R LVI
Sbjct: 19 ITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVID 78
Query: 367 RVTQD-DETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGR------ 414
+ E G A N ++S L W + + +G
Sbjct: 79 FRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQC 138
Query: 415 ---------NITYENNVA-------RFTVV--------NCSES-SEGRYTCKATNEAGTA 449
I + ++ R + N + Y+C A
Sbjct: 139 NPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHT 198
Query: 450 ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIK 509
+ P ++ V + P P + +
Sbjct: 199 IQQKN----PFTLKVLTTRGVAERTPS----------------------FMYPQGTASSQ 232
Query: 510 LVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIY 569
+V L+ L +E G P P+I+W K G ++ + + + I
Sbjct: 233 MV---LRGMDL------LLECIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRIT 280
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+V D+ Y A+N GS +S++V
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVK 310
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-16
Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 49/195 (25%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
YK + +EN + N SE G Y C A+N+ G+
Sbjct: 257 YKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR-------------- 302
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
T ++++++ P K+ L+
Sbjct: 303 ----------------------------HTISVRVKAAPY------WLDEPKNLILAPGE 328
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
++ + G P+P + WM NG + + TI + + Y +
Sbjct: 329 DGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG-DTIIFRDTQISSRAVYQCNTS 387
Query: 585 NAAGSTSLDLSLQVL 599
N G + + VL
Sbjct: 388 NEHGYLLANAFVSVL 402
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 671 QAPLFIER-FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGE 726
Q P ++ ++ V + I + + K +PAPS W RN++ + R G
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+I E G+Y+ A N+ G+A ++ R+ V
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 15/155 (9%)
Query: 622 STLQYTVENLRDKSEY--YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
TL + EY +Q FA N G AL+ L E
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFG---------TALSNRIRLQVSKSPLWPKENL 123
Query: 680 EEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE 738
+ V+E + L P+P I W ++ ++ K+ + L +
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD--LYFSNVMLQ 181
Query: 739 TDAGDYKVVATNELGSAT-HGARVTVDVEKVGRPS 772
DY A T+ V +
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 2e-23
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 34 ATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE-----F 88
++ + P +P + V S+ + + P+ G P+ Y E E
Sbjct: 1 GSSGSS---GPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSK 56
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA-EAPVI 147
K + + L + Y R+AA+N G G S + PV AP +
Sbjct: 57 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS--EFKTQPVREPSAPKL 114
Query: 148 Q 148
+
Sbjct: 115 E 115
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 587 AGSTSLDLS---------LQVLGYIIQQQEKNS---LKFTKVATLDPSTLQYTVENLRDK 634
S++ + + +L Y + + A T+ L+ +
Sbjct: 18 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPE 77
Query: 635 SEYYFQVFAENSVGLGP 651
+ Y ++ A N GLG
Sbjct: 78 TTYAVRLAALNGKGLGE 94
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-23
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENNVA 197
+ P I + +D SV L V+G W K I+ + N +
Sbjct: 4 GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ T++ + G YT N+ G+ + L V K
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 5e-21
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 667 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 725
GS G P I+ E++ V+ ++ L KV + + W + K + S +
Sbjct: 1 GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 60
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
L + A E G Y ++ N+LGS +TV V+K P+
Sbjct: 61 NGSKLTILAARQE-HCGCYTLLVENKLGSRQAQVNLTV-VDKPDPPA 105
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI 559
S PQ + + Q++ ++ K G +WMK +I +S+ ++
Sbjct: 5 SSGPQ------IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 560 DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
E S + I + + YT+ N GS ++L V+
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-08
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLG-DATFQVELS-SPDIQVKWLKKGKEIKESARHIITS 356
S S+ + + + G +++ + I W+K K+I+ES + +
Sbjct: 2 SSGSSGP-QIIQFPEDQKVR--AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 357 RGTQRKLVIKRVTQDDE 373
KL I Q+
Sbjct: 59 SENGSKLTILAARQEHC 75
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP 50
E+ + LTI+ + G YT+ + N LG A +T++ P P
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K I+ + N ++ T++ + G YT N+ G+ +
Sbjct: 42 MKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 4e-23
Identities = 48/237 (20%), Positives = 79/237 (33%), Gaps = 65/237 (27%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P I W KNG ++ S YTV
Sbjct: 32 GDPPPSIVWRKNGKKV-----------------------SGTQSRYTVLEQP-------- 60
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+ ++ V RD + Y + AEN VG +A
Sbjct: 61 ---------------GGISILRI---------EPVRAGRDDAPY--ECVAENGVG---DA 91
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+ L + +P P+ + + ++ T+ + K +P P+I W +N +
Sbjct: 92 VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 151
Query: 714 LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVG 769
S + + DG I + E D G Y+ VA N +G+ + + V V +VG
Sbjct: 152 DMSNPRYSLKDGFLQIENSR----EEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-21
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 7/134 (5%)
Query: 113 MFRVAAVNAIGTGPASHNTRY-VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
+ A N +G S + + A PVI + V +V + C G
Sbjct: 79 PYECVAENGVGD-AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGN 137
Query: 172 PTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
PTP+I W K+ + + + ++ + N E +G+Y C A N GT + T
Sbjct: 138 PTPNIYWIKNQTKVDMSNPRYSLKDGF--LQIENSREEDQGKYECVAENSMGTEHSKATN 195
Query: 230 L-VQGKEIKESARH 242
L V+ + + H
Sbjct: 196 LYVKVRRVGTKHHH 209
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 8e-17
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 10/130 (7%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENI 728
P I + + + V+ G + P PSIVW +N K + + + + G
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 729 ILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSINSIDIDLNHVHYLA 787
IL ++ + D Y+ VA N +G A + A +T+ I
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP------- 117
Query: 788 QSTEVDVTST 797
+ ++V T
Sbjct: 118 GTRVIEVGHT 127
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-16
Identities = 25/175 (14%), Positives = 40/175 (22%), Gaps = 56/175 (32%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVA 197
A P I ++ + C G P P I W K+ + G Y +
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 198 RFTVVNCSESSE--GRYTCKATNEAGTA-ETSCTLLVQ---------------------- 232
+ + Y C A N G A TL +
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 233 ------------------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
++ S G L I+ ++D+
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQ 175
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 6e-13
Identities = 32/213 (15%), Positives = 59/213 (27%), Gaps = 54/213 (25%)
Query: 405 YKDDSLIKGRNITY----ENNVARFTVVNCSESSE--GRYTCKATNEAGTAETRTMWPGL 458
K+ + G Y + + + Y C A N G A
Sbjct: 41 RKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDA--------- 91
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIK-LVDSNLKS 517
+ L I + PA ++ +
Sbjct: 92 --------------------------------VSADATLTIYEGDKTPAGFPVITQGPGT 119
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+ + V + K G P P I W+KN ++ S + ++ + I + D
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN--PRYSLKDG-FLQIENSREEDQG 176
Query: 578 TYTVTATNAAG---STSLDLSLQVLGYIIQQQE 607
Y A N+ G S + +L ++V +
Sbjct: 177 KYECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 8e-05
Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 45/190 (23%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIK--ESARHIITSRGTQRKL 363
E + K + + G A+F P + W K GK++ +S ++ G L
Sbjct: 8 EIIRKPQNQGVRVG-GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 364 VIKRVTQDDETDIGV---LALNV--KSVSK------LKWLDFGSGGWWFESKYKDDSLIK 412
I+ V D +A N +VS + +G +
Sbjct: 67 RIEPVRAGR--DDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 413 GRNITYE---------------NNVA-----RFTVV--------NCSESSEGRYTCKATN 444
G + N + N E +G+Y C A N
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 184
Query: 445 EAGTAETRTM 454
GT ++
Sbjct: 185 SMGTEHSKAT 194
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSR 357
+ + + + +P + W+K ++ S
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVG-HTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD 162
Query: 358 GTQRKLVIKRVTQDDE 373
G L I+ ++D+
Sbjct: 163 GF---LQIENSREEDQ 175
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 6e-23
Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 36 TKVTLLSAPGAPD-TPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI 94
+ + P P E ++S TL W+ P P GY+LE D +
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVY 60
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T V L Y RV A N G P S
Sbjct: 61 VGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS 94
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-08
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
GYI++ + N +F +V TV+ L S Y +V A N G+ P ++
Sbjct: 41 ADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPY--SKT 96
Query: 658 VALATHATLGSPGQAP 673
+ L T S G P
Sbjct: 97 LVLQT-----SEGSGP 107
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 7e-23
Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 25/246 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALG-QASATTKVTLLSAPGAPDTPE-IVGRSDSS 59
++DS+TLTI D G Y ++ G Q+ AT V + + P +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 60 VTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYM 113
+ P T G + F+V + + ++ + E
Sbjct: 118 AVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLS-----NNYLQIRGIKKTDEGT 169
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
+R + + +V P ++ + ++ A SVTL C G P
Sbjct: 170 YRCEGRILARGEINFKDIQVIVNVPPT----VQARQSIVNATANLGQSVTLVCDADGFPE 225
Query: 174 PDIKWYKDDSLI-----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
P + W KD I + ++ + T+ N ++ E Y C A N+AG + S
Sbjct: 226 PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 285
Query: 229 LLVQGK 234
L V K
Sbjct: 286 LKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 2e-21
Identities = 40/270 (14%), Positives = 86/270 (31%), Gaps = 54/270 (20%)
Query: 536 PRPEISWMKNGAEITDSKACRIFI---DEETSTIAIYSVVRADTSTYTVTATNAAGST-S 591
+ISW E RI + D+++ST+ IY+ D Y T G+
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 592 LDLSLQVLGYIIQQQEKNSLKFT----------------------------------KVA 617
+++++ ++ + +F +
Sbjct: 91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE 677
L + LQ D+ Y + E + + + + P
Sbjct: 151 VLSNNYLQIRGIKKTDEGTY--RCEGRILA--RGEINFKDIQVIVNV-------PPTVQA 199
Query: 678 R--FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELK 733
R T ++ L+ P P++ W ++ +P+ + + ++ IF ++ L ++
Sbjct: 200 RQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIR 259
Query: 734 EADSETDAGDYKVVATNELGSATHGARVTV 763
D D +Y +A N+ G + V
Sbjct: 260 NVDKN-DEAEYVCIAENKAGEQDASIHLKV 288
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 3e-14
Identities = 56/341 (16%), Positives = 99/341 (29%), Gaps = 102/341 (29%)
Query: 311 KLPSVTLVP-----HLG-DATF--QVELSSPDIQVKWLKKGKEIKESARHIIT---SRGT 359
++ V +VP +G F QV + D + W E + I+ +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 360 QRKLVIKRVTQDDE--------TDIGVLA---LNVKSVSKLKWLD------FGSGG---- 398
L I DD + G + +NVK KL + + F G
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 399 -------------WWFESKYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCK 441
W + R I NN + ++ EG Y C+
Sbjct: 121 VCDVVSSLPPTIIW-----KHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCE 173
Query: 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501
A + + +
Sbjct: 174 GRILARGEIN----------------------------------------FKDIQVIVNV 193
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFI 559
PP ++ S + + ++ + GFP P +SW K+G I + + +
Sbjct: 194 PPT---VQARQS-IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249
Query: 560 DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+++S + I +V + D + Y A N AG + L+V
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 6e-13
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 12/124 (9%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
G EAT + Q +F + KE ++ V +S P
Sbjct: 81 VTAEDGTQSEATVNVKIF----------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
+I+W + ++ R I N L+++ +TD G Y+ + +
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 763 VDVE 766
V V
Sbjct: 189 VIVN 192
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 41/286 (14%), Positives = 82/286 (28%), Gaps = 79/286 (27%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPT-PDIKWYKDDS-LIKGRN-----ITYENNVA 197
+ S C V+G DI W+ + + + +++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSC-TLLVQ------------------------ 232
T+ N + G Y C T E GT + + +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 233 ---------------GKEI--KESARHIITARGTQRKLVIKRVTQDDETDIGV---LALN 272
G+++ K+ R I+ + L I+ + + DE G
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---LQIRGIKKTDE---GTYRCEGRI 176
Query: 273 VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS- 331
+ P V+ + + T T +
Sbjct: 177 --LARGEINFKDIQVIVN-----------VPPTVQARQSIVNATANLG-QSVTLVCDADG 222
Query: 332 SPDIQVKWLKKGKEI----KESARHIITSRGTQRKLVIKRVTQDDE 373
P+ + W K G+ I ++ +HI + ++ L I+ V ++DE
Sbjct: 223 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE--LTIRNVDKNDE 266
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 680 EEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKR---EIFDGENIILELKEA 735
+ + + + +V I WF N LS ++R D ++ L + A
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 736 DSETDAGDYKVVATNELGSATHG-ARVTV 763
+ DAG YK V T E G+ + V +
Sbjct: 70 N-IDDAGIYKCVVTAEDGTQSEATVNVKI 97
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 9e-23
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 30 GQASATTKVTLLSA------PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESH 83
+ S T+ L P+ EI S+++V LHW D +TGY
Sbjct: 96 NKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYR 155
Query: 84 DKDEFMVWNKIETT---STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
+ K + ++++ L T Y F++ + +A S + +
Sbjct: 156 PSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 1e-21
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET------ 96
+ P P + SD SV L W P++DG P+ + ++ + W
Sbjct: 1 STYPPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 59
Query: 97 --------TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPV 146
S T VT L +H Y FR+ AV + S+ + ++ +
Sbjct: 60 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMP 117
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 586 AAGSTSLDLS---------LQVLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKS 635
T++ L + GY + +S ++ K + + L +
Sbjct: 126 EYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETAT 185
Query: 636 EYYFQVFAENSVGLGP 651
Y F++ + ++
Sbjct: 186 MYEFKLQSFSAASASE 201
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 598 VLGYIIQQQEKNS------------LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645
++ + +Q + K + + +V +L+ + Y F++ A
Sbjct: 32 IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVY 91
Query: 646 SVGLGPEATTELVALATHATLGSPGQAP 673
S E+ T P P
Sbjct: 92 SNNDNKESNTSAKFYLQPGAALDPMPVP 119
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 1e-22
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW---------- 91
+ P P + SD SV L W P++DG P+ + ++ + W
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 92 ----NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
N S T VT L +H Y FR+ AV + S+ +
Sbjct: 60 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF 106
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 598 VLGYIIQQQEKN------------SLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645
++ + +Q + K + + +V +L+ + Y F++ A
Sbjct: 33 IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVY 92
Query: 646 SVGLGP 651
S
Sbjct: 93 SNNDNK 98
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 47/267 (17%), Positives = 87/267 (32%), Gaps = 45/267 (16%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA-DTSTYTVTATNAAG---S 589
G P+P I W NG ++ R + + ++ I + + D TY ATN+ G S
Sbjct: 34 GNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQCIATNSFGTIVS 91
Query: 590 TSLDLSLQVLGYIIQQ-------QEKNSLKFT--------------------------KV 616
L L + + + +
Sbjct: 92 REAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRF 151
Query: 617 ATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676
+ + L D Y N+V + + + + + +
Sbjct: 152 VSQETGNLYIAKVEKSDVGNY--TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV 209
Query: 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 736
+ E ++ T++L +P P+I+W R + ++ +R +G ILE+
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQ 266
Query: 737 SETDAGDYKVVATNELGSATHGARVTV 763
E DAG Y+ VA N G ++T
Sbjct: 267 QE-DAGSYECVAENSRGKNVAKGQLTF 292
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 3e-22
Identities = 66/375 (17%), Positives = 108/375 (28%), Gaps = 114/375 (30%)
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
G Y C ATN GT +R
Sbjct: 75 AGTYQCIATNSFGTI-----------------------------------------VSRE 93
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK---YFGFPRPEISWMKNGAEITD 551
LQ +SV+ + + +W+ N
Sbjct: 94 AKLQFAYLEN-------FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ 146
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-----STSLDLSLQVLGYIIQQQ 606
R F+ +ET + I V ++D YT TN L L+ G + + +
Sbjct: 147 DN--RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
Query: 607 EKNSLKFTK--------------VATLDP------------------------STLQYTV 628
K ++F + A +P L+
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN 264
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688
D Y + AENS G A +L A P +++ + V +
Sbjct: 265 FQQEDAGSY--ECVAENSRG-KNVAKGQLTFYA----------QPNWVQIINDIHVAMEE 311
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748
++ K P P+ W +N PLL+ + +I G I + +D+ G Y+ VA
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPLLTRD-RIQIEQGTLNITIVNLSDA----GMYQCVA 366
Query: 749 TNELGSATHGARVTV 763
N+ G A ++V
Sbjct: 367 ENKHGVIFSSAELSV 381
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 6e-22
Identities = 49/257 (19%), Positives = 84/257 (32%), Gaps = 51/257 (19%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQA---SATTKVTLLSAPGAPDTP--------- 50
+++ L I K E D+G+YT ++N + T + L + +
Sbjct: 154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 51 EIVGRSDSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
+ ++V L WR + DG + ++
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWR--RADGKPIARK--------------ARRHKSN 257
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
E+ + + A N+ G + + A P + + D
Sbjct: 258 GILEIPNFQQEDAGSYECVAENSRGK--NVAKGQ-LTFYAQ-----PNWVQIINDIHVAM 309
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDS-LIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+ SV EC +G P P +W K+ L+ I E T+VN S G Y C A
Sbjct: 310 EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVN--LSDAGMYQCVAE 367
Query: 218 NEAGTAETSCTLLVQGK 234
N+ G +S L V +
Sbjct: 368 NKHGVIFSSAELSVIAE 384
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 6e-22
Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 9/233 (3%)
Query: 7 TLTIVKF-EDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE--IVGRSDSSVTL 62
+L I + +D G Y +N+ G S K+ + R + L
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122
PP G ++ + + + T Y + K+ + N +
Sbjct: 123 LCGPPPHSG-ELSYAWIFNEYPSYQDNRRFVSQETGNLY-IAKVEKSDVGNYTCVVTNTV 180
Query: 123 GTGPASHNTRYVVVK---APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
++++ + E + + + A ++V LEC G P P I W
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ D R + + N + G Y C A N G L
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 2e-18
Identities = 58/397 (14%), Positives = 95/397 (23%), Gaps = 107/397 (26%)
Query: 142 AEAPVIQEPLKDSVAGFQS---SVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYENN 195
PV + + S V L C V G P P I+W + + + + +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQGKE------------------- 235
N G Y C ATN GT + L E
Sbjct: 63 SLLINNPN-KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 236 -----------------------IKESARHIITARGTQRKLVIKRVTQDDETDIGVLALN 272
+++ R + G L I +V + D + + N
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCVVTN 178
Query: 273 -VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS 331
V + L + + + P +
Sbjct: 179 TVTNHKVLGPPTPLILRNDG--------VMGEYEPKIEVQFPETVPAEKGTTVKLECFAL 230
Query: 332 -SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDIGV 378
+P + W + + S G L I Q+D ++
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGI---LEIPNFQQEDAGSYECVAENSRGKNVAK 287
Query: 379 LALNVKS----VSKLKWLDFGSGG-----------------WWFESKYKDDS-LIKGRNI 416
L + V + + W K+ L+ I
Sbjct: 288 GQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW-----LKNGDPLLTRDRI 342
Query: 417 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
E T+VN S G Y C A N+ G +
Sbjct: 343 QIEQGTLNITIVN--LSDAGMYQCVAENKHGVIFSSA 377
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 49/338 (14%), Positives = 82/338 (24%), Gaps = 101/338 (29%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
F ++ S V S ++ W+ + R ++ L
Sbjct: 103 NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLY 160
Query: 365 IKRVTQDDETDIGV-------LALNVKSVSKLKWLDFGSGGWWFESK------------- 404
I +V ++D+G N K + L + G E +
Sbjct: 161 IAKVE---KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 405 ----------------------YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 442
+ D R + + N + G Y C A
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVA 277
Query: 443 TNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502
N G L +
Sbjct: 278 ENSRGKNVA------------------------------------------KGQLTFYAQ 295
Query: 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE 562
P + ++++ E K G P+P W+KNG + RI I++
Sbjct: 296 PN------WVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD--RIQIEQ- 346
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
T+ I V +D Y A N G L V+
Sbjct: 347 -GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/327 (14%), Positives = 88/327 (26%), Gaps = 83/327 (25%)
Query: 332 SPDIQVKWLKKGKEIKESA-RHIITSRGTQRKLVIKRVTQDDETDIGV---LALNV--KS 385
+P ++W G ++ G+ L+I + D G +A N
Sbjct: 35 NPKPHIRWKLNGTDVDIGMDFRYSVVDGS---LLINNPNKTQ--DAGTYQCIATNSFGTI 89
Query: 386 VSKLKWLDFGSGGWWFESKYKDDSLIKGRN---------------ITYENN-------VA 423
VS+ L F + S+ +G+ + N
Sbjct: 90 VSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNR 149
Query: 424 RFTVV--------NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKP 475
RF +S G YTC TN + P +++ +P
Sbjct: 150 RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP----PTPLILRNDGVMGEYEP 205
Query: 476 PMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF 535
+++Q P PA + +K +E G
Sbjct: 206 K--------------------IEVQFPETVPA--EKGTTVK-----------LECFALGN 232
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
P P I W + + KA + + I + + D +Y A N+ G
Sbjct: 233 PVPTILWRRADGKPIARKA---RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ 289
Query: 596 LQVLG--YIIQQQEKNSLKFTKVATLD 620
L +Q + + +
Sbjct: 290 LTFYAQPNWVQIINDIHVAMEESVFWE 316
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 6e-11
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 669 PGQAPLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-D 724
PG P+F++ E+ ++L +VK +P P I W N + R D
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
G +I + DAG Y+ +ATN G+ + A++
Sbjct: 62 GSLLINNPNK---TQDAGTYQCIATNSFGTIVSREAKLQF 98
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-22
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENNVARFT 200
P I + + LE G P P W DS + +++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + G Y K NE G E ++VQ
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-19
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P + + +K T L +P P+ W + +P+ +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
A D+G+YK+ NELG V V
Sbjct: 62 FPSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-16
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
+EV + G P P +W + + + T++I S RAD+ Y + N
Sbjct: 21 NLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE 80
Query: 587 AGSTSLDLSLQV 598
G + V
Sbjct: 81 LGEDEAIFEVIV 92
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 323 DATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
+V+ +PD W + ++ ++ + + + D
Sbjct: 19 THNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADS 70
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIK--GR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
DS + +++ + + G Y K NE G E
Sbjct: 37 TVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEA 86
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVT 39
+ + ++ + D G+Y + + N LG+ A +V
Sbjct: 54 KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 2e-22
Identities = 59/372 (15%), Positives = 98/372 (26%), Gaps = 103/372 (27%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
KD + + R V+N S G Y+C+ ++
Sbjct: 44 VKDGTGLVPSERVLVGP-QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSV-----RVTDA 97
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
D + + P+ + + ++ + P + ++
Sbjct: 98 PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP-------AANTVR-------- 142
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
++ G P P ISW+KNG E
Sbjct: 143 -FRCPAA--GNPTPSISWLKNGREFRGE-------------------------------- 167
Query: 585 NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644
+G I + ++ SL V D+ Y E
Sbjct: 168 ------------HRIGGIKLRHQQWSLVMESV-------------VPSDRGNY--TCVVE 200
Query: 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 704
N G T L L SP + L +T + KV + P I
Sbjct: 201 NKFGS-IRQTYTLDVLER-----SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI 254
Query: 705 VWFR----NNKPLLSSPKKR---------EIFDGENIILELKEADSETDAGDYKVVATNE 751
W + N + D E +L L + DAG+Y +A N
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNS 313
Query: 752 LGSATHGARVTV 763
+G + H A + V
Sbjct: 314 IGFSHHSAWLVV 325
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 5e-20
Identities = 33/245 (13%), Positives = 57/245 (23%), Gaps = 60/245 (24%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P W+K+G + S+ + + + + D+ Y+
Sbjct: 35 GGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLTQRVL--- 87
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
V P +
Sbjct: 88 -----------------------------------------------CHFSVRVTDAPSS 100
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEK----TVKEKGTIRLMAKVKASPAPSIVWFRN 709
+ G AP + V T+R +P PSI W +N
Sbjct: 101 GDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN 160
Query: 710 NKPL-LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768
+ + L ++ D G+Y V N+ GS + V
Sbjct: 161 GREFRGEHRIGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQTYTLDVLERSP 219
Query: 769 GRPSI 773
RP +
Sbjct: 220 HRPIL 224
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 4e-18
Identities = 42/277 (15%), Positives = 75/277 (27%), Gaps = 45/277 (16%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPEIVGRSDSS 59
+ L ++ +D G Y+ + +VT + G + E
Sbjct: 56 VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115
Query: 60 VTL--HWRPPQDD---------GHS-----PVTGY----VLESHDKDEFMVWNKIETTST 99
T +W P+ ++ P G + + EF ++I
Sbjct: 116 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL 175
Query: 100 TYEV-----TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
++ + + N G+ + V + +
Sbjct: 176 RHQQWSLVMESVVPSDRGNYTCVVENKFGS--IRQTYT-LDVLERSPHRPILQAGLPANQ 232
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDS----------------LIKGRNITYENNVAR 198
A S V C V P I+W K L T + +
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
++ N + G YTC A N G + S L+V E
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 1e-15
Identities = 41/236 (17%), Positives = 62/236 (26%), Gaps = 52/236 (22%)
Query: 142 AEAPVIQ-EPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARF 199
AE P + + V G +V L C G P W KD + + R
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP-QRL 63
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVT 259
V+N S G Y+C+ + + A T T
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123
Query: 260 QDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVP 319
+ + D + VP
Sbjct: 124 RPERMD-----------------------------------------------KKLLAVP 136
Query: 320 HLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQDDE 373
F+ + +P + WLK G+E + R I R Q LV++ V D
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 192
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 34/212 (16%), Positives = 62/212 (29%), Gaps = 60/212 (28%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
K+ +G + I + + + S G YTC N+ G+
Sbjct: 158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ--------- 208
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T L + I +Q
Sbjct: 209 ---------------------------------TYTLDVLERSPHRPILQA-GLPANQTA 234
Query: 521 SVKSQWKVEVKYFGFPRPEISWMK----NGAEITDSKACRIFI---------DEETSTIA 567
+ S + K + +P I W+K NG+++ + + D+E ++
Sbjct: 235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+++V D YT A N+ G + L VL
Sbjct: 295 LHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 666 LGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF 723
+G + P +E+ V G + L P VW ++ L P +R +
Sbjct: 1 MGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--VPSERVLV 58
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
+ L++ A E D+G Y H + D G
Sbjct: 59 GPQR--LQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDE 104
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 53/337 (15%), Positives = 78/337 (23%), Gaps = 131/337 (38%)
Query: 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS 183
G V AP + + L A ++V C +G PTP I W K+
Sbjct: 105 DGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAA--NTVRFRCPAAGNPTPSISWLKN-- 160
Query: 184 LIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARH- 242
G+E + R
Sbjct: 161 -------------------------------------------------GREFRGEHRIG 171
Query: 243 IITARGTQRKLVIKRVTQDDETDIGV---LALN----VKSVSKLKWLARWTSDLESTAWF 295
I R Q LV++ V D G + N ++ L L R
Sbjct: 172 GIKLRHQQWSLVMESVVPSDR---GNYTCVVENKFGSIRQTYTLDVLER----------- 217
Query: 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHII 354
S + LP+ D F + S ++WLK +
Sbjct: 218 ------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 271
Query: 355 TSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414
T T K T + + VL
Sbjct: 272 TPYVTVLKTAGANTTDKE---LEVL----------------------------------- 293
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
++ N + G YTC A N G +
Sbjct: 294 -----------SLHNVTFEDAGEYTCLAGNSIGFSHH 319
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 3e-22
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE--T 96
+ S PG P T I + ++ L W PP++ + GY L+ DE N I+
Sbjct: 3 SGSSGPGRP-TMMISTTAMNTALLQWHPPKELP-GELLGYRLQYCRADEAR-PNTIDFGK 59
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+ VT L Y+FR+AA N G G ++ P D P
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF----EKEIRTPEDLSGP 104
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-11
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
+LGY +Q + + + +TV L + Y F++ A+N GLG E E+
Sbjct: 37 LLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95
Query: 658 V 658
Sbjct: 96 R 96
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 4e-22
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 116 VAAVNAIGTGP--------ASHNTRYVVVKAPVD-AEAPVIQEPLKDSVAGFQSSVTLEC 166
++ A G+ P + ++ A P + + D S+ +C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 167 VVSGVPTPDIKWYKDDSLIK-GRNITY---ENNVARFTVVNCSESSEGRYTCKATNEAGT 222
V G P P++ W+KDD+ +K R+ E T+ + +YTCKA N G
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 223 AETSCTLLVQGKE 235
A + LLV+
Sbjct: 124 ATCTAELLVETMG 136
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 4e-19
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 628 VENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
+ + N V L +A P P F + + V E
Sbjct: 4 MSGRKASGSSPTSPINANKVE---NEDAFLEEVAEE----KPHVKPYFTKTILDMEVVEG 56
Query: 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-LELKEADSETDAGDYKV 746
R KV+ P P ++WF+++ P+ S + +D E L + E + D Y
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD-DDAKYTC 115
Query: 747 VATNELGSATHGARVTVDV 765
A N LG AT A + V+
Sbjct: 116 KAVNSLGEATCTAELLVET 134
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 3e-12
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVR 573
+ + S + + K G+P PE+ W K+ + +S+ +I DEE ++ I V
Sbjct: 48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQV 598
D + YT A N+ G + L V
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAELLV 132
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQR-KLV 364
F + + V A F ++ PD +V W K +KES I L
Sbjct: 43 YFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 365 IKRVTQDDE 373
I V DD+
Sbjct: 102 ISEVCGDDD 110
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 405 YKDDSLIK-GRNITY---ENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
+KDD+ +K R+ E T+ + +YTCKA N G A
Sbjct: 76 FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 5e-22
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYEN 194
+ + PVI++ + + L CV +G P P I W KD L+ R EN
Sbjct: 2 SSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
V + GRYTC A+ +G A S + VQ
Sbjct: 62 GV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF 99
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 4e-18
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 667 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G P+ + +TV GT L SP P+I+W ++ + + + +
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL- 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
EN +L+++ A D G Y +A+ G AT A + V
Sbjct: 60 -ENGVLQIRYA-KLGDTGRYTCIASTPSGEATWSAYIEVQE 98
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P I W K+G ++ + RI E + I DT YT A+ +G +
Sbjct: 33 TGSPVPTILWRKDGVLVSTQDS-RIKQLE-NGVLQIRYAKLGDTGRYTCIASTPSGEATW 90
Query: 593 DLSLQVLGY 601
++V +
Sbjct: 91 SAYIEVQEF 99
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 6e-22
Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 39/211 (18%)
Query: 37 KVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD-----EFMVW 91
+ P +P V S+ + + P+ G P+ Y E
Sbjct: 2 PLAQADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 92 NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
K + + L + Y R+AA+N G G S + L
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA-----ASEFKTQPVREPSAPKL 115
Query: 152 KDSVAGFQSSVTLECVVSGVPTPDIKWYKDD---SLIKGRNITYENNVARFTVVNCSESS 208
+ + +S+ + K D S I+ + Y + + S
Sbjct: 116 EGQMGEDGNSIKV------------NLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSG 163
Query: 209 EGRYTCK-------------ATNEAGTAETS 226
K A N+ G ++ +
Sbjct: 164 SDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 194
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 2e-21
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 29 LGQASATTKVTLLSA--PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDK 85
LG+ SA ++ P AP +G +S+ ++ DDG SP+ Y++
Sbjct: 93 LGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALS 151
Query: 86 DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
E+ ++ + S + L EY V A N G A+H
Sbjct: 152 SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAH 195
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 586 AAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
S+ ++L + Y+++ + +S ++ L + +++L +EY
Sbjct: 120 GEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS-EWKPEIRLPSGSDHVMLKSLDWNAEY 178
Query: 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671
V AEN G A T +
Sbjct: 179 EVYVVAENQQGKSKAAHF------VFRTAAAHHH 206
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 598 VLGYIIQQQEKNSLKFTKV---ATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654
+L Y + + + A T+ L+ ++ Y ++ A N GLG +
Sbjct: 39 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 98
Query: 655 TELVA 659
Sbjct: 99 ASEFK 103
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 8e-22
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 118 AVNAIGTGPASHNTRYVVVKAP--VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD 175
+ T ++ I KD A +VTLEC G P PD
Sbjct: 85 VSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144
Query: 176 IKWYKDDS-LIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
I+W K + I+ V + N EG Y C+A N G + + VQ
Sbjct: 145 IRWRKVLEPMPSTAEISTSGAV--LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 3e-16
Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
Query: 642 FAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 701
F + ++ + L + + +F++ + L +P
Sbjct: 84 FVSSPSI-TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV 142
Query: 702 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
P I W + +P+ S+ + +L++ D G Y+ A N G H AR+
Sbjct: 143 PDIRWRKVLEPMPSTAE----ISTSGAVLKIFNI-QLEDEGIYECEAENIRGKDKHQARI 197
Query: 762 TV 763
V
Sbjct: 198 YV 199
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 44/202 (21%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
W ++ K R ++ N N S +G Y+C ++ + T +
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIA--NVEASDKGNYSCFVSSPSITKSVFS----- 96
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
++ + + T+ P I +
Sbjct: 97 KFIPLIPIPERTTKPYPA---------------------DIVVQFK------------DV 123
Query: 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578
+ +E G P P+I W K + + I + + I+++ D
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA----EISTSGAVLKIFNIQLEDEGI 179
Query: 579 YTVTATNAAGSTSLDLSLQVLG 600
Y A N G + V
Sbjct: 180 YECEAENIRGKDKHQARIYVQA 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 3e-07
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 15/97 (15%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPD--IKWYKDDSLIKGRNITYENNVARFTVV 202
P E + + L C D +W + + + RF
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLN-----EFPVFITMDKRRFVSQ 63
Query: 203 --------NCSESSEGRYTCKATNEAGTAETSCTLLV 231
N S +G Y+C ++ + T +
Sbjct: 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIIL 730
P E E VKE + L+ S W N P+ + KR N L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ +D G+Y ++ + + ++
Sbjct: 69 YIANV-EASDKGNYSCFVSSPSITKSVFSKFIP 100
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
W+ N + + R F+ + + I +V +D Y+ ++ + + S+
Sbjct: 38 DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK 97
Query: 596 LQVL 599
L
Sbjct: 98 FIPL 101
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-21
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 45/164 (27%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN--ITYENNVARF 199
+APVI PL+ A + T C V P P+I W ++ LIK + + N
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLV---------------------------- 231
T+++ +S +G Y C A N G A SC L
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 232 ------------QGKEIKESARHIITARGTQRKLVIKRVTQDDE 263
++E++R + G+ L I V ++D
Sbjct: 125 MGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDA 165
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-19
Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 12/143 (8%)
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK 152
I + + + ++ A N +G V P I P
Sbjct: 56 SIRENGQLLTILSVEDSDDGIYCCTANNGVGG-AVESCGALQV------KMKPKITRPPI 108
Query: 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEG 210
+ L C G P P + W K DS ++ R E+ + N + G
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS--LRIHNVQKEDAG 166
Query: 211 RYTCKATNEAGTAETSCTLL-VQ 232
+Y C A N GTA + L V+
Sbjct: 167 QYRCVAKNSLGTAYSKLVKLEVE 189
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 4e-18
Identities = 44/269 (16%), Positives = 75/269 (27%), Gaps = 82/269 (30%)
Query: 498 QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI 557
++ P + + L++ V+ +P+PEISW +N I
Sbjct: 3 KLPKAPV------ITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILI-------- 48
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVA 617
+ + Y++ L V
Sbjct: 49 ---------------KLFDTRYSIRENG-----------------------QLLTILSV- 69
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE 677
D Y A N VG E+ L P
Sbjct: 70 ------------EDSDDGIY--CCTANNGVGGAVESCGALQVKM----------KPKITR 105
Query: 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS 737
+ E L +P PS+ W + + L + + + G I +
Sbjct: 106 PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNV----Q 161
Query: 738 ETDAGDYKVVATNELGSA-THGARVTVDV 765
+ DAG Y+ VA N LG+A + ++ V+V
Sbjct: 162 KEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-16
Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 55/200 (27%)
Query: 405 YKDDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
++ LIK + + N T+++ +S +G Y C A N G A
Sbjct: 42 TRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC--------- 92
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
LQ++ P+ + + ++
Sbjct: 93 --------------------------------GALQVKMKPK------ITRPPINVKIIE 114
Query: 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
+ + G P+P +SW+K + + ++ RI + E+ ++ I++V + D Y
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENS--RIAV-LESGSLRIHNVQKEDAGQYRCV 171
Query: 583 ATNAAG---STSLDLSLQVL 599
A N+ G S + L ++V
Sbjct: 172 AKNSLGTAYSKLVKLEVEVF 191
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 6e-13
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
+AP+ E + M V++ P P I W RN + + I + +L
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ-LL 64
Query: 731 ELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSI 773
+ ++D G Y A N +G A + V + +P I
Sbjct: 65 TILSV-EDSDDGIYCCTANNGVGGAVESCGALQVKM----KPKI 103
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 48/186 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKES-ARHIITSRGTQRKLV 364
+ L +V + ATF + P ++ W + IK R+ I G L
Sbjct: 9 VITTPLETVDALVE-EVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLT 65
Query: 365 IKRVTQDD-------------ETDIGVLALNVKS----VSKLKWLDFGSGG--------- 398
I V D AL VK + G
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTM 125
Query: 399 --------WWFESKYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
W K DS ++ R E+ + N + G+Y C A N GT
Sbjct: 126 GNPKPSVSW-----IKGDSALRENSRIAVLESGS--LRIHNVQKEDAGQYRCVAKNSLGT 178
Query: 449 AETRTM 454
A ++ +
Sbjct: 179 AYSKLV 184
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-21
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTSTTY 101
P P + S S L DDG +P+ Y+++ KD+ W K++
Sbjct: 9 PSPP-SIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHI 66
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE 143
+ L Y ++ A N +G + + K + +
Sbjct: 67 ILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-09
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L YI++ + K+ + + +E+L+ Y Q+ A N +G
Sbjct: 38 ILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSE 91
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 6e-21
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 141 DAEAPVIQEPLK----DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITY 192
+ AP K ++V C G P P ++W K+ K +
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
N + + S +G YTC NE G+ + L V
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-15
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 671 QAPLFIERF----EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDG 725
+AP + V T++ +P P++ W +N K +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
++ L ++ D G+Y V NE GS H + V
Sbjct: 63 QHWSLIMESVVPS-DKGNYTCVVENEYGSINHTYHLDV 99
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 9e-13
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + + ++ + SVV +D YT N GS +
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 593 DLSLQVL 599
L V+
Sbjct: 94 TYHLDVV 100
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K+ K + N + + S +G YTC NE G+
Sbjct: 43 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 9e-05
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 313 PSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESAR-HIITSRGTQRKLVIKRVTQ 370
+ VP F+ +P ++WLK GKE K+ R R L+++ V
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 74
Query: 371 DDE 373
D+
Sbjct: 75 SDK 77
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 6e-21
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
G + + P AP V S V L WRPP + + + + +
Sbjct: 4 GSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPP-AEAKGNIQTFTVFFSREGDNR 62
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
N + S V L + Y FRV A N G G +S
Sbjct: 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS 103
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-11
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ + + + + + T P +LQ TV NL+ ++ Y F+V A N G G
Sbjct: 47 NIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGE 101
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 6e-21
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEP--LKDSV---AGFQSSVTLECVVSGVPTPDIKWY 179
S T V AE P I+ P L+ + G + L G P P + W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVG--EQLNLVVPFQGKPRPQVVWT 59
Query: 180 KDDSLIKGRNITYEN--NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
K + + + F V + S G Y E + + V K
Sbjct: 60 KGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 9e-19
Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD 551
T + I+ + P I+L ++ V Q + V + G PRP++ W K GA +
Sbjct: 8 TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT 67
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
S+ + + + + R+D+ Y ++ + + ++V+
Sbjct: 68 SRV-HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 648 GLGPEATTELVALATHATLGSPGQAPLFI--ERFEEKTVKEKG-TIRLMAKVKASPAPSI 704
G T LA T+ + P + +++ G + L+ + P P +
Sbjct: 2 SSGSSGT-----LAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56
Query: 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
VW + PL +S D + + +++A D+G+Y++ E T R+ V
Sbjct: 57 VWTKGGAPLDTSRVHVRTSDF-DTVFFVRQAARS-DSGEYELSVQIENMKDTATIRIRV- 113
Query: 765 VEKVG 769
VEK G
Sbjct: 114 VEKAG 118
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG 45
+ + + D G+Y +S+ + +AT ++ ++ G
Sbjct: 75 SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-05
Identities = 7/49 (14%), Positives = 11/49 (22%), Gaps = 2/49 (4%)
Query: 405 YKDDSLIKGRNITYEN--NVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K + + + F V + S G Y E
Sbjct: 59 TKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTA 107
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 8e-21
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI---KGRNITYEN 194
+ + P+I + + + L+C +G P P I W K+ R E
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ N S G YTC AT+ +G S L V
Sbjct: 62 GT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 4e-16
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 667 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G P+ ++ +T+ GT L K P P I W + + I
Sbjct: 1 GSSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ- 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
E L++K +D G Y VAT+ G + A + V
Sbjct: 60 -EQGTLQIKNL-RISDTGTYTCVATSSSGETSWSAVLDV 96
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW+K G R I E+ T+ I ++ +DT TYT AT+++G TS
Sbjct: 34 GDPLPVISWLKEGFTFPGRDP-RATIQEQ-GTLQIKNLRISDTGTYTCVATSSSGETSWS 91
Query: 594 LSLQVLG 600
L V
Sbjct: 92 AVLDVTE 98
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 8e-21
Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 31/201 (15%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT---STT 100
P AP I +HW D SP+ Y ++ + W+ + +
Sbjct: 6 PNAPKLTGIT-CQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
V +++ Y FRV A N IG P S ++ + V + P D+V G +
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNP-------DNVVGQGT 116
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITY--ENNVARFTVVNCSESSEGRYTCK--- 215
V+S P P+I+ + +++ + A + N + +
Sbjct: 117 EPN-NLVISWTPMPEIEHN---APNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQP 172
Query: 216 ----------ATNEAGTAETS 226
A N+ G + +
Sbjct: 173 TFVKYLIKVVAINDRGESNVA 193
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 6e-08
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 598 VLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L Y IQ + + P+T V + + Y F+V A N +G P
Sbjct: 35 ILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASP 89
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-08
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 597 QVLGYIIQ-QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
Y + +++ + + D + + +Y +V A N G A
Sbjct: 136 PNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAE 195
Query: 656 ELVA 659
E+V
Sbjct: 196 EVVG 199
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 1e-20
Identities = 31/240 (12%), Positives = 59/240 (24%), Gaps = 15/240 (6%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG--APDTPEIVGRSDSS 59
E +TLT K+ G Y + S T + + E+
Sbjct: 47 ESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQE 106
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAA 118
L D + L + + + + + K +
Sbjct: 107 AVLPCLIT--DPALKDS-VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKT 163
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
+ G S V + E P I+ V + + C +
Sbjct: 164 MVN-GRESTSTGIWLKVNRVHP--EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
Query: 179 YKDDSLIKGRNITYENNVARF------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
K + + + ++ G Y+C A+N+ GT + V
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 5e-14
Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 52/263 (19%)
Query: 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ W S + + ST+ + +T TY T + S + L V
Sbjct: 31 SVEWDGPI-----SPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Query: 599 LG--YIIQQQEKN----------------------SLKFTKV-ATLDPSTLQYTVEN--- 630
+ + S+ + Y
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145
Query: 631 -------LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKT 683
+ D + Y + E+T+ + L + P P +
Sbjct: 146 FIIRKAKVLDSNTY--VCKTMVNGR---ESTSTGIWLKVNRVHPEP---PQIKLEPSKLV 197
Query: 684 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI---FDGENIILELKEADSETD 740
+++ + V + L P + + + L L D + D
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ-D 256
Query: 741 AGDYKVVATNELGSATHGARVTV 763
AG Y VA+N++G+ T V
Sbjct: 257 AGIYSCVASNDVGTRTATMNFQV 279
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 4e-11
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203
APVI+ + V +VTL CV +G ++W S + E+ + T N
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDP--ESPGSTLTTRN 57
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ + G Y C + T+ L V+
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKD 87
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 6e-09
Identities = 23/205 (11%), Positives = 54/205 (26%), Gaps = 51/205 (24%)
Query: 405 YKDDS--LIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
++ +++ + F + Y CK + S
Sbjct: 125 MREGGRQVLRKTVYFFSPW-RGFIIRKAKVLDSNTYVCKTMVNGREST----------ST 173
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
+ L+ +PP QI+ P
Sbjct: 174 GIWLKVNRVHPEPP---------------------QIKLEPS------------KLVRIR 200
Query: 523 KSQWKVEVKYFGFPRPEISWMKNG---AEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579
++ +K G EI + + ++ +++ +V D Y
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260
Query: 580 TVTATNAAGSTSLDLSLQVL--GYI 602
+ A+N G+ + ++ QV+ +
Sbjct: 261 SCVASNDVGTRTATMNFQVVESHHH 285
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 26/189 (13%), Positives = 49/189 (25%), Gaps = 55/189 (29%)
Query: 414 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473
+ E+ + T N + + G Y C +
Sbjct: 42 WTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGS----------------------- 78
Query: 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK-- 531
T +L ++ P NL +Q ++V + +
Sbjct: 79 -------------------TTIHLYVKDPAH-------SWNLLAQEVTVVEGQEAVLPCL 112
Query: 532 -YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA-GS 589
+ +S M+ G K ++ I D++TY S
Sbjct: 113 ITDPALKDSVSLMREGGRQVLRK--TVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRES 170
Query: 590 TSLDLSLQV 598
TS + L+V
Sbjct: 171 TSTGIWLKV 179
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP+ E V+ T+ L S + W P + + L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDP-----ESPGSTLT 54
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ A + + G Y+ + + + + V
Sbjct: 55 TRNATFK-NTGTYRCTELEDPMAGSTTIHLYV 85
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 8e-05
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 5/104 (4%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
A + +E TV E L + + S+ R + I+
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFII 148
Query: 731 ELKEADSETDAGDYKVVATNE-LGSATHGARVTVDVEKVGRPSI 773
D+ Y S + G + V+ P I
Sbjct: 149 ---RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQI 189
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 2e-20
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
G V+V P A + + ++ A +T C SG P P I
Sbjct: 76 GRV-EARGEIDFRDIIVIVNVP---PAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 131
Query: 178 WYKDDSLIK-GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
W+++ LI+ + + TV N S G Y C+ATN+AG E L V
Sbjct: 132 WFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 5e-20
Identities = 41/233 (17%), Positives = 68/233 (29%), Gaps = 71/233 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P P +SW+ + E+T R +
Sbjct: 28 SSPAPAVSWLYHNEEVTTISDNRFAMLAN------------------------------- 56
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
N+L+ + N D+ Y + EA
Sbjct: 57 ---------------NNLQILNI-------------NKSDEGIY--RCEGRV------EA 80
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
E+ + P A ++ T + + + SP P+I WFRN K +
Sbjct: 81 RGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 139
Query: 714 LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+ + I G N L ++ +D G Y ATN+ G A + V V+
Sbjct: 140 EENE--KYILKGSNTELTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 2e-17
Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 52/199 (26%)
Query: 405 YKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
+ + R NN ++N ++S EG Y C+ EA
Sbjct: 37 LYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEGRVEARG------------ 82
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
R + + PP I + +
Sbjct: 83 ----------------------------EIDFRDIIVIVNVPPA---ISMPQ-KSFNATA 110
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYT 580
+ + G P P ISW +NG I +++ + + + + + +++ +D Y
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYV 168
Query: 581 VTATNAAGSTSLDLSLQVL 599
ATN AG LQV
Sbjct: 169 CRATNKAGEDEKQAFLQVF 187
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-16
Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 51/167 (30%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARF 199
+E + + C VS P P + W + + R NN
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--L 59
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ--------------------------- 232
++N ++S EG Y C+ EA ++V
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 233 ----------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
GK I+E+ ++I+ T+ L ++ + D
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDG 164
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 9e-13
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
F E + K+ ++ +V +SPAP++ W +N+ + + R N L+
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQ 60
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+ +++D G Y+ E + V V
Sbjct: 61 ILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVN 94
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 3e-20
Identities = 43/261 (16%), Positives = 74/261 (28%), Gaps = 48/261 (18%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE----IVGRSDS 58
E ATLTI D G + +N G A+ TT + ++ P +
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
Query: 59 SVTLHWR-----PPQD-----DGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTT 108
+V L P+ + + + + +T+L
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRT-----FTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 109 KHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV 168
+ N+ A+ V V P I + + L+CV
Sbjct: 385 TEGGTYTFLVSNSDVN--AAIAF-NVYVNTK-----PEILTYDRLV------NGMLQCVA 430
Query: 169 SGVPTPDIKWYK---------------DDSLIKGRNITYENNVARFTVVNCSESSEGRYT 213
+G P P I WY D + + V + ++ + + G
Sbjct: 431 AGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVE 490
Query: 214 CKATNEAGTAETSCTLLVQGK 234
CKA N+ G +G
Sbjct: 491 CKAYNDVGKTSAYFNFAFKGN 511
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 7e-19
Identities = 38/244 (15%), Positives = 75/244 (30%), Gaps = 20/244 (8%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSV 60
E K E + G YT + + L + V + + G+ D+
Sbjct: 76 ENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDPAKLFLVDRSLYGKEDNDT 132
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS-TTYEVTKLTTKHEYMFRVAAV 119
+ VT Y L+ + + + + + +V
Sbjct: 133 LVRCPLT----DPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV 188
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKW 178
+ G S ++++ P PV+ + T+ C + V + W
Sbjct: 189 DQEGKSVLS--EKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTW 246
Query: 179 YKDDSLIKGRNITYENNVARF--------TVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+++S K + + F T+ + + G + C A N G+A + TL
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLE 306
Query: 231 VQGK 234
V K
Sbjct: 307 VVDK 310
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 2e-18
Identities = 71/550 (12%), Positives = 129/550 (23%), Gaps = 158/550 (28%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVAR 198
P + P I D + + L C G +KW + + T EN
Sbjct: 31 PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFE-----ILDETNENKQNE 81
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITA------------ 246
+ ++ G+YTC + S + V+ +
Sbjct: 82 WITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL 138
Query: 247 ----------RGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL---ARWTSDLESTA 293
+G Q K + K + + G++ +VK L +
Sbjct: 139 TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198
Query: 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPD--IQVKWLKKGKEIKESAR 351
F + AV +S + L+ + T + + W ++ + K +
Sbjct: 199 KFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK 258
Query: 352 HIITSRGTQRK-----LVIKRVTQDDE------------TDIGVLALNVK---------S 385
+ G L I +D + L V
Sbjct: 259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPM 318
Query: 386 VSKLKWLDFG---------SGG------WWFESKYKDDSLIKGRNITYENNVARFTVV-- 428
++ +++ G W + + Y + +
Sbjct: 319 INTTVFVNDGENVDLIVEYEAFPKPEHQQW----IYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 429 ------NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQ 482
+ G YT +N A
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAI------------------------------- 403
Query: 483 KLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542
N+ + + P+ I D + L + GFP P I W
Sbjct: 404 -----------AFNVYVNTKPE---ILTYDRL-VNGMLQCVA--------AGFPEPTIDW 440
Query: 543 MKNGAEITDSKACRIFIDEET------------STIAIYSVVRADTSTYTVTATNAAGST 590
A + +D +T +I S T A N G T
Sbjct: 441 YFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT 500
Query: 591 SLDLSLQVLG 600
S + G
Sbjct: 501 SAYFNFAFKG 510
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 85.1 bits (210), Expect = 2e-17
Identities = 51/458 (11%), Positives = 97/458 (21%), Gaps = 122/458 (26%)
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA---------------ETRTMWPG 457
+ T EN + ++ G+YTC + + +
Sbjct: 70 ILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKED 129
Query: 458 LPLSI----------VVSLRKADTRVKPPMKRVLQKLAVPF------------SYKTRTT 495
+ SL+ + P R +
Sbjct: 130 NDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVD 189
Query: 496 N---------LQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKN 545
++ P A+ +V + S L ++ V +W +
Sbjct: 190 QEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE 249
Query: 546 GAEITDSKACRI-----FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL- 599
++ + F E +T+ I S D+ + A N GS ++ +L+V+
Sbjct: 250 NSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD 309
Query: 600 -GYIIQQQEKNSLKFTKV-------------------------ATLDPSTLQYTVENLRD 633
G+I N+ F T Y
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369
Query: 634 KSEY---------------YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER 678
Y + NS + P +
Sbjct: 370 NIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA-AIAFNVYVNT----------KPEIL-- 416
Query: 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS- 737
T L P P+I W+ D + +
Sbjct: 417 ----TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 738 ----------ETDAGDYKVVATNELGSATHGARVTVDV 765
G + A N++G +
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 53/540 (9%), Positives = 117/540 (21%), Gaps = 150/540 (27%)
Query: 17 DLGDYT----ISLSNALGQASATTKVTLLSAPG-APDTPEIVGRSDSSVTLHWRPPQDDG 71
D+ + L G + + S P P +++ R + L
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCT-----D 60
Query: 72 HSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
V + N E + K + + + + +
Sbjct: 61 PGFVKWT------FEILDETN--ENKQNEWITEKAEATNTGKYTCTNKHGLSN------S 106
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIKGRN 189
YV V+ P + + + + C ++ + L K
Sbjct: 107 IYVFVRDP-----AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161
Query: 190 ITYENNVARFTVVNCSES-SEGRYTCKATNEAGTAETSCTLLVQ---------------- 232
+ + + + C E G + S +++
Sbjct: 162 FIPDPKAG-IMIKSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAFKAVPVVSVSKA 219
Query: 233 ------------------------------GKEIKESARHIITARGTQRK-----LVIKR 257
+ K ++ G L I
Sbjct: 220 SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISS 279
Query: 258 VTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPS 314
+D GV A N + T + + + +
Sbjct: 280 ARVNDS---GVFMCYANNTFGSA------------NVTTTLEVVDK---GFINIFPMINT 321
Query: 315 VTLVPHLGDATFQVELSS--PDIQVKWLKKGKEIKESARHIITSRGTQR-----KLVIKR 367
V + VE + +W+ + + S +L + R
Sbjct: 322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR 381
Query: 368 VTQDDE------------TDIGVLALNVKSVSKLKWLDFGSGG---------------WW 400
+ + + V + ++ D G W+
Sbjct: 382 LKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWY 441
Query: 401 FESKYK----------DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
F + D + + V + ++ + + G CKA N+ G
Sbjct: 442 FCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTS 501
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 9e-14
Identities = 57/479 (11%), Positives = 118/479 (24%), Gaps = 165/479 (34%)
Query: 209 EGRYTCK----ATNEAGTAETSCTLLVQGK-EIKESARHIITARGT-------------- 249
+ C + G+++ S + I +I G
Sbjct: 7 AWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKW 66
Query: 250 ------------QRKLVIKRVTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTAW 294
Q + + ++ + G + S + + D
Sbjct: 67 TFEILDETNENKQNEWITEKAEATNT---GKYTCTNKHGLS----NSIYVFVRDPAK--- 116
Query: 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK--GKEIKESARH 352
L + D + L+ P++ LK GK + + R
Sbjct: 117 --------------LFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF 162
Query: 353 IITSRGTQRKLVIKRVTQDDE------------TDIGVLALNVKSVSKLKWLDF------ 394
I + ++IK V + + +K K +
Sbjct: 163 IPDPKAG---IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA 219
Query: 395 ------G---------SGG------WWFESKYKDDSLIKGRNITYENNVARF-------- 425
G W +++S K + + F
Sbjct: 220 SYLLREGEEFTVTCTIKDVSSSVYSTW----KRENSQTKLQEKYNSWHHGDFNYERQATL 275
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLA 485
T+ + + G + C A N G+A
Sbjct: 276 TISSARVNDSGVFMCYANNTFGSAN----------------------------------- 300
Query: 486 VPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMK 544
TT L++ I + + ++ + V+Y FP+PE W+
Sbjct: 301 -------VTTTLEVVDKGF---INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY 350
Query: 545 NGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
TD + E S + + + + TYT +N+ + ++ ++ V
Sbjct: 351 MNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 5e-12
Identities = 34/273 (12%), Positives = 64/273 (23%), Gaps = 56/273 (20%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
+ W + T+ + +T YT T + + S+ + ++
Sbjct: 62 GFVKWTFEILDETNENKQ--------NEWITEKAEATNTGKYTCTNKHGLSN-SIYVFVR 112
Query: 598 VLGYIIQQQE---------------------KNSLKFTKVATLDPSTLQYTVEN------ 630
+ N P L++ +
Sbjct: 113 DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 631 ---LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK 687
R + +E L + P+ ++E
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGK---SVLSEKFILKVRPAFKAV---PVVSVSKASYLLREG 226
Query: 688 GTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETDA 741
+ +K + W R N K G+ L + A D+
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DS 285
Query: 742 GDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
G + A N GSA + V V + IN
Sbjct: 286 GVFMCYANNTFGSANVTTTLEV----VDKGFIN 314
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-20
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
+S + + PG S +S+T+ W P + Y L +K
Sbjct: 3 SGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTD 61
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++ +S +Y + L EY FRV A N G G ++
Sbjct: 62 K-EQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTP 101
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-09
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 581 VTATNAAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632
+ A AA TS+ ++ ++ Y + EK + K V S+ YT+ L+
Sbjct: 24 LRAY-AASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDV---SSHSYTINGLK 79
Query: 633 DKSEYYFQVFAENSVGLGP 651
+EY F+V A N G G
Sbjct: 80 KYTEYSFRVVAYNKHGPGV 98
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 4e-20
Identities = 41/271 (15%), Positives = 66/271 (24%), Gaps = 33/271 (12%)
Query: 7 TLTIVKFEDKDL------GDYTISLSNALGQA-SATTKVTLLSAPGAPDTPE-IVGRSDS 58
L F +D Y N G S V + A +
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGN 119
Query: 59 SVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY-----------EVTKLT 107
S + P DE + Y EV
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWH----TDEEENYFPGAEYDGKYLVLPSGELHIREVGPED 175
Query: 108 TKHEYMFRVAAVNAIG-TGPASHNTRYVVVKAPVDAEAPVIQEPL-KDSVAGFQSSVTLE 165
Y + + + S +V+ P+ + AP + K +++L
Sbjct: 176 GYKSY--QCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 166 CVVSGVPTPDIKWYKDDS-LIKGRNITYENNVARF----TVVNCSESSEGRYTCKATNEA 220
C G P P +WYK + + + + V + + + G+Y C N
Sbjct: 234 CPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 293
Query: 221 GTAETSCTLLVQGK-EIKESARHIITARGTQ 250
G L V K G
Sbjct: 294 GGESVETVLTVTAPLSAKIDPPTQTVDFGRP 324
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 4e-19
Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 52/253 (20%)
Query: 4 DSATLTI--VKFEDKDLGDYTISLSNALGQA---SATTKVTLLSAPGAPDTPEIVGRS-- 56
S L I V ED Y + L SAT +++ P + P
Sbjct: 162 PSGELHIREVGPED-GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220
Query: 57 ------DSSVTLH------------WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
+++L W + + V+ + ++++ S
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWY--KFIEGTTRKQAVVLN---------DRVKQVS 269
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
T + + + N++G S T + V AP + F
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGG--ESVETV-LTVTAP-----LSAKIDPPTQTVDF 321
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
C +G P + W KD G+ I + +V R + + +G Y C N
Sbjct: 322 GRPAVFTCQYTGNPIKTVSWMKD-----GKAIGHSESVLRIE--SVKKEDKGMYQCFVRN 374
Query: 219 EAGTAETSCTLLV 231
+ +AE S L +
Sbjct: 375 DRESAEASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 50/277 (18%), Positives = 77/277 (27%), Gaps = 49/277 (17%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS------TYTVTATNAA 587
G P PEI W+++ I + + D Y A N
Sbjct: 30 GNPMPEIIWIRSDGTAVGDVPGLRQISSD-GKLVFPPFRAEDYRQEVHAQVYACLARNQF 88
Query: 588 G---STSLDLSLQVLGYIIQQQEK------NSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
G S + + V Y K NS + + V D+ E Y
Sbjct: 89 GSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 148
Query: 639 FQ--------------------VFAENSVG---------LGPEATTELVALATHATLGSP 669
F V E+ L E T
Sbjct: 149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208
Query: 670 GQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR--EIFDGE 726
AP ++ + TI L+ + PAPS W++ + +
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ L +K+A E D+G Y V N +G + +TV
Sbjct: 269 SGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETVLTV 304
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 5e-12
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
NSVG G T L A +TV + +P
Sbjct: 289 VNNSVG-GESVETVLTVTA----------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 337
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
++ W ++ K + S + I +K+ D G Y+ N+ SA A +
Sbjct: 338 TVSWMKDGKAIGHS-------ESVLRIESVKKEDK----GMYQCFVRNDRESAEASAELK 386
Query: 763 V 763
+
Sbjct: 387 L 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 8e-12
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 143 EAPVI-QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD----SLIKGRNITYENNVA 197
+ PV +EP + +EC SG P P+I W + D + G +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 198 RFTVVNCS----ESSEGRYTCKATNEAGTAETSCTLLV 231
F E Y C A N+ G+ + +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 99
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 68/410 (16%), Positives = 116/410 (28%), Gaps = 85/410 (20%)
Query: 308 FLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEI--KESARHIITSRGTQRKLV 364
FL + + + A + + S +P ++ W++ I+S G LV
Sbjct: 6 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LV 62
Query: 365 IKRVTQDD---ETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNI 416
+D E V LA N +S+ + + +E+ + +I+G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY-YEADVNKEHVIRG--- 118
Query: 417 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPP 476
N A C + W + D +
Sbjct: 119 ----NSAVIK-------------CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161
Query: 477 MKRVLQKLAV---------------PFSYKTRTTN----LQIQSPPQQPAIKLVDSNLKS 517
L V + +TR + L I P A + K
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221
Query: 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI--FIDEETSTIAIYSVVRAD 575
L V + GFP P W K T +A + + + + T+ I V D
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 281
Query: 576 TSTYTVTATNAAGSTSLDLSLQVLG--YIIQQ------QEKNSLKFT------------- 614
+ Y N+ G S++ L V FT
Sbjct: 282 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Query: 615 ----KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL-VA 659
K S L +E+++ + + +Q F N EA+ EL +
Sbjct: 342 MKDGKAIGHSESVL--RIESVKKEDKGMYQCFVRNDRESA-EASAELKLG 388
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 671 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNK-PLLSSPKKREIF-DGEN 727
+ P+F++ + + K +P P I+W R++ + P R+I DG+
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 728 IILELKEADS--ETDAGDYKVVATNELGSA-THGARVTVDV 765
+ + D E A Y +A N+ GS + V V
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 102
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 6e-20
Identities = 34/242 (14%), Positives = 66/242 (27%), Gaps = 15/242 (6%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGA--PDTPEIVGRSDSS 59
+ S+ L+ ++ G Y + SA + + E+V D
Sbjct: 47 DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQD 106
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTST-TYEVTKLTTKHEYMFRVAA 118
L G L M + + + + ++ +A
Sbjct: 107 ALLPCLLT---DPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSA 163
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW 178
+ G S + R V K P + + V + + C S V +
Sbjct: 164 LMG-GRKVMSISIRLKVQKVI--PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220
Query: 179 YKDDSLIKGRNITYENNVARF------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ ++ + + R+ + G Y+C A+N G TS V
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Query: 233 GK 234
Sbjct: 281 ES 282
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 2e-13
Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 52/263 (19%)
Query: 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ W S ++ D +S ++ + +T TY T S + L V
Sbjct: 31 SVEWDGP-----PSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Query: 599 L----------------------------GYIIQ------QQEKNSLKFTKVATLDPS-T 623
+++ + L + P
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 624 LQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKT 683
+Y Q A + + + L + P P E
Sbjct: 146 FTIHRAKFIQSQDY--QCSALMGGR---KVMSISIRLKVQKVIPGP---PALTLVPAELV 197
Query: 684 VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETD 740
+++ + V+ ++N L+ P++ + + + L L + D +
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ-H 256
Query: 741 AGDYKVVATNELGSATHGARVTV 763
AG+Y VA+N G + V
Sbjct: 257 AGNYSCVASNVQGKHSTSMFFRV 279
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 2e-11
Identities = 33/279 (11%), Positives = 67/279 (24%), Gaps = 76/279 (27%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNC 204
PVI+ + + V ++VTL CV +G ++W S + + + + + N
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPS--PHWTLYSDGSSSILSTNNA 58
Query: 205 SESSEGRYTCKATNEAGTAETSCTLLVQ-------------------------------- 232
+ + G Y C + + L V+
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 233 ----------GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL---ALNVKSVSKL 279
G+ + + + I R AL
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQS---QDYQCSALMGGRKVM- 171
Query: 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGD-ATFQVELSSPD--IQ 336
S + + + + G+ A SS D
Sbjct: 172 -----------SISIRLKVQKVIPGPPALTLVPAELVRI--RGEAAQIVCSASSVDVNFD 218
Query: 337 VKWLKKGKEIKESARHIITSRGTQRK--LVIKRVTQDDE 373
V ++ + + Q+ L + +V
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHA 257
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 22/216 (10%), Positives = 51/216 (23%), Gaps = 51/216 (23%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
+ + L++ N ++ FT+ Y C A
Sbjct: 123 SLV--RVRGRPLMRHTNYSFSPW-HGFTIHRAKFIQSQDYQCSALMGGRKV--------- 170
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
+SI + L+ PP + P
Sbjct: 171 -MSISIRLKVQKVIPGPP---------------------ALTLVPA------------EL 196
Query: 519 RLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFID--EETSTIAIYSVVRAD 575
++ ++ N ++ + + ++ T+ + V
Sbjct: 197 VRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQH 256
Query: 576 TSTYTVTATNAAGSTSLDLSLQVL--GYIIQQQEKN 609
Y+ A+N G S + +V+ +
Sbjct: 257 AGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHHH 292
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P+ E VK T+ L S + W SP DG + IL
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP-----SPHWTLYSDGSSSILST 55
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
A + + G Y+ + + + V
Sbjct: 56 NNATFQ-NTGTYRCTEPGDPLGGSAAIHLYV 85
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 5/104 (4%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
A + +E V E L + + R L
Sbjct: 89 ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--F 146
Query: 731 ELKEADSETDAGDYKVVATNE-LGSATHGARVTVDVEKVGRPSI 773
+ A + DY+ A + R+ V G P++
Sbjct: 147 TIHRAKFI-QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPAL 189
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 85.1 bits (210), Expect = 9e-20
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL 184
G + H+ + P + + SV L C G P P+I+W+ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQG 61
Query: 185 IKGRN----------------ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
+++ + ++ E G Y C+A+N+ +
Sbjct: 62 PNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRA 121
Query: 229 LLVQG 233
V+
Sbjct: 122 PRVKW 126
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-11
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 14/107 (13%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK---------- 719
F++ + G++ L + SP P I W+ + +
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 720 ---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + E D G Y+ A+N+ V
Sbjct: 79 HIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHLTRAPRV 124
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-08
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 534 GFPRPEISWMKNGAEITDSKACR-------------IFIDEETSTIAIYSVVRADTSTYT 580
G P PEI W G D + + STI+I ++V DT TY
Sbjct: 47 GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYE 106
Query: 581 VTATNAAGSTSLDLSLQV 598
A+N L + +V
Sbjct: 107 CRASNDPDRNHLTRAPRV 124
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-19
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
+S +V T PG P + S++S+ L W PP+ D + Y L D +
Sbjct: 3 SGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHG 59
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
T+Y + L Y FR+AA + G G ++
Sbjct: 60 EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 100
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-08
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 586 AAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
TS+ LS + Y + ++ + ++ Y ++ L+ S YYF
Sbjct: 28 PESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITI--EPGTSYRLQGLKPNSLYYF 85
Query: 640 QVFAENSVGLGP 651
++ A + GLG
Sbjct: 86 RLAARSPQGLGA 97
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 2e-19
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 7/147 (4%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
A+ +V +D G Y + G S ++ + P P++ + +
Sbjct: 220 RFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLW 279
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVN 120
+ +G P+ +E WN + ST+Y++ L EY V
Sbjct: 280 IQLNANSINGDGPIVAREVEYCTASG--SWNDRQPVDSTSYKIGHLDPDTEYEISVLLTR 337
Query: 121 A--IGTGPASHNTRYVVVKAPVDAEAP 145
GTG K P
Sbjct: 338 PGEGGTGSPG-PALRTRTKCADPMRGP 363
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 4e-11
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 7/129 (5%)
Query: 33 SATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLE------SHDK 85
+ T+ P E+V +T+ W P + + ++
Sbjct: 349 ALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQ 408
Query: 86 DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
V E + + +T L+ ++ +N G + P
Sbjct: 409 VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTE 468
Query: 146 VIQEPLKDS 154
IQ +
Sbjct: 469 SIQGSTFEE 477
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 1e-10
Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLE------- 81
++ T PGA T I G + + L WR P +T Y +
Sbjct: 448 KESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTY-GVITLYEITYKAVSSF 506
Query: 82 --SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
D T + L Y F + A A G GP +
Sbjct: 507 DPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA 555
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-08
Identities = 22/217 (10%), Positives = 51/217 (23%), Gaps = 46/217 (21%)
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC 555
+++ P + + ++ G G ++ D+
Sbjct: 154 EVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLK 211
Query: 556 RIFIDEETSTIA---IYSVVRADTSTYTVTATNAAG------------------------ 588
I + IA + + + D Y G
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA 271
Query: 589 ---STSLDLSLQ---------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
+T L + L ++ ++ + + + Y + +L +E
Sbjct: 272 SVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQ---PVDSTSYKIGHLDPDTE 328
Query: 637 YYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
Y V G + + T P + P
Sbjct: 329 YEISVLLTRPGEGGTGSPGPALRTRTKCA--DPMRGP 363
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 2e-08
Identities = 24/173 (13%), Positives = 42/173 (24%), Gaps = 47/173 (27%)
Query: 30 GQASATTKVTLLSAPGAP--DTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE 87
G + T +SAP P + + ++D++VT+ +P +PV+ Y + ++
Sbjct: 552 GPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHS-RGAPVSVYQIVVEEERP 610
Query: 88 FMVWNKIET-------------------------------------------TSTTYEVT 104
E T Y T
Sbjct: 611 RRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNT 670
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
L Y A + + V K + E D
Sbjct: 671 PLLPYKSYRIYFQAASRANGETKIDCVQ-VATKGAATPKPVPEPEKQTDHTVK 722
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 2e-06
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 13/153 (8%)
Query: 90 VWNKIETTSTTYEVTKLT----TKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+WN + T+ +L + Y + + G + + V V P
Sbjct: 109 IWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAID--EVKVLGHPCTRTP 166
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK------DDSLIKGRNITYENNVARF 199
V T +C G + + D L + + + +A F
Sbjct: 167 HFLRIQNVEVNA-GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASF 225
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
VVN ++ G+Y C E G ++ LV
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 597 QVLGYIIQQQEKNSL-------KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649
+ Y I + +S + + + + L + Y F + A + G
Sbjct: 492 VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGF 551
Query: 650 GPEATTE 656
GP AT +
Sbjct: 552 GPPATNQ 558
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 3e-04
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 7/79 (8%)
Query: 599 LGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658
+ Y Q + ++ + S Q+T+ NL + ++ N G
Sbjct: 397 VHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQEL--- 453
Query: 659 ALATHATL-GSPGQAPLFI 676
T PG P
Sbjct: 454 ---IVQTDEDLPGAVPTES 469
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 10/134 (7%)
Query: 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691
+ + F+V G +A+ LG P R + V
Sbjct: 132 PNFYQVIFEVITSGHQGY--------LAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFAT 183
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSP-KKREIFDGENIILELKEAD-SETDAGDYKVVAT 749
+ + +P K+ ++ I + ++ DAG Y+ +
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Query: 750 NELGSATHGARVTV 763
E G V
Sbjct: 244 TEGGVGISNYAELV 257
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 3e-19
Identities = 41/278 (14%), Positives = 71/278 (25%), Gaps = 81/278 (29%)
Query: 489 SYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548
+ ++ + + + N +S+ + K+ + G P + W K E
Sbjct: 5 HHHHHHSSGLVPRGSK------ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE 58
Query: 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEK 608
I + TS + +V D Y N
Sbjct: 59 IPNG---------NTSELIFNAVHVKDAGFYVCRVNNNFTF------------------- 90
Query: 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668
+F++ + L V PE+ V G
Sbjct: 91 ---EFSQWSQL--------------------------DVCDIPESFQRSVD-------GV 114
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
+ + T+ L SP P WF+N PL KK
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------- 165
Query: 729 ILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765
+ + D E G Y N+ S + + +D
Sbjct: 166 LYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDE 202
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-17
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 16/147 (10%)
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE---------AP 145
++ + K + N S ++ V P +
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTF-EFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCS 205
I S++ L+CV G P P +W+K+ +T+E + V
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN-----ELPLTHETK-KLYMVPYVD 173
Query: 206 ESSEGRYTCKATNEAGTAETSCTLLVQ 232
+G Y C N+ + ++ ++
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIII 200
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-17
Identities = 28/250 (11%), Positives = 57/250 (22%), Gaps = 75/250 (30%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL 184
G + H+ + P I + V L C +G P +W+K +
Sbjct: 2 GSSHHHHHHSSGLVP---RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE 58
Query: 185 IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHII 244
I N + G Y C+ N E + ++
Sbjct: 59 IP------NGNTSELIFNAVHVKDAGFYVCRVNNNF------------TFEFSQWSQ--- 97
Query: 245 TARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTP 304
L+V + F +
Sbjct: 98 --------------------------LDV---------------CDIPESFQRSVDGVSE 116
Query: 305 AVEFLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
+ + P+ + Q + SP +W K + + +
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL---------Y 167
Query: 364 VIKRVTQDDE 373
++ V + +
Sbjct: 168 MVPYVDLEHQ 177
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-13
Identities = 29/203 (14%), Positives = 50/203 (24%), Gaps = 50/203 (24%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+K + I N + G Y C+ N ++
Sbjct: 53 FKMNKEIP------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQW----------- 95
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+ V + + + + LQI P SQ+L S
Sbjct: 96 ----SQLDVCDIPESFQRSVD-----GVSESKLQICVEPT------------SQKLMPGS 134
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
++ G P P W KN +T + V TY
Sbjct: 135 TLVLQCVAVGSPIPHYQWFKNELPLTHE---------TKKLYMVPYVDLEHQGTYWCHVY 185
Query: 585 NAAG---STSLDLSLQVLGYIIQ 604
N S +++ + L +
Sbjct: 186 NDRDSQDSKKVEIIIDELNNLGH 208
|
| >2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 5e-19
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 32 ASATTKVTLLSAPGAPD-TPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--------- 81
S+ + L+AP P E+ S ++T+HW ++ Y L+
Sbjct: 4 GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60
Query: 82 -SHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ W + Y V L + Y+F V A+N G+ +
Sbjct: 61 FISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE 109
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 90.2 bits (223), Expect = 5e-19
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 20 DYTISLS--NALGQASATTKV---TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSP 74
+YT ++ N + + ++ P + GRS +S+++ W P S
Sbjct: 412 NYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQ-SR 470
Query: 75 VTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V Y + K + +N T + + L Y+ +V A+ G G S
Sbjct: 471 VWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGS 524
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 7e-17
Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 18/160 (11%)
Query: 17 DLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
G + +A + P + + V L W PPQD G
Sbjct: 306 PEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDI 365
Query: 77 GYVLE----------SHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNAIGT 124
Y + + + +++ T T+ V+ L Y F V A N +
Sbjct: 366 VYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSG 425
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTL 164
S R + + + L+ +S+++
Sbjct: 426 LVTS---RSFRTASVSINQTEPPKVRLEGR---STTSLSV 459
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 585 NAAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
+TSL +S V Y + ++K V T+++L +
Sbjct: 450 EGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNV--RRTEGFSVTLDDLAPDTT 507
Query: 637 YYFQVFAENSVGLGP 651
Y QV A G G
Sbjct: 508 YLVQVQALTQEGQGA 522
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-19
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYEN 194
+ + QE LKD + TL CV+S V P +KW +++++ + ++ E
Sbjct: 2 SSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEG 60
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
+ V N GRY+C G TS TL V
Sbjct: 61 AMLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSG 99
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 6e-15
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S S+ V F L + V G AT + LSS VKW ++ ++ + G
Sbjct: 3 SGSSGPVRFQEALKDLE-VLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGA 61
Query: 360 QRKLVIKRVTQDDE 373
+LV++ + D
Sbjct: 62 MLELVVRNLRPQDS 75
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 8e-15
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G + F E ++ V E G L + + AP + W N L K +
Sbjct: 1 GSSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSAT 756
G + L ++ + D+G Y ++ SAT
Sbjct: 60 GAMLELVVRNLRPQ-DSGRYSCSFGDQTTSAT 90
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
LK + + P + W + + + + + ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 575 DTSTYTVTATNAAGSTSL 592
D+ Y+ + + S +L
Sbjct: 74 DSGRYSCSFGDQTTSATL 91
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 6e-19
Identities = 39/225 (17%), Positives = 69/225 (30%), Gaps = 39/225 (17%)
Query: 34 ATTKVTLLSAPGAPDTPEIVGRSDSSVTLH------------WRPPQDDGHSPVTGYVLE 81
A VT+ S+ PE+ ++ V L W+ D G +
Sbjct: 1 AMGSVTVHSSE-----PEVRIPENNPVKLSCAYSGFSSPRVEWK--FDQGDTTRLVCYNN 53
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+++ T +T + + G + ++V P
Sbjct: 54 KITASY---EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK-LIVLVP-- 107
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIK--GRNITYENNVAR 198
P S A + L C G P + W+KD ++ ++ +N +
Sbjct: 108 ---PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 199 F--------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
S S G Y+C+A N GT TS + ++ E
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-14
Identities = 36/247 (14%), Positives = 61/247 (24%), Gaps = 70/247 (28%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
K+ Y GF P + W + + T + N
Sbjct: 23 KLSCAYSGFSSPRVEWKFDQGDTT-----------------------------RLVCYNN 53
Query: 587 AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646
+ S + + L + F V D Y
Sbjct: 54 KITASYEDRVTFLP--------TGITFKSV-------------TREDTGTY--TCMVSEE 90
Query: 647 VGLGP-EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSI 704
G E +L+ L P + L SP
Sbjct: 91 GGNSYGEVKVKLIVLV----------PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY 140
Query: 705 VWFRNNKPLLSSPKKREIFDGENIILELKEAD------SETDAGDYKVVATNELGSATHG 758
WF++ + ++PK F + +L + S +D G+Y A N G+
Sbjct: 141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS 200
Query: 759 ARVTVDV 765
V ++
Sbjct: 201 NAVRMEA 207
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 5e-10
Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 54/181 (29%)
Query: 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLA 485
T + + G YTC + E G +
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNS------------------------------------ 94
Query: 486 VPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVE-VKYFGFPRPEISWMK 544
Y L + PP +P + ++ ++ + + G P E +W K
Sbjct: 95 ----YGEVKVKLIVLVPPSKP------TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK 144
Query: 545 NGAEITDS-------KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
+G + + ++ T + + +DT Y+ A N G+ +++
Sbjct: 145 DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Query: 598 V 598
+
Sbjct: 205 M 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 4e-08
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG------ 725
+ E + E ++L +P + W +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 726 --ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLN 781
+ K + D G Y + + E G++ +V + V PS +++I +
Sbjct: 64 TFLPTGITFKSV-TREDTGTYTCMVSEEGGNSYGEVKVKLIVL--VPPSKPTVNIPSS 118
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 1e-18
Identities = 42/284 (14%), Positives = 76/284 (26%), Gaps = 59/284 (20%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
PR ++W KN + T + + + + ++ D+ TY T NA+ +
Sbjct: 51 VSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS 110
Query: 594 LSLQVL----GYIIQQQEKNSLKFTKVATLDPSTLQYTV--------------ENLRDKS 635
+ L+V ++ L + L L L +
Sbjct: 111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN 170
Query: 636 EYYFQV---------------------FAENSVGLGPEATTELVALATHATLGSPGQAPL 674
E + V + T + L P+
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE--TIPV 228
Query: 675 FIERFEEKTVKEKGTIRLMAKVKA---SPAPSIVWFRNNKPLLSSPKKREIF-------- 723
I + + + + KV +P +++W+ N + S
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 724 --DGENI---ILELKEADSETDAG-DYKVVATNELGSATHGARV 761
+ EN L E D D+K V N L T V
Sbjct: 289 SENNENYIEVPLIFDPVTRE-DLHMDFKCVVHNTLSFQTLRTTV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 4e-15
Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 37/261 (14%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGA----PDTPEIVGR- 55
M L ++ +D G Y + NA + ++ + A P+I+
Sbjct: 76 MWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLS 135
Query: 56 SDSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK 109
+ + + V +L+ ++ V +T V + +
Sbjct: 136 TSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG-----TTHLLVHDVALE 190
Query: 110 HEYMFRVAAVNAIGTGPAS-HNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV 168
+R A + + + +K + PVI PLK A S +T+ C V
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV 250
Query: 169 ---SGVPTPDIKWYKDDSLI------------KGRNITYENNVARFTVV----NCSESSE 209
+G P + W+ + R ENN V +
Sbjct: 251 FLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDL 310
Query: 210 GR-YTCKATNEAGTAETSCTL 229
+ C N T+
Sbjct: 311 HMDFKCVVHNTLSFQTLRTTV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 24/122 (19%), Positives = 35/122 (28%), Gaps = 13/122 (10%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECV-----VSGVP 172
NA S + V DA P I P + +S L C
Sbjct: 100 TRNASYCDKMSIE---LRVFENTDAFLPFISYP---QILTLSTSGVLVCPDLSEFTRDKT 153
Query: 173 TPDIKWYKDDSLI--KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
I+WYKD L+ V + + G Y C T + + T
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213
Query: 231 VQ 232
++
Sbjct: 214 IE 215
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 2e-12
Identities = 39/322 (12%), Positives = 77/322 (23%), Gaps = 95/322 (29%)
Query: 131 TRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-------VVSGVPTPDIKWYKDDS 183
T K V L C S P ++ W+K+DS
Sbjct: 5 TLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64
Query: 184 LI-----KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ------ 232
+ + ++ + G Y C N + + S L V
Sbjct: 65 ARTVPGEEETRMWAQDGALWLL--PALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF 122
Query: 233 ----------------------------------------GKEIKESARHIITARGTQRK 252
+ + ++ RGT
Sbjct: 123 LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-H 181
Query: 253 LVIKRVTQDDETDIGV---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFL 309
L++ V +D G + + ++ + +L + K +
Sbjct: 182 LLVHDVALEDA---GYYRCVLTF--AHEGQQYNITRSIELRIK------KKKEETIPVII 230
Query: 310 SKLPSVTLVPHLGD-ATFQ----VELSSPDIQVKWLKKGKE----------IKESARHII 354
S L +++ G T + +P + W + E R
Sbjct: 231 SPLKTISASL--GSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 355 TSRG---TQRKLVIKRVTQDDE 373
+ + L+ VT++D
Sbjct: 289 SENNENYIEVPLIFDPVTREDL 310
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 2e-12
Identities = 44/318 (13%), Positives = 71/318 (22%), Gaps = 87/318 (27%)
Query: 332 SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE------------TDIGVL 379
SP I + W K L + Q+D D +
Sbjct: 52 SPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSI 111
Query: 380 ALNVKS--------VSKLKWLDFGSGGWWFESK---------------YKDDSLI--KGR 414
L V +S + L + G YKD L+
Sbjct: 112 ELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE 171
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVK 474
V + + G Y C T + + SI + ++K
Sbjct: 172 KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYN-----ITRSIELRIKKKKEETI 226
Query: 475 PPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534
P I SP + + L S L + K G
Sbjct: 227 P----------------------VIISPLKTISASL-GSRL---TIPCKVFLG-----TG 255
Query: 535 FPRPEISWMKNGAEITDSKACRIFIDEE-------------TSTIAIYSVVRADTST-YT 580
P + W +S + E + V R D +
Sbjct: 256 TPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFK 315
Query: 581 VTATNAAGSTSLDLSLQV 598
N +L +++
Sbjct: 316 CVVHNTLSFQTLRTTVKE 333
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 8/121 (6%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRL-------MAKVKASPAPSIVWFRNNKPLLSSPKK 719
G+ ++ + E + L SP ++ W +N+ ++
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72
Query: 720 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDID 779
++ L L A E D+G Y N + V S
Sbjct: 73 ETRMWAQDGALWLLPALQE-DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQI 131
Query: 780 L 780
L
Sbjct: 132 L 132
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-18
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVAR 198
+ A E L + + + C P + W K ++ + E R
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
T+ ++ YTC + G A++ LLVQG+
Sbjct: 65 LTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRSG 99
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRG 358
S S+ A F +L ++ + G A F + P V W K E++ S +H + G
Sbjct: 2 SSGSSGANCFTEELTNLQVEEK-GTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEG 60
Query: 359 TQRKLVIKRVTQDDE 373
+L I + + D
Sbjct: 61 LTLRLTISALEKADS 75
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-16
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 667 GSPG--QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G A F E V+EKGT K PA ++ W + L +S K + +
Sbjct: 1 GSSGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 769
G + L + + D+ Y G A A++ V + G
Sbjct: 60 GLTLRLTISALEKA-DSDTYTCDI----GQAQSRAQLLVQGRRSG 99
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P ++W K E+ S + + T + I ++ +AD+ TYT A L
Sbjct: 35 PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQL 91
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-18
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
S PG + + V S +S+ + W PP PV GY L + IE +Y
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYAN-GPVQGYRLFCTEVSTGK-EQNIEVDGLSY 63
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++ L EY R A N G G ++
Sbjct: 64 KLEGLKKFTEYSLRFLAYNRYGPGVSTD 91
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-08
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 581 VTATNAAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632
+ A + TS+ ++ V GY + E ++ K + + L Y +E L+
Sbjct: 14 LQAV-STSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNI---EVDGLSYKLEGLK 69
Query: 633 DKSEYYFQVFAENSVGLGP 651
+EY + A N G G
Sbjct: 70 KFTEYSLRFLAYNRYGPGV 88
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-18
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 138 APVDAEAPVIQEPL----KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RN 189
VD AP P K ++V C +G PTP I W K+ +G
Sbjct: 5 TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64
Query: 190 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
I + + + S G YTC N+ G+ + TL V +
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 110
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 7e-18
Identities = 44/252 (17%), Positives = 63/252 (25%), Gaps = 78/252 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW+KNG E
Sbjct: 41 GNPTPSISWLKNGREFRGEHRIGGIKLRH------------------------------- 69
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
++ SL V D+ Y EN G
Sbjct: 70 -------------QQWSLVMESV-------------VPSDRGNY--TCVVENKFGSI-RQ 100
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
T L L SP + L +T + KV + P I W ++ +
Sbjct: 101 TYTLDVLER-----SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 155
Query: 714 LSSPKK------------REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
S ++ L L SE D G+Y ATN +G A +
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SERDGGEYLCRATNFIGVAEKAFWL 214
Query: 762 TVDVEKVGRPSI 773
+V + +
Sbjct: 215 SVHGPRAAEEEL 226
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 1e-16
Identities = 30/136 (22%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
N G+ + V + + A S V C V P I+
Sbjct: 91 VENKFGS--IRQTYT-LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 147
Query: 178 WYKDD---------------SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
W K +++K R + N SE G Y C+ATN G
Sbjct: 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV 207
Query: 223 AETSCTLLVQGKEIKE 238
AE + L V G E
Sbjct: 208 AEKAFWLSVHGPRAAE 223
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-12
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 664 ATLGSPGQAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK- 718
G AP + ER ++K V T+R +P PSI W +N + +
Sbjct: 3 PDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 62
Query: 719 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+ L ++ D G+Y V N+ GS + V RP +
Sbjct: 63 GGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 116
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 2e-11
Identities = 33/212 (15%), Positives = 53/212 (25%), Gaps = 59/212 (27%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
K+ +G I + + + S G YTC N+ G+
Sbjct: 50 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ--------- 100
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T L + I +Q
Sbjct: 101 ---------------------------------TYTLDVLERSPHRPILQAGL-PANQTA 126
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKNGAE------------ITDSKACRIFIDEETSTIAI 568
+ S + K + +P I W+K+ +T K+ E + +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V D Y ATN G L V G
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 39/189 (20%), Positives = 58/189 (30%), Gaps = 50/189 (26%)
Query: 313 PSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQ 370
+ VP F+ + +P + WLK G+E + R I R Q LV++ V
Sbjct: 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 81
Query: 371 DD--------ETDIGVL----ALNVKSVS------------------------------- 387
D E G + L+V S
Sbjct: 82 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD 141
Query: 388 ---KLKWL--DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 442
++WL +G +++K R + N SE G Y C+A
Sbjct: 142 AQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA 201
Query: 443 TNEAGTAET 451
TN G AE
Sbjct: 202 TNFIGVAEK 210
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-18
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 33 SATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE---SHDKDEFM 89
S + P P + + S+ L+W Q + L + +
Sbjct: 6 SGMEPHKV-VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 90 VWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ I +T + V L + Y FR+ + G S
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYS 104
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-06
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
Q L + I++++ + + ++ VE L ++ Y F++ + G
Sbjct: 50 QWLRFSIEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE 102
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 2e-18
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 2/128 (1%)
Query: 37 KVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI-E 95
V + P P P I D +V L W+PP DG S VT Y +E + W+ +
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMG-GSWSPCAK 61
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
+ T + L +Y FR+ A N G T V++ + +
Sbjct: 62 SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKI 121
Query: 156 AGFQSSVT 163
+ +V+
Sbjct: 122 VRGKGTVS 129
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 7e-16
Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVARFTV 201
P + G S C V P + W+KDD +K Y N T+
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+G YT +A N GT E L V
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-14
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
P FI + V E + +V AS P + W ++++ L S K + ++G +
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND 537
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L + + D G+Y V A N G+ + V
Sbjct: 538 YGLTINRVKGD-DKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 9e-10
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 1/131 (0%)
Query: 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWK 527
A PP+ R + + ++ + +++ + A +
Sbjct: 443 DAWPEPLPPLGR-ISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSAN 501
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587
+ P ++W K+ E+ S + + I V D YTV A N+
Sbjct: 502 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561
Query: 588 GSTSLDLSLQV 598
G+ + L V
Sbjct: 562 GTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 8/153 (5%)
Query: 231 VQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290
+ I ++R T+ + IK + D + L +S L +
Sbjct: 414 LTPGNAPGRDSQIPSSRYTKIRDSIKT--KYDAWPEPLPPLG--RISNYSSLRKHRPQEY 469
Query: 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKES 349
S +W S++ P P T V A F + S V W K +E+K+S
Sbjct: 470 SIRDAFWDRSEAQPRF---IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS 526
Query: 350 ARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382
+++ G L I RV DD+ + V A N
Sbjct: 527 VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
V Y I+++E ++ A + T+E LR +Y F++ AEN G
Sbjct: 41 VTNYTIEKREAMGGSWSPCAKSRYTY--TTIEGLRAGKQYEFRIIAENKHG 89
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 405 YKDDSLIKGRN---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+KDD +K Y N T+ +G YT +A N GT E
Sbjct: 517 HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEE 566
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 2e-18
Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 18/144 (12%)
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157
+ Y + K + + N + VKA P I +
Sbjct: 55 NMEYRINKPRAEDSGEYHCVYHFV---SAPKANAT-IEVKAA-----PDITGHKRSENKN 105
Query: 158 FQSSVTLECVVSGVPTPDIKWYKDDSLI-------KGR-NITYENNVARFTVVNCSESS- 208
+ C G P P+ W K ++ + GR I + N +VN +
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 209 EGRYTCKATNEAGTAETSCTLLVQ 232
G Y C ATN G+A S L V+
Sbjct: 166 PGEYECNATNSIGSASVSTVLRVR 189
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 16/126 (12%)
Query: 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 704
+ V P+A + A AP + E + K P P
Sbjct: 76 HFVS-APKANATIEVKA----------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEW 124
Query: 705 VWFRNNKPLLSSPKKRE-----IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759
+W + + I L + D G+Y+ ATN +GSA+
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Query: 760 RVTVDV 765
+ V V
Sbjct: 185 VLRVRV 190
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 9e-15
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI--KWYKDDSLIKGRNITYENNVARFTV 201
P I + + VTL+C ++ + W K+ + N + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME--YRI 60
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK-EIKESARHIITARGTQ 250
G Y C + + + T+ V+ +I R G
Sbjct: 61 NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQD 109
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-10
Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 57/200 (28%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
K+ + N + + G Y C + +
Sbjct: 40 TKNGVELTATRKNASNME--YRINKPRAEDSGEYHCVY-HFVSAPKA------------- 83
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+++++ P + + +S+ +
Sbjct: 84 -----------------------------NATIEVKAAPD------ITGHKRSENKNEGQ 108
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKAC---RIFI--DEETSTIAIYSV-VRADTST 578
+ K G+P PE W K + + + R FI E + + I ++ + D
Sbjct: 109 DAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168
Query: 579 YTVTATNAAGSTSLDLSLQV 598
Y ATN+ GS S+ L+V
Sbjct: 169 YECNATNSIGSASVSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENII 729
P + E + L + +S W +N L ++ K + N+
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NASNME 57
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ + +E D+G+Y V + + + A + V
Sbjct: 58 YRINKPRAE-DSGEYHCVY-HFVSAPKANATIEVKA 91
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 7e-07
Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 54/186 (29%)
Query: 313 PSVTLVPHLGDATFQVELSS---PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVT 369
V + L T Q L+S + W K G E+ + ++ I +
Sbjct: 10 EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME-----YRINKPR 64
Query: 370 QDDE-----------TDIGVLALNVKS----VSKLKWLDFGSGG---------------- 398
+D + VK+ + + G
Sbjct: 65 AEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEW 124
Query: 399 -WWFESKYKDDSLI-------KGR-NITYENNVARFTVVNCSESS-EGRYTCKATNEAGT 448
W K ++ + GR I + N +VN + G Y C ATN G+
Sbjct: 125 MW-----RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179
Query: 449 AETRTM 454
A T+
Sbjct: 180 ASVSTV 185
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEIS--WMKNGAEITDSKACRI 557
Q+ P+ + ++ + ++ + W KNG E+T ++
Sbjct: 1 QNEPR------IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK--- 51
Query: 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ I D+ Y + + + +++V
Sbjct: 52 --NASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA 91
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 85.9 bits (212), Expect = 2e-18
Identities = 32/238 (13%), Positives = 60/238 (25%), Gaps = 18/238 (7%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNA-LGQASATTKVTLLSAPGAPDTP-EIVGRSDSS 59
E +A+L + +D G+YT G S + +L+ P ++ +
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPV 134
Query: 60 VTLHWRPPQDDGHSPVT-----GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
G P + + T ++ + + +
Sbjct: 135 PMARCVST--GGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNV 192
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
+ P + V P V ++ Q+ TL C P P
Sbjct: 193 TCKVEHESFEKPQLLTVN-LTVYYP----PEVSISGYDNNWYLGQNEATLTCDARSNPEP 247
Query: 175 -DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
W + + V + C TN G + T+ V
Sbjct: 248 TGYNWSTTMGPLP-PFAVAQGAQLLIRPV--DKPINTTLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 5e-08
Identities = 37/281 (13%), Positives = 71/281 (25%), Gaps = 84/281 (29%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK---YFGFPRPEISWM 543
P ++ L++ + PQ A Q++ + + + G P +I+W
Sbjct: 102 PQGSRSVDIWLRVLAKPQNTAE--------VQKVQLTGEPVPMARCVSTGGRPPAQITWH 153
Query: 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYII 603
+ + ++ V + T TVT
Sbjct: 154 SDLGGMPNTS----------------QVPGFLSGTVTVT--------------------- 176
Query: 604 QQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
S + D + E+ P+ T V L +
Sbjct: 177 ------------------SLWILVPSSQVDGKNVTCK--VEHESFEKPQLLT--VNLTVY 214
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREI 722
+ I ++ + L +++P P W PL P
Sbjct: 215 YP------PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL---PPFAVA 265
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ +I + + TN LG+ V V
Sbjct: 266 QGAQLLIRPV----DKPINTTLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 29/201 (14%), Positives = 55/201 (27%), Gaps = 58/201 (28%)
Query: 405 YKDDSLIKGRNITYENNVARFTV------VNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
+ D + + TV V S+ TCK +E+
Sbjct: 153 HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP-------- 204
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
+ T NL + PP+ + S +
Sbjct: 205 --------------------------------QLLTVNLTVYYPPE-----VSISGYDNN 227
Query: 519 RLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
+++ + P P +W + F + + + I V + +
Sbjct: 228 WYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP------FAVAQGAQLLIRPVDKPINT 281
Query: 578 TYTVTATNAAGSTSLDLSLQV 598
T TNA G+ +L++QV
Sbjct: 282 TLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 16/138 (11%), Positives = 32/138 (23%), Gaps = 15/138 (10%)
Query: 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI 690
+ D+ Y L LA P ++ + +
Sbjct: 88 VEDEGNYTCLFV--TFPQGSRSVDIWLRVLA----------KPQNTAEVQKVQLTGEPVP 135
Query: 691 RLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL--KEADSETDAGDYKVV 747
P I W + + ++ + G + L S+ D +
Sbjct: 136 MARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCK 195
Query: 748 ATNELGSATHGARVTVDV 765
+E V + V
Sbjct: 196 VEHESFEKPQLLTVNLTV 213
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 24/118 (20%), Positives = 31/118 (26%), Gaps = 30/118 (25%)
Query: 145 PVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPD-----IKWYKDDSLIK------------ 186
V+Q P V GF SVTL C + + W +
Sbjct: 2 VVVQAP--TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSY 59
Query: 187 ---------GRNITYENNVARFTVVNCSESSEGRYTCKA-TNEAGTAETSCTLLVQGK 234
+ E A + EG YTC T G+ L V K
Sbjct: 60 SESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 2e-18
Identities = 47/250 (18%), Positives = 68/250 (27%), Gaps = 78/250 (31%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P + W+KNG E
Sbjct: 45 GNPMPTMRWLKNGKEFKQE----------------------------------------- 63
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+G + + SL V DK Y EN G
Sbjct: 64 ---HRIGGYKVRNQHWSLIMESV-------------VPSDKGNY--TCVVENEYGSI-NH 104
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-- 711
T L + S + L + G + + KV + P I W ++ +
Sbjct: 105 TYHLDVVER-----SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 159
Query: 712 ---------PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
P L K I +L L +E DAG+Y +N +G A A +T
Sbjct: 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV-TEADAGEYICKVSNYIGQANQSAWLT 218
Query: 763 VDVEKVGRPS 772
V + K P
Sbjct: 219 V-LPKQQAPG 227
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 3e-18
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
N G+ +H ++ V + ++ V C V P I+
Sbjct: 95 VENEYGS--INHTY-HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ 151
Query: 178 WYKDDSLIKGR--------------NITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
W K + + +N + N +E+ G Y CK +N G A
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 224 ETSCTLLVQGKE 235
S L V K+
Sbjct: 212 NQSAWLTVLPKQ 223
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 3e-17
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 142 AEAPVIQEPLK----DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYE 193
AP K ++V C G P P ++W K+ K
Sbjct: 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
N + + S +G YTC NE G+ + L V +
Sbjct: 73 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 3e-13
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 668 SPGQAPLFIERFEEK----TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREI 722
+ +AP + + + V T++ +P P++ W +N K +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
++ L ++ +D G+Y V NE GS H + V RP +
Sbjct: 71 VRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPIL 120
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 31/210 (14%), Positives = 51/210 (24%), Gaps = 58/210 (27%)
Query: 405 YKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
K+ K N + + S +G YTC NE G+
Sbjct: 54 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH--------- 104
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T +L + + I +
Sbjct: 105 ---------------------------------TYHLDVVERSRHRPILQAGL-PANAST 130
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKN-----------GAEITDSKACRIFIDEETSTIAIY 569
V + K + +P I W+K+ G +A++
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+V AD Y +N G + L VL
Sbjct: 191 NVTEADAGEYICKVSNYIGQANQSAWLTVL 220
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 49/188 (26%)
Query: 313 PSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQ 370
+ VP F+ +P ++WLK GKE K+ R R L+++ V
Sbjct: 26 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 85
Query: 371 DD--------ETDIGVL----ALNVKSVSKLK---------------------------- 390
D E + G + L+V S+ +
Sbjct: 86 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSD 145
Query: 391 ------WL-DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443
W+ G + + + +N + N +E+ G Y CK +
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
Query: 444 NEAGTAET 451
N G A
Sbjct: 206 NYIGQANQ 213
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 3e-18
Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 41/264 (15%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE--------I 52
+ + L V + +D G Y + N+ +
Sbjct: 57 IHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLP 116
Query: 53 VGRSDSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWNKIETTSTTYEVTKL 106
V V + +++ + L + V +
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI-------HFSGVKDRLIVMNV 169
Query: 107 TTKHEYMFR-VAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV-AGFQSSVTL 164
KH + A+ +G + PVI P +++ S + L
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Query: 165 ECVVSGVPTPDIKWYKDDSLIK-----------------GRNITYENNVARFTVVNCSES 207
C V+G + W + S+I + + V + + S
Sbjct: 230 ICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE-SRF 288
Query: 208 SEGRYTCKATNEAGTAETSCTLLV 231
+ +TC A N G L+
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 4e-17
Identities = 38/283 (13%), Positives = 72/283 (25%), Gaps = 55/283 (19%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ I+W K+ ++ S I + + D+ Y N++ + +S
Sbjct: 34 HKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKIS 93
Query: 596 LQV------LGYIIQQQEKNSLKFTKVATLD-PSTLQYTVEN--------------LRDK 634
+ L Y Q K L L P + EN L
Sbjct: 94 AKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD 153
Query: 635 SEYYFQV-------------------FAENSVGLGPEATTELVALATHATLGSPGQAPLF 675
+ ++ V A + T ++ T P+
Sbjct: 154 NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT--RPVI 211
Query: 676 IERFEEKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR------------EI 722
+ E + G I+L+ V + W N + +
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+L + E +S + A N G ++ V
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 8e-14
Identities = 40/369 (10%), Positives = 65/369 (17%), Gaps = 126/369 (34%)
Query: 143 EAPVIQ--EPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLI-----KGRNITYEN 194
EA + E V+ C ++ I WYKDDS + I
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ---------------------- 232
F G Y C N + +
Sbjct: 62 EKLWFVPA--KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
Query: 233 ---------------------------GKEIKESARHIITARGTQRKLVIKRVTQDDETD 265
K + H + L++ V +
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHR-- 174
Query: 266 IGV---LALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLG 322
G A + ++ + + E +S V
Sbjct: 175 -GNYTCHASY--TYLGKQYPITRVIEFITL------EENKPTRPVIVSPANETMEVDLGS 225
Query: 323 DATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381
W G I E + + KR + L
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV------L 279
Query: 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441
N+ + + +TC
Sbjct: 280 NISEIES-----------------RFYK--------------------------HPFTCF 296
Query: 442 ATNEAGTAE 450
A N G
Sbjct: 297 AKNTHGIDA 305
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 9e-13
Identities = 44/356 (12%), Positives = 80/356 (22%), Gaps = 108/356 (30%)
Query: 305 AVEFLSKLPSVTLVPHLGDATF---QVELSSPDIQVKWLKKGKEI---KESARHIITSRG 358
A + + + LV + + + + W K + E A I +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 359 TQRKLVIKRVTQDDE------------TDIGVLALNV----------KSVSKLKWLDFGS 396
L +D ++ + L
Sbjct: 63 K---LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
Query: 397 GG---------------------WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSE 435
G W YKD + NI + R V+N +E
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQW-----YKDCKPLLLDNIHFSGVKDRLIVMNVAEKHR 174
Query: 436 GRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495
G YTC A+ + + I + + +P
Sbjct: 175 GNYTCHASYTYLGKQY-----PITRVIEFITLEENKPTRPV------------------- 210
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--- 552
I SP + + S ++ + G W NG+ I +
Sbjct: 211 ---IVSPANETMEVDLGSQIQ-----------LICNVTGQLSDIAYWKWNGSVIDEDDPV 256
Query: 553 ---------KACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGSTSLDLSLQV 598
+ + I + +T A N G + + L
Sbjct: 257 LGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 6e-12
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 10/132 (7%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC------VVSGV 171
N+ V+ + + L C
Sbjct: 81 VRNSSYC--LRIKISAKFVENE--PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENN 136
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
P ++WYKD + NI + R V+N +E G YTC A+ + T ++
Sbjct: 137 ELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Query: 232 QGKEIKESARHI 243
+ ++E+
Sbjct: 197 EFITLEENKPTR 208
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 5e-09
Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 20/168 (11%)
Query: 605 QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664
Q K L F + D YY NS +
Sbjct: 58 HQHKEKLWFVPA-------------KVEDSGHYYCV--VRNSSY-CLRIKISAKFVENEP 101
Query: 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
L QA + K + + P + W+++ KPLL
Sbjct: 102 NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK 161
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
I++ + +E G+Y A+ + ++ +
Sbjct: 162 DRLIVMNV----AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK 205
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 671 QAPLFIERFEEK-TVKEKGTIRLMA-KVKASPAP-SIVWFRNNKPLLSSPKKREIFDGEN 727
+A ER E+ V I + + + +I W++++ S ++
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L A E D+G Y V N
Sbjct: 62 EKLWFVPAKVE-DSGHYYCVVRNSSYCLRIKISAKF 96
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-18
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S + F L V G F VEL+ P ++VKW K G+EI+ S ++I +G
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390
QR L I D+++ V A + K ++L
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGDEKCSTELF 92
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 9e-16
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 142 AEAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVA 197
+ + L + + V ++ P ++KWYK+ I+ ++
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ NC + + Y AG + S L V+
Sbjct: 64 ILFINNCQMTDDSEYYV----TAGDEKCSTELFVR 94
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-13
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 667 GSPG-QAPLFIERFEEKT-VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G F + + V + G +R + ++ A P + W++N + + S K
Sbjct: 1 GSSGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
G IL + D +Y V A G + V
Sbjct: 60 GCQRILFINNCQMT-DDSEYYVTA----GDEKCSTELFV 93
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P+ E+ W KNG EI S + I + D S Y VTA + ST L
Sbjct: 33 ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTEL 91
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-18
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 142 AEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVA 197
+ P I +PL+D V L C +S TP + W KD I+ ++ E +A
Sbjct: 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
+ S G YTC+ TA L V+ K S
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTAS----LHVEEKASGPS 101
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-17
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G + I+ E++ V + L ++ + P + W ++ K + S K + +
Sbjct: 1 GSSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
G +L ++ A + DAG+Y + A + V+ EK PS
Sbjct: 60 GTMAMLVIRGASLK-DAGEYTCEVEASKST----ASLHVE-EKASGPS 101
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 8e-16
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S S+ + L + P D + ELS V WLK K I++S ++ + GT
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPG-EDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGT 61
Query: 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389
LVI+ + D + KS + L
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKSTASL 91
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L+ Q ++ ++ + P + W+K+ I S+ + + + + I
Sbjct: 15 LEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLK 73
Query: 575 DTSTYTVTATNAAGSTSL 592
D YT + + SL
Sbjct: 74 DAGEYTCEVEASKSTASL 91
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 405 YKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
KD I+ ++ E +A + S G YTC+ TA
Sbjct: 42 LKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 87.3 bits (215), Expect = 7e-18
Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 23/191 (12%)
Query: 15 DKDLGDYTISLSNALGQASATTKVTLLSAPG-APDTPEIVGRSDSSVTLHWRPPQDDGHS 73
D + SN G K P + + W +
Sbjct: 131 DNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNIS-I 189
Query: 74 PVTGYVLE-------SHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125
YV++ +D+ W + +TT ++T + Y FRVAAVN GT
Sbjct: 190 EPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTR 249
Query: 126 PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW---YKDD 182
+ +++ A L +S SVT+ I W + D
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVT----------IVWDLPEEPD 299
Query: 183 SLIKGRNITYE 193
+ + +
Sbjct: 300 IPVHHYKVFWS 310
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 8e-13
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 11/128 (8%)
Query: 33 SATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--------SHD 84
+ +L+ P IV + + W+ + + + P+TG+ + +
Sbjct: 517 AGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQN 576
Query: 85 KDEFMVWNK---IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ ++ + + V L Y V + G GPA+ T P
Sbjct: 577 SLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSS 636
Query: 142 AEAPVIQE 149
A ++
Sbjct: 637 AHRSHLKH 644
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 7e-06
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 584 TNAAGSTSLDLS--------LQVLGYII------QQQEKNSLKFTKVATLDPSTLQYTVE 629
N+ GS ++ + + V Y + + K + T D +E
Sbjct: 280 VNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILE 339
Query: 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674
L+ +Y ++ A G + V+L +T + + L
Sbjct: 340 KLQPDCDYVVELQAITYWGQTRL-KSAKVSLHFTSTHATNNKEQL 383
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 9e-06
Identities = 23/209 (11%), Positives = 54/209 (25%), Gaps = 21/209 (10%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
++ +L + + + Q + + P P V
Sbjct: 362 LKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAP-FYQDGQLQV 420
Query: 61 TLHWRPPQDDGHSPVTGYVLE------SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
++W+ +D V Y + +H++ + T + L+ +Y
Sbjct: 421 KVYWKKTED---PTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKV 477
Query: 115 RVAAVNAIGTGPASHNT------RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV 168
V + A + K+ + V +++ +V
Sbjct: 478 TVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIV 537
Query: 169 SGVP-TPDIKW----YKDDSLIKGRNITY 192
V T W + G +T+
Sbjct: 538 QDVNITGHFSWKMAKANLYQPMTGFQVTW 566
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 7e-05
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 18/116 (15%)
Query: 559 IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ---------VLGYIIQQQEKN 609
I + S V A + + + + S + + G+ + E
Sbjct: 511 IGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVT 570
Query: 610 SLK---------FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+ ++ L TV NLR + Y +V G GP
Sbjct: 571 TESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKT 626
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 42.3 bits (98), Expect = 7e-04
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 593 DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTL------QYTVENLRDKSEYYFQVFAENS 646
++S++ + Y++Q++ + ++ T+ + + ++R Y F+V A N
Sbjct: 186 NISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNV 245
Query: 647 VGLGPEATTELVALATHATLGSPGQAP 673
G T + +P
Sbjct: 246 HGTRG-FTAPSKHFRSSKDPSAPPAPA 271
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 8e-18
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
E + + +VTL C V P+P I W KD G + + +
Sbjct: 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD-----GVPLPLPPS-PVLILP 62
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+G Y+C AT+ + + S + + E
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-14
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
++ S + + E V GT+ L +V A P+P I W ++ PL P
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------ 55
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ +L L E D G Y VAT+ V++ +
Sbjct: 56 ---SPVLILPEI-GPQDQGTYSCVATHSSHGPQESRAVSISI 93
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553
++ Q + + ++ + + P P+I WMK+G +
Sbjct: 2 SSGSSGLEEVQ------LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP- 54
Query: 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLSLQVL 599
+ + + + D TY+ AT+++ S +S+ ++
Sbjct: 55 --------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISII 94
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 8e-18
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLES-HDKDEFMVWNK-IETTST 99
S+ +P + R+ V LHW PP + + GYVLE + V + + T T
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTET 63
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V L Y FR+ A S
Sbjct: 64 ELLVPGLIKDVLYEFRLVAFAGSFVSDPS 92
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
+ GY+++ ++ + + + + V L Y F++ A + + T
Sbjct: 37 LDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
Query: 658 V 658
V
Sbjct: 97 V 97
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 9e-18
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 137 KAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYE 193
V I E L+D SS T C +S + W+ D + + I +
Sbjct: 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ 65
Query: 194 NN-VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
T+ + G EAG S L V K
Sbjct: 66 PGGYHVLTLRQLALKDSGTIYF----EAGDQRASAALRVTEKPSV 106
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EI 722
++ G+ IE E+ V+E + ++ + + WF + PL ++ +
Sbjct: 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA 64
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
G +L L++ + D+G A G A + V
Sbjct: 65 QPGGYHVLTLRQLALK-DSGTIYFEA----GDQRASAALRV 100
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-11
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSR-GTQR 361
V + L V V ATF+ +S + V W + + + I ++ G
Sbjct: 12 RRVHIIEDLEDVD-VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 362 KLVIKRVTQDDE 373
L ++++ D
Sbjct: 71 VLTLRQLALKDS 82
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 6/102 (5%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD 551
+ ++ +Q I +L+ + S + + W + +
Sbjct: 2 SSGSSGLVQGRR--VHII---EDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA 56
Query: 552 SKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
++ I + + + D+ T A + S +L
Sbjct: 57 NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAAL 98
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-17
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 39 TLLSAPGAPDTPEIVGR--SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET 96
+ S P AP ++ ++ + HW PP H + Y++E +W
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPP-IHTHGLIREYIVEYSRSGS-KMWASQRA 60
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
S E+ L Y RVAAV + G G S
Sbjct: 61 ASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWS 92
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-07
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ YI++ S + ++ ++NL + Y +V A S G+G
Sbjct: 39 LIREYIVEYSRSGSKMWASQRA---ASNFTEIKNLLVNTLYTVRVAAVTSRGIGN 90
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-17
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--------RNITYENN 195
AP I L+ + + V G P P ++W+ + +++ +
Sbjct: 4 APTITF-LESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ N + + G YT A NE G E + G
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-17
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-- 728
I E T I VK +P P++ WF N L S N
Sbjct: 2 HFAPTITFLESPTSDHHWCIPF--TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 729 ---ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
L+L + + GDY ++A NE G +G P I+
Sbjct: 60 YHGCLQLDNP-THMNNGDYTLIAKNEYGKDEKQISAHF----MGWPGID 103
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-14
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADT 576
W + G P+P + W NGA + +SK I + + + +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 577 STYTVTATNAAGSTSLDLSLQVLG 600
YT+ A N G +S +G
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMG 98
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPG 45
E L + + GDYT+ N G+ + PG
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 2e-17
Identities = 42/242 (17%), Positives = 69/242 (28%), Gaps = 72/242 (29%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P I W K G ++
Sbjct: 35 GRPTPTIEWYKGGER-------------------------------------------VE 51
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
SL F ++ E + A N +G
Sbjct: 52 TDKDDPRSHRMLLPSGSLFFLRI----------VHGRKSRPDEGVYVCVARNYLG----- 96
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKP 712
A++ A+L F + + V + + + P P+I W ++ P
Sbjct: 97 ----EAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP 152
Query: 713 LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRP 771
L ++ I G+ +I + ++DAG Y V TN +G + A +TV RP
Sbjct: 153 LDDKDERITIRGGKLMITYTR----KSDAGKYVCVGTNMVGERESEVAELTVLE----RP 204
Query: 772 SI 773
S
Sbjct: 205 SF 206
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 9e-16
Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 12/135 (8%)
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
+ + E ++ A N +G V ++ D +
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGE------AVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 162 VTLEC-VVSGVPTPDIKWYKDDSLIK--GRNITYENNVARFTVVNCSESSEGRYTCKATN 218
+EC G P P I W KD S + IT + +S G+Y C TN
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK--LMITYTRKSDAGKYVCVGTN 186
Query: 219 EAGTAETS-CTLLVQ 232
G E+ L V
Sbjct: 187 MVGERESEVAELTVL 201
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 9e-15
Identities = 33/176 (18%), Positives = 46/176 (26%), Gaps = 55/176 (31%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-------KGRNITY 192
+ P I E D + TL C G PTP I+WYK + + +
Sbjct: 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64
Query: 193 ENN---VARFTVVNCSESSEGRYTCKATNEAGTAETSC-TLLVQ---------------- 232
+ R S EG Y C A N G A + +L V
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 233 -------------------------GKEIKESARHIITARGTQRKLVIKRVTQDDE 263
G + + I G L+I + D
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---LMITYTRKSDA 177
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-12
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK----- 718
+L P +E + V + L K + P P+I W++ + + +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 719 KREIFDGENIILELKEAD-SETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSI 773
+ + G L + S D G Y VA N LG A +H A + V + R
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV---AILRDDF 114
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 3e-11
Identities = 35/205 (17%), Positives = 56/205 (27%), Gaps = 54/205 (26%)
Query: 407 DDSLIKGRNITYENN---VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463
D + + + R S EG Y C A N G A + +
Sbjct: 53 DKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDAS------LE 106
Query: 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523
V++ + D R P V ++ Q P
Sbjct: 107 VAILRDDFRQNPSDVMVA---------VGEPAVMECQPP--------------------- 136
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
G P P ISW K+G+ + D + I ++D Y
Sbjct: 137 ---------RGHPEPTISWKKDGSPLDDKD--ERIT-IRGGKLMITYTRKSDAGKYVCVG 184
Query: 584 TNAAG---STSLDLSLQVLGYIIQQ 605
TN G S +L++ ++
Sbjct: 185 TNMVGERESEVAELTVLERPSFVKA 209
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 48/190 (25%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESA-----RHIITSRGT 359
+ + + AT + E P ++W K G+ ++ ++ G+
Sbjct: 11 RIVEHPSDLIVSKG-EPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 360 QRKLVIKRVTQDD--ETDIGV---LALNV--KSVSKLKWLDFGSGGWWFESKYKDDSLIK 412
L R+ D GV +A N ++VS L+ F D +
Sbjct: 69 ---LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV 125
Query: 413 GRNITYE----------------NNVA------RFTV-------VNCSESSEGRYTCKAT 443
G E + R T+ +S G+Y C T
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGT 185
Query: 444 NEAGTAETRT 453
N G E+
Sbjct: 186 NMVGERESEV 195
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
G EAT + +F + KE ++ V +S P
Sbjct: 81 VTAEDGTQSEATVNVKIFQ----------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 703 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762
+I+W + ++ R I N L+++ +TD G Y+ + +
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 763 VDV 765
V V
Sbjct: 189 VIV 191
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 5e-16
Identities = 29/195 (14%), Positives = 52/195 (26%), Gaps = 33/195 (16%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
G +I W +G L + + +VWN ++++ T
Sbjct: 25 QVAGDAKDKDI----------SWF--SPNGE------KLSPNQQRISVVWNDDDSSTLT- 65
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
+ +++ GT S T V + + +
Sbjct: 66 -IYNANIDDAGIYKCVVTAEDGT--QSEATVNVKIFQK-----LMFKNAPTPQEFKEGED 117
Query: 162 VTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+ C V P I W + R I NN + ++ EG Y C+
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCEGR 175
Query: 218 NEAGTAETSCTLLVQ 232
A + V
Sbjct: 176 ILARGEINFKDIQVI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 3e-15
Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 48/184 (26%)
Query: 416 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKP 475
+ +++ + T+ N + G Y C T E GT T+
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV--------------------- 93
Query: 476 PMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF 535
N++I + Q +
Sbjct: 94 --------------------NVKIFQKLM------FKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
P I W G ++ K R + + + I + + D TY A
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186
Query: 596 LQVL 599
+QV+
Sbjct: 187 IQVI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 5e-12
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVP-TPDIKWYKDDS-LIKGRN-----ITYENNVA 197
+ S C V+G DI W+ + + + +++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQGK 234
T+ N + G Y C T E GT + + + K
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK 100
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKR---EIFDGE 726
+ + + + + +V I WF N LS ++R D +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 727 NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
+ L + A + DAG YK V T E G+ V +
Sbjct: 61 SSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNVKI 97
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 536 PRPEISWMKNGAEITDSKACRIFI---DEETSTIAIYSVVRADTSTYTVTATNAAGS-TS 591
+ISW E RI + D+++ST+ IY+ D Y T G+ +
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 592 LDLSLQVL 599
+++++
Sbjct: 91 ATVNVKIF 98
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-17
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNV 196
+ + LK A ++ TL+C +S ++W K ++ + +
Sbjct: 4 GSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTR 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
+ + S + G Y+C G TS TL V+ +
Sbjct: 62 CELQIHDLSVADAGEYSC----MCGQERTSATLTVRALPAR 98
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 8e-15
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G + F + + K E T L + + S + W + + L + D
Sbjct: 1 GSSGSSGPARFTQDLKTKEASEGATATL--QCELSKVAPVEWKKGPETLRDGGRYSLKQD 58
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSAT 756
G L++ + DAG+Y + E SAT
Sbjct: 59 GTRCELQIHDLSVA-DAGEYSCMCGQERTSAT 89
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-13
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S S+ F L + AT Q ELS V+W K + +++ R+ + GT
Sbjct: 3 SGSSGPARFTQDLKTKEASEG-ATATLQCELS-KVAPVEWKKGPETLRDGGRYSLKQDGT 60
Query: 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389
+ +L I ++ D + + ++ + L
Sbjct: 61 RCELQIHDLSVADAGEYSCMCGQERTSATL 90
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+ W K + D + D + I+ + AD Y+ S +L
Sbjct: 34 KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSATL 90
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-17
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIET 96
+ S P A + S SS++L W P+ V Y ++ + ++T
Sbjct: 3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPS-GAVLDYEVKYHEKGAEGPSSVRFLKT 61
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ E+ L Y+ +V A + G GP
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAGYGPFG 93
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
+ +SL L+ VL Y ++ EK + + V L S + + L+ + Y
Sbjct: 18 RSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASY 77
Query: 638 YFQVFAENSVGLGP 651
QV A + G GP
Sbjct: 78 LVQVRARSEAGYGP 91
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-17
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRG 358
S S+ +E L + +T V A F+ E+S + KW K G E++ S R I+ G
Sbjct: 2 SSGSSGQLEVLQDIADLT-VKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVG 60
Query: 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390
KLVI V +DE D + K
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK 92
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 6e-16
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 667 GSPG-QAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G L ++ + TVK +V + + W++N + S +
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHV 59
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
G L + + E D GDY V S + A++ KV PS
Sbjct: 60 GRFHKLVIDDVRPE-DEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-15
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 138 APVDAEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYE 193
+ + + + + D +C VS KWYK+ ++ I++
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV 59
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEI 236
+ + + EG YT A + S L ++
Sbjct: 60 GRFHKLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIKV 100
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ W KNG E+ SK I + I V D YT A S S L+
Sbjct: 35 EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94
Query: 596 LQ 597
Sbjct: 95 FL 96
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 6e-04
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 405 YKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452
YK+ ++ I++ + + + EG YT A + +
Sbjct: 42 YKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAK 92
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 5e-17
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 34 ATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD-EFMVWN 92
++ + +AP +SV+L W+ P+ + + Y ++ ++KD E ++
Sbjct: 1 GSSGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQP-NGIILEYEIKYYEKDKEMQSYS 59
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
++ +T V+ L Y+F+V A + G G S
Sbjct: 60 TLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFS 95
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
AG TS+ L +L Y I+ EK+ + +TL T + TV L+ + Y
Sbjct: 21 RAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDK-EMQSYSTLKAVTTRATVSGLKPGTRY 79
Query: 638 YFQVFAENSVGLGP 651
FQV A S G G
Sbjct: 80 VFQVRARTSAGCGR 93
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 8e-17
Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSV 162
+ + + A N +G S + + + KD+ +
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQ-AVSRHASLQIA-----VLRDDFRVEPKDTRVAKGETA 126
Query: 163 TLECV-VSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV--------NCSESSEGRYT 213
LEC G+P P + W KD + +R +V N EG Y
Sbjct: 127 LLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYK 186
Query: 214 CKATNEAGTAETSC-TLLVQGK-EIKESARH 242
C A N GT E+S L+VQ K H
Sbjct: 187 CIAQNLVGTRESSYAKLIVQVKAAAHHHHHH 217
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 4e-16
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 138 APVDA--EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-----KGRNI 190
AP+ ++P I E D V TL C V G P P I+W+KD + K +
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 191 TYENNVARF--TVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232
+++ F T+ E G Y C A N G A + +L +
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 8e-16
Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 75/248 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P I W K+G V + ++ V +
Sbjct: 35 GKPEPTIEWFKDGEP----------------------VSTNEKKSHRVQFKD-------- 64
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+L F + ++ +++ + A+N VG
Sbjct: 65 ---------------GALFFYRT-----------MQGKKEQDGGEYWCVAKNRVG----- 93
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM-AKVKASPAPSIVWFRNNKP 712
A++ HA+L F ++ V + T L K P P+++W ++ P
Sbjct: 94 ----QAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVP 149
Query: 713 LLSSPKKREIFDGENIILE---LKEAD-SETDAGDYKVVATNELGSA-THGARVTVDVEK 767
L I++ L ++ D G+YK +A N +G+ + A++ V V
Sbjct: 150 LDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV-- 207
Query: 768 VGRPSINS 775
+ + +
Sbjct: 208 --KAAAHH 213
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
A L Q+P IE + VK+ L KV+ P P+I WF++ +P+ ++ KK
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 724 ---DGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPSI 773
DG + E D G+Y VA N +G A + A + + V R
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI---AVLRDDF 111
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-11
Identities = 40/218 (18%), Positives = 61/218 (27%), Gaps = 62/218 (28%)
Query: 405 YKDDSLI-----KGRNITYENNVARF--TVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457
+KD + K + +++ F T+ E G Y C A N G A
Sbjct: 44 FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA-------- 95
Query: 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517
+R +LQI K
Sbjct: 96 ---------------------------------VSRHASLQIAVLR--DDF---RVEPKD 117
Query: 518 QRLSVKSQWKVE-VKYFGFPRPEISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSV 571
R++ +E G P P + W+K+G + D KA + + I +V
Sbjct: 118 TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 572 VRADTSTYTVTATNAAG---STSLDLSLQVLGYIIQQQ 606
D Y A N G S+ L +QV
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 47/192 (24%)
Query: 307 EFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKES---ARHIITSRGT-Q 360
+ + + + AT +VE P+ ++W K G+ + + + + G
Sbjct: 11 RIIEHPTDLVVKKN-EPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 361 RKLVIKRVTQDDETDIGVLALNV--KSVSKLKWLDFGSGGWWFESK-------------- 404
++ + D + +A N ++VS+ L F +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 405 ---------------YKDDSLIKGRNITYENNVARFTVV--------NCSESSEGRYTCK 441
KD + +R +V N EG Y C
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCI 188
Query: 442 ATNEAGTAETRT 453
A N GT E+
Sbjct: 189 AQNLVGTRESSY 200
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 9e-17
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARF 199
P + + + + +E VV G P P + W + ++ ++ Y
Sbjct: 7 YPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 200 ----TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + G YT A N GTA + +
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 6e-15
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 729
P + EE ++ + I V+ +P P++ W N +PL S + E I
Sbjct: 6 YYPPRVVSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 730 ---LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + + + G+Y ++A N LG+A
Sbjct: 64 EGCLLFNKP-THYNNGNYTLIAKNPLGTANQTINGHFLK 101
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 9e-15
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC 555
L + PP+ + + ++ + +E G P P + W+ NG + +SK
Sbjct: 2 ALTVYYPPR---------VVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII 52
Query: 556 RIFIDEET----STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+ +E + + YT+ A N G+ + ++ L
Sbjct: 53 HVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 14/53 (26%), Positives = 18/53 (33%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVG 54
E L K + G+YT+ N LG A+ T L P D
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-16
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+E L V V A F++ELS PD+ +W KG+ + S I G + L++
Sbjct: 6 IEVEKPLYGVE-VFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 366 KRVTQDDETDIGVLALNVKSVSKLK 390
++ A N KS + LK
Sbjct: 65 HNCQLGMTGEVSFQAANTKSAANLK 89
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-14
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
G+ + V T ++ + P W +PL +SP I DG+
Sbjct: 1 GAMAL-IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 727 NIILELKEADSETDAGDYKVVATNELGSAT 756
IL L G+ A N +A
Sbjct: 59 KHILILHNCQLG-MTGEVSFQAANTKSAAN 87
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-14
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 142 AEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVA 197
A A + +++PL + E +S P +W + I +
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKH 60
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ NC G + +A N +++ L V+
Sbjct: 61 ILILHNCQLGMTGEVSFQAAN----TKSAANLKVK 91
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-10
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P W G + S C I D + + +++ T + A N + +L
Sbjct: 32 PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAANL 88
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-16
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENNV 196
V A E L++ A ++ L C +S ++W+K ++ R ++ +
Sbjct: 15 VRALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDGDRHSLRQDGAR 72
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
+ G Y C G TS L V+ S
Sbjct: 73 CELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMPSGPS 111
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
T A L F E + E T L + + S + W++ ++ L +
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVL--RCELSKMAPVEWWKGHETLRDGDRHSL 66
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSAT 756
DG L+++ +E DAG+Y + E SA
Sbjct: 67 RQDGARCELQIRGLVAE-DAGEYLCMCGKERTSAM 100
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-12
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
++F L + A + ELS V+W K + +++ RH + G + +L
Sbjct: 18 LPIKFTEGLRNEE-ATEGATAVLRCELS-KMAPVEWWKGHETLRDGDRHSLRQDGARCEL 75
Query: 364 VIKRVTQDDE 373
I+ + +D
Sbjct: 76 QIRGLVAEDA 85
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS--QWKVEVKYFGFPRPEISWMKNGAEITD 551
+ L +++ P L+++ + + + E+ + W K + D
Sbjct: 10 SAMLTVRALP--IKFT---EGLRNEEATEGATAVLRCELS----KMAPVEWWKGHETLRD 60
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+ D + I +V D Y S L
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAML 101
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-16
Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 9/143 (6%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL-------E 81
G S+ T P P S + L W P + +T Y + +
Sbjct: 84 GPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDD 142
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + + L Y + V A N G GP + +
Sbjct: 143 NRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRP 202
Query: 142 AEAPVIQEPLKDSVAGFQSSVTL 164
P+I + + +
Sbjct: 203 MSIPIIPDIPIVDAQSGEDYDSF 225
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 3e-12
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYE 102
GAP P + +W PP GY ++ D + +++ + E
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPAS 128
+T L +Y +V A A G GP S
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYS 87
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 597 QVLGYIIQQQEKNS-----LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ Y + N KV +P +ENLR+ Y + V A N G GP
Sbjct: 128 EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP 187
Query: 652 EATTELVALATHATLGSPGQAPLFIE 677
E ++ LAT P P+ +
Sbjct: 188 E-REAIINLATQP--KRPMSIPIIPD 210
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
A AAGS + + + +GY ++ + ++ LD + NL
Sbjct: 12 PNAK-AAGSRKIHFNWLPPSGKPMGYRVKYWIQGD-SESEAHLLDSKVPSVELTNLYPYC 69
Query: 636 EYYFQVFAENSVGLGPE 652
+Y +V A + G GP
Sbjct: 70 DYEMKVCAYGAQGEGPY 86
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 2e-16
Identities = 38/248 (15%), Positives = 72/248 (29%), Gaps = 15/248 (6%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIVG-----RSDSSVTLHWRPPQDDGHSPV 75
+ NALG+ ++ P+ P + S + L W P +
Sbjct: 173 VWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVII 231
Query: 76 TGYVLESHDKDEFMVWNKIET-----TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHN 130
Y ++ KD W++I T +++ V L EY+FR+ + G G S
Sbjct: 232 LKYNIQYRTKDA-STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 290
Query: 131 TRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI 190
+ D + K + Q T++ V +P + D +
Sbjct: 291 SEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRW 350
Query: 191 TYENNVARFTVVNCS-ESSEGRYTCK--ATNEAGTAETSCTLLVQGKEIKESARHIITAR 247
+ + RY N G ++ + + + A
Sbjct: 351 KSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAF 410
Query: 248 GTQRKLVI 255
L +
Sbjct: 411 PKDNMLWV 418
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 7e-15
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWR-PPQDDGHSPVTGYVLESHDKDEF 88
G + + P T + L W P D + + Y +
Sbjct: 482 GSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN 541
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
++++ T Y ++ LT+ YM R+AA G T
Sbjct: 542 ETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-14
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 5/139 (3%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIVGR---SDSSVTLHWRPPQDDGHSPVTG 77
T+++ N +G S +T+ + P + + D+ + + W P++ +
Sbjct: 375 ATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 433
Query: 78 YVLESHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ + S W + + T TY L Y+ V V A G G Y+
Sbjct: 434 WCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQ 493
Query: 137 KAPVDAEAPVIQEPLKDSV 155
P ++ K+
Sbjct: 494 APPSKGPTVRTKKVGKNEA 512
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 6e-12
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 5/140 (3%)
Query: 3 EDSATLTIVKFEDKDLGDY-TISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++++T ++ I L Q + P P + +
Sbjct: 61 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMR 120
Query: 62 LHWRPPQDDGHSPVTGYVLESH-DKDEFMVWNKIETTSTTYEVTKLTTKH-EYMFRVAAV 119
W ++ T + L+S +F T T+ V T V A
Sbjct: 121 CEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE 178
Query: 120 NAIGTGPASHNTRYVVVKAP 139
NA+G + H V K
Sbjct: 179 NALGKVTSDHINFDPVYKVK 198
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 160 SSVTLECVVS-------GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
S+ T CV+ V I W + I T N A S +
Sbjct: 19 SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQL 78
Query: 213 TCKATNEAGTAETSCTLLVQ 232
TC + + +
Sbjct: 79 TCNILTFGQLEQNVYGITII 98
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 42/289 (14%), Positives = 74/289 (25%), Gaps = 89/289 (30%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+ I T N A S + TC +
Sbjct: 45 KTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQN------------- 91
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA-IKLVDSNLKSQRLSVK 523
+ PP++P + + + K R
Sbjct: 92 ---------------------------VYGITIISGLPPEKPKNLSCIVNEGKKMRCE-- 122
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
W + + + D C+ D TS YS V V A
Sbjct: 123 --WDGGRETHLETNFTLKSEWATHKFAD---CKAKRDTPTSCTVDYSTVYFVNIEVWVEA 177
Query: 584 TNAAGS-------------------------------TSLDLS--------LQVLGYIIQ 604
NA G + L L+ + +L Y IQ
Sbjct: 178 ENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQ 237
Query: 605 QQEKNSLKFTKVATLD--PSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ K++ ++++ D + +TV++L+ +EY F++ G G
Sbjct: 238 YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGY 286
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ Y I + + +D S +YT+ +L + Y ++ A G
Sbjct: 528 IRNYTIFYRTIIGNETAV--NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD 579
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 17/154 (11%), Positives = 35/154 (22%), Gaps = 38/154 (24%)
Query: 530 VKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
+ YF I W N I + I T++ ++ + + T
Sbjct: 32 MDYFHVNANYIVWKTNHFTIPKE---QYTIINRTASSVTFTDIASLNIQLTCNILTFGQL 88
Query: 590 TSLDLSLQVL-----------------------------------GYIIQQQEKNSLKFT 614
+ ++ + ++ +
Sbjct: 89 EQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFAD 148
Query: 615 KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
A D T + V AEN++G
Sbjct: 149 CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALG 182
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 2e-16
Identities = 60/514 (11%), Positives = 124/514 (24%), Gaps = 120/514 (23%)
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
YE++ + + + G ++ T V P E +
Sbjct: 47 NNRKVYELSNVQEDSQP--MCYSNCPDGQ--STAKTFLTVYWTP---ERVELAPLPSWQP 99
Query: 156 AGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
G ++TL C V G + + + +K E TV+ + +
Sbjct: 100 VG--KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF 157
Query: 213 TCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALN 272
+C+ + QG E+ E+ + ++ ++
Sbjct: 158 SCRTELDLRP---------QGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTV 208
Query: 273 VKSVSKLKWLARWTSDLESTAWFWWFESKS-TPAVEFLSKLPSVTLVPHL-----GDATF 326
V S+ L ++ + P V + + S + G
Sbjct: 209 VCSLDGLFPVSEAQ-------VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 327 QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386
+ + +T VI + E +
Sbjct: 262 TCAVILGNQSQ-----------ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR 310
Query: 387 SKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446
+K+ + L + E + ++C AT E
Sbjct: 311 AKVTL-----------NGVPAQPLGPRAQLL-------LKAT--PEDNGRSFSCSATLEV 350
Query: 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQP 506
+K +T L++ P+
Sbjct: 351 AGQLI--------------------------------------HKNQTRELRVLYGPRLD 372
Query: 507 AIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTI 566
+ SQ + +G P PE+ +K+G
Sbjct: 373 ER----DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG-------------TFPLPIG 415
Query: 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V R TY A + G + ++++ VL
Sbjct: 416 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 5e-15
Identities = 45/386 (11%), Positives = 80/386 (20%), Gaps = 89/386 (23%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+ + +K E TV+ + ++C+ + GL L
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ-------GLELFENT 176
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
S P P Q V +
Sbjct: 177 SAPYQLQTFVLPA------------------------TPPQLVSPRVLEVDTQGTVVCSL 212
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
F ++ + + ++ S A SV D T +T
Sbjct: 213 DGL-----FPVSEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 585 NAAG----STSLDLSLQVLGYIIQQQEKNSLKFTKVATL--------------------- 619
G T +++ K + T+
Sbjct: 265 VILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLG 324
Query: 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
+ L + + A V + L P ER
Sbjct: 325 PRAQLLLKATPEDNGRSFSCS--ATLEVAGQLIHKNQTRELRVLY-------GPRLDERD 375
Query: 680 --EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS 737
T E M + +P P + ++ L + + +
Sbjct: 376 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV--------------T 421
Query: 738 ETDAGDYKVVATNELGSATHGARVTV 763
G Y A + G T V V
Sbjct: 422 RDLEGTYLCRARSTQGEVTREVTVNV 447
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 1e-12
Identities = 40/236 (16%), Positives = 69/236 (29%), Gaps = 37/236 (15%)
Query: 5 SATLTI-VKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP-EIVGRSDSSVTL 62
SA ++ V ED+ T ++ VT+ S P + + VT+
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 303
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK--HEYMFRVAAVN 120
+ H + + ++ T + F +A
Sbjct: 304 KC-----EAHPRAKVTL----------NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATL 348
Query: 121 AI-GTGPASHNTRYVVVKAPVDAEAPVIQEPL--KDSVAGFQSSVTLECVVSGVPTPDIK 177
+ G + TR + V P + E + S T C G P P++K
Sbjct: 349 EVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELK 403
Query: 178 WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
KD + + V + EG Y C+A + G T+ V
Sbjct: 404 CLKDGTF----------PLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 9e-09
Identities = 27/242 (11%), Positives = 56/242 (23%), Gaps = 28/242 (11%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALG--------QASATTKVTLLSAPGAPDTPEI- 52
E T T++ D +++ L SA ++ P P
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP 197
Query: 53 -VGRSDSSVTLHWRPPQDDGHSPVTGY-VLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
V D+ T+ S + L + + + ++ +
Sbjct: 198 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG 257
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
A + + V + + P L + VT++C
Sbjct: 258 TQRLTCAVILGNQSQETLQT---VTIYSF-----PAPNVILTKPEVSEGTEVTVKCEAHP 309
Query: 171 VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+ L + E + ++C AT E
Sbjct: 310 RAKVTLNGVPAQPLGPRAQLL-------LKAT--PEDNGRSFSCSATLEVAGQLIHKNQT 360
Query: 231 VQ 232
+
Sbjct: 361 RE 362
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 4e-07
Identities = 42/403 (10%), Positives = 80/403 (19%), Gaps = 95/403 (23%)
Query: 409 SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468
L K + NN + + N E + + C + G + +
Sbjct: 36 PLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPDGQSTAK---------------- 77
Query: 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528
V +RV + + L+ Q P
Sbjct: 78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR--------------------- 116
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
+ ++ E+ + T + + ++
Sbjct: 117 -------ANLTVVLLRGEKELKRE---PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 589 STSLDLSLQV-----------------LGYIIQQQEKNSLKFTKVATLDPSTLQYTVENL 631
L+L L + + V
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226
Query: 632 RDKSEYY---------FQVFAENSVGLGPEATTELVALATHATLGSPGQA-------PLF 675
F A SV E T L P
Sbjct: 227 LGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 286
Query: 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 735
+ V E + + + ++ G L LK A
Sbjct: 287 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPL------------GPRAQLLLK-A 333
Query: 736 DSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
E + + AT E+ T ++ + P ++ D
Sbjct: 334 TPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDC 376
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 7e-06
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220
SV + C S + L K + NN + + N E + + C +
Sbjct: 16 SVLVTCSTSCDQPMLLGIET--PLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPD 71
Query: 221 GTAETSCTLLVQ 232
G + L V
Sbjct: 72 GQSTAKTFLTVY 83
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-16
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-----ITYENNV 196
+ ++ + L+D+ A V LEC VS ++KW+K+ I I E
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ +++ Y+ T ++S L V K
Sbjct: 64 HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKS 98
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 8e-15
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 667 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-- 723
GS G + + ++ E+ T + L +V + ++ WF+N + ++ PK R
Sbjct: 1 GSSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV 59
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+G+ IL ++ A DA +Y V+ T S A+++VD+
Sbjct: 60 EGKKHILIIEGATKA-DAAEYSVMTTGGQSS----AKLSVDL 96
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEI--KESARHIITSR 357
S + + +L T + E+S D VKW K G+EI +R+ I
Sbjct: 2 SSGSSGIMVTKQLEDTT-AYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVE 60
Query: 358 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389
G + L+I+ T+ D + V+ +S +KL
Sbjct: 61 GKKHILIIEGATKADAAEYSVMTTGGQSSAKL 92
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+ W KNG EI R I E + I +AD + Y+V T S L
Sbjct: 34 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKL 92
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-16
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNVAR 198
+ V L C V G+ PDI+W KD ++++ + Y ++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQG 233
++ + S GRY C+ + T + L V+G
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 3e-15
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-I 176
+ T S ++ V+ P KD + L C G P P I
Sbjct: 79 VEDGGET-EISQPV-WLTVEGV-----PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI 131
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSC-TLLVQ 232
W++ + I G + + V ++S ++C+A N G A + T+ +Q
Sbjct: 132 VWWRGTTKIGGP----APSPSVLNVTGVTQS--TMFSCEAHNLKGLASSRTATVHLQ 182
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 8e-12
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 672 APL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 729
A L + + TV + ++L V+ P I W ++ + + + ++ I
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 730 -LELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765
L LK +DAG Y + + + +TV+
Sbjct: 61 FLSLKSV-ERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 702
E+ L P F ++ V +L + P P
Sbjct: 79 VEDGGETEISQPVWLTVEG----------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP 128
Query: 703 -SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
+IVW+R + + + + T + + A N G A+
Sbjct: 129 VTIVWWRGTTKIGGPAPSPSVLNVTGV----------TQSTMFSCEAHNLKGLASSRT-A 177
Query: 762 TVDVE 766
TV ++
Sbjct: 178 TVHLQ 182
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 9e-10
Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 32/145 (22%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAG--- 588
G P+I W+K+GA + + I + E+ +++ SV R+D Y +
Sbjct: 28 GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 87
Query: 589 STSLDLSLQVLGYIIQQ------QEKNSLKFT-------------------KVATLDPST 623
S + L+++ + + + + + K+ PS
Sbjct: 88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP 147
Query: 624 LQYTVENLRDKSEYYFQVFAENSVG 648
V + + + A N G
Sbjct: 148 SVLNVTGVTQSTMF--SCEAHNLKG 170
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 62/193 (32%)
Query: 405 YKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
KD ++++ + Y ++ + ++ + S GRY C+ + T ++
Sbjct: 37 VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP------ 90
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
L ++ P K
Sbjct: 91 -----------------------------------VWLTVEGVPF------FTVEPKDLA 109
Query: 520 LSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578
+ + +++ + G P P I W + +I S + + V ++
Sbjct: 110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTGV--TQSTM 160
Query: 579 YTVTATNAAGSTS 591
++ A N G S
Sbjct: 161 FSCEAHNLKGLAS 173
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 50/185 (27%)
Query: 307 EFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRK--L 363
+ + +T+ + + ++W+K G ++ + I L
Sbjct: 4 KLMGAPVKLTVSQG-QPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 364 VIKRVTQDDE------------TDIGVLA-LNVKS----VSKLKWLDFGSGG-------- 398
+K V + D T+I L V+ + K L
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 399 ----------WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448
WW + + I G + + V ++S ++C+A N G
Sbjct: 123 VGPPEPVTIVWW-----RGTTKIGGP----APSPSVLNVTGVTQS--TMFSCEAHNLKGL 171
Query: 449 AETRT 453
A +RT
Sbjct: 172 ASSRT 176
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-16
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNV 196
+ I PL D + L+C +S KW K+ ++ + + +
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRI 60
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + N EG Y +A + V
Sbjct: 61 HKLVIANALTEDEGDYVF--APDAYNVTLPAKVHVI 94
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-15
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 667 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 725
GS G + L + ++TV I L K + S W +N P+ S + + + G
Sbjct: 1 GSSGSSGLKILTPLTDQTVNLGKEICL--KCEISENIPGKWTKNGLPVQESDRLKVVQKG 58
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L + A +E D GDY + A+V V
Sbjct: 59 RIHKLVIANALTE-DEGDYVFAPDAYNVTLP--AKVHVIS 95
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S + ++ L+ L T V + + E+S +I KW K G ++ES R + +G
Sbjct: 2 SSGSSGLKILTPLTDQT-VNLGKEICLKCEIS-ENIPGKWTKNGLPVQESDRLKVVQKGR 59
Query: 360 QRKLVIKRVTQDDE 373
KLVI +DE
Sbjct: 60 IHKLVIANALTEDE 73
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-09
Identities = 8/62 (12%), Positives = 18/62 (29%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
W KNG + +S ++ + I + + D Y + + +
Sbjct: 35 IPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
Query: 598 VL 599
Sbjct: 95 SG 96
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL--ESHDKD 86
+S V T PG D+S+ + W+ P + + +TGY + E +++
Sbjct: 3 SGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEK-NGILTGYRISWEEYNRT 61
Query: 87 EFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
V + + + Y VT LT Y VAA+ + G G S +T
Sbjct: 62 NTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ GY I +E N L TL+Y V L + Y +V A S G G
Sbjct: 47 ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQ 101
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-16
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-------ITYEN 194
+ +I PL+D V + VS + W K+ + + +
Sbjct: 6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ + GRY + L+V+ K+
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKES----ARHIIT 355
S S+ V ++ L + VE+S QV W+K G E+ AR+
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVG-DRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 356 SRGTQRKLVIKRVTQDDE 373
G + L+ V Q+D
Sbjct: 62 KDGKRHILIFSDVVQEDR 79
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-13
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKR 720
GS G + L + E++ V + + +V + ++W +N L + R
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR 59
Query: 721 EIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756
DG+ IL + E D G Y+V+ A
Sbjct: 60 FKKDGKRHILIFSDVVQE-DRGRYQVITNGGQCEAE 94
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-07
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 536 PRPEISWMKNGAEITDSKAC----RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
++ WMKNG E+T + R D + + VV+ D Y V
Sbjct: 35 EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94
Query: 592 L 592
L
Sbjct: 95 L 95
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 4e-16
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVARFTV 201
Q ++ A +S TL C V+ ++ WYKD + + + R V
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
++ G Y+C EAG + S L V G+
Sbjct: 71 QQAGQAEAGEYSC----EAGGQQLSFRLQVAGQ 99
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-14
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 299 ESKSTPAVEFLSKLP---SVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIIT 355
S S+ V F + P V AT E++ +V W K GK++ S++ +
Sbjct: 2 SSGSSGKVVFAKEQPAHREVQ-AEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVE 60
Query: 356 SRGTQRKLVIKRVTQDDE 373
+ G R+LV+++ Q +
Sbjct: 61 AVGCTRRLVVQQAGQAEA 78
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
E + + L +V A + W+++ K L SS K R G L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 733 KEADSETDAGDYKVVATNELGSAT 756
++A + +AG+Y A + S
Sbjct: 71 QQA-GQAEAGEYSCEAGGQQLSFR 93
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
+ E++W K+G +++ S R+ T + + +A+ Y+ A S L ++
Sbjct: 38 AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQVA 97
Query: 596 LQVLG 600
Q G
Sbjct: 98 GQCFG 102
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 26 SNALGQASATTKV----TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL- 80
S +G S + TL PG P +SV L W+PP + + Y +
Sbjct: 6 SGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAP-NGIILAYQIT 64
Query: 81 --ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + ++ Y T L + Y+FR+ A G G A+
Sbjct: 65 HRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAA 114
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 8e-09
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 597 QVLGYIIQQQEKNSL-KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+L Y I + + V L PS QYT L+ +S Y F++ A+ G G A
Sbjct: 57 IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA 116
Query: 656 ELV 658
+V
Sbjct: 117 LVV 119
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 25 LSNALGQASATTKVTLLS-APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-- 81
+++ S+ +V A AP + + +S++ W PP +TGY +
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVT 56
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+K M + S++ V+ L +Y V A+ T +
Sbjct: 57 PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPA 103
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 21 YTISLS--NALGQ-ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
Y +S+ A VT L P + +++++T+ WR +TG
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK----TETITG 142
Query: 78 YVLESHDKDEFMVW-NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ +++ + I+ +Y +T L +Y + +N +
Sbjct: 143 FQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAI 202
Query: 137 KAPVD 141
AP +
Sbjct: 203 DAPSN 207
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
DY I L N ++S +A AP + + +S+ + W+PP+ + +TG
Sbjct: 177 DYKIYLYTLNDNARSSPVVIDAS-TAIDAPSNLRFLATTPNSLLVSWQPPR----ARITG 231
Query: 78 YVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
Y+++ V + T +T L EY V A+
Sbjct: 232 YIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 6/108 (5%)
Query: 560 DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFT 614
+S + + A + + T TSL +Q+ GY ++ K
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQV-TPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPM 64
Query: 615 KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662
K L P + V L ++Y V+A A + L
Sbjct: 65 KEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN 112
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
A SL +S ++ GYII+ ++ S V P + T+ L +EY
Sbjct: 212 ATTPNSLLVSWQPPRARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIY 271
Query: 641 VFAENSVGLGPEATTE 656
V A +
Sbjct: 272 VIALKNNQKSEPLIGR 287
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
T+A T++ +S + G+ + N + T+ P YT+ L+ +
Sbjct: 119 ARVTDA-TETTITISWRTKTETITGFQVDAVPANGQTPIQR-TIKPDVRSYTITGLQPGT 176
Query: 636 EYYFQVFAENSVGLGPEATT 655
+Y ++ N
Sbjct: 177 DYKIYLYTLNDNARSSPVVI 196
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-16
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRG 358
E P F K SV V A F+ E ++V+W + G +I S ++ + + G
Sbjct: 2 EPGKKPVSAFSKKPRSVE-VAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEG 60
Query: 359 TQRKLVIKRVTQDDE 373
T+ L ++ V D+
Sbjct: 61 TRHTLTVREVGPADQ 75
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-15
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 8/97 (8%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GR-NITYENN 195
P + + S E ++W + S I + + E
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
TV + +G Y AG+++ L V
Sbjct: 62 RHTLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 669 PGQAPL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
PG+ P+ F ++ V A+ + W R + +S K +G
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L ++E D G Y V+A GS+ + V
Sbjct: 62 RHTLTVREVGPA-DQGSYAVIA----GSSKVKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE 561
P ++P +S ++ S E + ++ W + G++I+ S + +
Sbjct: 3 PGKKPVSAFS-KKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASNKYGLATEG 60
Query: 562 ETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
T+ + V AD +Y V A ++ L
Sbjct: 61 TRHTLTVREVGPADQGSYAVIAGSSKVKFDL 91
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 5e-16
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + + P P + V + + + W PP + V GY++ +
Sbjct: 4 GSSGPENDLDESQVPDQPSSLH-VRPQTNCIIMSWTPPLNPN-IVVRGYIIGYGVGSPYA 61
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
++++ Y + +L + Y+ + A N G G Y P
Sbjct: 62 ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL----YESATTRSITSGP 113
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-09
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 587 AGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
+ + +S V GYII + + +D Y++E L S Y
Sbjct: 28 PQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPY--AETVRVDSKQRYYSIERLESSSHYV 85
Query: 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQA 672
+ A N+ G G T + P
Sbjct: 86 ISLKAFNNAGEGVPLYESAT---TRSITSGPSSG 116
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 6e-16
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 667 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREI 722
GS G LFIE+ + TVK I +AKVKA P+I WF+ L+S + +
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 723 ---------FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
+++ +A + AG+Y+ T + + + V P+I
Sbjct: 61 QLKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119
Query: 774 NS 775
+S
Sbjct: 120 DS 121
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 8e-13
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYKDDSLIK----GRNITYE 193
+ + E + +T V P IKW+K + G+++ +
Sbjct: 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63
Query: 194 NNVARFTVV--------NCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
R + V ++ G Y C+ T + S L V
Sbjct: 64 ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-06
Identities = 18/109 (16%), Positives = 26/109 (23%), Gaps = 13/109 (11%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP---RPEISWMKNGAEITDSKACRIF 558
I + + + V K +P I W K SKA +
Sbjct: 2 SSGSSGILFI-EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 559 IDEE---------TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+E T + I Y T S L+V
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 9e-16
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESA-RHIITSRGTQRK 362
+ F KL V VEL+ D +VKWLK G+EI+ S ++I S G +R
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 363 LVIKRVTQDDETDIGVLALNVKSVSKL 389
L I + + D+ + K ++L
Sbjct: 74 LTISQCSLADDAAYQCVVGGEKCSTEL 100
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-15
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 143 EAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVA 197
++ Q+ L+ + + + L ++ ++KW K+ I+
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
T+ CS + + Y C G + S L V+
Sbjct: 73 TLTISQCSLADDAAYQC----VVGGEKCSTELFVK 103
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-14
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 661 ATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 719
H + ++ F ++ E V + IRL ++ A + W +N + + S K
Sbjct: 4 HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSK 62
Query: 720 REIF-DGENIILELKEADSETDAGDYKVVATNELGSAT 756
G L + + D Y+ V E S
Sbjct: 63 YIFESIGAKRTLTISQCSLA-DDAAYQCVVGGEKCSTE 99
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-08
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
E+ W+KNG EI S + IF T+ I AD + Y ST L
Sbjct: 43 HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTEL 100
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 9e-04
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 405 YKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
K+ I+ T+ CS + + Y C E + E
Sbjct: 50 LKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-15
Identities = 40/237 (16%), Positives = 66/237 (27%), Gaps = 39/237 (16%)
Query: 5 SATLTI-VKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRS-----DS 58
SA ++ V ED+ T ++ VT+ S P P ++ +
Sbjct: 59 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP----APNVILTKPEVSEGT 114
Query: 59 SVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
VT+ H + + T + A
Sbjct: 115 EVTVKCE-----AHPRAKVT------LNGVPAQPLGPRAQLLLKATPEDNGRSFSCS-AT 162
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK--DSVAGFQSSVTLECVVSGVPTPDI 176
+ G + TR + V P + E + S T C G P P++
Sbjct: 163 LEVAGQLIHKNQTRELRVLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
K KD + + V + EG Y C+A + G T+ V
Sbjct: 218 KCLKDGTFP----------LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 1e-12
Identities = 35/288 (12%), Positives = 61/288 (21%), Gaps = 54/288 (18%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVE-VKYFGFPRPE--ISWMKNGAEITDSKACRIF 558
P P + + L V +Q V FP E + + +
Sbjct: 3 PATPPQLVS------PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT-YGN 55
Query: 559 IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQ--------QEKNS 610
+ T T S ++ + + E
Sbjct: 56 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE 115
Query: 611 LKFTKVATLDPS-------------TLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
+ A Q ++ + + F A V +
Sbjct: 116 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 175
Query: 658 VALATHATLGSPGQAPLFIERF--EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS 715
L P ER T E M + +P P + ++ L
Sbjct: 176 RELRVLY-------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228
Query: 716 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + + G Y A + G T V V
Sbjct: 229 IGESVTV--------------TRDLEGTYLCRARSTQGEVTREVTVNV 262
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 60/216 (27%)
Query: 428 VNCSESSEGRYTCKATNEAGTAETR---TMWPGLPLSIV--------------------- 463
V + R TC + ET T++ +++
Sbjct: 66 VTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR 125
Query: 464 VSLRKADTRVKPPMKRVLQKLAV-------------------PFSYKTRTTNLQIQSPPQ 504
+ +P R L +K +T L++ P+
Sbjct: 126 AKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS 564
+ SQ + +G P PE+ +K+G
Sbjct: 186 LDER----DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG-------------TFPLP 228
Query: 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+V R TY A + G + ++++ VL
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 7e-06
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNITYENNVAR 198
A P + P + + T+ C + G+ + D + +TY N+
Sbjct: 4 ATPPQLVSP-RVLEVD--TQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFS 59
Query: 199 FTV---VNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V + R TC + ET T+ +
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 96
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 1e-15
Identities = 23/130 (17%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDI 176
G + + V P P S + L C G P +
Sbjct: 84 VSEEGGQNYGEVSIH-LTVLVP-----PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSE-----------GRYTCKATNEAGTAET 225
W+KD + + + +S + G Y C+A N GTA
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 197
Query: 226 SCTLLVQGKE 235
S + E
Sbjct: 198 SEAAHMDAVE 207
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 3e-12
Identities = 36/245 (14%), Positives = 57/245 (23%), Gaps = 73/245 (29%)
Query: 531 KYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590
Y GF P + W T I + +S
Sbjct: 24 TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-------------------- 63
Query: 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
+ + F+ V D +YT G
Sbjct: 64 -----------------SSGITFSSVTRKD--NGEYTCM-------------VSEEGGQN 91
Query: 651 P-EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFR 708
E + L L P +V L SP WF+
Sbjct: 92 YGEVSIHLTVLV----------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK 141
Query: 709 NNKPLLSSPKK--------REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760
+ +L++ K D ++ L + D+G+Y A N G+A
Sbjct: 142 DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFDSGEYYCQAQNGYGTAMRSEA 200
Query: 761 VTVDV 765
+D
Sbjct: 201 AHMDA 205
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 4e-12
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD----SLIKGRNITYENNVARFT 200
+ D S+ L C SG +P ++W +L+ + R T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 201 VVNCS-------ESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ G YTC + E G ++ +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 9e-09
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 55/194 (28%)
Query: 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472
+T+ ++ F+ V + G YTC + E G
Sbjct: 57 ADRVTFSSSGITFSSV--TRKDNGEYTCMVSEEGGQNYGEV------------------- 95
Query: 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532
+ +L + PP +P I + S R + E
Sbjct: 96 ---------------------SIHLTVLVPPSKPTISVPSSVTIGNRAVLTCS---EHD- 130
Query: 533 FGFPRPEISWMKNGAEITDS--------KACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
G P E SW K+G + + ID ++ + V D+ Y A
Sbjct: 131 -GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Query: 585 NAAGSTSLDLSLQV 598
N G+ + +
Sbjct: 190 NGYGTAMRSEAAHM 203
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 15/111 (13%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN----------NKPLLSSPKKREI 722
+ V E +I+L +P + W N + + R
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
F + + D G+Y + + E G + + V PS
Sbjct: 62 FSSSG--ITFSSV-TRKDNGEYTCMVSEEGGQNYGEVSIHLTVL--VPPSK 107
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-15
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTV 201
I S++ L+CV G P P +W+K+ +T+E + V
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN-----ELPLTHETK-KLYMV 54
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+G Y C N+ + ++ ++
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 8e-11
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 11/97 (11%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G + + T+ L SP P WF+N PL KK +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------L 51
Query: 730 LELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765
+ D E G Y N+ S + + +D
Sbjct: 52 YMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDE 87
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-09
Identities = 21/94 (22%), Positives = 26/94 (27%), Gaps = 21/94 (22%)
Query: 497 LQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR 556
LQI P SQ+L S ++ G P P W KN +T
Sbjct: 4 LQICVEPT------------SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT------ 45
Query: 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590
E + V TY N S
Sbjct: 46 ---HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-15
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 144 APVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
V E + + VT C S P + W + + N + T+
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--LTIR 67
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
N S G Y C +N + + TL VQ
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-11
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 664 ATLGSPGQAPLFIERF-EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKRE 721
A L +P + + ++V+ + + K+ SPA ++VW R + L P +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSRAM 58
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
F+G IL ++ DAG Y +N A + V V
Sbjct: 59 DFNG---ILTIRNVQPS-DAGTYVCTGSNMFAMDQGTATLHVQV 98
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-08
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P + W + S+A + + I +V +D TY T +N
Sbjct: 37 KSPAYTLVWTRLHNGKLPSRA-----MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT 91
Query: 594 LSLQV 598
+L V
Sbjct: 92 ATLHV 96
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-15
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDS 183
G + + + V P P+I + A ++C + P PD I W ++
Sbjct: 1 GSSGSSGT-LTVNGP-----PIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53
Query: 184 LI----KGR-----NITYENNVARFTVVNCSES-SEGRYTCKATNEAGTAETSCTLLVQG 233
++ GR T E ++ T+ N + + Y C A N G+ L QG
Sbjct: 54 VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Query: 234 KEI 236
E+
Sbjct: 114 SEM 116
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 5e-13
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 7/109 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKR------EIF 723
P I + + ++ ++++P P I W L S R
Sbjct: 12 NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
+G L + Y A N GS T R+ ++ PS
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-09
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEIT 550
+ L + PP I S+ ++Q + +++ P P+ I+W +
Sbjct: 4 GSSGTLTVNGPPI---I----SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56
Query: 551 DSKACRIFIDEET------STIAIYSVVRADTST-YTVTATNAAGSTSLDLSLQVLG 600
+ R ++ + ST+ I ++VRAD T Y TA N+ GS + + L+ G
Sbjct: 57 SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-15
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-------KGRNITYENN- 195
P I E D + TL C G PTP I+WYK + + + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 196 --VARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQG 233
R S EG Y C A N G A + +L V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 9e-14
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
+L P +E + V + L K + P P+I W++ + + +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 724 -----DGENIILELKEA-DSETDAGDYKVVATNELGSA-THGARVTVDV 765
G L + S D G Y VA N LG A +H A + V
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 534 GFPRPEISWMKNGAEI---TDSKACRIFIDEETS----TIAIYSVVRADTSTYTVTATNA 586
G P P I W K G + D + S I R D Y A N
Sbjct: 35 GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94
Query: 587 AGS-TSLDLSLQVLG 600
G S D SL+V
Sbjct: 95 LGEAVSHDASLEVAA 109
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 6e-15
Identities = 33/249 (13%), Positives = 68/249 (27%), Gaps = 35/249 (14%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSN-ALGQASATTKVTLLSAPGAPDTPE------IVG 54
T+ + + E +D G Y + G + +T+++ P G
Sbjct: 88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKG 147
Query: 55 RSDSSVTL-----HWRPP-----QDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
+ D + + +PP + + + N T + Y +
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN--------PNGTVTVISRYRLV 199
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTL 164
H+ + + + V+ V E + + V L
Sbjct: 200 PSREAHQQSLACIVNYHMDRFKE---SLTLNVQYE----PEVTIEGFDGNWYLQRMDVKL 252
Query: 165 ECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
C P + W + + + + + S G Y C+ATN GT
Sbjct: 253 TCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPI--NYSLAGTYICEATNPIGTR 310
Query: 224 ETSCTLLVQ 232
+ +
Sbjct: 311 SGQVEVNIT 319
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 4e-07
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIILE 731
+ IE F+ ++ ++L K A+P + W N L + +N L
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG------VEAQNRTLF 286
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
K + + AG Y ATN +G+ + V +
Sbjct: 287 FKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 27/202 (13%), Positives = 51/202 (25%), Gaps = 53/202 (26%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
W K + + ++R+ +V E+ + C +
Sbjct: 170 WETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK-------- 221
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
+ L +Q P+ I+ D N Q
Sbjct: 222 ----------------------------------ESLTLNVQYEPE-VTIEGFDGNWYLQ 246
Query: 519 RLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577
R+ VK K + P E W + + + + +
Sbjct: 247 RMDVKLTCKAD----ANPPATEYHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAG 297
Query: 578 TYTVTATNAAGSTSLDLSLQVL 599
TY ATN G+ S + + +
Sbjct: 298 TYICEATNPIGTRSGQVEVNIT 319
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 6e-05
Identities = 16/115 (13%), Positives = 26/115 (22%), Gaps = 2/115 (1%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
P + NL + + P + K G P +SW
Sbjct: 115 PTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174
Query: 547 AEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ + R T S + A + L+L V
Sbjct: 175 KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ 229
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 16/135 (11%), Positives = 31/135 (22%), Gaps = 9/135 (6%)
Query: 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI 690
L D+ Y + E+ L +A QA L + ++ +
Sbjct: 101 LEDEGVYICEF--ATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAK-----KGQDDKVL 153
Query: 691 RLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK-EADSETDAGDYKVVA 748
P + W K + R +I + E +
Sbjct: 154 VATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 213
Query: 749 TNELGSATHGARVTV 763
+ + V
Sbjct: 214 NYHMDRFKESLTLNV 228
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 41/347 (11%), Positives = 84/347 (24%), Gaps = 84/347 (24%)
Query: 142 AEAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPD----IKWYKDDSLIKGRNITYENNV 196
P + DS+ GF + V L C + + W K + K Y ++
Sbjct: 11 GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIK 256
+ R + T T + +
Sbjct: 71 GV----SVLAPYRERVEFL-----RPSFTDGT------------------------IRLS 97
Query: 257 RVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVT 316
R+ +DE GV + ++ + + W +++ + +
Sbjct: 98 RLELEDE---GVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV 154
Query: 317 LVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQR---KLVIKRVTQDDE 373
P V W + K E + I GT + + + +
Sbjct: 155 ATC-------TSANGKPPSVVSWETRLKGEAEY-QEIRNPNGTVTVISRYRLVPSREAHQ 206
Query: 374 TDIGVLALN-VKSVSKLKWLD----------FGSGGWWFESK------------------ 404
+ + + + L+ G W+ +
Sbjct: 207 QSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYH 266
Query: 405 -YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
+ + + + + S G Y C+ATN GT
Sbjct: 267 WTTLNGSLPKGVEAQNRTLFFKGPI--NYSLAGTYICEATNPIGTRS 311
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 7e-15
Identities = 32/259 (12%), Positives = 67/259 (25%), Gaps = 27/259 (10%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTP-----EIVGR 55
+ ++ L D G+YT L N + + ++ ++P +
Sbjct: 74 ISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYI 133
Query: 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHE--YM 113
+ S V + + +N + + Y
Sbjct: 134 EYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYT 193
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV--AGFQSSVTLECVV--- 168
V T + VV +P +A PVI P V + + C V
Sbjct: 194 CVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFS 253
Query: 169 -SGVPTPDIKWYKDDSLI----------KGRNITYENN---VARFTVVNCSESSEGR-YT 213
++ W D + + + + ++ + R Y
Sbjct: 254 FLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYV 313
Query: 214 CKATNEAGTAETSCTLLVQ 232
C A + G + + +
Sbjct: 314 CHARSAKGEVAKAAKVKQK 332
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 65.7 bits (159), Expect = 2e-11
Identities = 46/380 (12%), Positives = 88/380 (23%), Gaps = 116/380 (30%)
Query: 400 WFESKYKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
W+ ++ D I+ E +V F + G YTC N ++
Sbjct: 52 WYWTRQDRDLEEPINFRLPENRISKEKDVLWFR--PTLLNDTGNYTCMLRNTTYCSKVA- 108
Query: 454 MWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513
PL +V ++ +K P+ ++ +I P
Sbjct: 109 ----FPLEVVQKDSCFNSPMKLPVHKLY----------IEYGIQRITCPN---------- 144
Query: 514 NLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR 573
V+ + +P I+W +I + + E ++ +
Sbjct: 145 --------------VDGYFPSSVKPTITWYMGCYKIQNFN----NVIPEGMNLSFLIALI 186
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633
++ YT T + L+ + + S K + E
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLT-----RTLTVKVVGSPKNAVPPVIHSPNDHVVYE---- 237
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM 693
G E +
Sbjct: 238 -------------KEPGEELL-----IPCTVYFSFLMD---------------------- 257
Query: 694 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI----------ILELKEADSETDAGD 743
+ W + K I + + IL +K+ SE
Sbjct: 258 ------SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRS 311
Query: 744 YKVVATNELGSATHGARVTV 763
Y A + G A+V
Sbjct: 312 YVCHARSAKGEVAKAAKVKQ 331
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-08
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 8/138 (5%)
Query: 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT---LECVVSGVPTPDIKWYK 180
T + VV+ +P+ K + +T ++ P I WY
Sbjct: 102 TYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161
Query: 181 DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT----NEAGTAETSCTLLVQGKEI 236
I+ N + + S+ G YTC T + T+ V G
Sbjct: 162 GCYKIQNFNNVIPEG-MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK 220
Query: 237 KESARHIITARGTQRKLV 254
I +
Sbjct: 221 NAVPPVIHSPNDHVVYEK 238
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-ITYENNVARFTV------ 201
EP + F+ + + + WY I + R +
Sbjct: 23 EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLW 82
Query: 202 -VNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+ G YTC N ++ + L V K+
Sbjct: 83 FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD 117
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 26/198 (13%)
Query: 605 QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664
+EK+ L F L D Y N+ + L + +
Sbjct: 75 SKEKDVLWFRPT-------------LLNDTGNYTCM--LRNTTY-CSKVAFPLEVVQKDS 118
Query: 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
SP + P+ E + + +S P+I W+ + I +
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRIT-CPNVDGYFPSSVKPTITWYMGCYKI--QNFNNVIPE 175
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVH 784
G N L A + G+Y V T T T+ V+ VG P + +H
Sbjct: 176 GMN--LSFLIALIS-NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPV----IH 228
Query: 785 YLAQSTEVDVTSTDEFHI 802
+ +E I
Sbjct: 229 SPNDHVVYEKEPGEELLI 246
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 5e-04
Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 6/103 (5%)
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-----LELKEADSETD 740
+ ++ S +++W+ + I L + D
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN-D 90
Query: 741 AGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHV 783
G+Y + N + + V + S + + ++
Sbjct: 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYI 133
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 136 VKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITY 192
+ V A V L C + P +++W KD + +
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDGEEVVESPALLLQK 63
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
E+ V R + G Y C E S T+ V ++
Sbjct: 64 EDTVRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPPVR 104
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 1e-13
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363
+ + S V V EL P +V+W K G+E+ ES ++ T R+L
Sbjct: 12 SWIVYPSGKVYVAAVRL-ERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70
Query: 364 VIKRVTQDDETDIGVLALNVKSVSKL 389
V+ V +D + + + +
Sbjct: 71 VLPAVQLEDSGEYLCEIDDESASFTV 96
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
++ ++ + L ++ P + W ++ + ++ SP
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK 63
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSAT 756
+ L L D+G+Y +E S T
Sbjct: 64 EDTVRRLVLPAV-QLEDSGEYLCEIDDESASFT 95
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-09
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
P E+ W K+G E+ +S A + ++ + + +V D+ Y + + S ++
Sbjct: 38 CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFTV 96
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGRN---ITYENNVA 197
+ I + LK S + ECV+S + W + + T +
Sbjct: 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY 65
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
V + S G A L+V+ +
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTSKAS----LIVRER 98
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-14
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELS--SPDIQVKWLKKGKEIKESARHIITSR 357
S S+ V +L ++ V +F+ LS S W GK + S+R T +
Sbjct: 3 SGSSGHVGITKRLKTME-VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ 61
Query: 358 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390
G + LV++ D ++ + S + L
Sbjct: 62 GRKYILVVREAAPSDAGEVVFSVRGLTSKASLI 94
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 667 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIF 723
GS G + +R + V E + + S + +W K + SS + +
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR 60
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSAT 756
G IL ++EA DAG+ A+
Sbjct: 61 QGRKYILVVREAAPS-DAGEVVFSVRGLTSKAS 92
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 8e-09
Identities = 6/59 (10%), Positives = 12/59 (20%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
W G + S + + + +D + SL
Sbjct: 35 ESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKASL 93
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-14
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGD-ATFQVELSSPDIQVKWLKKGKEIKESARHIITSR 357
S S+ V LS V+L + ELS D W K G++++ES ++
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMD 61
Query: 358 GTQRKLVIKRVTQDDE 373
G + +L++ D
Sbjct: 62 GRKHRLILPEAKVQDS 77
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 11/97 (11%)
Query: 142 AEAPVI---QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENN 195
+ PV + V L C +S WYKD ++ + +
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGR 63
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
R + G + C + VQ
Sbjct: 64 KHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQ 96
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 8e-12
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 668 SPGQAPLFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
S P+ I ++K T + L ++ + W+++ + + S D
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMD 61
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
G L L EA + D+G+++ VTV
Sbjct: 62 GRKHRLILPEAKVQ-DSGEFECRTEGVSAFFG----VTVQD 97
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-08
Identities = 6/57 (10%), Positives = 20/57 (35%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
+W K+G ++ +S+ + +D + + D+ + + +
Sbjct: 37 VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFGV 93
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-14
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVA 197
P A+ + ++ + + L C + I W +D L++
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEE- 61
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
V + + G Y C ++ +G+ T ++ V
Sbjct: 62 -VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-12
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
TL Q E V ++L +++ SI W R+ L+ S + R +
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE 60
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+E++++ D+G Y V ++ GS T V V
Sbjct: 61 ----EVEVRDSIPA-DSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-08
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595
I+W+++G ++ +S RI + + + AD+ Y ++ +GS + S
Sbjct: 36 DVQSINWLRDGVQLVESNRTRI----TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFS 91
Query: 596 LQV 598
+ V
Sbjct: 92 VNV 94
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 21 YTISL----SNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRP-PQDDGHSPV 75
Y I++ ++ G + + P T + L W P D + +
Sbjct: 170 YLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFI 229
Query: 76 TGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
Y + ++++ T Y ++ LT+ YM R+AA G T
Sbjct: 230 RNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 5/141 (3%)
Query: 20 DYTISLS--NALG--QASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPV 75
Y +L+ N +G A+ T P D+ + + W P++ +
Sbjct: 73 RYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYI 132
Query: 76 TGYVLESHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+ + S W + + T TY L Y+ V V A G G Y+
Sbjct: 133 LEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYL 192
Query: 135 VVKAPVDAEAPVIQEPLKDSV 155
P ++ K+
Sbjct: 193 KQAPPSKGPTVRTKKVGKNEA 213
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 9/117 (7%)
Query: 44 PGAPDTPEIV----GRSDSSVTLHWRP-PQDDGHSPVTGYVLESHDKDEFMVWNKIETTS 98
AP + + +V L W+ P + + + Y + +
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS--HLQNYTVNA 62
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
T V T Y+ + N +G A+ T + P + +
Sbjct: 63 TKLTVN--LTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNML 117
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ Y I + + +D S +YT+ +L + Y ++ A G
Sbjct: 229 IRNYTIFYRTIIGNETAV--NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKD 280
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 3e-14
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETT 97
+ S P V + S+TL W P + + + Y + + + +
Sbjct: 3 SGSSGPSTVPIMHQVSATMRSITLSWPQP-EQPNGIILDYEIRYYEKEHNEFNSSMARSQ 61
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ T + L Y+ +V A G G S
Sbjct: 62 TNTARIDGLRPGMVYVVQVRARTVAGYGKFS 92
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+L Y I+ EK + T ++ LR Y QV A G G
Sbjct: 37 IILDYEIRYYEKEH-NEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGK 90
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-14
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFT 200
+ ++ + + L C + I W +D L +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE--VE 57
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V + + G Y C ++ +G+ T ++ V
Sbjct: 58 VQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G + E V ++L +++ SI W R+ L S R GE
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN--RTRITGEE-- 55
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+E++++ D+G Y V ++ GS T V V
Sbjct: 56 VEVQDSVPA-DSGLYACVTSSPSGSDTTYFSVNV 88
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 8e-09
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
I+W+++G ++ +S RI + + V AD+ Y ++ +GS + S+
Sbjct: 32 QSINWLRDGVQLAESNRTRI----TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
Query: 598 V 598
V
Sbjct: 88 V 88
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
+ S T++ V +DSS+ L W P S + GY + + +
Sbjct: 82 DKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGI 138
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + ++++ Y VT L +Y V + G + T+ V P D
Sbjct: 139 PIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTD 192
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
DY IS+ G+ SA T +T +A P ++ + W PP +T
Sbjct: 162 DYDISVITLINGGE-SAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTN 217
Query: 78 YVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVV 135
+++ +E + I + +T L EY+ V++V +
Sbjct: 218 FLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG 277
Query: 136 VKAPVDAEAPVI 147
+ +P + I
Sbjct: 278 LDSPTGIDFSDI 289
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 4e-13
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+S + S + + +P + + +S T+HW P + +TGY
Sbjct: 254 YVVSVSSVYEQHE-STPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGY 308
Query: 79 VLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ +++ + + +T LT EY+ + A+N P
Sbjct: 309 RIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQ 363
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ ++ + S + + GY I+ ++ + + S T+ NL +
Sbjct: 284 IDFSDI-TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGT 342
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHAT 665
EY + A N P + ++ H
Sbjct: 343 EYVVSIVALNGREESPLLIGQQSTVSAHHH 372
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ TN G ++ ++ + + ++++ + + ++ PS + NL
Sbjct: 193 LRFTNI-GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 251
Query: 635 SEYYFQVFAENSVGLGPEATT 655
+EY V +
Sbjct: 252 TEYVVSVSSVYEQHESTPLRG 272
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 44 PGAPDTPEIVGRSDSS-VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK---IETTST 99
P + D+ +T+ W +TGY + + + + + +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQS 59
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L+ EY V V +T
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDT 91
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 586 AAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
+S+ L ++GY I +D S YTV L +Y
Sbjct: 106 DITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDI 165
Query: 640 QVFAENSVGLGPEATT 655
V + G T
Sbjct: 166 SVITLINGGESAPTTL 181
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKF-TKVATLDPSTLQYTVENLRD 633
+ + L +S + GY I N + + + T +NL
Sbjct: 9 LHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP 68
Query: 634 KSEYYFQVFAENSVGLGPEATT 655
EY V+ +
Sbjct: 69 GLEYNVSVYTVKDDKESVPISD 90
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-14
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWR-PPQDDGHSPVTGYVLE--SHDKDEFMVWNK--IETTS 98
P +++++ L W P + ++P+ G+ + D D + K +E
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
+ ++ L + Y ++ N G S+ +
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSSG 114
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ G+ I + +S + K ++ +++ +L+ ++ Y ++ N G
Sbjct: 40 PIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESE 96
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 4e-14
Identities = 30/249 (12%), Positives = 65/249 (26%), Gaps = 32/249 (12%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLL--------SAPGAPDTPEIVG 54
S+ LT+ D G+Y + +++ G + K + P + I
Sbjct: 48 TFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL 107
Query: 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
+ +T+ R P L D + + + Y+
Sbjct: 108 TEITEITIPCRV-----TDPQLVVTLHEKKGDVALPV----PYDHQRGFSGIFEDRSYIC 158
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
+ + Y + + + +V ++TL C+V G
Sbjct: 159 K--TTIGDREVDSDAYYVYRLQVSS-----INVSVNAVQTVVRQGENITLMCIVIGNEVV 211
Query: 175 DIKWYKDDSLIKGRNITYENNVARF--------TVVNCSESSEGRYTCKATNEAGTAETS 226
+ +W + + + + G YTC T +
Sbjct: 212 NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE 271
Query: 227 CTLLVQGKE 235
+ + E
Sbjct: 272 KAINITVVE 280
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 33/265 (12%), Positives = 65/265 (24%), Gaps = 49/265 (18%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG---STSLDL 594
+ W + E + + +S + + ++ DT Y T ++ G L
Sbjct: 26 APVVWERMSQEP-PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRL 84
Query: 595 SLQVLGY------------IIQQQEKNSLKFT-KVATLDPS----------------TLQ 625
+ V I E + +V Q
Sbjct: 85 YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQ 144
Query: 626 YTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVK 685
+ + Y + + L + + V+
Sbjct: 145 RGFSGIFEDRSYICK--TTIGDREVDSDAYYVYRL--------QVSSINVSVNAVQTVVR 194
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETD 740
+ I LM V + + W K + F + IL + A+ E D
Sbjct: 195 QGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELE-D 253
Query: 741 AGDYKVVATNELGSATHGARVTVDV 765
+G Y T + + + V
Sbjct: 254 SGTYTCNVTESVNDHQDEKAINITV 278
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 33/256 (12%), Positives = 68/256 (26%), Gaps = 65/256 (25%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW--- 455
W S+ + K ++ T+ + T+ N + G Y C + G
Sbjct: 30 WERMSQEPPQEMAKAQDGTF---SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
Query: 456 ----PGLPL---------------------------SIVVSLRKADTRVKPPMKRVLQKL 484
P + +VV+L + V P+ Q+
Sbjct: 87 FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRG 146
Query: 485 AVPFS----YKTRTTN------------LQIQSPPQQPAIKLVDSNLKS-QRLSVKSQWK 527
Y +TT ++Q ++ V + ++ + +++
Sbjct: 147 FSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITL----- 201
Query: 528 VEVKYFGFPRPEISWMKNGAEI-----TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
G W E + S + I S D+ TYT
Sbjct: 202 -MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCN 260
Query: 583 ATNAAGSTSLDLSLQV 598
T + + ++ +
Sbjct: 261 VTESVNDHQDEKAINI 276
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 31/259 (11%), Positives = 67/259 (25%), Gaps = 37/259 (14%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN--VARFTVVN 203
V+ P + V S+ L C S + W + ++ + T+ N
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTN 57
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLL---VQGKE----IKESARHIITARGTQRKLVIK 256
+ G Y C + G L V ++ I +
Sbjct: 58 LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPC 117
Query: 257 RVT----------QDDETDIGVLALNVKSVSKLKW------LARWTSDLESTAWFWWFES 300
RVT + + + V + + S + + ++ +
Sbjct: 118 RVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRL 177
Query: 301 KSTPAVEFLSKLPSVTLVPHLGDATFQVE-LSSPDIQVKWLKKGKEIKESARHIITSRGT 359
+ + ++ T+V + T + + + +W KE +
Sbjct: 178 QVSSINVSVN--AVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLD 235
Query: 360 QRK-----LVIKRVTQDDE 373
L I +D
Sbjct: 236 MPYHIRSILHIPSAELEDS 254
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-14
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEV 103
P ++ + ++ + W+PP P+ G ++ + + ++ T+ +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T L Y R+ A N P T
Sbjct: 60 TNLEPNTTYEIRIVARNGQQYSPPVSTT 87
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 589 STSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFA 643
T+ ++ L + G ++ KN L S T+ NL + Y ++ A
Sbjct: 15 LTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVA 74
Query: 644 ENSVGLGPEATTE 656
N P +T
Sbjct: 75 RNGQQYSPPVSTT 87
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 5e-14
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVARFTVV-------NCSESSEGR 211
+ V G P P ++W + S++ + + A TV + + G
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 212 YTCKATNEAGTAETSCTLLVQGKEIKESARHIIT 245
YT A N G A S + + I
Sbjct: 78 YTLLAANPFGQASASIMAAFMDNPFEFNPEDPIP 111
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 4e-12
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-------NI 728
+ I V PAPS+ W N L + F +
Sbjct: 6 SVQLHTAVEMHHWCIP--FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L L + + + G+Y ++A N G A+
Sbjct: 64 CLRLNQP-THVNNGNYTLLAANPFGQASASIMAAF 97
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 5e-12
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIA-------IYSVVRADTST 578
W + G P P + W+ NG+ + ++ E + + +
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 579 YTVTATNAAGSTSLDLSLQVLG 600
YT+ A N G S + +
Sbjct: 78 YTLLAANPFGQASASIMAAFMD 99
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
L + + + G+YT+ +N GQASA+ + P + + + ++S+
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSG 118
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 6e-14
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 44 PGAPDTPEIVGRSDS--SVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTS- 98
AP ++ R +V + W+PP + + +T Y+L W +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEA-NGKITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 99 -TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
T+++ L Y FR+ A N+ G GP S + +K
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ YI+ ++ + T+ L + + +L + YYF++ A NS G+GP
Sbjct: 40 KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGP 96
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 18/213 (8%)
Query: 21 YTISLSNALG-QASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYV 79
Y +S+ + S T++ A P ++ + W PP +T ++
Sbjct: 71 YNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFL 127
Query: 80 LE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
+ +E + I + +T L EY+ V++V + +
Sbjct: 128 VRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLD 187
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLE-CVVSGVPT-PDIKWYKDDSLIKGRNITYENN 195
+P + I +S T+ T I+ + + + R ++
Sbjct: 188 SPTGIDFSDITA----------NSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHS 237
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
T+ N + +E + A N +
Sbjct: 238 RNSITLTNLTPGTEYVVSIVALNGREESPLLIG 270
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+ N + S + P E+V + +S+ + W P V Y
Sbjct: 252 YVVSIVALNGREE-SPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPA----VTVRYY 306
Query: 79 VLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ + + + + +T ++ L +Y V AV G PAS +
Sbjct: 307 RITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINY 366
Query: 137 K 137
+
Sbjct: 367 R 367
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+S + S + + +P + + +S T+HW P+ + +TGY
Sbjct: 162 YVVSVSSVYEQHE-STPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITGY 216
Query: 79 VLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ +++ + + +T LT EY+ + A+N P + V
Sbjct: 217 RIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVS 276
Query: 137 KAPVD 141
P D
Sbjct: 277 DVPRD 281
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 44 PGAPDTPEIVGRSDSS-VTLHWRPPQDDGHSPVTGYVLE---SHDKDEFMVWNKIETTST 99
P + D+ +T+ W +TGY + ++ + + + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ L+ EY V V +T V P D
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTD 100
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S + V Y I E + T+ S T+ L+ +Y
Sbjct: 286 AATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTIT 345
Query: 641 VFAENSVGLGPEATTELVALAT 662
V+A G P ++ +
Sbjct: 346 VYAVTGRGDSPASSKPISINYR 367
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
+ S + + GY I+ ++ + + S T+ NL +EY
Sbjct: 196 DITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 255
Query: 641 VFAENSVGLGPEATT 655
+ A N P
Sbjct: 256 IVALNGREESPLLIG 270
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ TN G ++ ++ + + ++++ + + ++ PS + NL
Sbjct: 101 LRFTNI-GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 159
Query: 635 SEYYFQVFAENSVGLGPEATT 655
+EY V +
Sbjct: 160 TEYVVSVSSVYEQHESTPLRG 180
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 581 VTATNAAGSTSLDLS------LQVLGYIIQQQEKNSLKFTKV-ATLDPSTLQYTVENLRD 633
+ + L +S + GY I N + + + T +NL
Sbjct: 8 LHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP 67
Query: 634 KSEYYFQVFAENSVGLGPEATT 655
EY V+ +
Sbjct: 68 GLEYNVSVYTVKDDKESVPISD 89
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-14
Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 29/198 (14%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPV--------TGYVLESHDKDEFMVWNKIETTS 98
+ E G + L Q + + + E
Sbjct: 4 TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF 63
Query: 99 TTY--EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA 156
++ L T + +++V+ + G + ++ V P I S
Sbjct: 64 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD-LKIQERV--SKPKI------SWT 114
Query: 157 GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 216
+ TL C V P++ Y+D +K R + S ++ C A
Sbjct: 115 C--INTTLTCEVMNGTDPELNLYQDGKHLKLSQ--------RVITHKWTTSLSAKFKCTA 164
Query: 217 TNEAGTAETSCTLLVQGK 234
N+ + + K
Sbjct: 165 GNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 6e-07
Identities = 22/207 (10%), Positives = 47/207 (22%), Gaps = 69/207 (33%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCS-------ESSEGRYTCKATNEAGTAET 451
W S K + + T++ N + + Y + G
Sbjct: 35 WEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVL 94
Query: 452 RTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLV 511
+ +L+IQ +P I
Sbjct: 95 ----------------------------------------EKIFDLKIQERVSKPKISWT 114
Query: 512 DSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV 571
N L+ + PE++ ++G + S + +
Sbjct: 115 CINTT---LTCEVM--------NGTDPELNLYQDGKHLKLS-----------QRVITHKW 152
Query: 572 VRADTSTYTVTATNAAGSTSLDLSLQV 598
+ ++ + TA N S +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSC 179
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745
L +V P + +++ K L S + I + + + + +K
Sbjct: 114 TCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR--------VITHKW----TTSLSAKFK 161
Query: 746 VVATNELGSATHGARVTV 763
A N++ + V+
Sbjct: 162 CTAGNKVSKESSVEPVSC 179
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 8e-04
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 697 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756
K S I FR K ++F +N L++K ++ D YKV + G
Sbjct: 37 KTSDKKKIAQFRKEKETFKEKDTYKLF--KNGTLKIKHLKTD-DQDIYKVSIYDTKGKNV 93
Query: 757 HGARVTVDV-EKVGRPSINS 775
+ + E+V +P I+
Sbjct: 94 LEKIFDLKIQERVSKPKISW 113
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 8e-14
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPP---QDDGHSPVTGYVLE-SHDKDEFMVWNKIETTST 99
P + S ++ + W + + Y + + + T+
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+Y VT L Y F V + S
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS 93
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-13
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 21 YTISL--SNALGQASATTKVTLLSAPGAPDTP------EIVGRSDSSVTLHWRPPQDDGH 72
Y S+ + ++ + + P +P ++ ++W+PP + +
Sbjct: 77 YEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA-N 135
Query: 73 SPVTGYVLE--SHDKDEFMVWNK--IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+TGY++ + E W + T+++ +LT Y F++ A N+ G GP S
Sbjct: 136 GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMS 195
Query: 129 HNTRYVVVKAPVD 141
++ KA
Sbjct: 196 EAVQFRTPKAHHH 208
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 7e-07
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
++ GYII + + + + + L + ++ L + YYF++ A NS G+GP
Sbjct: 137 KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGP 193
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 581 VTATNAAGSTSLDLS------------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628
V A+ ++ ++ Y ++ + TK + +TL Y V
Sbjct: 11 VQAS-ILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN-TKYKNANATTLSYLV 68
Query: 629 ENLRDKSEYYFQVFAENSVGLGPE 652
L+ + Y F V
Sbjct: 69 TGLKPNTLYEFSVMVTKGRRSSTW 92
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 8e-14
Identities = 34/237 (14%), Positives = 65/237 (27%), Gaps = 21/237 (8%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
+ + + I D G+Y S ++ + V +
Sbjct: 43 TQTSTPSYRITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPL 100
Query: 61 TLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVN 120
L +D V Y ++ K ++ + K H + + +
Sbjct: 101 ALRCHAWKDKLVYNVLYY------RNGKAF--KFFHWNSNLTILKTNISHNGTYHCSGMG 152
Query: 121 AIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA-GFQSSVTLECVVSGVPTPDIKWY 179
+ V VK APV+ + + G + VTL C +
Sbjct: 153 KHRY---TSAGISVTVKELF--PAPVLNASVTSPLLEG--NLVTLSCETKLLLQRPGLQL 205
Query: 180 KDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET---SCTLLVQG 233
+ + + N + + ++ G Y C+A E G L V G
Sbjct: 206 YFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 37/258 (14%), Positives = 62/258 (24%), Gaps = 48/258 (18%)
Query: 533 FGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
P W NG S T + I S D+ Y + S
Sbjct: 26 LHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLSGRSDP 75
Query: 592 LDLSLQVLGYIIQQ-----QEKNSLKFTKVATLDPSTLQYT-------VENLRDKSEYYF 639
+ L + ++Q E L A D + S
Sbjct: 76 IQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTI 135
Query: 640 QV-----------FAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688
T+ +++ T+ AP+ + E
Sbjct: 136 LKTNISHNGTYHCSGMGKHR----YTSAGISV----TVKELFPAPVLNASVTS-PLLEGN 186
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748
+ L + K + + + S + E IL + DS G Y A
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDS----GLYWCEA 242
Query: 749 TNELGSATHG-ARVTVDV 765
E G+ + + V
Sbjct: 243 ATEDGNVLKRSPELELQV 260
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 161 SVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
+VTL C V +P +W+ + + + +Y + + S + G Y C+
Sbjct: 18 TVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSY-------RITSASVNDSGEYRCQRGLS 70
Query: 220 AGTAETSCTLL 230
+ +
Sbjct: 71 GRSDPIQLEIH 81
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 8e-07
Identities = 40/329 (12%), Positives = 79/329 (24%), Gaps = 109/329 (33%)
Query: 313 PSVTLVP-----HLGD-ATF--QVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
+TL P + T +V +W G + S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYR 51
Query: 365 IKRVTQDD------ETDIGVLALNVKSVSKLKWLDF------------------GSGG-- 398
I + +D + + + ++ WL
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL 111
Query: 399 ----WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
+ Y++ G+ + + + T++ + S G Y C +
Sbjct: 112 VYNVLY----YRN-----GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSA--- 159
Query: 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSN 514
+S+ V F ++ ++
Sbjct: 160 ----GISVTVK--------------------ELFPAPVLNASVTSPLLEGNLVTLSCETK 195
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
L QR ++ + S+ + +S I + R
Sbjct: 196 LLLQRPGLQLYF--------------SFYMGSKTLRGR--------NTSSEYQILTARRE 233
Query: 575 DTSTYTVTATNAAGST---SLDLSLQVLG 600
D+ Y A G+ S +L LQVLG
Sbjct: 234 DSGLYWCEAATEDGNVLKRSPELELQVLG 262
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 11/106 (10%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENII 729
+ + + E + L +++++RN K
Sbjct: 81 HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSN-------- 132
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
L + + + + G Y + + G VTV E P +N+
Sbjct: 133 LTILKT-NISHNGTYHCSGMGKHRYTSAGISVTV-KELFPAPVLNA 176
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 8e-14
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
+ + + ++V + + L W + Y L ++DE
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM---VLEPRV 64
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+TKL Y+ RV + +G GP S
Sbjct: 65 LLTKLQPDTTYIVRVRTLTPLGPGPFS 91
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 4e-04
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 15/84 (17%)
Query: 577 STYTVTATNAAGSTSLDLSLQ---------VLGYIIQQQEKNSLKFTKVATLDPSTLQYT 627
S ++ L+L+ L Y + ++ V +
Sbjct: 12 SGLSLKLVKKE-PRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV-----LEPRVL 65
Query: 628 VENLRDKSEYYFQVFAENSVGLGP 651
+ L+ + Y +V +G GP
Sbjct: 66 LTKLQPDTTYIVRVRTLTPLGPGP 89
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 8e-14
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
DY IS+ G+ S T +T +A P ++ + W PP +T
Sbjct: 89 DYDISVYTVKNGGE-STPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPS---IDLTN 144
Query: 78 YVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+++ +E + I + +T L EY+ V++V
Sbjct: 145 FLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL 197
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 1e-13
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDE 87
+S P V +DSS+ L W P S + GY + + +
Sbjct: 9 HHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNS---STIIGYRITVVAAGEGI 65
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + ++++ Y VT L +Y V V G + T+ V P D
Sbjct: 66 PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 589 STSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
+S+ L ++GY I +D S YTV L +Y V+
Sbjct: 36 DSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVY 95
Query: 643 AENSVGLGPEATT 655
+ G T
Sbjct: 96 TVKNGGESTPTTL 108
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 588 GSTSLDLS------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQV 641
G ++ ++ + + ++++ + + ++ PS + NL +EY V
Sbjct: 126 GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSV 185
Query: 642 FAENSVGLGPEATTE 656
+
Sbjct: 186 SSVYEQHESTPLRGR 200
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 9e-14
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 12/116 (10%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DI 176
T YV ++ P E +D + L C G P P D+
Sbjct: 87 VFLGHQT--FVSQPGYVGLEGL-----PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDL 139
Query: 177 KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
W +D + +N ++C+A N G + +
Sbjct: 140 LWLQDAVPLATAPGHGPQRSLHVPGLN----KTSSFSCEAHNAKGVTTSRTATITV 191
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-10
Identities = 34/232 (14%), Positives = 64/232 (27%), Gaps = 71/232 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
PE+ W+++G + + + + + + VV
Sbjct: 29 QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVS-------------------- 68
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
L+ T + L D +Y Q
Sbjct: 69 ----------------QLRITSL-------------QLSDTGQY--QCLVFLGHQ---TF 94
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKP 712
++ + P F+E E++TV L + + P P ++W ++ P
Sbjct: 95 VSQPGYVGLEG-------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP 147
Query: 713 LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 763
L ++P G L + + A N G T A +TV
Sbjct: 148 LATAPG-----HGPQRSLHV---PGLNKTSSFSCEAHNAKGVTTSRTATITV 191
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVAR--- 198
E+P + P + + TL C + P++ W +D +++ + T
Sbjct: 2 ESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 199 ---------FTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQGK 234
+ + S G+Y C T + + ++G
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 8e-10
Identities = 21/176 (11%), Positives = 55/176 (31%), Gaps = 62/176 (35%)
Query: 429 NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPF 488
+ S G+Y C T ++ +
Sbjct: 74 SLQLSDTGQYQCLVFLGHQTFVSQPGY--------------------------------- 100
Query: 489 SYKTRTTNLQIQSPP---QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMK 544
+ ++ P ++P + + ++ + + + + G P P ++ W++
Sbjct: 101 --------VGLEGLPYFLEEP---------EDRTVAANTPFNLSCQAQGPPEPVDLLWLQ 143
Query: 545 NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVL 599
+ + + ++ + + TS+++ A NA G T S ++ VL
Sbjct: 144 DAVPLATA-----PGHGPQRSLHVPGL--NKTSSFSCEAHNAKGVTTSRTATITVL 192
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 8e-09
Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENII 729
+ F+ T T L +++ P + W R+ + L + +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 730 LELKEADS--------ETDAGDYKVVATNELGSA-THGARVTVDV 765
+ S +D G Y+ + + + V ++
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 1e-13
Identities = 50/248 (20%), Positives = 75/248 (30%), Gaps = 26/248 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
E K E G YT S SN L +S V + P + G+ DS
Sbjct: 53 ENKKNEWIQEKAEATRTGTYTCSNSNGLT-SSIYVFVRDPAKLFLVGLP-LFGKEDSDAL 110
Query: 62 LHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI----ETTSTTYEVTKLTTKHEYMFRVA 117
+ V+ Y L D + T V + + A
Sbjct: 111 VRCPL---TD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCV-RCAA 165
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DI 176
+ GT S V +A PV+ P + + T+ C + V T +
Sbjct: 166 QRD--GTWLHSDKFTLKVREAI--KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNS 221
Query: 177 KWYKDDSLIKGRNITYENNVARF----------TVVNCSESSEGRYTCKATNEAGTAETS 226
W K + + N+ R T+ + G + C A N G+A +
Sbjct: 222 MWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVT 281
Query: 227 CTLLVQGK 234
TL V K
Sbjct: 282 TTLKVVEK 289
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-07
Identities = 41/323 (12%), Positives = 86/323 (26%), Gaps = 53/323 (16%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVA 197
+P + P I + + +++L C+ ++W N EN
Sbjct: 6 SPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYF----NEMVENKKN 57
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK-EIKESARHIITARGTQRKLVIK 256
+ + G YTC +N +S + V+ ++ + + +++
Sbjct: 58 EWIQEKAEATRTGTYTCSNSN---GLTSSIYVFVRDPAKLFLVGLPLFGKEDSD--ALVR 112
Query: 257 -RVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315
+T + + L + F + +V
Sbjct: 113 CPLTDPQVSQY-------------SLIECDGKSLPTDLTFVPNPKAG-------ITIKNV 152
Query: 316 TLVPHLGD----ATFQ-VELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ 370
H A L S +K + K I +++ T + +
Sbjct: 153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIP-----VVSVPETSHL-----LKK 202
Query: 371 DDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNC 430
D + +V + WL + + R T+ +
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQ---PQHIAQVKHNSWHRGDFNYERQETLTISSA 259
Query: 431 SESSEGRYTCKATNEAGTAETRT 453
G + C A N G+A T
Sbjct: 260 RVDDSGVFMCYANNTFGSANVTT 282
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 33/269 (12%), Positives = 65/269 (24%), Gaps = 56/269 (20%)
Query: 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST------- 590
+ W + + + T TYT + +N S+
Sbjct: 38 DFVRWTFKTYFNEMV-------ENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRD 90
Query: 591 -----------------SLDLSLQVLGY---IIQQQEKNSLKF----TKVATLDPSTLQY 626
+ + E + T V
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIK 150
Query: 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686
V+ + A+ G ++ L + + P+ +K+
Sbjct: 151 NVKRAYHRLCVRCA--AQRD---GTWLHSDKFTLKVREAIKAI---PVVSVPETSHLLKK 202
Query: 687 KGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-------ILELKEADSE 738
T ++ +K + +W + N + + L + A
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA-RV 261
Query: 739 TDAGDYKVVATNELGSATHGARVTVDVEK 767
D+G + A N GSA + V VEK
Sbjct: 262 DDSGVFMCYANNTFGSANVTTTLKV-VEK 289
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 7e-06
Identities = 34/239 (14%), Positives = 60/239 (25%), Gaps = 54/239 (22%)
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTA---------------ETRTMWPGLP 459
N EN + + G YTC +N ++
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSD 108
Query: 460 LSI----------VVSLRKADTRVKPP-------MKRVLQKLAVPFSY------------ 490
+ SL + D + P K + V +Y
Sbjct: 109 ALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD 168
Query: 491 --KTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGA 547
+ ++ AI +V S L + V W+K
Sbjct: 169 GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNP 228
Query: 548 EITDSKACRIFID-------EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ + E T+ I S D+ + A N GS ++ +L+V+
Sbjct: 229 QPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-13
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 33 SATTKVTLLSAPGAPDTPEI--VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV 90
SA T + L P+ P V +S+ + W PP++ V GY +
Sbjct: 14 SAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQ 72
Query: 91 WNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
K++ Y + L Y+ + A N +G G Y P
Sbjct: 73 TIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL----YESAVTRPHTSGP 123
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 587 AGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
TS+ +S + V GY I + + +D YT+ENL S Y
Sbjct: 38 PLVTSIVVSWTPPENQNIVVRGYAIGYGIGSP--HAQTIKVDYKQRYYTIENLDPSSHYV 95
Query: 639 FQVFAENSVGLGPEATTE 656
+ A N+VG G
Sbjct: 96 ITLKAFNNVGEGIPLYES 113
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 2e-13
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 120 NAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY 179
+G + ++ V P + + S S +T+ C V+ P P ++W
Sbjct: 86 MKLGETEVTKQE-HLSVVKP-----LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139
Query: 180 KDDSLI------KGRNITYENNVARFTVV-NCSESSEGRYTCKATNEAGTAE 224
+ + G + ++ V + + TC N+ A
Sbjct: 140 MPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 5e-08
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN----KPLLSSPKKREIFDGENI 728
E + + + V A P P + W P ++ + DG
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
+ + V N+ A HG V+ + +
Sbjct: 165 VAVDLSL-PKPWHLPVTCVGKNDKEEA-HGVYVSGYLSQ 201
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 28/208 (13%), Positives = 52/208 (25%), Gaps = 55/208 (26%)
Query: 401 FESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPL 460
+ + + +I N V + S +G Y C+
Sbjct: 45 HDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE------------ 92
Query: 461 SIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520
T+ +L + P + + + +
Sbjct: 93 ------------------------------VTKQEHLSVVKPLT------LSVHSERSQF 116
Query: 521 SVKSQWKVEVKYFGFPRPEISW-MKNGAEITDSKA-CRIFIDEETS--TIAIYSVVRADT 576
S V FP P + W M G E + A + +++ S S+ +
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 577 STYTVTATNAAGSTSLDLSLQVLGYIIQ 604
T N + V GY+ Q
Sbjct: 177 LPVTCVGKNDKEEAH---GVYVSGYLSQ 201
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 8e-06
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 23/96 (23%)
Query: 160 SSVTLECV---VSGVPTPDIKWYK----DDSLIKGR----------------NITYENNV 196
VTL VS P ++ W+K ++ ++ GR +I N
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V + S +G Y C+ L V
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 2e-13
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 6/110 (5%)
Query: 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDD 182
G ++ P P + + + L C ++ +I WYK++
Sbjct: 113 NGDCVQGIVRSHIRKP-----PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNN 167
Query: 183 SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ Y + + N GRY C + + +
Sbjct: 168 QELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC 217
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-13
Identities = 30/246 (12%), Positives = 62/246 (25%), Gaps = 26/246 (10%)
Query: 7 TLTIVKFEDKDLG-DYTISLSNALGQA-SATTKVTLLSAPG-APDTPEIVGRSDSSVTLH 63
L I + D Y +++ G + + P P+T E+ + L+
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVWN-KIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122
+ + E ++ K + + + +
Sbjct: 150 CGIL--YAKHYNN--ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDD 205
Query: 123 GTGPASHNTRYVV---VKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD---- 175
V D +I +P + G + C
Sbjct: 206 VRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG--EPANITCTAVSTSLLVDDVL 263
Query: 176 IKWYKDDSLIKGRNITYENNVAR--------FTVVNCSESSEGR-YTCKATNEAGTAETS 226
I W I G + + + N +E G YTC+ N +
Sbjct: 264 IDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLT 323
Query: 227 CTLLVQ 232
T++++
Sbjct: 324 TTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 4e-10
Identities = 25/204 (12%), Positives = 49/204 (24%), Gaps = 49/204 (24%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
YK++ + Y + + N GRY C + + IVV
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN---------DIVV 214
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+R L + ++D + +++
Sbjct: 215 ---------------------------SRCKILTVIPSQDHRFKLILDPKIN---VTIGE 244
Query: 525 QWKVEVKYFGFPRPE----ISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSVVRAD 575
+ I W I I +T+ +V
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304
Query: 576 T-STYTVTATNAAGSTSLDLSLQV 598
+TYT N +L ++ +
Sbjct: 305 IGNTYTCRGHNYYFDKTLTTTVVL 328
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 23/195 (11%), Positives = 38/195 (19%), Gaps = 52/195 (26%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
K + N +N S S RY C T + G +
Sbjct: 73 EKIGKTRRPLNRRVKNGDLWIANYT-SNDSHRRYLCTVTTKNGDCVQGIV---------- 121
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
I+ PP K
Sbjct: 122 -------------------------------RSHIRKPPS------CIPETYELGTHDKY 144
Query: 525 QWKVEVKYF-GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
+ I+W KN E+ + + I++ D+ Y
Sbjct: 145 GIDLYCGILYAKHYNNITWYKNNQELIID---GTKYSQSGQNLIIHNPELEDSGRYDCYV 201
Query: 584 TNAAGSTSLDLSLQV 598
D+ +
Sbjct: 202 HYDDVRIKNDIVVSR 216
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 31/292 (10%), Positives = 55/292 (18%), Gaps = 79/292 (27%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPT---------PDIKWYKDDSLIKGRNITYENN 195
+ + +A + +C + W K + N +N
Sbjct: 30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG 89
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV------------------------ 231
S S RY C T + G
Sbjct: 90 DLWIANYT-SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDL 148
Query: 232 -----------------QGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV---LAL 271
+E+ + L+I +D G
Sbjct: 149 YCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---LIIHNPELEDS---GRYDCYVH 202
Query: 272 NVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQ---- 327
K + L + F L V A
Sbjct: 203 YDDVRIKNDIVVSRCKIL---------TVIPSQDHRFKLILDPKINVTIGEPANITCTAV 253
Query: 328 -VELSSPDIQVKWLKKGKEIKESARHIITSRGTQRK-----LVIKRVTQDDE 373
L D+ + W I + + + L + VT++
Sbjct: 254 STSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYI 305
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-08
Identities = 26/277 (9%), Positives = 53/277 (19%), Gaps = 53/277 (19%)
Query: 532 YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT-STYTVTATNAAGST 590
+ ++W K G + + I + D+ Y T T G
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLN-----RRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDC 116
Query: 591 ---SLDLSLQVLGYIIQQQEKNSLKFTKVAT----------------------LDPSTLQ 625
+ ++ I + + L +
Sbjct: 117 VQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTK 176
Query: 626 YTVEN---------LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676
Y+ L D Y V+ T+ +
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCY--VHYDDVRIKNDIV--VSRCKILTVIPSQDHRFKL 232
Query: 677 ERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRNNKPLLSSPKKREIF-----DGEN 727
+ V + ++ I W + ++
Sbjct: 233 ILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITE 292
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + E Y N T V ++
Sbjct: 293 ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 3e-07
Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 15/125 (12%)
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPA 701
G + P I E +K I L + A
Sbjct: 109 VTTKNGDCVQGIVRSHIRK----------PPSCIPETYELGTHDKYGIDLYCGILYAKHY 158
Query: 702 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761
+I W++NN+ L+ K II D+G Y + + V
Sbjct: 159 NNITWYKNNQELIIDGTKYSQSGQNLIIHNP----ELEDSGRYDCYVHYDDVRIKNDIVV 214
Query: 762 TVDVE 766
+
Sbjct: 215 SRCKI 219
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 2/112 (1%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
G + + P + SD+ + W PP+ + Y L + +
Sbjct: 1 GSPGISGGGGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTT 60
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+++ + Y V L Y ++AV AS + AP +
Sbjct: 61 F--RLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKN 110
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
+Y + +S Q S + + +P + S++S++L W P+
Sbjct: 172 EYGVGISAVMNSKQ-SIPATMNARTELDSPRDLMVTASSETSISLIWTKAS----GPIDH 226
Query: 78 YVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
Y + + T+Y +T L EY+ + A S
Sbjct: 227 YRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 21 YTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
Y +S+S + S + + AP + R+ +S+ L W + + Y
Sbjct: 81 YEVSISAVRGTNE-SDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVY 139
Query: 79 VLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+ ++ ++ K +T +T L EY ++AV + + +
Sbjct: 140 STLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDS 199
Query: 139 PVD 141
P D
Sbjct: 200 PRD 202
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ T A+ TS+ L + Y I + + T+ YT+ +L +
Sbjct: 203 LMVT-ASSETSISLIWTKASGPIDHYRITFTPSSG--ISSEVTVPRDRTSYTLTDLEPGA 259
Query: 636 EYYFQVFAENSVGLGPEATTE 656
EY + AE E+T +
Sbjct: 260 EYIISITAERGRQQSLESTVD 280
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
T + +V +++ L P QY+V+ LR S Y +
Sbjct: 27 SDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSIS 86
Query: 643 AENSVGLGPEATTELVA 659
A ++T+
Sbjct: 87 AVRGTNESDASSTQFTT 103
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 566 IAIYSVVRADTSTYTVTAT---------NAAGSTSLDLS-----LQVLGYIIQQQEKNSL 611
A+ +D S+ T + +TSLDL + Y +
Sbjct: 86 SAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGE 145
Query: 612 KFTK--VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
++ + V T + T+ +L +EY + A + AT
Sbjct: 146 QYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATM 191
|
| >1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-13
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQ-DDGHSPVTGYVLESHDKDE 87
+S T V T + P P + +D+ V L+W + + S VTGY + +
Sbjct: 3 SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V + T T+ E+ L K +Y+ V A G G +S
Sbjct: 63 NNVQV-LNTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSS 101
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 2e-13
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 22/127 (17%)
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
A N +G S V V P ++ A + V G P P ++
Sbjct: 232 AENDVGRAEVSVQ---VNVSFP---------ASVQLHTAVEMHHWCIPFSVDGQPAPSLR 279
Query: 178 WYKDDSLIKGRNITYENNVAR----------FTVVNCSESSEGRYTCKATNEAGTAETSC 227
W + S++ + + + + + + G YT A N G A S
Sbjct: 280 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 339
Query: 228 TLLVQGK 234
Sbjct: 340 MAAFMDN 346
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 5e-13
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
P ++ + ++ V L C V G W + + + +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 203 --NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
S+ + TC A N+ G AE S + V
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 248
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 5e-12
Identities = 25/176 (14%), Positives = 45/176 (25%), Gaps = 59/176 (33%)
Query: 431 SESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSY 490
S+ + TC A N+ G AE
Sbjct: 221 SDLNRKNVTCWAENDVGRAEV--------------------------------------- 241
Query: 491 KTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550
+ + + P V+ + SV G P P + W+ NG+ +
Sbjct: 242 ---SVQVNVSFPASVQLHTAVEMHHWCIPFSVD----------GQPAPSLRWLFNGSVLN 288
Query: 551 DSKACRIFIDE-------ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
++ E + + + YT+ A N G S + +
Sbjct: 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-09
Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 25/151 (16%)
Query: 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
V + ++ +AEN VG E + ++ F
Sbjct: 211 SLGLTLANVTSDLNRKNV--TCWAENDVG-RAEVSVQV--------------NVSFPASV 253
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-------IFDGENIILEL 732
+ T E + V PAPS+ W N L + + L L
Sbjct: 254 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + + G+Y ++A N G A+
Sbjct: 314 NQP-THVNNGNYTLLAANPFGQASASIMAAF 343
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 3e-09
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
P + +V + L +V+ W ++ K ++ L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL--PSLGL 214
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L S+ + + A N++G A +V V
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-06
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G + W+ E + + + T+ + T A N G +
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDLNRKNVTCWAENDVGRAEVS 242
Query: 594 LSLQV 598
+ + V
Sbjct: 243 VQVNV 247
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P E+V + +S+ + W V Y + D + + +
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWDAYYSSW-QNVKYYRITYGETGGDSPVQEFTVPGYYS 64
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
T ++ L +Y V A + G ++ + +
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-08
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
A TSL +S V Y I E + T+ T+ L+ +Y
Sbjct: 18 DATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDY 77
Query: 638 YFQVFAENSVGLGPEATT 655
V+A ++ G E +
Sbjct: 78 TITVYAYDTFFPGYEPNS 95
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-13
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 27 NALGQASATTKVTLLSAPGAPDTP----EIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLE 81
N G +T +T+++ P P + + S+ + W PP + +TGY +
Sbjct: 8 NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIR 67
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+E + Y T L +Y F+V+A+ GTGP S+
Sbjct: 68 HRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN 115
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-06
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
+ GY I+ ++ ++ TL+P+ L Y L S+Y FQV A G GP
Sbjct: 60 FITGYKIRHRKTTRRG--EMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPP 113
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 4e-13
Identities = 30/166 (18%), Positives = 46/166 (27%), Gaps = 11/166 (6%)
Query: 70 DGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
G Y + + F N +++ + VT L ++ A G A+
Sbjct: 56 SGDKIYDNYYPDLKGRVHF-TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGV--ANK 112
Query: 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDD-SLIKG 187
V P D + L+C G +W K S
Sbjct: 113 KFLLTV------LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP 166
Query: 188 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
E +V N S G Y+C N G+ + L V
Sbjct: 167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 1e-09
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 19/140 (13%)
Query: 627 TVENLR--DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTV 684
V NL+ D Y Q + + G+ L L P F + +
Sbjct: 87 NVTNLQLSDIGTY--QCKVKKAPGVA-NKKFLLTVLV----------KPSGTRCFVDGSE 133
Query: 685 KEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGD 743
+ +L + K S W + + + + + ++ +K A S +G
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT--PWLAEMTSPVISVKNA-SSEYSGT 190
Query: 744 YKVVATNELGSATHGARVTV 763
Y N +GS R+ V
Sbjct: 191 YSCTVQNRVGSDQCMLRLDV 210
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 2e-09
Identities = 29/178 (16%), Positives = 43/178 (24%), Gaps = 49/178 (27%)
Query: 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQ 482
A V N S G Y CK G A
Sbjct: 84 ASINVTNLQLSDIGTYQCKVKKAPGVAN-------------------------------- 111
Query: 483 KLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542
+ L + P + S +K + K G + W
Sbjct: 112 ----------KKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPK-----EGSLPLQFEW 156
Query: 543 MKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
K T + + I++ + + TY+ T N GS L L V+
Sbjct: 157 QKLSDSQTMPT--PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 24/119 (20%), Positives = 30/119 (25%), Gaps = 31/119 (26%)
Query: 147 IQEPLKDSVAGFQSSVTLECVVSGVPTP----DIKWYKDDSLIKG---RNITYENNV--- 196
I P + + L C + P DI+W S + I Y +
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 197 ---------------------ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
A V N S G Y CK G A L V K
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 6e-13
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
+ + P E+ ++++++L WR P + Y L +I
Sbjct: 1 INAGTDLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVD 56
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
ST++ + L EY + A + VV +P
Sbjct: 57 STSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKG 100
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 5e-12
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 20 DYTISLS--NALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77
+YTISL ++ TT + + G+P +++S T+ W PP+ S V
Sbjct: 70 EYTISLVAEKGRHKSKPTT-IKGSTVVGSPKGISFSDITENSATVSWTPPR----SRVDS 124
Query: 78 YVLESHDKDEFMVWNK-IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
Y + ++ + T ++ KL +Y + +V
Sbjct: 125 YRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI 179
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
T+L L + Y + + K + + + + L +EY
Sbjct: 17 DPTETTLSLRWRRPVAKFDRYRLTYVSPSGKK--NEMEIPVDSTSFILRGLDAGTEYTIS 74
Query: 641 VFAENSVGLGPEATTE 656
+ AE T +
Sbjct: 75 LVAEKGRHKSKPTTIK 90
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+V Y + V T+D S + + L +Y + + +
Sbjct: 121 RVDSYRVSYVPITG-GTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI 179
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 7e-13
Identities = 20/87 (22%), Positives = 31/87 (35%)
Query: 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS 208
P +A SV+L C +G +P W +T E + T+ S +
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGN 65
Query: 209 EGRYTCKATNEAGTAETSCTLLVQGKE 235
E Y C AT E+ E + +
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIYSFP 92
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 3e-08
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 25/155 (16%)
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
E T++T + ++ +E+ + A + + V + + + PL
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATC--ESRKLEKGIQ-VEIYSFPKDPEIHLSGPL--- 103
Query: 155 VAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNI-------TYENNVARFTVVNC 204
AG +T++C V+ V +I K D L+K + + E T
Sbjct: 104 EAG--KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 161
Query: 205 SESSEGRYTCKATNEAG-------TAETSCTLLVQ 232
E C+A + L V
Sbjct: 162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 6e-05
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
+ ++ L +P W L+ + +G L + S
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNPV-SFG 64
Query: 740 DAGDYKVVATNELGSATHGARVTVDV 765
+ Y AT E G +V +
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIYS 90
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 8e-13
Identities = 31/233 (13%), Positives = 59/233 (25%), Gaps = 59/233 (25%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
I+W K+G I E+ + S + Y +
Sbjct: 26 DAEAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKP--- 75
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
LQV + ++ + D + +
Sbjct: 76 --LQV--------------YYRMGSADDAKKD------------------AAKKDDAKKD 101
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
+ + +G Q P V GT ++ P I+W N+K +
Sbjct: 102 DAKKDGSDGNEEMGGITQTPY--------KVSISGT-TVILTCPQYPGSEILWQHNDKNI 152
Query: 714 LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG-----ARV 761
+ I E+ + + ++ E +G Y + ARV
Sbjct: 153 GGDEDDKNIGSDEDHLSLKEFSELE-QSGYYVCYPRGSKPEDANFYLYLRARV 204
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 1e-11
Identities = 26/223 (11%), Positives = 49/223 (21%), Gaps = 53/223 (23%)
Query: 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209
+K SV L C +I W+KD +I + ++ + + ++
Sbjct: 9 LVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLT----EDKKKWNLGSNAKDPR 61
Query: 210 GRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269
G Y CK + + + K+ A A+ K
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAK----------------- 104
Query: 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE 329
+ S E + V G
Sbjct: 105 -----------------------------KDGSDGNEEMGGITQTPYKVSISGTTVILTC 135
Query: 330 LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
P ++ W K I + + +
Sbjct: 136 PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQ 178
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-10
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVV 202
+ Q P K S++G ++V L C P +I W +D I G + ++ ++
Sbjct: 116 GITQTPYKVSISG--TTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 171
Query: 203 NCSESS-EGRYTCKATNEAGTAETS 226
SE G Y C
Sbjct: 172 EFSELEQSGYYVCYPRGSKPEDANF 196
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-09
Identities = 24/187 (12%), Positives = 51/187 (27%), Gaps = 27/187 (14%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+KD +I + ++ + + ++ G Y CK + PL +
Sbjct: 35 FKDGKMIGFLT----EDKKKWNLGSNAKDPRGMYQCKGSQNKSK----------PLQVYY 80
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+ AD K K+ K + ++ ++S+
Sbjct: 81 RMGSADDAKKDAAKKDDAKKD------------DAKKDGSDGNEEMGGITQTPYKVSISG 128
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
V + +P EI W N I + + +E + Y
Sbjct: 129 T-TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 585 NAAGSTS 591
+ +
Sbjct: 188 GSKPEDA 194
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 1e-12
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S+TL +P ++ G+NI +V G +TC
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPR----GKNIQGGKT---LSVSQLELQDSGTWTCTVLQN 165
Query: 220 AGTAETSCTLLVQG 233
E ++V
Sbjct: 166 QKKVEFKIDIVVLA 179
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 3e-07
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 21/102 (20%)
Query: 151 LKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLI--------------------KGRN 189
+K V G + +V L C S + W + + R
Sbjct: 1 MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60
Query: 190 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
++ + N Y C+ ++ + L
Sbjct: 61 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLT 102
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-06
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P + + + T+++ + D+ T+T T
Sbjct: 123 PGSSPSVQCRSPRGKNI----------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 594 LSLQVLGY 601
+ + VL +
Sbjct: 173 IDIVVLAF 180
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 11/81 (13%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742
+ + ++ L + +PS+ + L + + D+G
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQL-ELQDSG 156
Query: 743 DYKVVATNELGSATHGARVTV 763
+ + V
Sbjct: 157 TWTCTVLQNQKKVEFKIDIVV 177
|
| >1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-12
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 10/131 (7%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHS--------PVTGYVLE 81
G + + P +V L W PP + + GY +
Sbjct: 4 GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 82 SHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+ + + T + L +Y +V A G S + +
Sbjct: 64 ISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEP 123
Query: 141 DA-EAPVIQEP 150
D P I P
Sbjct: 124 DIPNPPRISGP 134
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-12
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 30 GQASATTKVTLLSAPGAPDTP-----EIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLE-- 81
G + ++ + + GAP + S +V + W P + GY +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 82 SHDKDEFMVWNK-IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + + ++ R+AAV G GP S
Sbjct: 61 WQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFS 108
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-05
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 581 VTATNAAGSTSLDLS----------LQVLGYIIQQQEKNSLKFTKVA-TLDPSTLQYTVE 629
VT S ++D+ +++GY I +++ ++ + + + +
Sbjct: 25 VTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARIS 84
Query: 630 NLRDKSEYYFQVFAENSVGLGP 651
+ ++ A G+GP
Sbjct: 85 VQVHNATCTVRIAAVTRGGVGP 106
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-12
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 30 GQASATTKV-TLLSAP-GAPDTPEIVGRSDSSVTLHWRPPQ-DDGHSPVTGYVLE--SHD 84
+S V TL P AP + R+ S+ +HW+PP + +TGY +
Sbjct: 3 SGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKAS 62
Query: 85 KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ + + T + + L EY FRVAA+ GTGPA+
Sbjct: 63 RKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATD 107
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
Q+ GY I+ ++ + + + L +E L +EY F+V A G GP
Sbjct: 50 QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPA 105
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 39 TLLSAP-GAPDTPEIVGRSDSSVTLHWRPPQDDGHS-PVTGYVLESHDKDEFMVWNKIET 96
+ S P G P + G + S+ L W PP + + Y + D + I T
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNI-T 61
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
T T + +T L Y +V A + G+GP S
Sbjct: 62 TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSP 94
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+++ Y + ++ NS + + T + ++T+ L+ + Y +V A S G GP
Sbjct: 40 RIISYTVVFRDINSQQELQNIT---TDTRFTLTGLKPDTTYDIKVRAWTSKGSGP 91
|
| >3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-12
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYE 102
AP ++ +D+S+T+ W PP + +TGY + + + +ST+
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+T LT EY+ V A+ P T
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPPLVGT 87
|
| >3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-09
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
TS+ +S + GY I N K T+ PS+ T+ L EY
Sbjct: 12 NVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVS 71
Query: 641 VFAENSVGLGPEATTELV 658
V+A P
Sbjct: 72 VYALKDNQESPPLVGTQT 89
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-12
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREIFDGENI 728
LF+ R ++ V G+I A+V + P + WF+ LSS + + ++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 729 ---------ILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + +A G Y+ + + +TV
Sbjct: 64 DRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 7e-12
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYKDDSLIK----GRNITYENNV 196
+ +D S+T V+G P +KW+K + G+++ ++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 197 ARF--------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
R + + + G Y C+ + + ++ L V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFP---RPEISWMKNGAEITDSKACRIFIDEE--------- 562
+ ++V + G P + W K SK + +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ I A T +Y + + +L V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 30 GQASATTKVTLLSAP--GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL---ESHD 84
+S + AP + S S +++HW V Y + +HD
Sbjct: 3 SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL---EKIVESYQIRYWAAHD 59
Query: 85 KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
K+E ++ + + + L +Y V A N+ G GP S KA
Sbjct: 60 KEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-05
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 580 TVTATNAAGSTSLDLSLQ------VLGYIIQQQEKNSLKFT-KVATLDPSTLQYTVENLR 632
V + S+ + + + V Y I+ + + + +ENL
Sbjct: 26 GVKVLS---SSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLL 82
Query: 633 DKSEYYFQVFAENSVGLGP 651
++Y+ +V A NS G GP
Sbjct: 83 PDTQYFIEVGACNSAGCGP 101
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-12
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P E+V + +S+ + W P V Y + + + + +S+
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T ++ L+ +Y V A G +
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFMYS 92
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 8e-08
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 580 TVTATNAAGSTSLDLS-------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632
V A TSL +S V Y I E + T+ S+ T+ L
Sbjct: 12 EVVAAT---PTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLS 68
Query: 633 DKSEYYFQVFAENSVGLGPEATTELVALATHAT 665
+Y V+A G +++ + T
Sbjct: 69 PGVDYTITVYAWGEDSAGYMFMYSPISI-NYRT 100
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 4e-12
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Query: 30 GQASATTKVTLLSAP-GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT---GYVLESHDK 85
G + T V LS P P + V + +V + W + + Y +
Sbjct: 4 GSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS 63
Query: 86 -DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ +TTS +Y T L Y F V + S
Sbjct: 64 FSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWS 107
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-06
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
V Y ++ + S K + D ++L YT L+ + Y F V +
Sbjct: 53 VRLYTVRWRTSFS-ASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSST 105
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 5e-12
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
+ S AP E + + L W P GY+L H +
Sbjct: 2 SSGSSGLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGG 57
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T++++ L Y R+ A+ P +
Sbjct: 58 ITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ A + L+ ++ GY++ T+ L + + L +
Sbjct: 14 LEAKEV-TPRTALLTWTEPPVRPAGYLLSFHTPGG--QTQEILLPGGITSHQLLGLFPST 70
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
Y ++ A L P +T + T G P
Sbjct: 71 SYNARLQAMWGQSLLPPVST------SFTTGGLRISGP 102
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 6e-12
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTY 101
AP E+ +D++ + W PP PV G+ L D + Y
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQY 58
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L EY + + + + T
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSSNPAKET 88
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-08
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
T+ ++ V G+ + K+ L QY++ NL+ +EY +
Sbjct: 15 TDTTALITWMPPSQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLI 74
Query: 643 AENSVGLGPEATTELV 658
+ A
Sbjct: 75 SRRGDMSSNPAKETFT 90
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 6e-12
Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 9/154 (5%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTST 99
S P +S + W PQ S ++ Y+L K+ W I
Sbjct: 1 SGP-VEVFITETPSQPNSHPIQWNAPQP---SHISKYILRWRPKNSVGRWKEATIPGHLN 56
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
+Y + L Y ++ ++ G + R+ + +
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEVT---RFDFTTTSTSTPVTSNTVTGETTPFSPL 113
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE 193
+ + + + W + G + YE
Sbjct: 114 VATSESVTEITASSFVVSWVSASDTVSGFRVEYE 147
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 2e-10
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFM 89
++ T T +P + + + SS + W D V+G+ +E ++ +
Sbjct: 100 SNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEP 155
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ + +T+T+ + L +Y+ V ++ G +T
Sbjct: 156 QYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 197
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 581 VTATNAAGSTSLDLSLQ------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+T T + S + + YI++ + KNS+ K AT+ YT++ L+
Sbjct: 8 ITETPS-QPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPG 66
Query: 635 SEYYFQVFAENSVGLGPEATTELV 658
Y Q+ + G +
Sbjct: 67 VVYEGQLISIQQYGHQEVTRFDFT 90
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 585 NAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
++S +S V G+ ++ + + L + + +L +Y
Sbjct: 121 TEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIV 180
Query: 640 QVFAENSVGLGPEATTE 656
V+ + G +
Sbjct: 181 NVYQISEDGEQSLILST 197
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 7e-12
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 42 SAP-GAPDTPEIVGRSDSSVTLHWR-PPQDDGHSPVTGYVL--ESHDKDEFMVWNK--IE 95
S P P SD+ + L W P + ++P+ G+ + D D + + +E
Sbjct: 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ + + L + Y ++ N G S+
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSN 95
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 597 QVLGYIIQQQEKNSLKFT--KVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+ G+ I + +S + K ++ S + + +L+ ++ Y ++ N G
Sbjct: 36 PIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESE 92
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-11
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 30 GQASATTKVTLLSAPGAPDTP----EIVGRSDSSVTLHWRPPQDDGHSPVTGYVL---ES 82
+S ++ AP + + S +++ + W+ P ++ + + GY +
Sbjct: 3 SGSSGPVLTQ--TSEQAPSSAPRDVQARMLSSTTILVQWKEP-EEPNGQIQGYRVYYTMD 59
Query: 83 HDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+ S + L + Y +V A +IG GP S + + +
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDP-STLQYTVENLRDKSEYYFQVFAENSVGLGP 651
Q+ GY + + + + T+ NL + Y +V A S+G GP
Sbjct: 48 QIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGP 103
|
| >2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW 91
+S ++ P P + ++ LHW+PPQ +PV Y ++ +
Sbjct: 2 SSGSS------GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQ 51
Query: 92 NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI 147
+ ++ Y + L Y V + + T ++AP D EA +
Sbjct: 52 AETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEV 107
|
| >2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 581 VTATNAAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ A N L + V Y IQ + A S + Y + +L +
Sbjct: 14 LRALNL-TEGFAVLHWKPPQNPVDTYDIQVTAPGAP--PLQAETPGSAVDYPLHDLVLHT 70
Query: 636 EYYFQVFAENSVGLGPEATTE 656
Y V L A+
Sbjct: 71 NYTATVRGLRGPNLTSPASIT 91
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 2e-11
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 32/191 (16%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRV 116
+ +V+L R P + G + K F + + + + +
Sbjct: 37 NLNVSLCARYP--EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCE------------ 82
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD- 175
A + + VV V+ P + L C
Sbjct: 83 -AKINDESYQSIMYIVVVVGYRIY----DVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 176 -IKWYKDDSLIKGRNITYENNVARF-----------TVVNCSESSEGRYTCKATNEAGTA 223
W S + + + + + T+ + S +G YTC A++ T
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 224 ETSCTLLVQGK 234
+ S + V
Sbjct: 198 KNSTFVRVHED 208
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 13/93 (13%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK----DDSLIKGRNITYENNVAR 198
+ Q + +V + C+ S + ++ + G I++++
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKG- 65
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
FT+ + S G C+A + ++ ++V
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 98
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 25/209 (11%), Positives = 58/209 (27%), Gaps = 55/209 (26%)
Query: 400 WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459
+ + G I++++ FT+ + S G C+A + ++
Sbjct: 42 LCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAGMVFCEAKINDESYQS-------- 92
Query: 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519
+ + + + L S+
Sbjct: 93 ----------------------------------IMYIVVVVGYRIYDVVLSPSH--GIE 116
Query: 520 LSVKSQWKVEVKYFGFP--RPEISWMKNGAEITDSKACRIFIDEET--------STIAIY 569
LSV + + + +W ++ K + ++ ST+ I
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 176
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQV 598
V R+D YT A++ + ++V
Sbjct: 177 GVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 30 GQASATTKVTLL-SAP-GAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVL-----E 81
+S T + S P P V ++V + W PP D + +T Y + +
Sbjct: 3 SGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVD 62
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
D+ +V I +++++ L EY V A +G GP S
Sbjct: 63 GEDRGRHVVDG-ISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPES 108
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 581 VTATNAAGSTSLDLS----------LQVLGYII--QQQEKNSLKFTKVATLDPSTLQYTV 628
V + GST++ +S + Y + + + V + + +
Sbjct: 25 VMCV-SMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDL 83
Query: 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
L +EY V A VG GPE + V + T P P
Sbjct: 84 VGLEKWTEYRVWVRAHTDVGPGPE--SSPVLVRTDE--DVPSGPP 124
|
| >2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 6e-11
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
+ + + + SS + W D V+G+ +E ++ + + + +T+T
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTAT 59
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ + L +Y+ V ++ G +T
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQSLILST 91
|
| >2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 9e-06
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
++S +S V G+ ++ + + L + + +L +Y
Sbjct: 16 EITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVN 75
Query: 641 VFAENSVGLGPEATT 655
V+ + G +
Sbjct: 76 VYQISEDGEQSLILS 90
|
| >2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 6e-11
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P + + S+ + W PP V Y L + +
Sbjct: 6 SGRSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARS 61
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ L +Y V+A+ A G A
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAV 90
|
| >2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
+ SL +S +VL Y + + L K ++ + T+ +L+ ++Y
Sbjct: 18 SETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVL 77
Query: 641 VFAENSVGLGPEATT 655
V A + G +
Sbjct: 78 VSAIYAAGRSEAVSA 92
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 8e-11
Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 26/151 (17%)
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
E + + + T + + P P ++
Sbjct: 45 ALPGQKTEFKVDSDDQWGEYSCVFLPEPMG------TANIQLHGP-----PRVKAVKSSE 93
Query: 155 VAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE---- 209
+ L C VP D WYK + + RF V + SE
Sbjct: 94 HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSES--RFFVSSSQGRSELHIE 151
Query: 210 --------GRYTCKATNEAGTAETSCTLLVQ 232
G+Y C T+ G+ + TL V+
Sbjct: 152 NLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-08
Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 23/153 (15%)
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE 677
L ++ V++ EY P T + P
Sbjct: 45 ALPGQKTEFKVDSDDQWGEY--SCVFLPE----PMGTANIQLHGP----------PRVKA 88
Query: 678 RFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLL------SSPKKREIFDGENIIL 730
+ + E T L+ K ++ P W++ S + L
Sbjct: 89 VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSEL 148
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
++ + E D G Y+ T+ GS + V
Sbjct: 149 HIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 7e-05
Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 47/179 (26%)
Query: 313 PSVTLVPHLGD-ATFQVELSS---PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368
T V LG L+ +WLK G +KE +K K
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVD 56
Query: 369 TQDDE---------TDIGVLALNVKS----VSKLKWLDFGSGG----------------- 398
+ D +G + + + G
Sbjct: 57 SDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDW 116
Query: 399 -WWFESKYKDDSLIKGRNITYE----NNVARFTVVNCS-ESSEGRYTCKATNEAGTAET 451
W+ + +D +L+ G + + + N + E+ G+Y C T+ G+ +
Sbjct: 117 AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 63/205 (30%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
K ++K F V S+ G Y+C E
Sbjct: 35 LKGGVVLK--EDALPGQKTEFKVD--SDDQWGEYSCVFLPEPMG---------------- 74
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
T N+Q+ PP+ V + S+ ++
Sbjct: 75 -----------------------------TANIQLHGPPR------VKAVKSSEHINEGE 99
Query: 525 QWKVEVKYFGFPRP-EISWMK----NGAEITDSKACRIFI--DEETSTIAIYSVVRA-DT 576
+ K P + +W K + + R F+ + S + I ++ D
Sbjct: 100 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159
Query: 577 STYTVTATNAAGSTSLDLSLQVLGY 601
Y T++ GS ++L+V +
Sbjct: 160 GQYRCNGTSSKGSDQAIITLRVRSH 184
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 18/97 (18%)
Query: 683 TVKEKG-TIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
TV++ G I L + S W + L E K DS+
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFK-VDSDD 59
Query: 740 DAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSI 776
G+Y V E + + G P + ++
Sbjct: 60 QWGEYSCVFLPE-----PMGTANIQLH--GPPRVKAV 89
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 9e-11
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKES---------- 349
S S+ ++ L V V DA F ++LS+ IQ W G+E+K +
Sbjct: 3 SGSSGTARLVAGLEDVQ-VYDGEDAVFSLDLST-IIQGTWFLNGEELKSNEPEGQVEPGA 60
Query: 350 ARHIITSRGTQRKLVIKRVT-QDDETDIGVLALNVKSVSKL 389
R+ I +G Q +L++ V QD +G V+ + L
Sbjct: 61 LRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAAL 101
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 5e-04
Identities = 11/106 (10%), Positives = 23/106 (21%), Gaps = 18/106 (16%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-------------GR 188
+ + L+D +S + W+ + +K
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEPGALRY 63
Query: 189 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
I + R + G + S L +Q
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALV---GFSCPGVQDSAALTIQES 106
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-----KGRNITYENNVA 197
A + + +V C G P P I W + GR + +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT- 442
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
V G Y C A N G L V+
Sbjct: 443 -LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 671 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
+ +R ++ V E T++ + + P P+I+W K L+S+ + +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
LE++ A D G Y +A N G+ + A + V
Sbjct: 443 LEVRYA-QVQDNGTYLCIAANAGGNDSMPAHLHV 475
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 531 KYFGFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
+ G P P I W+ ++ R+ + + T+ + D TY A NA G+
Sbjct: 408 RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTLEVRYAQVQDNGTYLCIAANAGGN 466
Query: 590 TSLDLSLQV 598
S+ L V
Sbjct: 467 DSMPAHLHV 475
|
| >2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 2e-10
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
+ + L++ D ++ + + + + +VT+
Sbjct: 111 EGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVT 170
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123
W P+ + GY+L K +I T+Y KL Y F++AA + G
Sbjct: 171 WTEPETTE--GLEGYILYKDGK----KVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNG 224
Query: 124 TGPAS 128
+
Sbjct: 225 EVSSK 229
|
| >3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TST 99
S P E+V + +S+ + W S V+ Y + + + +S+
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T ++ L+ +Y V A + S
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYS 87
|
| >3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S V Y I E + T+ S+ T+ L +Y
Sbjct: 15 AATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTIT 74
Query: 641 VFAENSVGLGPEATT 655
V+A S + +
Sbjct: 75 VYAYYSYYDLYYSYS 89
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 33 SATTKVTLLSAP--GAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGY------VLESH 83
S ++ ++ A G P + + S+ + W+ P ++ + + GY
Sbjct: 3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGS 62
Query: 84 DKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ +V K S Y + L +Y V A N GTGP+S
Sbjct: 63 NGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 597 QVLGYIIQQQEKNSL----KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
+ GY I +E + + YT++NL+ ++Y V A N G GP
Sbjct: 47 VIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS 106
|
| >2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-10
Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 12/113 (10%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFM 89
+S ++ P + + +V L W+P T Y++
Sbjct: 2 SSGSSG-----PLPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEE 51
Query: 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+++ + L +Y V ++ A P
Sbjct: 52 EEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPSSG 104
|
| >2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 6/75 (8%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 586 AAGSTSLDLS----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQV 641
A ++ L+ Y+++ + + + + ++ L +Y V
Sbjct: 19 AVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSV 78
Query: 642 FAENSVGLGPEATTE 656
+
Sbjct: 79 QSLRGPEGSEARGIR 93
|
| >2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-10
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTST 99
S P E+V + +S+ + W P V Y + + + + + +
Sbjct: 27 SVSDVPTKLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKS 82
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T ++ L +Y V AV + A
Sbjct: 83 TATISGLKPGVDYTITVYAVTGLRLMLAG 111
|
| >2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 586 AAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S + V Y I E + T+ S T+ L+ +Y
Sbjct: 39 AATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTIT 98
Query: 641 VFAENSVGLGPEATTELVALAT 662
V+A + L + +
Sbjct: 99 VYAVTGLRLMLAGSKPISINYR 120
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 6/97 (6%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARFTVVNCSESSEGRYTCK 215
++T+ C + + + +++ N G YTC
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVEDGGVYTCY 319
Query: 216 ATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRK 252
A E S L V + + A
Sbjct: 320 AMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSH 356
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
++ + ++ + + + V D YT A + +L
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNG-SVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLS 330
Query: 594 LSLQVLGY 601
+ L+V +
Sbjct: 331 VELKVYNF 338
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
T+ + K + +N+ +LS + N L K+
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKV-QVE 311
Query: 740 DAGDYKVVATNELGSATHGARVTV 763
D G Y A E + T + V
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKV 335
|
| >3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-10
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEV 103
AP + ++ S+ L W P + ++++ +K + + + +Y++
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T L EY + V
Sbjct: 60 TGLKPGTEYTVSIYGVKGGHRSNPLSAE 87
|
| >3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 586 AAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
SL LS ++IQ QE + T+ S Y + L+ +EY
Sbjct: 12 EVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVS 71
Query: 641 VFAENSVGLGPEATTE 656
++ + E
Sbjct: 72 IYGVKGGHRSNPLSAE 87
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 3e-10
Identities = 15/140 (10%), Positives = 32/140 (22%), Gaps = 24/140 (17%)
Query: 116 VAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD 175
A +I T V+ V + + +T+ C + +
Sbjct: 108 QVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN 167
Query: 176 IKWYKDDSLIK----------------GRNITYENNVARFTVV--------NCSESSEGR 211
+ WY + + G R + + GR
Sbjct: 168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGR 227
Query: 212 YTCKATNEAGTAETSCTLLV 231
C+ G + + +
Sbjct: 228 VWCELATGQGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-08
Identities = 35/252 (13%), Positives = 63/252 (25%), Gaps = 57/252 (22%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P ISW+K + +K + + + + ++ +Y + + G S+
Sbjct: 31 DTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL-----GFVESDSYKESFGDFLGRASVA 85
Query: 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+L+ T V D V ++E+ SV L
Sbjct: 86 -----------NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF---GLDAKSVVL---- 127
Query: 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713
G + + E V E I + ++ W+
Sbjct: 128 ----------KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF 177
Query: 714 LSSP----------------------KKREIFDGENIILELKEADSETDAGDYKVVATNE 751
+ R F G L ++ A TDAG
Sbjct: 178 ENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR-NLVIRAA-KITDAGRVWCELATG 235
Query: 752 LGSATHGARVTV 763
G T+
Sbjct: 236 QGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 20/246 (8%), Positives = 41/246 (16%), Gaps = 60/246 (24%)
Query: 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS 434
W G G +S + GR + +
Sbjct: 42 GASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQD 101
Query: 435 EGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494
GRY C+ + E + L + + V
Sbjct: 102 GGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTA------------------ 143
Query: 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554
+ ++ + + ++W + +
Sbjct: 144 ---------------------EVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 555 CRI---------------------FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+ I + D G D
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
Query: 594 LSLQVL 599
S +L
Sbjct: 243 RSSTIL 248
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-10
Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 25/154 (16%)
Query: 91 WNK----IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPV 146
W K E + T V T+++ ++V + + V
Sbjct: 40 WTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL-----IV 94
Query: 147 IQEPLKDSVAGFQSSVTLECVV---SGVPTPDI-----KWYKDDSLIKGRNITYENNVAR 198
+ Q+ V L V G D W K + +I
Sbjct: 95 NITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT--------QD 146
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
T+ + G YT K E+ + S + +
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIM 180
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-08
Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 37/254 (14%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP----DTPEIVGRSD 57
E ++ATLT+ ++ G Y +++ + S ++V L+ + S
Sbjct: 48 ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQ 107
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRV 116
+ V LH G +P Y L S K E ++ T+ + + T ++ V
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----DTTQDITIQEFTADKNGVYTV 162
Query: 117 AAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-------- 168
AS +T ++ A + V Q+ ++ + ++L VV
Sbjct: 163 KVWGESEDSAASAST--KIMLATM----NVDQDVVESKTVALGNEISLNYVVSEDIVGDS 216
Query: 169 SGVPTPDIK--WYKDD------SLIKGRNITYENNVA-----RFTVVNCSESSEGRYTCK 215
SG+P IK WY +LI + + + ++ C
Sbjct: 217 SGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCV 276
Query: 216 ATNEAGTAETSCTL 229
A + + +
Sbjct: 277 AKLYQQIEDETVEV 290
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 5e-08
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSG-VPTPD---IKWYKDDSLIKGRNITYENNVARF 199
A + TL V+G P P W KDD + N A
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATL 54
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
TV + + + G Y + + +
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFL 86
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 31/270 (11%), Positives = 72/270 (26%), Gaps = 53/270 (19%)
Query: 540 ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+W K+ ++ T+T+ + + +Y VT + TS++ + ++
Sbjct: 38 YTWTKDDQPHENN----------TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM 87
Query: 600 GYIIQQQEKNSLKFTKVATLDPSTLQ---------------------------------Y 626
+ V++ L
Sbjct: 88 EEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI 147
Query: 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686
T++ + V + + + LAT + E ++
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNV-DQDVVESKTVALGNEISLNY 206
Query: 687 KGTIRLMAKVKASPAPSIV--WFRNNK----PLLSSPKKREIFDGENIILE---LKEADS 737
+ ++ P +I W+ + P L + E +G +I + KE+ +
Sbjct: 207 VVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESAT 266
Query: 738 ETDAGDYKVVATNELGSATHGARVTVDVEK 767
D + VA V +
Sbjct: 267 YDDTAKFWCVAKLYQQIEDETVEVAASTSR 296
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 30/224 (13%), Positives = 53/224 (23%), Gaps = 56/224 (25%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
KDD + N A TV + + + G Y + + + ++
Sbjct: 41 TKDDQPHEN-------NTATLTVADATSENAGSYKVTVQDTDTMTSVES-----EVFLME 88
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
+P V + V + + P
Sbjct: 89 EAELIVNITEPQHFYVSSQTDVELHATVKFSGG---KTPADN------------------ 127
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
SW K I T I I YTV
Sbjct: 128 -----------YELHYSWSKGEDVID-----------TTQDITIQEFTADKNGVYTVKVW 165
Query: 585 NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628
+ ++ S +++ + + T VA + +L Y V
Sbjct: 166 GESEDSAASASTKIMLATMNVDQDVVESKT-VALGNEISLNYVV 208
|
| >1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-10
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEV 103
P S+ + W PQ V+ Y + S + ++ + T E+
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNT 131
L EY V A++ T
Sbjct: 60 QGLRPGSEYTVSVVALHDDMESQPLIGT 87
|
| >1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
S+ ++ QV Y + D ++ LR SEY V
Sbjct: 14 DVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVV 73
Query: 643 AENSVGLGPEATT 655
A +
Sbjct: 74 ALHDDMESQPLIG 86
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
APVI EP D + L+C S + W + G +T+ R V+
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPN----GTVMTHGAYKVRIAVL 394
Query: 203 --------NCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
N + G YTC +N G S TL V G
Sbjct: 395 SDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 536 PRPEISWMK-NGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+SW+ NG +T + RI + + T+ +V DT YT +N+ G+T+
Sbjct: 368 SLTSVSWITPNGTVMTHGAYKVRIAVLSD-GTLNFTNVTVQDTGMYTCMVSNSVGNTTAS 426
Query: 594 LSLQVLGY 601
+L V G
Sbjct: 427 ATLNVTGT 434
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-IFDGENII 729
AP+ +E + V E L + ++ S+ W N +++ + I +
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + D G Y + +N +G+ T A + V
Sbjct: 399 LNFTNV-TVQDTGMYTCMVSNSVGNTTASATLNVT 432
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
AP I + +D L+C P +KW + G +++ + R +V+
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPN----GTVLSHASRHPRISVL 404
Query: 203 --------NCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+ S G YTC TN AG + S L V
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-IFDGENII 729
AP ++ + + E L K + P S+ W N +LS + I +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAEL--KCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L +D G Y + TN G++ A + V
Sbjct: 409 LNFSHV-LLSDTGVYTCMVTNVAGNSNASAYLNVST 443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 536 PRPEISWMK-NGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P + W+ NG ++ S+ RI + + T+ V+ +DT YT TN AG+++
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDG-TLNFSHVLLSDTGVYTCMVTNVAGNSNAS 436
Query: 594 LSLQVLGY 601
L V
Sbjct: 437 AYLNVSTA 444
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 5e-10
Identities = 33/264 (12%), Positives = 66/264 (25%), Gaps = 54/264 (20%)
Query: 128 SHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG 187
+ +V +++ ++Q S+TL +P ++
Sbjct: 90 KEEVQLLVFGLTANSDTHLLQG----------QSLTLTLESPPGSSPSVQCRSPRGKNIQ 139
Query: 188 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITAR 247
T +V G +TC E ++V ++++ +
Sbjct: 140 GGKT-------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA--FQKASSIVYKKE 190
Query: 248 GTQRKLVIKRVTQDD-ETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAV 306
G Q + + T G L + S K + + + +
Sbjct: 191 GEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250
Query: 307 EFLS---KLPSVTLVPH------------LGDATFQVEL-------------------SS 332
+ L LP G +V L +S
Sbjct: 251 KKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTS 310
Query: 333 PDIQVKWLKKGKEIKESARHIITS 356
P + + + KE K S R
Sbjct: 311 PKLMLSLKLENKEAKVSKREKAVW 334
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 33/254 (12%), Positives = 66/254 (25%), Gaps = 56/254 (22%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEI---------- 52
+ TL++ + E +D G +T ++ + + +L+ A
Sbjct: 139 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSF 198
Query: 53 -----VGRSDSSVTLHWRPPQDDGHSPVTGYVLE--------SHDKDEFMVWNKIETTST 99
V + S L W+ + + L+ + + K+ T
Sbjct: 199 PLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT 258
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
+ +A G VV++A Q
Sbjct: 259 LPQAL-PQYAGSGNLTLALEAKTGK--LHQEVNLVVMRAT-------------------Q 296
Query: 160 SSVTLECVVSGVPTPDIK--WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
L C V G +P + ++ K R V G + C
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK--------REKAVWVLNPEAGMWQCLL- 347
Query: 218 NEAGTAETSCTLLV 231
+++G + V
Sbjct: 348 SDSGQVLLESNIKV 361
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 1e-08
Identities = 35/373 (9%), Positives = 82/373 (21%), Gaps = 126/373 (33%)
Query: 396 SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
G + + K + R ++ + N Y C+ ++ +
Sbjct: 40 QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-- 97
Query: 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNL 515
+ + L +L
Sbjct: 98 -----------------------------------------FGLTANSDTHL--LQGQSL 114
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
L+++S P + + + T+++ + D
Sbjct: 115 ---TLTLESP--------PGSSPSVQCRSPRGKNI----------QGGKTLSVSQLELQD 153
Query: 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ T+T T + + VL + S++ Y E
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAF-----------------QKASSIVYKKEG----- 191
Query: 636 EYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695
V F + + G + A+
Sbjct: 192 ---------EQVEFSFPLA------------------------FTVEKLTGSGELWWQAE 218
Query: 696 VKASPAPSIVWFRNNK--PLLSSPKKREIFDGENIILELKEAD---SETDAGDYKVVATN 750
+S I + NK + + ++ G+ + L L +G+ +
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278
Query: 751 ELGSATHGARVTV 763
+ G + V
Sbjct: 279 KTGKLHQEVNLVV 291
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 7e-06
Identities = 9/86 (10%), Positives = 20/86 (23%), Gaps = 20/86 (23%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI--------------------KGRNITYENNVARF 199
+V L C S + W + + R ++
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 200 TVVNCSESSEGRYTCKATNEAGTAET 225
+ N Y C+ ++ +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQL 95
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 17/179 (9%), Positives = 39/179 (21%), Gaps = 34/179 (18%)
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKL 484
+V G +TC E + + + + + +
Sbjct: 144 LSVSQLELQDSGTWTCTVLQNQKKVEFK-----------IDIVVLAFQKASSIVYKKEGE 192
Query: 485 AVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK 544
V FS+ T ++ + W+ E
Sbjct: 193 QVEFSFPLAFTVEKLTGSGE-------------------LWWQAERASSSKSWITFDLKN 233
Query: 545 NGAEITDSKACRIFIDEETS----TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ + T+ A + T+ G +++L V+
Sbjct: 234 KEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM 292
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 30/262 (11%), Positives = 61/262 (23%), Gaps = 63/262 (24%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVT 61
++ + L I + +D Y + + ++ + DT + G S+T
Sbjct: 63 DQGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQG---QSLT 115
Query: 62 L------------HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTK 109
L R P+ K T V++L +
Sbjct: 116 LTLESPPGSSPSVQCRSPR-----------------------GKNIQGGKTLSVSQLELQ 152
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQE--------PLKDSVAGFQSS 161
+ + VV+ + +E PL +V S
Sbjct: 153 DSGTWTCTVLQ--NQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 162 VTLECVVSGVPTPD----IKWYKDDSLIKGRNITYENNVAR-------FTVVNCSESSEG 210
L + + +K + + + + G
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 211 RYTCKATNEAGTAETSCTLLVQ 232
T + G L+V
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVM 292
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 5e-10
Identities = 44/239 (18%), Positives = 70/239 (29%), Gaps = 25/239 (10%)
Query: 9 TIVKFEDKDLGDY--TISLSNALGQASATTKVTLLSAPGAPDTPEIVG----RSDSSVTL 62
T +K GDY TI+ + G +++ + + PDTPEI+ S S++ L
Sbjct: 45 TSIKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYL 104
Query: 63 HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL-------------TTK 109
W + E M K+ T TT
Sbjct: 105 KWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAI 164
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169
H R N +G + V + ++ P +D V S +T CV
Sbjct: 165 HFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFP-QDKVILVGSDITFCCVSQ 223
Query: 170 GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228
+ + + LI + + N S S+ T E T
Sbjct: 224 EKVLSALIGHTNCPLIH-----LDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIF 277
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 8e-10
Identities = 21/146 (14%), Positives = 32/146 (21%), Gaps = 8/146 (5%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLH 63
D + I ++ T + P P +
Sbjct: 242 DGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICS 301
Query: 64 WRPPQDDGH--SPVTGYVL---ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
W P + T Y L S S L + Y F + A
Sbjct: 302 WNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNA 361
Query: 119 VNAIGTGPASHN---TRYVVVKAPVD 141
N +G ++ T V P
Sbjct: 362 HNPLGRSQSTILVNITEKVYPHTPTS 387
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLS--APGAPDTPEIVGRSDSSVT 61
+S L ++++ ++T++ N LG++ +T V + P P + ++ + ++V
Sbjct: 340 ESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVK 399
Query: 62 LHWRPPQDDGHSPVT---GYVLESHDKDEFMVW-NKIETTSTTYEVTKLTTKHEYMFRVA 117
L W P + + +++ V +E +S + KL Y FR+
Sbjct: 400 LSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIR 459
Query: 118 AVNA 121
Sbjct: 460 CSTE 463
|
| >1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-10
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
AP AP ++ SS+TL W D+ VTGY + + + T TT
Sbjct: 3 APTAPTNLASTAQTTSSITLSWTASTDN--VGVTGYDVYN---GTALATT---VTGTTAT 54
Query: 103 VTKLTTKHEYMFRVAAVNAIG-TGPAS 128
++ L Y F V A +A G AS
Sbjct: 55 ISGLAADTSYTFTVKAKDAAGNVSAAS 81
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 61.6 bits (148), Expect = 6e-10
Identities = 60/490 (12%), Positives = 128/490 (26%), Gaps = 57/490 (11%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIV-GRSDSSV 60
E + + I + D G Y L S + + PG + ++ +V
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTV 130
Query: 61 TLHWRPP-----------QDDGHSPV-----TGYVLESHDKDEFMVWNKIETTSTTYEVT 104
T++ + G PV +GYV ++ + + +
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLK---DSVAGFQSS 161
+L + A + + N V+K + ++ + +
Sbjct: 191 QLRLSDAGQYLCQAGDDSNS--NKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANV 248
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVV--NCSESSEGRYTCK 215
C S D+ + ++ F+VV + GRY C
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCG 308
Query: 216 ATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKS 275
A ++ E S Q +E I + + + V +
Sbjct: 309 AHSDGQLQEGSPIQAWQLFVNEE--STIPRSPTVVKGVAGSSVA-----------VLCPY 355
Query: 276 VSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDI 335
K ++ E + ++L+ G+ TF V L+ +
Sbjct: 356 NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN--QL 413
Query: 336 QVK-----WLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK-- 388
+ W + I + L + + + +
Sbjct: 414 TSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSY 473
Query: 389 ----LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444
KW + G + + + + + + T+ + + EG Y C
Sbjct: 474 EKYWCKWNNTGCQALPSQDEGPSKAFVNCDE---NSRLVSLTLNLVTRADEGWYWCGVKQ 530
Query: 445 EAGTAETRTM 454
ET +
Sbjct: 531 GHFYGETAAV 540
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 6e-08
Identities = 70/539 (12%), Positives = 142/539 (26%), Gaps = 121/539 (22%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK-WYKDDS-----LIKGRNITYENNVAR 198
P + K +VT+ C K YK +I N R
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172
Query: 199 FTVV--------------NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHII 244
+ S G+Y C+A +++ + + + L V
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK-------PEPE 225
Query: 245 TARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTP 304
R V L + + K+L R +S E+ K P
Sbjct: 226 LVYEDLRGSVTFHCA-----------LGPEVANVAKFLCRQSSG-ENCDVVVNTLGKRAP 273
Query: 305 AVEFLSKLPSVTLVPHLGDATFQVELSSPDIQ-----------VKWLKKGKEIKESARHI 353
A E + L P D +F V ++ + L++G I+ +
Sbjct: 274 AFE-----GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFV 328
Query: 354 ITSRGTQRKLVIKRVTQDDETDI-----GVLALNVKSVSKLKWLDFGSGGWWFESKYKDD 408
R + + + + ++K + G +S+
Sbjct: 329 NEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVK 388
Query: 409 SLIKGR-NITYENNVARFTVV--NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465
+ +GR ++ E FTV+ + G Y C + T +
Sbjct: 389 AQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEG------ 442
Query: 466 LRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQ 525
P +V + T + P
Sbjct: 443 ---------EPNLKVPGNVTAV---LGETLKVPCHFPC---------------------- 468
Query: 526 WKVEVKYFGFPRPEISWMKNGAEI---TDSKACRIFI----DEETSTIAIYSVVRADTST 578
K+ + + W G + D + F+ + ++ + V RAD
Sbjct: 469 -----KFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 579 YTVTA-TNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
Y + + + V ++++ + +A D + + +++ + E
Sbjct: 524 YWCGVKQGHFYGETAAVYVAV-----EERKAAGSRDVSLAKADAAPDEKVLDSGFREIE 577
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 2e-05
Identities = 31/272 (11%), Positives = 71/272 (26%), Gaps = 39/272 (14%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDT-----PEIVGRS 56
++ S ++ I +D G Y + + T + G +
Sbjct: 286 KDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA 345
Query: 57 DSSVTLH------WRPP-----QDDGHSPVTGYVLESHDKDE-------FMVWNKIETTS 98
SSV + +G +L + + + +
Sbjct: 346 GSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGT 405
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGF 158
T + +LT++ + T + ++ P + L +++
Sbjct: 406 FTVILNQLTSRDAGFYWCLTNG--DTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETL--- 460
Query: 159 QSSVTLECVVSGVPTPDIKWYKDDSLIK--------GRNITYENNVARFTVV--NCSESS 208
+ C S KW + + N ++ + +
Sbjct: 461 KVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRAD 520
Query: 209 EGRYTCKATNEAGTAET-SCTLLVQGKEIKES 239
EG Y C ET + + V+ ++ S
Sbjct: 521 EGWYWCGVKQGHFYGETAAVYVAVEERKAAGS 552
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 9e-05
Identities = 39/448 (8%), Positives = 93/448 (20%), Gaps = 115/448 (25%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVV--------------NCSESSEGRYTCKATN 444
+ + +I N R + S G+Y C+A +
Sbjct: 147 LYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGD 206
Query: 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504
++ + L+ + + + + +
Sbjct: 207 DSNSN-----------KKNADLQVLKPEPELVYEDLRGSVTFHCALGPE----------- 244
Query: 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI----D 560
V + K + ++ G + RI +
Sbjct: 245 -----------------VANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-RILLNPQDK 286
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI------------IQQQEK 608
+ + ++ I + + D Y A + ++ ++
Sbjct: 287 DGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAG 346
Query: 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668
+S+ S + ++ G ++L G+
Sbjct: 347 SSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE-GWVKAQYEGRLSLLEEPGNGT 405
Query: 669 ---------------------------------PGQAPLFIERFEEKTVKEKGTIRL--- 692
+ ++ T T+++
Sbjct: 406 FTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCH 465
Query: 693 -MAKVKASPAPSIVWFRNNKPLLSSPKKRE-----IFDGENIILELKEAD-SETDAGDYK 745
K + W L S + D + ++ L + D G Y
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525
Query: 746 -VVATNELGSATHGARVTVDVEKVGRPS 772
V T V V+ K
Sbjct: 526 CGVKQGHFYGETAAVYVAVEERKAAGSR 553
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 9e-10
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 13/103 (12%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI--KWYKDDSLIKGRNITYENNVAR 198
D P I + A S V+ C + + W D+ ++ + ++
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 199 F-----------TVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+ N +SEG Y C +N G++ + L
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 9e-07
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREI-------- 722
P + E ++ + +S + W +N+ L + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 723 FDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVD 764
IL L+ T G Y+ V +N GS+ A +T++
Sbjct: 71 LMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 1e-09
Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 53/214 (24%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
++V L + WYK ++ + I ARF + + Y
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEI------ARFVPNSNMNFTGQAY------- 61
Query: 220 AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279
S R II + G+ L+ + +T D GV L++ +
Sbjct: 62 -------------------SGREIIYSNGS---LLFQMITMKDM---GVYTLDMTDEN-- 94
Query: 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKW 339
++T F + + P ++ + T V L T + ++W
Sbjct: 95 ------YRRTQATVRFHVHQPVTQPFLQ-----VTNTTVKELDSVTLTCLSNDIGANIQW 143
Query: 340 LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373
L + ++ + R ++ L I + ++D
Sbjct: 144 LFNSQSLQLTERMTLSQNN--SILRIDPIKREDA 175
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 1e-08
Identities = 27/189 (14%), Positives = 49/189 (25%), Gaps = 52/189 (27%)
Query: 412 KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADT 471
GR I Y N F + G YT T+E T + V
Sbjct: 62 SGREIIYSNGSLLFQ--MITMKDMGVYTLDMTDENYRRTQAT------VRFHVHQPVTQP 113
Query: 472 RVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK 531
++ V + +V + +
Sbjct: 114 FLQVTNTTVKELDSVTLTCLS--------------------------------------- 134
Query: 532 YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-T 590
I W+ N + ++ R+ + + S + I + R D Y +N
Sbjct: 135 --NDIGANIQWLFNSQSLQLTE--RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR 190
Query: 591 SLDLSLQVL 599
S + L ++
Sbjct: 191 SNSIKLDII 199
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
+ TVKE ++ L +I W N++ L + R
Sbjct: 100 ATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSN-DIGANIQWLFNSQSLQLTE--RM 156
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVDV 765
N IL + E DAG+Y+ +N + + ++ +
Sbjct: 157 TLSQNNSILRIDPIKRE-DAGEYQCEISNPVSVRRSNSIKLDIIF 200
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 5e-06
Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 12/177 (6%)
Query: 61 TLHW-RPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVA 117
W + + +V S+ ++ E ++ + +T K ++ +
Sbjct: 30 AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89
Query: 118 AVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177
+ V+ V + ++ SVTL C+ + + +I+
Sbjct: 90 MTDENYR------RTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQ 142
Query: 178 WYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232
W + SL +T N + + G Y C+ +N + S L +
Sbjct: 143 WLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199
|
| >3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-09
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTS 98
+ P E+V + +S+ + W + Y + + + +
Sbjct: 1 MGVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPV 56
Query: 99 TTYEVTKLTTKHEYMFRVAAVN---AIGTGPASHNTRYVVVKAPVDAEAP 145
T ++ L +Y V AV GP +++ + + + + P
Sbjct: 57 HTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
|
| >3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 586 AAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S Y I E + T+ T+ L+ +Y
Sbjct: 14 AATPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTIT 73
Query: 641 VFAENSVGLGPEATTELVALATHATLGSPGQAP 673
V+A + + P
Sbjct: 74 VYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 5/91 (5%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWN-KIETTSTT 100
S P S + + W PV + + + +T+
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATS 61
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L++ Y RV + G
Sbjct: 62 AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGR 92
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 7e-06
Identities = 10/91 (10%), Positives = 18/91 (19%), Gaps = 10/91 (10%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
+ + V + + + + L + Y +V
Sbjct: 20 SHDAARVFWEGAPRPVRLVRVTYVSSEG-GHSGQTEAPGNATSAMLGPLSSSTTYTVRVT 78
Query: 643 AENSVGLGPEATTELVALATHATLGSPGQAP 673
G T T SP P
Sbjct: 79 CLYPGGGSSTLTGR----VTTKKAPSPSSGP 105
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPP---QDDGHSPVTGYVLE-SHDKDEFMVWNKIETTST 99
P + S ++ + W + + Y + + + T+
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+Y VT L Y F V + S
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS 97
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-05
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
Y ++ + TK + +TL Y V L+ + Y F V
Sbjct: 42 DSRYYTVRWKTNIP-ANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSST 95
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 2e-09
Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 27/190 (14%)
Query: 48 DTPEIVGRSDSSVTLHWRPPQDDGHSPV------TGYVLESHDKDEFMVWNKIETTSTTY 101
D+ + G + L+ Q + V E K + + +
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 102 --EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ 159
++ LT + V + GT + + ++ P+I
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGT---RILNKALDLRILEMVSKPMIYWE--------C 110
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S+ TL C V ++K Y+ + ++ + T+ + + CKA N
Sbjct: 111 SNATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKAVNR 162
Query: 220 AGTAETSCTL 229
+
Sbjct: 163 VSQESEMEVV 172
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 697 KASPAPSIVWFRNNKPLLSSPKKREIFDG-------ENIILELKEADSETDAGDYKVVAT 749
+ W R + + +K + F N L++K + D+G Y V
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNVTVY 81
Query: 750 NELGSATHGARVTV-DVEKVGRPSIN 774
+ G+ + + +E V +P I
Sbjct: 82 STNGTRILNKALDLRILEMVSKPMIY 107
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 161 SVTLEC--VVSGVPTPDIKWYKDDSLI---KGRNITYENNVARFTVVNCS-------ESS 208
+ L +++W + +L+ K + + + A + N
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDD 72
Query: 209 EGRYTCKATNEAGTAETSCTLLVQGKE 235
G Y + GT + L ++ E
Sbjct: 73 SGTYNVTVYSTNGTRILNKALDLRILE 99
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 32 ASATTKV-TLLSAP-GAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVL-------- 80
S+ + + P AP + + + +HW P + GY +
Sbjct: 1 GSSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 81 -ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ + + + + T + L Y V VN G GPAS
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 20/90 (22%)
Query: 580 TVTATNAAGSTSLDLS----------LQVLGYII-------QQQEKNSLKFTKVATLDPS 622
V N ST ++ + GY I + K+ T S
Sbjct: 22 RVNVVN---STLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGS 78
Query: 623 TLQYTVENLRDKSEYYFQVFAENSVGLGPE 652
+ L S Y V N G GP
Sbjct: 79 KTHGMLPGLEPFSHYTLNVRVVNGKGEGPA 108
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 2e-09
Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 30/205 (14%)
Query: 26 SNALGQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHD 84
G S V T + P P P V S S + L W+PP D + +T Y++
Sbjct: 576 RRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP-NGNITHYLVFWER 634
Query: 85 KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEA 144
+ E +++ ++ T + + ++ + + + ++
Sbjct: 635 QAEDSELFELDYCLKGLKLPSRT----WSPPFESEDSQKHNQSEYEDSAGECCSCPKTDS 690
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNC 204
+++E + S + + K R++ V N
Sbjct: 691 QILKELEESSF-----------RKTFEDYLHNVVFVPRPSRKRRSLGD--------VGNA 731
Query: 205 SESSEGRYTCKATNEAGTAETSCTL 229
+ E R K N + S +
Sbjct: 732 GNNEEHRPFEKVVN-----KESLVI 751
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 7e-07
Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 26/216 (12%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDD--------GHSPVTGYVLE 81
Q+ + D+ + +SS + + G V
Sbjct: 671 NQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGN 730
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ + +E + K+ + ++ L Y + A N YV + +
Sbjct: 731 AGNNEEHRPFEKV-VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPE 789
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD---------IKWYKDDSLIKGRNITY 192
A+A I P+ + + V + + + + + T
Sbjct: 790 AKADDIVGPVTHEIFE-NNVVH----LMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTR 844
Query: 193 ENNVARFTVVNCSESSEGRYTCK--ATNEAGTAETS 226
++ S G Y+ + AT+ AG +
Sbjct: 845 KHFALERGCR-LRGLSPGNYSVRIRATSLAGNGSWT 879
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 1e-05
Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 25/116 (21%)
Query: 55 RSDSSVTLHWRPPQDDGHSPVTGYVL-------------ESHDKDEFMVWNKIE------ 95
S + L W P + G++L + D W ++
Sbjct: 480 TSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLR 539
Query: 96 ------TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+ + L +Y V + ++ + ++ DA P
Sbjct: 540 SNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP 595
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-09
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 160 SSVTLECVVSGVPTPDIKWYKD-------------DSLIKGRNITYENNVARFTVVNCSE 206
+ L C I + + L + ++ T+ +
Sbjct: 24 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 83
Query: 207 SSEGRYTCKATNEAGTAETSCTLLVQGK 234
S +G YTC A++ T + S + V K
Sbjct: 84 SDQGLYTCAASSGLMTKKNSTFVRVHEK 111
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 536 PRPEISWMKNGAEITDSKACRIFIDEET--------STIAIYSVVRADTSTYTVTATNAA 587
+ +W ++ K + ++ ST+ I V R+D YT A++
Sbjct: 38 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
Query: 588 GSTSLDLSLQVLG 600
+ ++V
Sbjct: 98 MTKKNSTFVRVHE 110
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 9e-09
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 94 IETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
E T+++ + + EY + S V + ++Q
Sbjct: 46 SEETNSSLNIVNAKFEDSGEYKCQH------QQVNESEPVYLEVFSDWL-----LLQASA 94
Query: 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG 210
+ + G + L C + +YKD G + Y ++ N + G
Sbjct: 95 EVVMEG--QPLFLRCHGWRNWDVYKVIYYKD-----GEALKYWYENHNISITNATVEDSG 147
Query: 211 RYTCKATNEAGTAETSCTLLVQ 232
Y C S L +
Sbjct: 148 TYYCTGKVWQLD-YESEPLNIT 168
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 161 SVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
+VTL C + KW+ + SL + N + +VN G Y C+
Sbjct: 21 NVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------SSLNIVNAKFEDSGEYKCQHQQV 73
Query: 220 AGTAETS 226
+
Sbjct: 74 NESEPVY 80
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 22/196 (11%), Positives = 47/196 (23%), Gaps = 66/196 (33%)
Query: 405 YKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464
+ + SL + N + +VN G Y C+ + L
Sbjct: 40 FHNGSLSEETN-------SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWL---- 88
Query: 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKS 524
++ + V++ +
Sbjct: 89 -------LLQASAEVVMEGQPLFLRCHGWR------------------------------ 111
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
+ ++ + K+G + E I+I + D+ TY T
Sbjct: 112 ---------NWDVYKVIYYKDGEALKYW--------YENHNISITNATVEDSGTYYCTGK 154
Query: 585 NAAGS-TSLDLSLQVL 599
S L++ V+
Sbjct: 155 VWQLDYESEPLNITVI 170
|
| >3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 40 LLSAPGAPDTPEIVGRS-DSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETT 97
++SAP P V S ++ L W Y ++ S T
Sbjct: 1 MVSAPAFPTGLSAVLDSSGNTANLTWNAAPG-----ANSYNVKRSTKSGGPYTTIATNIT 55
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
ST Y T + T +Y + V+AV+ S
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLNS 86
|
| >3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 13/83 (15%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 581 VTATNAAGSTSLDLS----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636
++A + + +L+ Y +++ K+ +T +AT + ++ YT + ++
Sbjct: 11 LSAVLDSSGNTANLTWNAAPGANSYNVKRSTKSGGPYTTIAT-NITSTNYTDTGVATGTK 69
Query: 637 YYFQVFAENSVGLGPEATTELVA 659
YY+ V A ++ + ++
Sbjct: 70 YYYVVSAVSNGVETLNSAEAILQ 92
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 11/119 (9%)
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD 181
I G A + V V AP + I V S L C G P ++ W
Sbjct: 99 ISYGGADYKRITVKVNAPYNKINQRI-----LVVDPVTSEHELTCQAEGYPKAEVIWTSS 153
Query: 182 DS-LIKGRNITYENNVAR--FTV---VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
D ++ G+ T + F V + + ++ + C + L++
Sbjct: 154 DHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 11/117 (9%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
YK T + I +VD L+ +++ G+P+ E+ W +
Sbjct: 103 GADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAE--------GYPKAEVIWTSSD 154
Query: 547 AEITDSKACRIFIDEETSTIAIYSVVR---ADTSTYTVTATNAAGSTSLDLSLQVLG 600
++ K E + S +R + T + L +
Sbjct: 155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE---- 726
I + L + + P ++W ++ +LS E
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
N+ L+ + T + H A + +
Sbjct: 175 NVTSTLR--INTTTNEIFYCTFRRLDPEENHTAELVI 209
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 3e-08
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 14/139 (10%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV-----G 54
+ D+ T V + + + + NALG+ ++ P+ P +
Sbjct: 57 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSE 116
Query: 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE-----TTSTTYEVTKLTTK 109
S + L W P + Y ++ KD W++I +T +++ V L
Sbjct: 117 ELSSILKLTWTNPSIKSV-IILKYNIQYRTKDA-STWSQIPPEDTASTRSSFTVQDLKPF 174
Query: 110 HEYMFRVAAVNAIGTGPAS 128
EY+FR+ + G G S
Sbjct: 175 TEYVFRIRCMKEDGKGYWS 193
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 22/182 (12%), Positives = 50/182 (27%), Gaps = 26/182 (14%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYE 102
P P + + W ++ T + L+ +F T T+
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKRDTPTSCT 65
Query: 103 VTKLTTKH-EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
V T V A NA+G + H V P +
Sbjct: 66 VDYSTVYFVNIEVWVEAENALGKVTSDH--INFDPVYKVKPNPP--------------HN 109
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYE-----NNVARFTVVNCSESSEGRYTCKA 216
+++ + W + S+ + Y + + ++ + +++ R +
Sbjct: 110 LSVINSEELSSILKLTW-TNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTV 168
Query: 217 TN 218
+
Sbjct: 169 QD 170
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 5e-08
Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 25/149 (16%)
Query: 94 IETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
I + +++Y + T EY + + +T V+ V ++Q P
Sbjct: 49 ISSQASSYFIDAATVNDSGEYRCQ-----------TNLSTLSDPVQLEVHIGWLLLQAPR 97
Query: 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG 210
+ L C + + ++ G++ Y ++ + F + + G
Sbjct: 98 WVFKEE--DPIHLRCHSWKNTALHKVTYLQN-----GKDRKYFHHNSDFHIPKATLKDSG 150
Query: 211 RYTCKATNEAGTAETSCTLLVQGKEIKES 239
Y C+ + +S T+ + I ++
Sbjct: 151 SYFCRGLVGSKN-VSSETVNIT---ITQA 175
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 161 SVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
SVTL+C + P + +W+ ++SLI + + + + + + G Y C+
Sbjct: 24 SVTLKCQGAYSPEDNSTQWFHNESLISSQA-------SSYFIDAATVNDSGEYRCQTNL 75
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 7e-08
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 22/145 (15%)
Query: 92 NKIETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQE 149
N I T + K EY + + P V E V+Q
Sbjct: 44 NLIPTHTQPSYRFKANNNDSGEYTCQTG--QTSLSDPVHLT---------VLFEWLVLQT 92
Query: 150 PLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS 208
P + G ++ L C P + ++++ G++ + + F++ + S
Sbjct: 93 PHLEFQEG--ETIMLRCHSWKDKPLVKVTFFQN-----GKSQKFSHLDPTFSIPQANHSH 145
Query: 209 EGRYTCKATNEAGTAE-TSCTLLVQ 232
G Y C T+ VQ
Sbjct: 146 SGDYHCTGNIGYTLFSSKPVTITVQ 170
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV-----GRSDSSVTLHWRPPQDDGH 72
+ + + NALG+ ++ P+ P + S + L W P
Sbjct: 171 NIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV 230
Query: 73 SPVTGYVLE--SHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ Y ++ + D + +T T +++ V L EY+FR+ + G G S
Sbjct: 231 -IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 14/156 (8%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEI-----VGRSDSSVTLHWRPPQD-DG 71
Y +S+ ++++G + T+ PD P V R+ +++ W+ P +
Sbjct: 168 FYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS 227
Query: 72 HSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ L + F W ++ + + ++ ++ A G G S
Sbjct: 228 SFYRLRFELRYRAERSKTFTTWM-VKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE 286
Query: 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLE 165
+ + ++ +P + + + Q+ T +
Sbjct: 287 WSPEAMGTPWTESRSPPAENEVSTPM---QALTTNK 319
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 4e-06
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 144 APVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
P + + SVTL C V + W + R +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ G Y+C AG + LLV
Sbjct: 66 SVQLHDSGNYSC---YRAGRPAGTVHLLVD 92
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-07
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 8/84 (9%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVL------ESHDKDEFMVWNKIETTSTTYEVT 104
V + ++V + W + + GY + + + T + +
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 105 KLTTKHEYMFRVAAVNAIGTGPAS 128
L Y +V G S
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDS 104
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 585 NAAGSTSLDLSLQ-------VLGYIIQQQEKNSL----KFTKVATLDPSTLQYTVENLRD 633
T++ ++ + GY + ++ + L + + P+ + NL+
Sbjct: 25 VVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKK 84
Query: 634 KSEYYFQVFAENSVGLGPE 652
Y +V + G +
Sbjct: 85 GVTYEIKVRPYFNEFQGMD 103
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 3e-07
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFR-NNKPLLSS 716
+ + G+ +F+++ + +V+ ++AKV P+I WF+ L S
Sbjct: 1 GSSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK 60
Query: 717 PKKR----EIFDGENII----LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
R E + + + L + + D G Y++ + + G + V+ +
Sbjct: 61 SGARFSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-05
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 15/114 (13%)
Query: 137 KAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYK----DDSLIKGRN 189
+ + V + + V+G P IKW+K + G
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 190 ITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
+++ + + V G Y + + + V+
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488 | Back alignment and structure |
|---|
Score = 52.7 bits (125), Expect = 4e-07
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 21 YTISL--SNALGQASATTKVTLLS--APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVT 76
+ +L N LGQA + + + AP P + ++ + + VT W P + +
Sbjct: 360 HNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLL 419
Query: 77 G---YVLESHDKDEFMV-WNKIETTSTTYEVTKLTTKHEYMFRVAA 118
+ K+ E ++ V KL Y FRV
Sbjct: 420 CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRC 465
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488 | Back alignment and structure |
|---|
Score = 42.3 bits (98), Expect = 6e-04
Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 8/147 (5%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
T+ I + ++ T V P P +
Sbjct: 246 LYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIIC 305
Query: 63 HWRPPQDDG--HSPVTGYVL---ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVA 117
W P + G T Y L S F + + V + + F +
Sbjct: 306 SWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLT 365
Query: 118 AVNAIGTGPAS---HNTRYVVVKAPVD 141
N +G ++ + T V P
Sbjct: 366 GRNPLGQAQSAVVINVTERVAPHDPTS 392
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 4e-07
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 160 SSVTLECVVSGVPTPDIKWYK--------DDSLIKGRNITYENNVARFTVV----NCSES 207
SSV+LEC +++ + D SL R E + + +
Sbjct: 18 SSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77
Query: 208 SEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKL 253
G+Y C A T+ V+ ++ R + + +L
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 6e-07
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 13/122 (10%)
Query: 20 DYTISL--SNALGQAS------ATTKVTLLSAP---GAPDTPEIVGRSDSSVTLHWRPPQ 68
+ I + NALG + V L P +PE + L W P Q
Sbjct: 174 NMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ 233
Query: 69 DDGHSPVTGYVL--ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
H + + + + + + YE+ L Y ++ + G
Sbjct: 234 PGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGH 293
Query: 127 AS 128
S
Sbjct: 294 WS 295
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 3e-04
Identities = 21/185 (11%), Positives = 45/185 (24%), Gaps = 12/185 (6%)
Query: 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLH 63
+ +T+ Q ++ P P ++ + SS+
Sbjct: 60 ESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQ 119
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVW---------NKIETTSTTYEVTKLTTKHEYMF 114
W P + T + L+S K + + L
Sbjct: 120 WEPGPETHLP--TSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGI 177
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
V A NA+GT + + ++ +P ++ + L
Sbjct: 178 WVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH 237
Query: 175 DIKWY 179
+
Sbjct: 238 INQKC 242
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 22/144 (15%)
Query: 94 IETTSTTYEVTKLTTKH--EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151
I + +++Y + T EY + +T V+ V ++Q P
Sbjct: 49 ISSQASSYFIDAATVDDSGEYRCQ-----------TQLSTLSDPVQLEVHIGWLLLQAPR 97
Query: 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG 210
+ L C + + ++ G+ Y ++ + F + + G
Sbjct: 98 WVFKEE--DPIHLRCHSWKNTALHKVTYLQN-----GKGRKYFHHNSDFYIPKATLKDSG 150
Query: 211 RYTCKATNEAGTAE-TSCTLLVQG 233
Y C+ + + + +
Sbjct: 151 SYFCRGLVGSKNVSSETVQITITQ 174
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 13/122 (10%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV---------GRSDSSVTLHWRPPQ 68
I + N LG + + + P + + L W+P +
Sbjct: 80 YMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWK 139
Query: 69 DDGHSPVTGYV--LESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
+ + + + + ++ +E+ L Y ++ + + G
Sbjct: 140 PSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGF 199
Query: 127 AS 128
S
Sbjct: 200 WS 201
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 15/146 (10%)
Query: 47 PDTPEIVG----RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWN---------K 93
P +P + + +S+ W P + T ++L+S + K
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLP--TSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 94 IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKD 153
+ + L V A N +G+ + + ++ + D
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 154 SVAGFQSSVTLECVVSGVPTPDIKWY 179
V+ + L +
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQEC 148
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 9 TIVKFEDKDLGDYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV---GRSDSSVTLH 63
E D D+ I + S+ ++ L P P + S + L
Sbjct: 198 RFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLK 257
Query: 64 WRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123
W P + Y +E + D + TY + + F V + I
Sbjct: 258 WSIPLGPIPARCFDYEIEIREDDT--TLVTATVENETYTLKTTNETRQLCFVVRSKVNIY 315
Query: 124 TGPASH 129
Sbjct: 316 CSDDGI 321
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 38/243 (15%), Positives = 68/243 (27%), Gaps = 23/243 (9%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP--QDDGHSPVTGY 78
YT +S G S++ ++ P D + + L W+PP D Y
Sbjct: 12 YTFLISTTFGCTSSSDTEIKVNPP--QDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEY 69
Query: 79 VLESHDKDEFMVWNKIETTSTTYE-VTKLTTKHEYMFRVAAVNA--IGTGPASHNTRYVV 135
L+ + W I T + Y+ L E G+ S
Sbjct: 70 ELKYRNIGS-ETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTY 128
Query: 136 VKAPVDAEAPVIQEPLKDSVAGFQSSVTLEC-----VVSGVPTPDIKWYKDDSLIKGRNI 190
+P +Q D + + L C + + T +Y + L
Sbjct: 129 WISPQGIPETXVQ----DMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQC 184
Query: 191 ------TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHII 244
+N RF + S+ + ++E +S +K +
Sbjct: 185 VDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYL 244
Query: 245 TAR 247
T
Sbjct: 245 TFT 247
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 35/195 (17%)
Query: 48 DTPEIVGRSDSSVTLHWRPPQDDGHSPVT------GYVLESHDKDEFMVWN-------KI 94
P + + S+VTL + +T +LE + V+ +
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDS 154
+ T+ + ++ + + + ++ + V V P+I
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHE----TEDQWKITMEVYEMV--SKPMI------Y 112
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 214
S+ TL C V ++K Y+ ++ ++ + T+ + + C
Sbjct: 113 WEC--SNATLTCEVLEGTDVELKLYQGKEHLR--------SLRQKTMSYQWTNLRAPFKC 162
Query: 215 KATNEAGTAETSCTL 229
KA N +
Sbjct: 163 KAVNRVSQESEMEVV 177
|
| >1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-06
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNV--ARFTVVNCS 205
Q P K S++G ++V L C P +I W +D I G ++ S
Sbjct: 12 QTPYKVSISG--TTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS 67
Query: 206 ESSE-GRYTCKATNEAGTAETSCTLL 230
E + G Y C L
Sbjct: 68 ELEQSGYYVCYPRGSKPEDANFYLYL 93
|
| >2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 20 DYTISLSNALGQASATTKVTLLSAPGAPDTPEIV---GRSDSSVTLHWRPPQDDGHSPVT 76
+ + L + T++ L P PE + S+S + L+W +
Sbjct: 110 TFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCL 166
Query: 77 GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++++ + + + + + + Y FRV + G A H
Sbjct: 167 EHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQH 219
|
| >2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 6e-06
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 11/102 (10%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDG------HSPVTGYVLESHDK 85
+S ++ + + + SS+ L+W P + LE H +
Sbjct: 2 SSGSSG-----SRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPR 56
Query: 86 DEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPA 127
+ T + + L + Y + + +
Sbjct: 57 PLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS 98
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-06
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 14/104 (13%)
Query: 143 EAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTV 201
+ Q PL +V + + L C V ++W + R +
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 202 V------------NCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
V + S S EG+YTC + L V G
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 7e-06
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPV--TGYVLESHDKDEFMVWNKI----ETTSTT 100
P V + + L W + V L+ + + W +I +T
Sbjct: 205 PPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQ 264
Query: 101 YEVTK-LTTKHEYMFRVAAVNAIGTGPAS 128
+ + K Y+ RV A + T S
Sbjct: 265 CVFPQNVFQKGIYLLRVQASDGNNTSFWS 293
|
| >2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 9e-06
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 20 DYTISLSNALGQASATTKVTLLSAPGAPDTPEIV---GRSDSSVTLHWRPPQDDGHSPVT 76
+ + L + T++ L P PE + S+S + L+W +
Sbjct: 72 TFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCL 128
Query: 77 GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
++++ + + + + + + Y FRV + G A H
Sbjct: 129 EHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQH 181
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 20/145 (13%)
Query: 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES 207
K S++G +SV L C + ++KW K+ + ++ + + + SE
Sbjct: 5 NIEYKVSISG--TSVELTCPLD--SDENLKWEKNGQELPQKHDKH------LVLQDFSEV 54
Query: 208 S-EGRYTCKATNEAGTAETSCTLLV--------QGKEIKESARHIITARGTQRKLVIKRV 258
G Y C V + ++ + G+Q V
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114
Query: 259 TQDDETDIGVLALNVKSVSK-LKWL 282
D G + L K +KWL
Sbjct: 115 QVDGSRGDGSVLLTCGLTDKTIKWL 139
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-05
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
RV + + A + ++ + ++ + SV L C G+
Sbjct: 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDK 134
Query: 175 DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
IKW KD S+I + + N ++ G Y C+ E
Sbjct: 135 TIKWLKDGSIIS----PLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
|
| >2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-05
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 16/129 (12%)
Query: 31 QASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHS-----PVTGYVLE 81
S+ + + L A G P P+ V G + +++ + WRPP VTGY +
Sbjct: 3 SGSSGVEFSTLPA-GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVY 61
Query: 82 SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
+ ST E+ +L + V ++A G S V P +
Sbjct: 62 A-KGQRVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDS-----AVAAVPPE 115
Query: 142 AEAPVIQEP 150
P P
Sbjct: 116 LLVPPTPHP 124
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 26/218 (11%), Positives = 53/218 (24%), Gaps = 22/218 (10%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
+ + +V W PP+ + Y DK KI + L +
Sbjct: 11 SVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQ----DKKIAPETRRSIEVPLNERI 66
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECV-VS 169
P+ + + A + + + ++C +
Sbjct: 67 CLQVGSQCSTNESEKPSILVEKCISPPEGDPESAV------TELQCIWHNLSYMKCSWLP 120
Query: 170 GVPTPDIKWYKDDSLIKGRNITYE--NNVARFTVVNC---------SESSEGRYTCKATN 218
G T Y + ++ N C S + +
Sbjct: 121 GRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKD 180
Query: 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIK 256
AG + S ++ +K HI L ++
Sbjct: 181 NAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQ 218
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 43/193 (22%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK--------------IET 96
+I G +VT + VL KD+ ++T
Sbjct: 4 QIYGVVYGNVTF---HVPSNVPLK---EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT 57
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA 156
S + + LT+ E + + + N T ++ V V P+I
Sbjct: 58 VSGSLTIYNLTSSDEDEYEMESPNITDT-----MKFFLYVLEMV--SKPMIYWE------ 104
Query: 157 GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 216
S+ TL C V ++K Y+ + ++ + T+ + + CKA
Sbjct: 105 --CSNATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKA 154
Query: 217 TNEAGTAETSCTL 229
N +
Sbjct: 155 VNRVSQESEMEVV 167
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS----------- 208
++TL+CV S ++W N +++ +++ S +
Sbjct: 17 QTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76
Query: 209 -EGRYTCKATNEAGTAETSCTLLVQGKEIKESARH 242
EG Y C ++ + ++V E R+
Sbjct: 77 DEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRY 110
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 142 AEAPVIQEPLKDSVAGFQ-SSVTLECVVSGV-PTPDIKWYKDDSLIKGRNITYENNVARF 199
P+ EP + VA +S L C ++ ++W D+ + + + +
Sbjct: 4 QVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL--GAVQSDTGRSVL 61
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
TV N S S+ G C + T + + LLV
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY 94
|
| >1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 7/105 (6%)
Query: 20 DYTISLSNALGQASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHSPV 75
+ ++ A G + + D P + V L W PP + +
Sbjct: 96 PLELRVTAASGAPRYHRVIHINE-VVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSH 154
Query: 76 TGYVLESHDKDEFMVWNKIETTS--TTYEVTKLTTKHEYMFRVAA 118
Y ++ ++E T ++ L + Y F V A
Sbjct: 155 IRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 3e-05
Identities = 97/666 (14%), Positives = 194/666 (29%), Gaps = 227/666 (34%)
Query: 131 TRYVVVKAPVDAEAPVIQEP--------LKDSVAGFQSSVTLECVVSGVPTPDIKW---- 178
+ ++ K +D +I L ++ Q + ++ V V + K+
Sbjct: 42 PKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSP 97
Query: 179 ----YKDDSL-----IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
+ S+ I+ R+ Y N+ F N S R
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVS-----RLQPY-------------- 137
Query: 230 LVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIG----VLALNVKSVSKLKWLARW 285
+++++ + A+ ++I + +G +AL+V K++
Sbjct: 138 ----LKLRQALLELRPAKN----VLI-------DGVLGSGKTWVALDVCLSYKVQ----- 177
Query: 286 TSDLESTAWFWW-FESKSTPA--VEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK 342
FW ++ ++P +E L KL + P+ S D +
Sbjct: 178 --CKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNW--------TSRSDHSSNIKLR 226
Query: 343 GKEIKESARHIITSRGTQRKLVIKRVTQDDET----DIG--VLAL-NVKSVSKLKWLDFG 395
I+ R ++ S+ + L++ Q+ + ++ +L K V+ DF
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----DFL 281
Query: 396 SGGWWFESKYKDDSLIKGR-NITYENNVARF-TVVNCSESSEGRYTCKATNEAGTAETRT 453
S SL +T + + ++C R
Sbjct: 282 SAA-----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT------------ 324
Query: 454 MWPGLPLSIVVSLRKADTRVKPPM----KRV-LQKLAVPFSYKTRTTNLQIQSPP----- 503
P +S+ R K V KL ++L + P
Sbjct: 325 ---TNPR--RLSIIAESIRDGLATWDNWKHVNCDKLT-----TIIESSLNVLEPAEYRKM 374
Query: 504 -QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KACRIFID 560
+ ++ +++ + LS+ W +K + + K +
Sbjct: 375 FDRLSVFPPSAHIPTILLSL--IWFDVIKSD----VM--------VVVNKLHKYSLVEKQ 420
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSL-----------------DLSLQVL-GYI 602
+ STI+I S+ Y +L DL L Y
Sbjct: 421 PKESTISIPSI-------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 603 ----------IQQQEKNSLKFTKV----------------ATLDPSTLQYTVENLRDKSE 636
I+ E+ +L F V A ++ T++ L+
Sbjct: 474 YSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---- 528
Query: 637 YYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGT----IRL 692
+Y +N P+ + A+ F+ + EE + K T I L
Sbjct: 529 FYKPYICDND----PKYERLVNAILD------------FLPKIEENLICSKYTDLLRIAL 572
Query: 693 MAKVKA 698
MA+ +A
Sbjct: 573 MAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 100/711 (14%), Positives = 199/711 (27%), Gaps = 238/711 (33%)
Query: 10 IVK-FEDKDLGDYTIS-LSNALGQASATTKVTLLSAPGAPDTPEIVGRSDS---SVTLHW 64
V F+ KD+ D S LS + I+ D+ ++ L W
Sbjct: 29 FVDNFDCKDVQDMPKSILSKE-------------------EIDHIIMSKDAVSGTLRLFW 69
Query: 65 RPPQDDGHSPVTGYVLESHDKD-EFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNA 121
V +V E + +F+ + I E + + + +
Sbjct: 70 TL-LSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRL-------- 119
Query: 122 IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS--VTLE--------CVVSGV 171
+N V K V P ++ L+ ++ + + V ++ V V
Sbjct: 120 -------YNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS------EGRYTCKATNEAGTAET 225
+ + + + NC+ + N ++
Sbjct: 171 -------CLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 226 SCTLLVQGKEIKESARHIITARGTQRKLVI------KRV-------------TQDDE-TD 265
S + ++ I+ R ++ ++ + L++ + T+ + TD
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 266 IGVLALNVKSVSKLKWLARWTSDLESTAWFW-WFESKSTPAVEFLSKLPS--VTLVP-HL 321
+ A +S T D E + + + + LP +T P L
Sbjct: 280 F-LSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCR-------PQDLPREVLTTNPRRL 330
Query: 322 G--DATFQVELSSPD--IQVKWLKKGKEIKESARHIITS--RGTQRKLVIKRVTQDDETD 375
+ + L++ D V K I+ S + + R +L +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAH 386
Query: 376 I--GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433
I +L+L WF+ D ++ N + ++++V +
Sbjct: 387 IPTILLSL-----------------IWFDVIKSDVMVV-------VNKLHKYSLVEK-QP 421
Query: 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTR 493
E + P + L + +VK + L + V Y
Sbjct: 422 KESTISI---------------PSIYL---------ELKVKLENEYALHRSIVD-HY--- 453
Query: 494 TTNLQIQSPPQQPAIKLVDS--------NLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN 545
N+ +D +LK+ + + + F +++
Sbjct: 454 --NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVFLDF-----RFLEQ 505
Query: 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL----GY 601
K +R D+ TA NA+GS L+ LQ L Y
Sbjct: 506 -------K------------------IRHDS-----TAWNASGS-ILNT-LQQLKFYKPY 533
Query: 602 IIQQQEKNS------LKF-TKVAT---LDPST--LQYTVENLRDKSEYYFQ 640
I K L F K+ T L+ L + E F+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA---LMAEDEAIFE 581
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-05
Identities = 34/201 (16%), Positives = 57/201 (28%), Gaps = 36/201 (17%)
Query: 49 TPEIV-GRSDSSVTLHWRPPQDD---------GHSPVTGYVLESHDKDEFMVWN----KI 94
TP +V G SVTL P + + + V E V N K
Sbjct: 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 95 ETTSTTY--EVTKLTTKHE--YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEP 150
+ +Y +++ L + Y ++ + S ++ +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQI-------STKTSAKLSSYTLRILRQLRNIQVTNH 116
Query: 151 LKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVVNCSESS 208
+ + L C V +W +L N+T + SS
Sbjct: 117 SQLFQNM-TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDP--------RISS 167
Query: 209 EGRYTCKATNEAGTAETSCTL 229
E YTC A N S +
Sbjct: 168 EQDYTCIAENAVSNLSFSVSA 188
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414 | Back alignment and structure |
|---|
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 12/144 (8%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYV--LESHDKDEFMVWNKIE----T 96
P V + + L W + V L+ + + W +I
Sbjct: 205 NELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENV 264
Query: 97 TSTTYEVTK-LTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
+T + + K Y+ RV A + T S ++ L DS
Sbjct: 265 KTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSF 324
Query: 156 AGFQSSVTLECVVSGVPTPDIKWY 179
+ + TP I+ Y
Sbjct: 325 -----HIYIGAPKQSGNTPVIQDY 343
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 8/110 (7%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKD 181
A V V A+ P + + + C SG P P + W ++
Sbjct: 87 YEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTS--NIRRIICSTSGGFPEPHLSWLEN 144
Query: 182 DSLIKGRNITYENNVAR--FTV---VNCSESSEGRYTCKATNEAGTAETS 226
+ N T + + V ++ + ++ + C +
Sbjct: 145 GEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQT 194
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 19/139 (13%), Positives = 33/139 (23%), Gaps = 32/139 (23%)
Query: 127 ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD---IKWYKDD- 182
+V+K PV+ + G + + C + + W
Sbjct: 103 IRLKNESMVMKKPVELWVLPEEPRDLRVRVG--DTTQMRCSIQSTEEKRVTKVNWMFSSG 160
Query: 183 ---------SLIKGRNITYENNVARF-----------------TVVNCSESSEGRYTCKA 216
S ++ RF + ES +G YTC
Sbjct: 161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSI 220
Query: 217 TNEAGTAETSCTLLVQGKE 235
+ + L V E
Sbjct: 221 YVGKLESRKTIVLHVVQDE 239
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 9e-05
Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 21/228 (9%)
Query: 19 GDYTISLSNALGQASATTKVTLLSAPGAP-----DTPEIVGRSDSSVTLHWRPPQDDGHS 73
+ GQ++A T +T+ P + + VG++ +TL + G +
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKN---LTLRCQVE---GGA 114
Query: 74 PVTGYVLESHDKDEFMVWNK---IETTSTTYEVTKLTTKHEYMFRVAAVNAIGT-GPASH 129
P + + E + + E T V H F + G
Sbjct: 115 PRANLTV-VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWY-KDDSLIKG 187
+ + + V + T+ C + G+ P + + +
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 188 RNITYENNVARFT---VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+TY N+ V + R TC + ET T+ +
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 12/130 (9%)
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
YE++ + + + G A V P E +
Sbjct: 47 NNRKVYELSNVQEDSQP--MCYSNCPDGQSTAKTFLT--VYWTP---ERVELAPLPSWQP 99
Query: 156 AGFQSSVTLECVVSGVPTPD---IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 212
G ++TL C V G + + + +K E TV+ + +
Sbjct: 100 VG--KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF 157
Query: 213 TCKATNEAGT 222
+C+ +
Sbjct: 158 SCRTELDLRP 167
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 9e-05
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 17/99 (17%)
Query: 160 SSVTLECVVSGVPTP--DIKWYKDDSLIKGRNITYENNVA-----RFTVV--------NC 204
S+ L+C +S + W + D L+ N +++ R +
Sbjct: 19 GSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSL 78
Query: 205 SESSEGRYTCK-ATNEAGTAETSCTLLVQGK-EIKESAR 241
+ + G Y C T GT L V + AR
Sbjct: 79 TVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 9e-05
Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 21/126 (16%)
Query: 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQ-EPLKDSVAGFQSSVTLECVVS-GVPTPDI 176
V A G A R V P EA + SV + C G P P I
Sbjct: 96 VRAGAAGTAEATARLNVFAKP---EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKI 152
Query: 177 KWYKDDSLIKGR----------NITYENNVARFTVVNC------SESSEGRYTCKATNEA 220
WY++ ++ + T ++ + + + + C A
Sbjct: 153 TWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212
Query: 221 GTAETS 226
Sbjct: 213 PEGRHG 218
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 4e-04
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 492 TRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD 551
T L + + P+ + L S + + G P P+I+W +NG +
Sbjct: 105 EATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRN-GNPAPKITWYRNGQRLEV 163
Query: 552 SKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
+ T+ S + + TST +
Sbjct: 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLR 196
|
| >3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEI--VGRSDSSVTLHWRPPQDDGHSPVTGY 78
++ S+ ++ L A + P + +++ W P Y
Sbjct: 195 VLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIEGTRMSIQWEKPVSAFPIHCFDY 254
Query: 79 VLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
++ H+ + +IE T ++ + +Y +V A
Sbjct: 255 EVKIHNTRN--GYLQIEKLMTNAFISIIDDLSKYDVQVRA 292
|
| >4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 9/158 (5%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLE---SHDKDEFMVWNKIETTSTTYEVTKLTTK--HE 111
+ L W PP+ VT Y ++ K T +++ T+ H+
Sbjct: 21 NMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQ 79
Query: 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV 171
Y RV A+ + + R+ V + S+ +T
Sbjct: 80 YYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSI---SVVLTAPEKWKRN 136
Query: 172 PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209
P + N++ N + T C +
Sbjct: 137 PEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHT 174
|
| >3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 20 DYTISL--SNALGQASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHS 73
YT+ + +++LG + L + P P V + + + W P ++
Sbjct: 81 GYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENN 140
Query: 74 PVTGYVLE---SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + S + ++ ++ + S + + Y +V G G S
Sbjct: 141 --LQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
|
| >2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 2e-04
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
S V S +S+TL W+ ++ S T + + + D + +
Sbjct: 6 SGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSS----NLNVSEPRA 61
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRY 133
+ L + Y V V G +
Sbjct: 62 VIPGLRSSTFYNITVCPVLGDIEGTPGFLQVH 93
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 2e-04
Identities = 28/224 (12%), Positives = 54/224 (24%), Gaps = 14/224 (6%)
Query: 22 TISLSNALGQASATTKVTLLSAPGAPDTPEI--VGRSDSSVTLHWRPPQDDGHS-PVTGY 78
S + T L+ P P + L W S ++
Sbjct: 84 VDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPG 143
Query: 79 VLE-----SHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
LE +D + + T+ T L Y+ RV A G+ + +
Sbjct: 144 DLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPS 203
Query: 132 RYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW---YKDDSLIKGR 188
++ Q + + ++ V + + YK
Sbjct: 204 KWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSA 263
Query: 189 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ E + R+ C+ + VQ
Sbjct: 264 VLLREEECSPVLREGLGSLHT-RHHCQIPVPDPATHGQYIVSVQ 306
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 4e-04
Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 11/116 (9%)
Query: 22 TISLSNALGQASATTKVTLLSAPGAPDTPEIV---------GRSDSSVTLHWRPPQDDGH 72
I + + V A + + + S +L W +
Sbjct: 289 QIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYE 348
Query: 73 SPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
+ ++ +K ET + + + L Y RV +
Sbjct: 349 HIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+SVT+ C + + + + K++S +N N ARF++ + +E GRY C
Sbjct: 20 NSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYR 78
Query: 218 NEAGTAETSCTLLV 231
+ G ++ S L +
Sbjct: 79 SPVGWSQPSDPLEL 92
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 13/127 (10%)
Query: 110 HEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169
Y FRV S+ + ++ E P I L C +
Sbjct: 95 GSYFFRVERG---RDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG---RPTRLSCSLP 148
Query: 170 GV----PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225
G P W + T + + T+ E TC+ + T
Sbjct: 149 GSCEAGPPLTFSWTGNALSPLDPETTRSSEL---TLTPRPEDHGTNLTCQMKRQGAQVTT 205
Query: 226 SCTLLVQ 232
T+ +
Sbjct: 206 ERTVQLN 212
|
| >3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLE---SHDKDEFMVWNKIETTSTTYEVTKLTTK--HE 111
+ L W+P + + Y ++ + + T + ++T T+
Sbjct: 20 NFHNILQWQPGRALT-GNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEP 78
Query: 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV 155
Y RV A +A S R+ + + S+
Sbjct: 79 YYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSL 122
|
| >3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRV 116
+ L W P + + F ++TT T + + L+ ++ RV
Sbjct: 14 NFKNILQWESPAFAKGQ--LTFTAQYLSYRIF-QDKCMQTTLTECDFSSLSKYGDHTLRV 70
Query: 117 AAVNAIGTGPASHNT 131
A A T
Sbjct: 71 RAEFADEHSDWVQIT 85
|
| >3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 12/110 (10%)
Query: 26 SNALGQASATTKVTLLSAPGAPDTPEIV-------GRSDSSVTLHWRPP----QDDGHSP 74
+N +G + + ++ PD P + + + W PP G
Sbjct: 82 TNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFT 141
Query: 75 VTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGT 124
+ Y + + T +++ L +Y+ +V G
Sbjct: 142 LL-YEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGY 190
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI--KGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+SVT+ C + + + + K+ S +N N ARF++ + +E GRY C
Sbjct: 20 NSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYY 78
Query: 218 NEAGTAETSCTLLVQ 232
+ AG +E S L +
Sbjct: 79 SPAGWSEPSDPLELV 93
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSL--IKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
VT+ C + + + + + SL + N +F + + + G+Y+C
Sbjct: 19 KQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYR 77
Query: 218 NEAGTAETSCTL 229
+E S L
Sbjct: 78 VGELWSEPSNLL 89
|
| >1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 123 | Back alignment and structure |
|---|
Score = 39.1 bits (90), Expect = 7e-04
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 19/107 (17%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE----------F 88
+ S PGAP T I ++ + L W PP + Y + F
Sbjct: 3 SGSSGPGAPSTVRIS-KNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVF 60
Query: 89 MVWNKIETTSTTYEVTKLTTKH-------EYMFRVAAVNAIGTGPAS 128
M TS T +L H +FR++A N G GPA+
Sbjct: 61 MRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPAT 107
|
| >3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 7e-04
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIV-GRSDSSVTLHWRPPQDDGHSPVTGYV 79
+++ +++ GQ S LL+ P P V + WR +D +
Sbjct: 75 FSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQYQISWRSDYEDPAFYMLKGK 134
Query: 80 LE--------SHDKDEFMVWNKIETTSTTYEVT--KLTTKHEYMFRVAAVNAIGTG 125
L+ I S + + + Y +V A G+
Sbjct: 135 LQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSS 190
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 41.3 bits (95), Expect = 8e-04
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 17/116 (14%)
Query: 21 YTISLSNALGQASATTKVTLLSAPGAPDTPEIV----GRSDSSVTLHWRPPQDDGHSPVT 76
+ + L T+ + PD P+ + ++ V + W P +P +
Sbjct: 188 VMVDAVHKLKYEQYTSSFFIRDII-KPDPPKNLQLKPLKNSRQVEVSWEYPDT-WSTPHS 245
Query: 77 GYVLE------SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
+ L K E + TS T + + V A + +
Sbjct: 246 YFSLTFCVQVQGKSKREKKDRVFTDKTSAT-----VICRKNASISVRAQDRYYSSS 296
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 803 | |||
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.98 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.98 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.98 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.98 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.97 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.97 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.97 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.97 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.97 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.97 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.97 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.97 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.97 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.96 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.96 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.96 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.96 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.96 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.96 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.96 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.96 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.96 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.96 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.96 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.96 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.96 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.96 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.96 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.96 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.95 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.95 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.95 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.95 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.95 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.95 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.95 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.95 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.95 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.95 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.95 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.95 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.95 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.95 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.94 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.94 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.94 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.94 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.94 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.93 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.93 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.93 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.93 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.93 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.92 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.92 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.92 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.92 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.92 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.91 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.91 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.91 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.91 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.91 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.91 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.91 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.9 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.9 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.89 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.89 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.89 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.89 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.89 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.88 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.88 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.88 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.88 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.87 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.87 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.87 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.87 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.86 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.86 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.86 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.86 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.86 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.86 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.86 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.86 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.85 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.85 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.85 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.85 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.85 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.85 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.85 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.85 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.85 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.85 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.84 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.84 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.84 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.83 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.83 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.83 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.83 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.83 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.83 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.83 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.82 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.82 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.82 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.82 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.82 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.82 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.82 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.82 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.82 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.81 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.81 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.81 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.81 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.81 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.81 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.81 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.81 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.81 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.8 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.8 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.8 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.8 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.8 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.79 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.79 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.79 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.79 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.79 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.79 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.79 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.79 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.78 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.78 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.78 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.78 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.78 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.78 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.78 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.78 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.78 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.78 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.78 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.78 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.78 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.78 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.77 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.77 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.77 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.77 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.77 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.77 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.77 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.77 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.77 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.77 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.77 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.76 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.76 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.76 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.76 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.76 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.76 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.76 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.76 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.76 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.76 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.76 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.76 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.75 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.75 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.75 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.75 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.75 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.75 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.75 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.75 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.75 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.75 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.75 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.75 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.75 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.75 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.74 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.74 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.74 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.74 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.74 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.74 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.73 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.73 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.73 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.73 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.72 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.72 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.72 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.72 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.72 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.72 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.72 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.72 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.72 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.72 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.72 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.72 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.72 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.72 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.71 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.71 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.71 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.71 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.71 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.71 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.7 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.7 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.7 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.7 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.7 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.7 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.7 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.7 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.69 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.69 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.69 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.69 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.69 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.69 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.68 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.68 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.68 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.68 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.68 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.68 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.67 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.67 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.67 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.67 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.66 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.66 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.66 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.66 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.66 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.66 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.66 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.65 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.65 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.65 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.65 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.64 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.64 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.64 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.64 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.64 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.64 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.64 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.64 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.64 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.63 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.63 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.63 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.63 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.63 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.63 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.63 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.63 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.62 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.62 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.62 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.62 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.62 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.61 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.61 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.61 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.61 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.6 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.6 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.6 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.6 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.6 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.59 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.59 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.59 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.59 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.59 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.59 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.59 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.59 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.59 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.59 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.58 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.58 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.58 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.58 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.57 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.57 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.57 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.57 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.57 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.56 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.56 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.56 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.56 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.56 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.56 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.56 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.56 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.55 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.55 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.55 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.55 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.55 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.55 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.54 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.54 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.54 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.54 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.54 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.54 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.53 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.53 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.53 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.53 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.53 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.53 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.52 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.52 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.52 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.52 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.52 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.52 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.52 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.52 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.51 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.51 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.51 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.51 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.51 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.5 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.5 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.5 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.5 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.5 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.49 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.49 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.49 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.49 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.49 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.48 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.48 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.48 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.48 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.47 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.47 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.47 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.46 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.46 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.46 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.46 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.45 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.45 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.45 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.45 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.45 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.45 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.45 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.45 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.45 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.45 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.44 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.44 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.44 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.44 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.44 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.43 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.43 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.43 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.43 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.42 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.42 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.42 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.42 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.42 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.42 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.41 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.41 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.41 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.41 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.41 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.41 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.4 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.4 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.4 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.4 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.4 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.4 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.39 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.39 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.39 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.39 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.39 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.38 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.38 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.38 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.37 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.37 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.37 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.37 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.36 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.36 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.36 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.36 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.35 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.35 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.35 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 99.34 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.34 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.33 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.33 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.33 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.32 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.32 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.31 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.31 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.31 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.3 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.3 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.3 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.3 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.3 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.29 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.29 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.29 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.28 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.28 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.28 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.28 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.28 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.28 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.27 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.27 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.26 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.26 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.26 | |
| 2eo1_A | 102 | OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024 | 99.26 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 99.26 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.26 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.25 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.24 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.24 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.24 |
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-59 Score=539.66 Aligned_cols=502 Identities=23% Similarity=0.376 Sum_probs=392.7
Q ss_pred CCceEEEEEeeccCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCC---C-ceEEEecCCeEEEEeeCCCCCCCCCeEEE
Q psy2776 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD---T-PEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78 (803)
Q Consensus 3 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~---~-~~~~~~~~~~v~l~c~~p~~~g~~~~~~~ 78 (803)
++.++|.|.+++.+|+|.|+|.|.|..|.......+.|...+.+|. . ..+....|..++|.|..... ..+...|
T Consensus 58 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~--p~~~v~W 135 (570)
T 3b43_A 58 NNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGS--EPLQVSW 135 (570)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESS--SSCEEEE
T ss_pred CCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccC--CCCEEEE
Confidence 4567999999999999999999999999887777887765443332 1 23445679999999997422 1222223
Q ss_pred EEEeecCCCceeE-EEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeee
Q psy2776 79 VLESHDKDEFMVW-NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157 (803)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~ 157 (803)
............. .........|.|.++..+|.|.|+|.|.|..|....+ ..+.+.. ...+|.+...+....+.
T Consensus 136 ~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~v~~--~~~pp~~~~~p~~~~v~ 210 (570)
T 3b43_A 136 YKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS---AKLTLSE--HEVPPFFDLKPVSVDLA 210 (570)
T ss_dssp EETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEEEC--CCCCCEEEECCCCBCCB
T ss_pred EECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEE---EEEEEcC--CCCCCccccCCceeEec
Confidence 2221111111000 1112235789999999999999999999988764222 2222222 13577887777888889
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
+|+.+.|.|.+.|.|.|.+.|+|++..+... .+....+...|.|.+++.+|+|.|+|.|.|..|....++.|.|..+
T Consensus 211 ~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~ 290 (570)
T 3b43_A 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290 (570)
T ss_dssp SBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCC
T ss_pred CCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecC
Confidence 9999999999999999999999999987632 3444556689999999999999999999999998888888887665
Q ss_pred ecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCc
Q psy2776 235 EIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPS 314 (803)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (803)
| .++..+..
T Consensus 291 p-----------------------------------------------------------------------~~~~~~~~ 299 (570)
T 3b43_A 291 P-----------------------------------------------------------------------RFIKKLEP 299 (570)
T ss_dssp C-----------------------------------------------------------------------EEEECCCS
T ss_pred C-----------------------------------------------------------------------cccccCCC
Confidence 3 11112222
Q ss_pred eeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeee
Q psy2776 315 VTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLD 393 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 393 (803)
...+.+|+.+.|.|.+ |.|.+.+.|+|+|.++..+.+..+..
T Consensus 300 ~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~------------------------------------- 342 (570)
T 3b43_A 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF------------------------------------- 342 (570)
T ss_dssp BCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEE-------------------------------------
T ss_pred ccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEE-------------------------------------
Confidence 3345679999999999 89999999999999887655443322
Q ss_pred cCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 394 FGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
..+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 343 -------------------------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~---------------------- 375 (570)
T 3b43_A 343 -------------------------VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS---------------------- 375 (570)
T ss_dssp -------------------------ETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEE----------------------
T ss_pred -------------------------ECCEEEEEECCCCcccCEEEEEEEEeCCCEEEE----------------------
Confidence 223456889999999999999999999998776
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~ 553 (803)
...|.|..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.
T Consensus 376 --------------------~~~l~V~~~P~~~~------~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~ 429 (570)
T 3b43_A 376 --------------------STSLKVKEPPVFRK------KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 429 (570)
T ss_dssp --------------------EEEECEECCCEECS------CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSS
T ss_pred --------------------EEEEEecCCCeeec------CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCC
Confidence 45566666664322 1234667889999999999999999999999999999888
Q ss_pred cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEccccc
Q psy2776 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633 (803)
Q Consensus 554 ~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 633 (803)
++.+........|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 430 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~--------------------------------- 476 (570)
T 3b43_A 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA--------------------------------- 476 (570)
T ss_dssp SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC---------------------------------
T ss_pred CEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEecc---------------------------------
Confidence 88887777778999999999999999999999999999988888865
Q ss_pred CceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeec
Q psy2776 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713 (803)
Q Consensus 634 ~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l 713 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+
T Consensus 477 --------------------------------------~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~ 518 (570)
T 3b43_A 477 --------------------------------------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI 518 (570)
T ss_dssp --------------------------------------CCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEEC
T ss_pred --------------------------------------CCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEe
Confidence 778888888888999999999999999999999999998554
Q ss_pred -cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 714 -LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 714 -~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
..+.++.+...+...+|.|.++ +.+|+|.|+|.|.|.+|.+++++.|.|.
T Consensus 519 ~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 519 VRESDNIWISYSENIATLQFSRA-EPANAGKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp CCCTTTEEECCCSSEEEEEESSC-CTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred ccCCCeEEEEECCCEEEEEECcC-CHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence 4566777766777889999999 7999999999999999999999999873
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-56 Score=540.84 Aligned_cols=606 Identities=18% Similarity=0.226 Sum_probs=437.1
Q ss_pred CceEEEEEeeccCC------cEEEEEEEEcCCCCc-eeeEEEEEecCCCCCCCc-eEEEecCCeEEEEeeCCCCCCCCCe
Q psy2776 4 DSATLTIVKFEDKD------LGDYTISLSNALGQA-SATTKVTLLSAPGAPDTP-EIVGRSDSSVTLHWRPPQDDGHSPV 75 (803)
Q Consensus 4 ~~~~L~I~~~~~~D------~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~p~~~-~~~~~~~~~v~l~c~~p~~~g~~~~ 75 (803)
.+++|.|.+++.+| +|.|+|.|.|..|.. +..+.|.+...+.....+ ......|..++|.|..|...+....
T Consensus 92 ~~g~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 171 (816)
T 3dmk_A 92 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 171 (816)
T ss_dssp STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEE
T ss_pred eCCcEEEcCCChHHccccccceEEEEEEecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEE
Confidence 45789999998887 999999999999975 556666665554433322 3456689999999987643222112
Q ss_pred EEEEEEeecCCCce------eEEEeeeeeeEEEEeccccCCe-EEEEEEEEccCcc-CCCcceeeEEEEcCCCCCCCCee
Q psy2776 76 TGYVLESHDKDEFM------VWNKIETTSTTYEVTKLTTKHE-YMFRVAAVNAIGT-GPASHNTRYVVVKAPVDAEAPVI 147 (803)
Q Consensus 76 ~~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~-g~y~c~a~~~~g~-~~~s~~~~~~~~~~~~~~~~p~i 147 (803)
..+|. ++..... ..+.....++.|.|.+++.+|+ |.|+|.+.+..+. ...+.....+.+..+....+|.+
T Consensus 172 ~v~W~--~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i 249 (816)
T 3dmk_A 172 VVSWH--TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249 (816)
T ss_dssp EEEEE--ETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBC
T ss_pred EEEEE--ecCceEeccccCCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCcc
Confidence 22222 1111100 0001112356899999999998 9999999875432 22222333455555554556766
Q ss_pred eccC--cCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-------eeEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 148 QEPL--KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-------RNITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 148 ~~~~--~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.... ....+.+|+.+.|.|.+.|.|.|.+.|+|++..... .+.. ....+|.|.+++.+|+|.|+|.|.|
T Consensus 250 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n 327 (816)
T 3dmk_A 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK--QVSGTLIIKDAVVEDSGKYLCVVNN 327 (816)
T ss_dssp CGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEE--EETTEEEECSCCGGGCEEEEEEEEC
T ss_pred ccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceE--eccceEEECCCCHhHCEEEEEEEEc
Confidence 5432 456788999999999999999999999996432211 1222 2235899999999999999999999
Q ss_pred CCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
..|.....+.|.|..++..
T Consensus 328 ~~g~~~~~~~l~V~~~~~~------------------------------------------------------------- 346 (816)
T 3dmk_A 328 SVGGESVETVLTVTAPLSA------------------------------------------------------------- 346 (816)
T ss_dssp SSCEEEEEEEEEECEEEEE-------------------------------------------------------------
T ss_pred CCCceEEEEEEEEcCCCce-------------------------------------------------------------
Confidence 9998877777777654200
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
. ..+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+. ..|.|.++..+|+|.|+
T Consensus 347 ----------~-~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~----------~~L~i~~v~~~d~G~Y~ 405 (816)
T 3dmk_A 347 ----------K-IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQ 405 (816)
T ss_dssp ----------E-EESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEE
T ss_pred ----------e-eCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC----------CEEEEcCCCHHHCEEEE
Confidence 0 01223445679999999999 89999999999999886532 36999999999999999
Q ss_pred EEEecccccee--------------------------------eeeeecCCCceeeeeeecCcceeee-eeeEE-----e
Q psy2776 378 VLALNVKSVSK--------------------------------LKWLDFGSGGWWFESKYKDDSLIKG-RNITY-----E 419 (803)
Q Consensus 378 c~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~ 419 (803)
|.+.|..+... +.|...+ .+.....|++++..+.. ..... .
T Consensus 406 C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g-~p~p~v~W~~~g~~l~~~~~~~~~~~~~~ 484 (816)
T 3dmk_A 406 CFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGG-NPTPEISWELDGKKIANNDRYQVGQYVTV 484 (816)
T ss_dssp EEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEEC-SSCCEEEEEETTEECCSCTTEEEEEEECT
T ss_pred EEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEec-CCCCEEEEEECCEECCCCCCcccccEEec
Confidence 99999765322 1121111 22345678888877653 22211 1
Q ss_pred --cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee
Q psy2776 420 --NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497 (803)
Q Consensus 420 --~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 497 (803)
.....|.|.++..+|+|.|+|.|.|..|.... ...|
T Consensus 485 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~------------------------------------------~~~l 522 (816)
T 3dmk_A 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEH------------------------------------------SAKL 522 (816)
T ss_dssp TSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEE------------------------------------------EEEE
T ss_pred CCCcEEEEEEeeccccCCEEEEEEEEECCCeEEE------------------------------------------EEEE
Confidence 12357999999999999999999999988766 4555
Q ss_pred ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec-cCcC
Q psy2776 498 QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV-RADT 576 (803)
Q Consensus 498 ~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~-~~ds 576 (803)
.|..+|.+.. .....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....+..+. .+.+|.|.++. .+|+
T Consensus 523 ~V~~~p~~~~-------~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~---~~~~l~i~~v~~~~d~ 592 (816)
T 3dmk_A 523 NVYGLPYIRQ-------MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF---PNGTLIIENVERNSDQ 592 (816)
T ss_dssp EECSSCEECC-------CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEEC---TTSEEEESSCCHHHHC
T ss_pred EEecCCeeEc-------cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEe---cCCeEEEEecCccccC
Confidence 6666653321 12466789999999999999999999999999998876665543 23579999998 5899
Q ss_pred eEEEEEEEcCCCC-eEEEEEEEEeeeE-----------------------eE-eeecccccEEEeeeeC-----------
Q psy2776 577 STYTVTATNAAGS-TSLDLSLQVLGYI-----------------------IQ-QQEKNSLKFTKVATLD----------- 620 (803)
Q Consensus 577 G~Y~C~a~n~~g~-~s~s~~l~V~~~p-----------------------~~-~~~~~~~~w~~~~~~~----------- 620 (803)
|.|+|.|.|..|. .+..+.|.|..+| +. ...+..+.|++.+...
T Consensus 593 G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~ 672 (816)
T 3dmk_A 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRV 672 (816)
T ss_dssp EEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEE
T ss_pred EEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEc
Confidence 9999999999886 4556777777665 11 1223378999987543
Q ss_pred -CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec
Q psy2776 621 -PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 699 (803)
Q Consensus 621 -~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~ 699 (803)
.....|.|.++..++.|.|+|.|.|..|....+..+.+. .+|.|...+....+.+|+.++|.|.+.|.
T Consensus 673 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~-----------~~P~~~~~~~~~~v~~G~~v~l~C~~~g~ 741 (816)
T 3dmk_A 673 GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY-----------VPPRWILEPTDKAFAQGSDAKVECKADGF 741 (816)
T ss_dssp TTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE-----------EEEEEEECCCCEEEETTCCEEEECEEEEE
T ss_pred CCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE-----------eCCceeeecccceecCCCcEEEEEEEecC
Confidence 223579999999999999999999999877544443332 27888888888899999999999999999
Q ss_pred CCCceEEeeCCeeccC-------CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 700 PAPSIVWFRNNKPLLS-------SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 700 p~~~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|.+.|++++..+.. +.+... .+. +|.|.++ +.+|+|.|+|.|.|.+|.+..++.+..+
T Consensus 742 P~p~i~W~k~~~~~~~~~~~~~~~~~~~~--~~~--~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~v~~~~~ 808 (816)
T 3dmk_A 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRV--EEG--TLHVDNI-QKTNEGYYLCEAINGIGSGLSAVIMISV 808 (816)
T ss_dssp SCCEEECCEECSSSTTCCBCCCCBTTEEE--ETT--EEEECSC-CGGGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCCeEEEEecCCCCCccccccccCCCEEe--cCC--EEEECcC-ChhhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence 9999999998755432 222221 222 6999999 7999999999999999999988888764
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-55 Score=511.96 Aligned_cols=536 Identities=17% Similarity=0.233 Sum_probs=387.8
Q ss_pred ceEEEEEeeccCCcEEEEEEEEcCC-CCceeeEEEEEecCCCCCCC---ceEEEecCCeEEEEeeCCCCCCCCCeEEEEE
Q psy2776 5 SATLTIVKFEDKDLGDYTISLSNAL-GQASATTKVTLLSAPGAPDT---PEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL 80 (803)
Q Consensus 5 ~~~L~I~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~p~~---~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~ 80 (803)
+++|.|.+++.+|+|.|+|.+.|.. +..+..+.|.|..++.+|.. .......|..++|.|.... ..+...|..
T Consensus 70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~---p~~~v~W~~ 146 (642)
T 1e07_A 70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET---QDATYLWWV 146 (642)
T ss_pred CCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCC---CCeeEEEEE
Confidence 4689999999999999999999864 45567788888876555432 1233456888999999753 223223332
Q ss_pred EeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCC
Q psy2776 81 ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160 (803)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~ 160 (803)
........ ........+..|.|.+++.+|.|.|+|.+.|..|.. .+....+.+...| ..+.+ .+.+..+.+|+
T Consensus 147 ~g~~l~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p---~~~~~--~~~~~~~~~G~ 219 (642)
T 1e07_A 147 NNQSLPVS-PRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGP---DAPTI--SPLNTSYRSGE 219 (642)
T ss_pred CCeECCCC-CceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCc-ccceEEEEEEeCC---CCcEE--ecCCcccccCC
Confidence 22222111 112222346789999999999999999999987752 2333333333222 22333 34566788999
Q ss_pred cEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeeccccc
Q psy2776 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESA 240 (803)
Q Consensus 161 ~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~ 240 (803)
.+.|.|.+.|.|.+.+.|++++..+.. ...|.|.+++.+|+|.|+|.|.|..|....+..+.+......+.
T Consensus 220 ~~~l~C~~~g~p~~~i~W~~~g~~i~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~- 290 (642)
T 1e07_A 220 NLNLSCHAASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK- 290 (642)
T ss_pred EEEEEEEcCCCCCcEEEEEECCeEccc--------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCC-
Confidence 999999999999999999999987632 35699999999999999999999998766554444333210000
Q ss_pred ceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecc
Q psy2776 241 RHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPH 320 (803)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (803)
+ ++ ..+....+..
T Consensus 291 -----------------------------------------------------------------p-~i-~~~~~~~~~~ 303 (642)
T 1e07_A 291 -----------------------------------------------------------------P-FI-TSNNSNPVED 303 (642)
T ss_pred -----------------------------------------------------------------C-EE-EcCCceeEec
Confidence 0 00 0122334555
Q ss_pred ccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee-----eeee--
Q psy2776 321 LGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK-----LKWL-- 392 (803)
Q Consensus 321 g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~-----~~~~-- 392 (803)
|+.+.|.|.+ +.| +.+.|+++|..+..+.++.+..++ ..|.|.++..+|+|.|+|.+.|..+... +...
T Consensus 304 g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 380 (642)
T 1e07_A 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380 (642)
T ss_pred CCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCC--CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcC
Confidence 8889999999 555 799999999999877776665443 4799999999999999999999776421 1111
Q ss_pred ---------------------ecC--CCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceee
Q psy2776 393 ---------------------DFG--SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449 (803)
Q Consensus 393 ---------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~ 449 (803)
.|. +.+.....|+++|..+. ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 381 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 452 (642)
T 1e07_A 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ--------HTQELFISNITEKNSGLYTCQANNSASGH 452 (642)
T ss_pred CCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC--------CCceEEEccCChhhCeEEEEEEEcCCCCC
Confidence 111 11233456777776553 23469999999999999999999998876
Q ss_pred eeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEE
Q psy2776 450 ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVE 529 (803)
Q Consensus 450 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~ 529 (803)
..+. .+.+.+..++..|.+.. .....+.+|+.+.|.
T Consensus 453 ~~s~----------------------------------------~~~v~v~~~~~~p~i~~----~~~~~v~~g~~v~l~ 488 (642)
T 1e07_A 453 SRTT----------------------------------------VKTITVSAELPKPSISS----NNSKPVEDKDAVAFT 488 (642)
T ss_pred cccc----------------------------------------eEEEEEeccCCCceEec----CCceeecCCCeEEEE
Confidence 6532 22333333222222211 124567899999999
Q ss_pred EEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE-EEEEEEEeeeEeEeeec
Q psy2776 530 VKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS-LDLSLQVLGYIIQQQEK 608 (803)
Q Consensus 530 C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s-~s~~l~V~~~p~~~~~~ 608 (803)
|.+.+ |.+.+.|+|+|..+..+.++.+.. ++..|.|.++..+|+|.|+|.|.|..|... .++.|.|...
T Consensus 489 C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~------- 558 (642)
T 1e07_A 489 CEPEA-QNTTYLWWVNGQSLPVSPRLQLSN--GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG------- 558 (642)
T ss_pred EECCC-CCcEEEEEECCEeCCCCCcEEEcC--CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeC-------
Confidence 99995 889999999999998877665543 457999999999999999999999998754 4678888653
Q ss_pred ccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC
Q psy2776 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688 (803)
Q Consensus 609 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~ 688 (803)
|+.+...+....+.+|+
T Consensus 559 ---------------------------------------------------------------p~~~~~~~~~~~v~~g~ 575 (642)
T 1e07_A 559 ---------------------------------------------------------------PDTPIISPPDSSYLSGA 575 (642)
T ss_pred ---------------------------------------------------------------CCcceecCCceeEEcCC
Confidence 23344455667889999
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
.+.|.|.+.|.|.|.+.|++||.++..+ ..|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|+|.
T Consensus 576 ~~~l~C~~~g~p~p~v~W~~~g~~i~~~-----------~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v~ 641 (642)
T 1e07_A 576 NLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVLFIAKI-TPNNNGTYACFVSNLATGRNNSIVKSITVS 641 (642)
T ss_pred cEEEEEEeccCCCCeEEEEECCEECccC-----------ceEEECcc-cccCCeEEEEEEEecccCcceeEEEEEEEc
Confidence 9999999999999999999999988532 36999999 789999999999999999999999999763
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-54 Score=493.71 Aligned_cols=461 Identities=25% Similarity=0.379 Sum_probs=367.2
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
..||.|..++.++.+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .+...++..+|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (570)
T 3b43_A 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82 (570)
T ss_dssp CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence 46888988889999999999999999999999999999999887532 344455678999999999999999999999
Q ss_pred CCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
..|....+..|.|.....+
T Consensus 83 ~~g~~~~~~~l~v~~~~~~------------------------------------------------------------- 101 (570)
T 3b43_A 83 SVGAVASSAVLVIKERKLP------------------------------------------------------------- 101 (570)
T ss_dssp TTEEEEEEEEEEECCCCCC-------------------------------------------------------------
T ss_pred CCceEEEEEEEEECCCCCC-------------------------------------------------------------
Confidence 9998877777776543110
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
+.|... +.......|+.+.|.|.+ |.|.+++.|+|||..+..+.............|.|.++..+|+|.|+
T Consensus 102 -------p~~~~~-~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 173 (570)
T 3b43_A 102 -------PSFARK-LKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN 173 (570)
T ss_dssp -------CEESSC-CCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred -------Cccccc-CCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEE
Confidence 111111 122334569999999999 88999999999999998777666555566678999999999999999
Q ss_pred EEEecccccee--------------------------------eeeeecCCCceeeeeeecCcceeee---eeeEEecCe
Q psy2776 378 VLALNVKSVSK--------------------------------LKWLDFGSGGWWFESKYKDDSLIKG---RNITYENNV 422 (803)
Q Consensus 378 c~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 422 (803)
|.|.|..+... +.|...+ .+.....|++++..+.. ..+....+.
T Consensus 174 C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~i~W~k~g~~i~~~~~~~~~~~~~~ 252 (570)
T 3b43_A 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTG-TAPIKITWAKDNREIRPGGNYKMTLVENT 252 (570)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEES-SSCCEEEEEETTEECCTTSSEEEEEETTE
T ss_pred EEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEE-CCCCEEEEEECCEECcCCCcEEEEEECCE
Confidence 99999765432 1111111 12335679999887652 345566777
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 502 (803)
..|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..+
T Consensus 253 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~------------------------------------------~~~l~V~~~ 290 (570)
T 3b43_A 253 ATLTVLKVTKGDAGQYTCYASNVAGKDSC------------------------------------------SAQLGVQEP 290 (570)
T ss_dssp EEEEESSBCGGGCEEEEEEEEETTEEEEE------------------------------------------EEEECCBCC
T ss_pred EEEEEcccCcccCEEEEEEEECCCCcEEE------------------------------------------EEEEEeecC
Confidence 89999999999999999999999988766 556677777
Q ss_pred CCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
|.+.. .......+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++++........|.|.+++.+|+|.|+|.
T Consensus 291 p~~~~-----~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 365 (570)
T 3b43_A 291 PRFIK-----KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365 (570)
T ss_dssp CEEEE-----CCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred Ccccc-----cCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEE
Confidence 65321 1112345788999999999999999999999999999988888877777788999999999999999999
Q ss_pred EEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 583 ATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 583 a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|.|..|..+.++.|.|..
T Consensus 366 a~N~~g~~~~~~~l~V~~-------------------------------------------------------------- 383 (570)
T 3b43_A 366 AHNAAGSASSSTSLKVKE-------------------------------------------------------------- 383 (570)
T ss_dssp EEBTTBCCEEEEEECEEC--------------------------------------------------------------
T ss_pred EEeCCCEEEEEEEEEecC--------------------------------------------------------------
Confidence 999999999999998866
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|.++..+.++.+..++....|.|.++ +.+|+|
T Consensus 384 ---------~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v-~~~D~G 453 (570)
T 3b43_A 384 ---------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV-DSADIG 453 (570)
T ss_dssp ---------CCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSC-CGGGCE
T ss_pred ---------CCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCC-ChhhCE
Confidence 5666666677788899999999999999999999999999999888998888888889999999 799999
Q ss_pred eEEEEEEccCcceeeeEEEEEEeeccC---CCCCcccCCccceeeeeeeeEE
Q psy2776 743 DYKVVATNELGSATHGARVTVDVEKVG---RPSINSIDIDLNHVHYLAQSTE 791 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~---pp~~~~~~~~~~~~~~~~~~~~ 791 (803)
.|+|.|.|.+|.++..+.|.|..++.. +..+.....+..+|+|.+.|.|
T Consensus 454 ~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p 505 (570)
T 3b43_A 454 EYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAE 505 (570)
T ss_dssp EEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCS
T ss_pred EEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCC
Confidence 999999999999999999998653321 1122222333445666655543
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=503.14 Aligned_cols=560 Identities=17% Similarity=0.197 Sum_probs=108.2
Q ss_pred ceEEEEEeeccCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCC-----Cc-eEEEecC--CeEEEEeeCCCCCCCCCeE
Q psy2776 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD-----TP-EIVGRSD--SSVTLHWRPPQDDGHSPVT 76 (803)
Q Consensus 5 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~-----~~-~~~~~~~--~~v~l~c~~p~~~g~~~~~ 76 (803)
.++|.|.+++.+|+|.|+|.+. .+..+..+.|.|.++..+.. .+ .+...+| ..++|.|.... +...+
T Consensus 85 ~~~l~I~~~~~~d~G~Y~C~~~--~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~--p~~~v- 159 (772)
T 3v2a_R 85 CKTLTIPKVIGNDTGAYKCFYR--ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI--SNLNV- 159 (772)
T ss_dssp -------------------------------------------------CEEEEEEESSCCCEEEECCCCSC--SSCCE-
T ss_pred EEEEEECCCcHhhCEeEEEEEc--CCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC--CCcEE-
Confidence 5699999999999999999997 33334556666654333221 11 2344568 88999999753 22222
Q ss_pred EEEEE--eec--CC-CceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccC
Q psy2776 77 GYVLE--SHD--KD-EFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151 (803)
Q Consensus 77 ~~~~~--~~~--~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~ 151 (803)
.|..+ ... .. .... ......|.|.+++.+|.|.|+|.+.+..+. ..+...... +.. ..++.+...+
T Consensus 160 ~w~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~s~~~~~~-v~~---~~~~~v~~~~ 230 (772)
T 3v2a_R 160 SLCARYPEKRFVPDGNRIS----WDSKKGFTIPSYMISYAGMVFCEAKINDES-YQSIMYIVV-VVG---YRIYDVVLSP 230 (772)
T ss_dssp EEEEETTTEEECCCSSSCE----EETTTEEEEEGGGTTTCSEEEEEEEETTEE-EECCEEEEE-EEC---CCEEEEEEEC
T ss_pred EEEecCCCccccCCCceee----cCCCCCeEecCCChhhCeEEEEEEEECCce-EEEEEEEEE-Eec---CccceeeeCC
Confidence 22221 111 00 0011 123567999999999999999999875332 222222222 211 1233344433
Q ss_pred -cCeeeecCCcEEEEEEECc--cCCCeeEEEEcCeeccceeE-----------EEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 152 -KDSVAGFQSSVTLECVVSG--VPTPDIKWYKDDSLIKGRNI-----------TYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 152 -~~~~v~~G~~~~L~C~~~g--~p~p~i~W~~~~~~~~~~~~-----------~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
....+.+|+.++|.|.+.+ .|.+.+.|++++..+..... ........|.|.+++.+|+|.|+|.+.
T Consensus 231 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 310 (772)
T 3v2a_R 231 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310 (772)
T ss_dssp CSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEE
T ss_pred CCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEE
Confidence 4478999999999999987 45668999999876543211 112245689999999999999999999
Q ss_pred cCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 218 NEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 218 n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
|..+....++.|.|..+|...
T Consensus 311 ~~~~~~~~~~~l~V~~~p~~~----------------------------------------------------------- 331 (772)
T 3v2a_R 311 SGLMTKKNSTFVRVHEKPFVA----------------------------------------------------------- 331 (772)
T ss_dssp CSSCEEEEEEEEEEECCCC-------------------------------------------------------------
T ss_pred cCCcceeEEEEEEEeCCCeeE-----------------------------------------------------------
Confidence 998887778888887653110
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccE
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDI 376 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 376 (803)
+....+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......
T Consensus 332 ----------~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~----------------------- 378 (772)
T 3v2a_R 332 ----------FGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK----------------------- 378 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------eccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc-----------------------
Confidence 00011123345679999999999 88999999999998876521110
Q ss_pred EEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccC
Q psy2776 377 GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWP 456 (803)
Q Consensus 377 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~ 456 (803)
+...|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 379 --------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~--- 411 (772)
T 3v2a_R 379 --------------------------------------------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSH--- 411 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------cceeEEEecCChhcCceEEEEEEECCcCeEEEE---
Confidence 123488899999999999999999887765432
Q ss_pred CCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC
Q psy2776 457 GLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP 536 (803)
Q Consensus 457 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p 536 (803)
.+.|.|..+|.+........ ...+.+|+.+.|.|.+.|.|
T Consensus 412 -------------------------------------~~~l~v~~~P~~~~~~~~~~---~~~~~~g~~~~l~C~~~g~p 451 (772)
T 3v2a_R 412 -------------------------------------VVSLVVYVPPQIGEKSLISP---VDSYQYGTTQTLTCTVYAIP 451 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------EEEEEEecCCcccccccCCC---ccccCCCCcEEEEeEeccCC
Confidence 45666677776543321111 12378899999999999999
Q ss_pred CCe-eEEeeCCee--------------------------------ecCC-CcEEEEec--CCeEEEEEeeeccCcCeEEE
Q psy2776 537 RPE-ISWMKNGAE--------------------------------ITDS-KACRIFID--EETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 537 ~~~-v~W~~~g~~--------------------------------i~~~-~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~ 580 (803)
.|. +.|++++.. +... .+..+... ...+.|.|.++ +|+|.|+
T Consensus 452 ~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~ 529 (772)
T 3v2a_R 452 PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYK 529 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEE
Confidence 997 999997432 1110 01111111 11257888876 7999999
Q ss_pred EEEEcCCCCeEEEEEEEEeeeE---------------------eEeeecccccEEEeeeeC-------------------
Q psy2776 581 VTATNAAGSTSLDLSLQVLGYI---------------------IQQQEKNSLKFTKVATLD------------------- 620 (803)
Q Consensus 581 C~a~n~~g~~s~s~~l~V~~~p---------------------~~~~~~~~~~w~~~~~~~------------------- 620 (803)
|.|.|..|.....+.|.|..+| +...+...+.|++.+...
T Consensus 530 C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 609 (772)
T 3v2a_R 530 CEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccce
Confidence 9999999999999988888655 223344678899876321
Q ss_pred ------------CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC
Q psy2776 621 ------------PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688 (803)
Q Consensus 621 ------------~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~ 688 (803)
.....|.|.++..++.|.|+|.|.|..|....+....+... ...+|.|...+....+.+|+
T Consensus 610 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~-------~~~~P~~~~~~~~~~v~~g~ 682 (772)
T 3v2a_R 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL-------ERVAPTITGNLENQTTSIGE 682 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccc-------ccCCCEeecCCCceEEeCCC
Confidence 01234889999999999999999997765543322222221 12478888888888899999
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
++.|.|.+.|.|.|.|.|+|+|.++..+.++.+.. ...+|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|..++.
T Consensus 683 ~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~ 759 (772)
T 3v2a_R 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 759 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcC--CCcEEEECcC-CHHHCEEEEEEEEeCCcceeEEEEEEEECCCC
Confidence 99999999999999999999999998776654433 3458999999 79999999999999999999999999976544
Q ss_pred C
Q psy2776 769 G 769 (803)
Q Consensus 769 ~ 769 (803)
.
T Consensus 760 ~ 760 (772)
T 3v2a_R 760 K 760 (772)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=454.08 Aligned_cols=461 Identities=16% Similarity=0.216 Sum_probs=344.4
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~ 177 (803)
+..|.|.+++.+|+|.|+|.+.+..... ..... .+.+..+ ..+|.+... ....+.+|+.+.|.|.+.+ |.+.+.
T Consensus 70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~-~l~V~~~--~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~v~ 143 (642)
T 1e07_A 70 NASLLIQNIIQNDTGFYTLHVIKSDLVN-EEATG-QFRVYPE--LPKPSISSN-NSKPVEDKDAVAFTCEPET-QDATYL 143 (642)
T ss_pred CCcEEECCCCcccCcEEEEEEEcCCCeE-EEEEE-EEEeccc--CCCCcEEcc-CceeEecCCcEEEEEECCC-CCeeEE
Confidence 4689999999999999999998753221 11112 2223221 345666553 3456788999999999998 889999
Q ss_pred EEEcCeeccc-eeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEE
Q psy2776 178 WYKDDSLIKG-RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVI 255 (803)
Q Consensus 178 W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 255 (803)
|++++..+.. .++........|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..+.
T Consensus 144 W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~---------------- 207 (642)
T 1e07_A 144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT---------------- 207 (642)
T ss_pred EEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcE----------------
Confidence 9999988864 344444455789999999999999999999988864 3456777765421100
Q ss_pred eeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc
Q psy2776 256 KRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~ 334 (803)
+ .+....+.+|+.+.|.|.+ +.|.
T Consensus 208 ----------------------------------------------------~---~~~~~~~~~G~~~~l~C~~~g~p~ 232 (642)
T 1e07_A 208 ----------------------------------------------------I---SPLNTSYRSGENLNLSCHAASNPP 232 (642)
T ss_pred ----------------------------------------------------E---ecCCcccccCCEEEEEEEcCCCCC
Confidence 0 1122335679999999999 8999
Q ss_pred eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeee
Q psy2776 335 IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414 (803)
Q Consensus 335 ~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (803)
+.+.|+++|..+...
T Consensus 233 ~~i~W~~~g~~i~~~----------------------------------------------------------------- 247 (642)
T 1e07_A 233 AQYSWFVNGTFQQST----------------------------------------------------------------- 247 (642)
T ss_pred cEEEEEECCeEcccC-----------------------------------------------------------------
Confidence 999999998877321
Q ss_pred eeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccce
Q psy2776 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494 (803)
Q Consensus 415 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (803)
..|.|.+++.+|+|.|+|.|.|..|....+. .
T Consensus 248 --------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~----------------------------------------~ 279 (642)
T 1e07_A 248 --------QELFIPNITVNNSGSYTCQAHNSDTGLNRTT----------------------------------------V 279 (642)
T ss_pred --------CceEEecccccCCeEEEEEEEeCCCceEEee----------------------------------------e
Confidence 1277888899999999999999887665432 2
Q ss_pred eeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccC
Q psy2776 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574 (803)
Q Consensus 495 ~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~ 574 (803)
+.|.|..+|..|.+.. .....+..|+.+.|.|.+.+.| +.+.|+++|..+..+.++.+.. ++..|.|.++..+
T Consensus 280 ~~v~v~~~~~~p~i~~----~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~--~~~~L~i~~~~~~ 352 (642)
T 1e07_A 280 TTITVYAEPPKPFITS----NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN--DNRTLTLLSVTRN 352 (642)
T ss_pred EEEEEEccCCCCEEEc----CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeC--CCCEEEEeccCcc
Confidence 3344444333332221 1134456688899999999976 6999999999987776665543 4578999999999
Q ss_pred cCeEEEEEEEcCCCCe-EEEEEEEEeeeE-----------------------eEeeecccccEEEeeeeCCccceEEEcc
Q psy2776 575 DTSTYTVTATNAAGST-SLDLSLQVLGYI-----------------------IQQQEKNSLKFTKVATLDPSTLQYTVEN 630 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~-s~s~~l~V~~~p-----------------------~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 630 (803)
|+|.|+|.|.|..|.. +..+.|.|...| +...+...+.|++.+........|.|.+
T Consensus 353 d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~ 432 (642)
T 1e07_A 353 DVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISN 432 (642)
T ss_pred cCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEcc
Confidence 9999999999999874 556788887554 2234556899999988887788899999
Q ss_pred cccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC
Q psy2776 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN 710 (803)
Q Consensus 631 ~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~ 710 (803)
+...+.|.|+|.|.|..|....+....+.... ...+|.+.. .....+.+|+++.|.|.+.+ |.+.+.|+++|
T Consensus 433 ~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~------~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g 504 (642)
T 1e07_A 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSA------ELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNG 504 (642)
T ss_pred CChhhCeEEEEEEEcCCCCCcccceEEEEEec------cCCCceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECC
Confidence 99999999999999999987665444433321 223455443 44567889999999999994 88999999999
Q ss_pred eeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee-eeEEEEEEee
Q psy2776 711 KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVDVE 766 (803)
Q Consensus 711 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~ 766 (803)
.++..+.++.+..++ ..|.|.++ +.+|+|.|+|.|.|..|... ..+.|.|...
T Consensus 505 ~~l~~~~~~~~~~~~--~~L~i~~v-~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 558 (642)
T 1e07_A 505 QSLPVSPRLQLSNGN--RTLTLFNV-TRNDARAYVCGIQNSVSANRSDPVTLDVLYG 558 (642)
T ss_pred EeCCCCCcEEEcCCC--cEEEEeec-ChhcCceEEEEeEcCCCCccCCCEEEEEEeC
Confidence 999888877665443 48999999 79999999999999999864 4688888643
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-49 Score=471.39 Aligned_cols=596 Identities=14% Similarity=0.181 Sum_probs=403.7
Q ss_pred EEEecCCeEEEEeeCCCCCCC-CCeEEEEE-EeecCCCceeEEEeeeeeeEEEEeccccCC------eEEEEEEEEccCc
Q psy2776 52 IVGRSDSSVTLHWRPPQDDGH-SPVTGYVL-ESHDKDEFMVWNKIETTSTTYEVTKLTTKH------EYMFRVAAVNAIG 123 (803)
Q Consensus 52 ~~~~~~~~v~l~c~~p~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g~y~c~a~~~~g 123 (803)
+....|..++|.|.+. |. .+...|.. ........-.+ .....++.|.|.++...| .|.|+|.|.|..|
T Consensus 49 ~~~~~g~~~~l~C~a~---g~p~p~~~W~k~~g~~~~~~~~~-~~~~~~g~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G 124 (816)
T 3dmk_A 49 IDFSNSTGAEIECKAS---GNPMPEIIWIRSDGTAVGDVPGL-RQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124 (816)
T ss_dssp EEEETTTCEEEECEEE---EESCCEEEEEETTSCBCCCBTTT-BEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred EEEECCCCeEEEeeec---CCCCCEEEEEeCCCCCccCCCce-EEEeeCCcEEEcCCChHHccccccceEEEEEEecCcc
Confidence 4456789999999863 22 22222221 11111110001 111236789999998876 8999999999988
Q ss_pred cCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccC-C--CeeEEEEcCeecc------ceeEEEec
Q psy2776 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP-T--PDIKWYKDDSLIK------GRNITYEN 194 (803)
Q Consensus 124 ~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p-~--p~i~W~~~~~~~~------~~~~~~~~ 194 (803)
... +....+. + ..++.+...+....+.+|+.+.|.|.+.+.+ . +.+.|++++..+. ..++...
T Consensus 125 ~~~-S~~~~v~-~-----~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~- 196 (816)
T 3dmk_A 125 SII-SRDVHVR-A-----VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL- 196 (816)
T ss_dssp EEE-EEEEEEE-E-----ECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEEC-
T ss_pred eEE-ccceEEE-E-----EEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEe-
Confidence 532 2232222 2 1233344455667889999999999987533 2 6899999876432 2233332
Q ss_pred CeeEEEEecCCCCcc-eEEEEEEEcCCcCee-e---EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEE
Q psy2776 195 NVARFTVVNCSESSE-GRYTCKATNEAGTAE-T---SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~-~---s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (803)
....|.|.+++.+|+ |.|+|.+.|..+... . ...|.|.....
T Consensus 197 ~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~--------------------------------- 243 (816)
T 3dmk_A 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS--------------------------------- 243 (816)
T ss_dssp TTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCS---------------------------------
T ss_pred cCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCC---------------------------------
Confidence 234799999999999 999999998654322 1 12344433210
Q ss_pred EEEEeeccccceeeccccccccceeeeeeccCCCcccccccc-CCceeeeccccceeEEEEe-cCCceeeEEeecCeecc
Q psy2776 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK-LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIK 347 (803)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~ 347 (803)
...+.+... .+....+..|+.+.|.|.+ +.|.+.+.|+|++....
T Consensus 244 ---------------------------------~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~ 290 (816)
T 3dmk_A 244 ---------------------------------SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTT 290 (816)
T ss_dssp ---------------------------------CCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSS
T ss_pred ---------------------------------CCCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCc
Confidence 011111111 1234566789999999999 89999999999644322
Q ss_pred c------cceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee--------------------------eecC
Q psy2776 348 E------SARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW--------------------------LDFG 395 (803)
Q Consensus 348 ~------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~--------------------------~~~~ 395 (803)
. ..+.. .. ...|.|.++..+|+|.|+|.+.|..+...... +.|.
T Consensus 291 ~~~~~~~~~~~~-~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~ 366 (816)
T 3dmk_A 291 RKQAVVLNDRVK-QV---SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 366 (816)
T ss_dssp CEEECCCSSSEE-EE---TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEE
T ss_pred cCcceecCCceE-ec---cceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEE
Confidence 1 12221 11 23799999999999999999999776433111 0010
Q ss_pred --CCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 396 --SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 396 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
+.+.....|++++..+.. ....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 367 ~~g~p~~~v~W~k~g~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~--------------------- 418 (816)
T 3dmk_A 367 YTGNPIKTVSWMKDGKAIGH-------SESVLRIESVKKEDKGMYQCFVRNDRESAEAS--------------------- 418 (816)
T ss_dssp EEEECCCEEEEEETTEECSC-------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEC---------------------
T ss_pred EeccCCCEEEEEECCEECCC-------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEE---------------------
Confidence 012334567887766542 23569999999999999999999998876662
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~ 553 (803)
..+.+......|.+. .......+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.
T Consensus 419 ---------------------~~l~v~~~~~~p~i~---~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~ 474 (816)
T 3dmk_A 419 ---------------------AELKLGGRFDPPVIR---QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474 (816)
T ss_dssp ---------------------CEEECCCSSCCCEEE---EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCT
T ss_pred ---------------------EEEEEccccCCCceE---ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCC
Confidence 233332211112121 11234678899999999999999999999999999998776
Q ss_pred cEEEEe----c-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE---------------------eEeee
Q psy2776 554 ACRIFI----D-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI---------------------IQQQE 607 (803)
Q Consensus 554 ~~~~~~----~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p---------------------~~~~~ 607 (803)
++.... . ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+| +...+
T Consensus 475 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p 554 (816)
T 3dmk_A 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYP 554 (816)
T ss_dssp TEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSS
T ss_pred CcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCC
Confidence 655432 1 123579999999999999999999999999999999998776 22334
Q ss_pred cccccEEEeeeeCC--------ccceEEEcccc-cCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEe-
Q psy2776 608 KNSLKFTKVATLDP--------STLQYTVENLR-DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE- 677 (803)
Q Consensus 608 ~~~~~w~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~- 677 (803)
...+.|.+.+.... ....+.|.++. ..+.|.|+|.|.|..|..... ...+.... +|.+..
T Consensus 555 ~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~-~~~v~v~~---------~p~~~~~ 624 (816)
T 3dmk_A 555 IDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARG-SLEVQVMV---------LPRIIPF 624 (816)
T ss_dssp EEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEE-EEEEEEEC---------CCCCBCC
T ss_pred CCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeee-eEEEEEec---------CCccccc
Confidence 45788999875432 24578899997 689999999999998865322 11111111 222222
Q ss_pred ccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
.+....+.+|+.++|.|.+.+.|.+ .+.|+++|..+..+..+.+... .....|.|.++ +.+|+|.|+|.|.|.+|..
T Consensus 625 ~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~~ 703 (816)
T 3dmk_A 625 AFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAV-EASHAGNFTCHARNLAGHQ 703 (816)
T ss_dssp CCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESC-CGGGCEEEEEEEECSSCEE
T ss_pred cccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccC-ChhhCEEEEEEEEeCCccE
Confidence 2234568899999999999876655 8999999999876655554433 45678999999 7999999999999999999
Q ss_pred eeeEEEEEEeeccC---CCCCcccCCccceeeeeeeeEEE
Q psy2776 756 THGARVTVDVEKVG---RPSINSIDIDLNHVHYLAQSTEV 792 (803)
Q Consensus 756 ~~~~~l~V~~~~~~---pp~~~~~~~~~~~~~~~~~~~~~ 792 (803)
+.++.|.|.+++.. |........+..+|+|.+.|.|-
T Consensus 704 ~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~ 743 (816)
T 3dmk_A 704 QFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPK 743 (816)
T ss_dssp EEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESC
T ss_pred EEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCC
Confidence 99999999765532 33333334556689999999774
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=419.56 Aligned_cols=471 Identities=13% Similarity=0.148 Sum_probs=302.2
Q ss_pred EEEcCCCCceeeEEEEEecCCCCC-CCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEE
Q psy2776 24 SLSNALGQASATTKVTLLSAPGAP-DTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102 (803)
Q Consensus 24 ~a~n~~g~~~~~~~l~V~~~p~~p-~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (803)
.+.+..|.....+.|.|..+|... ..+.+....|..++|.|... + ...|... .. .+. .......|.
T Consensus 17 ~~~~~~g~~~~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~---~---~v~W~~~---~~-~~~---~~~~~~~L~ 83 (524)
T 2ec8_A 17 LLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP---G---FVKWTFE---IL-DET---NENKQNEWI 83 (524)
T ss_dssp CC--------------CCCCCEEESCCSEEECCTTSCEEEEEECT---T---EEEEEEE---SS-SCC---EEECSSEEE
T ss_pred hhhhhcCCCCCeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCC---c---eEEEcCC---Cc-ccc---ccCccceEE
Confidence 345556666667778887777532 23456667899999999963 2 1112211 11 111 223468899
Q ss_pred EeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEE-c
Q psy2776 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-D 181 (803)
Q Consensus 103 i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~-~ 181 (803)
|.+++.+|+|.|+|.+.+ |. +. ...+.+. .+|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++ +
T Consensus 84 I~~~~~~D~G~Y~C~a~n--g~---~~-~~~l~V~-----~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~ 152 (524)
T 2ec8_A 84 TEKAEATNTGKYTCTNKH--GL---SN-SIYVFVR-----DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQ 152 (524)
T ss_dssp ESSCCSTTCEEEEEEETT--SC---EE-EEEEECC-----CSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSS
T ss_pred EcccchhhCEEEEEeecC--Cc---ce-EEEEEEC-----CCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccC
Confidence 999999999999999988 42 22 2223332 23333355677888999999999999987778999998 7
Q ss_pred Ceeccce-eEEEecCeeEEEEecCCCCcce-EEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeee
Q psy2776 182 DSLIKGR-NITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRV 258 (803)
Q Consensus 182 ~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (803)
+..+... ++... ....|.|.+++.+|+| .|+|.|.|..+.... .+.|.|...+.
T Consensus 153 g~~l~~~~~~~~~-~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~---------------------- 209 (524)
T 2ec8_A 153 GKPLPKDLRFIPD-PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFK---------------------- 209 (524)
T ss_dssp SCCCCSSCEEEEE-TTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCC----------------------
T ss_pred CcCcCCCCceeEC-CCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCC----------------------
Confidence 7776543 33333 3357999999999999 999999998776543 56676653210
Q ss_pred ccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCcee-
Q psy2776 259 TQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ- 336 (803)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~- 336 (803)
..+.+.. .+....+.+|+.+.|.|.+ +.|.+.
T Consensus 210 ---------------------------------------------~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~~ 243 (524)
T 2ec8_A 210 ---------------------------------------------AVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVY 243 (524)
T ss_dssp ---------------------------------------------SCCEEEC-SCSEEEEETTSCEEEEEEEEESSTTCE
T ss_pred ---------------------------------------------CCCcEEe-cCCcceEEcCCcEEEEEEEecCCCcEE
Confidence 0011111 2333456779999999999 788776
Q ss_pred eEEeecCeec--cccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeee
Q psy2776 337 VKWLKKGKEI--KESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414 (803)
Q Consensus 337 i~W~~~g~~l--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (803)
+.|++++..+ .......+..+.
T Consensus 244 i~W~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 267 (524)
T 2ec8_A 244 STWKRENSQTKLQEKYNSWHHGDF-------------------------------------------------------- 267 (524)
T ss_dssp EEEEETTCSCCCCEEEEEEECSSS--------------------------------------------------------
T ss_pred EEEEeCCCCCccccccccccccCC--------------------------------------------------------
Confidence 9999998874 322221111000
Q ss_pred eeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccce
Q psy2776 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494 (803)
Q Consensus 415 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (803)
.......|.|.+++.+|+|.|+|.|.|..|.... .
T Consensus 268 ---~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~------------------------------------------~ 302 (524)
T 2ec8_A 268 ---NYERQATLTISSARVNDSGVFMCYANNTFGSANV------------------------------------------T 302 (524)
T ss_dssp ---CEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEE------------------------------------------E
T ss_pred ---ccceEEEEEECCCCHHHCEEEEEEEEecCCceEE------------------------------------------E
Confidence 0112346999999999999999999999888766 4
Q ss_pred eeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCc-EEEEecC----CeEEEEE
Q psy2776 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKA-CRIFIDE----ETSTIAI 568 (803)
Q Consensus 495 ~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~-~~~~~~~----~~~~L~i 568 (803)
+.|.|..+|.+... ........+.+|+.+.|.|.+.|.|.|. +.|+|+|..+..... +...... ..+.|.|
T Consensus 303 ~~l~V~~~p~~~~~---~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i 379 (524)
T 2ec8_A 303 TTLEVVDKGFINIF---PMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379 (524)
T ss_dssp EEEEEESSCEEEEE---ESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEE
T ss_pred EEEEEeccCceEee---cCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEE
Confidence 45555555543221 1112357789999999999999999999 999999999887653 2222222 2579999
Q ss_pred eeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 569 ~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 380 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P---------------------------------------------- 413 (524)
T 2ec8_A 380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP---------------------------------------------- 413 (524)
T ss_dssp CSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE----------------------------------------------
T ss_pred eecCcccCeEEEEEEEecCceEEEEEEEEEecCC----------------------------------------------
Confidence 9999999999999999999999999999997744
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeecc--------CCCC--
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL--------SSPK-- 718 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~--------~~~~-- 718 (803)
.+...+. +.+| .|.|.+.|.|.|.+.|++++..+. .+.+
T Consensus 414 -------------------------~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~ 462 (524)
T 2ec8_A 414 -------------------------EILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTL 462 (524)
T ss_dssp -------------------------EEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCC
T ss_pred -------------------------eEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceee
Confidence 3433322 3445 999999999999999999977652 1111
Q ss_pred -eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 719 -KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 719 -~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
+....++......+.++...+|+|.|+|.|.|.+|.++..+.|.|+..+.
T Consensus 463 ~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~ 513 (524)
T 2ec8_A 463 NSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK 513 (524)
T ss_dssp CC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-----
T ss_pred eeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCH
Confidence 11122333322223444245899999999999999999999999975443
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=400.55 Aligned_cols=415 Identities=15% Similarity=0.175 Sum_probs=293.3
Q ss_pred eEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCCeeE
Q psy2776 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIK 177 (803)
Q Consensus 99 ~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~ 177 (803)
..|.|.+++.+|+|.|+|.+.+..|.. +....+ .+ ..+|.+...+....+.+|+.+.|.|.+.+. |.+.+.
T Consensus 75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~--~~~~~l-~V-----~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~ 146 (585)
T 2ocw_A 75 FVVNIAQLSQDDSGRYKCGLGINSRGL--SFDVSL-EV-----SQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKS 146 (585)
T ss_pred EEEEECCCCcccCEEEEEEcccCCCCc--eEEEEE-EE-----ecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEE
Confidence 579999999999999999999877653 222222 22 235666667788889999999999999964 456799
Q ss_pred EEEcCeecc--------------ceeEEEec-----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeeccc
Q psy2776 178 WYKDDSLIK--------------GRNITYEN-----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKE 238 (803)
Q Consensus 178 W~~~~~~~~--------------~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~ 238 (803)
|+|++.... ..++.+.. +..+|.|.+++.+|+|.|+|.|.|..|....++.|.|...+
T Consensus 147 W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~--- 223 (585)
T 2ocw_A 147 LYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE--- 223 (585)
T ss_pred EEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC---
Confidence 999875421 12222221 12389999999999999999999999988888888886542
Q ss_pred ccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeee
Q psy2776 239 SARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLV 318 (803)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (803)
|....+
T Consensus 224 --------------------------------------------------------------------------p~~~~~ 229 (585)
T 2ocw_A 224 --------------------------------------------------------------------------PELVYE 229 (585)
T ss_pred --------------------------------------------------------------------------CceeEE
Confidence 122234
Q ss_pred ccccceeEEEEecCCc---eeeEEe-ecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeec
Q psy2776 319 PHLGDATFQVELSSPD---IQVKWL-KKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDF 394 (803)
Q Consensus 319 ~~g~~~~l~C~~~~p~---~~i~W~-~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 394 (803)
.+|+.+.|.|.++.|. +.+.|+ ++|..... .+...+.. ...
T Consensus 230 ~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~----~~~~~~~~--------~~~----------------------- 274 (585)
T 2ocw_A 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV----VVNTLGKR--------APA----------------------- 274 (585)
T ss_pred cCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcce----EEeCCCcC--------Ccc-----------------------
Confidence 5699999999996554 789996 88743221 00000000 000
Q ss_pred CCCceeeeeeecCcceeeeeeeEE----ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 395 GSGGWWFESKYKDDSLIKGRNITY----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
. ..++.+ .++...|.|.+++.+|+|.|+|.|.|. |......
T Consensus 275 ----------------~-~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~----------------- 319 (585)
T 2ocw_A 275 ----------------F-EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGS----------------- 319 (585)
T ss_pred ----------------c-CCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccC-----------------
Confidence 0 001111 133447999999999999999999995 3332100
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCee----EEee--
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEI----SWMK-- 544 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v----~W~~-- 544 (803)
....+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+ .|++
T Consensus 320 --------------------~~~~~~l~V~~~p~~~~~------~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~ 373 (585)
T 2ocw_A 320 --------------------PIQAWQLFVNEESTIPRS------PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQ 373 (585)
T ss_pred --------------------ceeeEEEEEecccccccC------CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccC
Confidence 001455666666654322 23567889999999999999999977 7999
Q ss_pred CCe--eecC---------CCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccc
Q psy2776 545 NGA--EITD---------SKACRIFID--EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 545 ~g~--~i~~---------~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
+|. .+.. ..++.+... .+..+|.|.++..+|+|.|+|.| |..|..+.++.|.|...
T Consensus 374 ~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~---------- 442 (585)
T 2ocw_A 374 NGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG---------- 442 (585)
T ss_pred CCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC----------
Confidence 887 4432 234444432 22346999999999999999999 99999888889888652
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
+|.+. .+....+.+|+.+.
T Consensus 443 ------------------------------------------------------------~p~~~-~~~~~~v~~G~~v~ 461 (585)
T 2ocw_A 443 ------------------------------------------------------------EPNLK-VPGNVTAVLGETLK 461 (585)
T ss_pred ------------------------------------------------------------ccccc-cCCceeEecCCcEE
Confidence 22222 24567889999999
Q ss_pred EEEEEe----ecCCCceEEeeCCeeccCCCC------eE-EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceee-eE
Q psy2776 692 LMAKVK----ASPAPSIVWFRNNKPLLSSPK------KR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATH-GA 759 (803)
Q Consensus 692 L~C~~~----g~p~~~v~W~~~~~~l~~~~~------~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~-~~ 759 (803)
|.|.+. |.|.+.+.|+++|..+..+.. +. +..++....|.|.++ +.+|+|.|+|.|.|.+|.... .+
T Consensus 462 L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~ 540 (585)
T 2ocw_A 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV-TRADEGWYWCGVKQGHFYGETAAV 540 (585)
T ss_pred EEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCC-CcccCeEEEEEeEeCCCccEEEEE
Confidence 999997 778889999999988754321 11 112345578999999 799999999999999997754 48
Q ss_pred EEEEEeec
Q psy2776 760 RVTVDVEK 767 (803)
Q Consensus 760 ~l~V~~~~ 767 (803)
.|.|..++
T Consensus 541 ~l~V~~~p 548 (585)
T 2ocw_A 541 YVAVEERK 548 (585)
T ss_pred EEEEEeee
Confidence 88887655
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=397.12 Aligned_cols=436 Identities=12% Similarity=0.120 Sum_probs=270.9
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEEE-eecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcc
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~ 129 (803)
.+...+|.+++|.|... +...+...|+. .............+.....|.|.+++.+|+|.|+|.+.+..|... .
T Consensus 57 ~~~v~~g~~~~L~c~~~---~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~--~ 131 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVD---APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT--I 131 (527)
T ss_dssp EEEECSSCCEEEEEECS---CCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEE--E
T ss_pred eEEEeccccEEEEEEEe---cCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEE--E
Confidence 35566799999999974 22223332321 111111111211112234599999999999999999998876421 1
Q ss_pred eeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcc
Q psy2776 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 130 ~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 209 (803)
.+.+..+ ++.+...........|+.+.|.|.+.|+|.|.|.|++++..+.... .............+..+|+
T Consensus 132 ---~~~v~v~----~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~ 203 (527)
T 3qs9_E 132 ---LFTVSIR----NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFG 203 (527)
T ss_dssp ---EEEEEEC---------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCS
T ss_pred ---EEEEEEC----CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcccc-ccCCcEEEEeeeeccccCC
Confidence 1222111 1111111222334567888999999999999999999887654221 1111112223334568999
Q ss_pred eEEEEEEEcCCcCeeeE-EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccc
Q psy2776 210 GRYTCKATNEAGTAETS-CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSD 288 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (803)
|.|+|.|.|..|..... +.|.|...+..
T Consensus 204 G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--------------------------------------------------- 232 (527)
T 3qs9_E 204 TDIRCCARNELGRECTRLFTIDLNQTPQT--------------------------------------------------- 232 (527)
T ss_dssp SCEEEEEECSSCEEEEECEEEESSSCCCC---------------------------------------------------
T ss_pred EEEEEEEEeCCCcccceEEEEEEeccCcc---------------------------------------------------
Confidence 99999999999976654 56666544210
Q ss_pred cccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEe
Q psy2776 289 LESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366 (803)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~ 366 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.....+......
T Consensus 233 -----------------------~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~-------- 281 (527)
T 3qs9_E 233 -----------------------TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS-------- 281 (527)
T ss_dssp -----------------------SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEE--------
T ss_pred -----------------------CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeec--------
Confidence 1234556679999999999 6999999999999888765332211100
Q ss_pred ecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 367 RVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 367 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
.+ ........|.|.+++.+|+|.|+|.|.|.
T Consensus 282 ----------------------------------------~~--------~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~- 312 (527)
T 3qs9_E 282 ----------------------------------------TN--------RTMIRILFAFVSSVARNDTGYYTCSSSKH- 312 (527)
T ss_dssp ----------------------------------------TT--------TEEEEEEEEEESSCCGGGCEEEEEEETTE-
T ss_pred ----------------------------------------cC--------cceeeEEEEEEccCCcccCeEEEEEEEeC-
Confidence 00 00012345999999999999999999997
Q ss_pred eeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeeccee
Q psy2776 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQW 526 (803)
Q Consensus 447 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v 526 (803)
... .+.|.|..+|.+... .......+.+|+.+
T Consensus 313 --~~~------------------------------------------~~~L~V~~~p~i~~~----~~~~~~~v~~G~~v 344 (527)
T 3qs9_E 313 --PSQ------------------------------------------SALVTIVEKGFINAT----NSSEDYEIDQYEEF 344 (527)
T ss_dssp --EEE------------------------------------------EEEEEEC--CEEECC----CSCCEECCCTTCCC
T ss_pred --CCc------------------------------------------eEEEEEEccCccccc----cCcccEEEcCCCeE
Confidence 222 344455544432111 01123557789999
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEee
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQ 606 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~ 606 (803)
.|.|.+.|.|.|.++|+|+|..+....+.. .++..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 345 ~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~------ 414 (527)
T 3qs9_E 345 CFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR------ 414 (527)
T ss_dssp CEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C------
T ss_pred EEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec------
Confidence 999999999999999999999997654421 2456899999999999999999999999999998888866
Q ss_pred ecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEec
Q psy2776 607 EKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686 (803)
Q Consensus 607 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 686 (803)
+|.|...+.
T Consensus 415 -----------------------------------------------------------------~P~i~~~~~------ 423 (527)
T 3qs9_E 415 -----------------------------------------------------------------KPQVLAEAS------ 423 (527)
T ss_dssp -----------------------------------------------------------------CCEEEECCC------
T ss_pred -----------------------------------------------------------------CCeEEEeCC------
Confidence 555554431
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCC-------------eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-------------KREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-------------~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
| ..|.|.+.|.|.|.|.|++++........ ..........+|.|.. .+|+|.|+|.|.|.+|
T Consensus 424 ~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~---~~d~G~Y~C~A~N~~G 498 (527)
T 3qs9_E 424 A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE---AIKGFLVKCCAYNSLG 498 (527)
T ss_dssp C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCC---SSCSCEEEEEEECSSC
T ss_pred C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEE---cCCCEEEEEEEEeCCC
Confidence 2 35899999999999999998655421110 0000111233444544 4699999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
.+++.+.|.|.
T Consensus 499 ~~~~~~~L~V~ 509 (527)
T 3qs9_E 499 TSCETILLNSP 509 (527)
T ss_dssp EEEEEEEC---
T ss_pred CceeEEEEecC
Confidence 99999998774
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=379.65 Aligned_cols=393 Identities=14% Similarity=0.151 Sum_probs=241.9
Q ss_pred cCCeEEEEEEEEccCccCCCc-ceeeE---------EEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeE
Q psy2776 108 TKHEYMFRVAAVNAIGTGPAS-HNTRY---------VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177 (803)
Q Consensus 108 ~~d~g~y~c~a~~~~g~~~~s-~~~~~---------~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~ 177 (803)
..+.|.|+|...+..+..... ..+.+ +....+ +..+.+...+..+.+.+|+.+.|.|.+.+.|.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~--p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~ 81 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALR--PQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81 (423)
T ss_dssp ------------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEE
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccC--CCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEE
Confidence 467899999998775432111 11111 111110 111233444557899999999999999999999999
Q ss_pred EEEcCeecccee-EEEe-cCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEE
Q psy2776 178 WYKDDSLIKGRN-ITYE-NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVI 255 (803)
Q Consensus 178 W~~~~~~~~~~~-~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 255 (803)
|++++..+.... +..+ .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|.....
T Consensus 82 W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~--------------- 146 (423)
T 3qs7_E 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLR--------------- 146 (423)
T ss_dssp EEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEE---------------
T ss_pred EEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcccccc---------------
Confidence 999997765321 1111 12357999999999999999999999998887888888754211000
Q ss_pred eeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc
Q psy2776 256 KRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~ 334 (803)
.| ..+..|+.+.|.|.+ |.|.
T Consensus 147 --------------------------------------------------------~p--~~~~~~~~~~L~C~a~G~P~ 168 (423)
T 3qs7_E 147 --------------------------------------------------------RP--YFRKMENQDALVCISESVPE 168 (423)
T ss_dssp --------------------------------------------------------EE--EEEECSSSSCEEEEEEESSC
T ss_pred --------------------------------------------------------CC--cEeccCCceEEEEEEeeecC
Confidence 00 112347788999999 9999
Q ss_pred eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeee
Q psy2776 335 IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414 (803)
Q Consensus 335 ~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (803)
|.+.|+|++..+...... . ..+
T Consensus 169 P~i~W~k~~~~~~~~~~~-~-~~~-------------------------------------------------------- 190 (423)
T 3qs7_E 169 PIVEWVLCDSQGESCKEE-S-PAV-------------------------------------------------------- 190 (423)
T ss_dssp CEEEEEEC---------------C--------------------------------------------------------
T ss_pred CeEEEEECCCCCcccccc-c-ccc--------------------------------------------------------
Confidence 999999987654321000 0 000
Q ss_pred eeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccce
Q psy2776 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494 (803)
Q Consensus 415 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (803)
+ ......| ...|+|.|+|.|.|..|..... .
T Consensus 191 -~--~~~~~~l-----~~~d~G~Y~C~A~N~~G~~~~~-----------------------------------------~ 221 (423)
T 3qs7_E 191 -V--KKEEKVL-----HELFGTDIRCCARNELGRECTR-----------------------------------------L 221 (423)
T ss_dssp -E--EECCSEE-----CCCCSSCEEEEEECSSCEEEEE-----------------------------------------C
T ss_pred -c--cccceEE-----ecccCeEEEEEEEcCCCCccee-----------------------------------------e
Confidence 0 0000011 5689999999999998876552 4
Q ss_pred eeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEE--e----cCCeEEEE
Q psy2776 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIF--I----DEETSTIA 567 (803)
Q Consensus 495 ~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~--~----~~~~~~L~ 567 (803)
+.|.|..+|..+.. ...+.+|+.+.|.|.+.| .|.|.+.|+|+|..+.....+... . ......|.
T Consensus 222 ~~l~V~~~p~~~~~--------~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~ 293 (423)
T 3qs7_E 222 FTIDLNQTPQTTLP--------QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293 (423)
T ss_dssp EEEESSSCCCSSTT--------EEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEE
T ss_pred EEEEEecCCccCCC--------ceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEE
Confidence 55666666654322 467889999999999998 677999999999987654322111 1 11235799
Q ss_pred EeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 568 i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
|.++..+|+|.|+|.|.|. .+.++.|.|..+|
T Consensus 294 I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p--------------------------------------------- 325 (423)
T 3qs7_E 294 VSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG--------------------------------------------- 325 (423)
T ss_dssp ESSCCTTTCEEEEEEETTE---EEEEEEEEEESSC---------------------------------------------
T ss_pred EeecCHHHCEEEEEEEecC---CCceEEEEEEeCC---------------------------------------------
Confidence 9999999999999999998 7788888886633
Q ss_pred CCCCCccceeeeeeecccCCCCCCCCeeEecc--ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC
Q psy2776 648 GLGPEATTELVALATHATLGSPGQAPLFIERF--EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 725 (803)
Q Consensus 648 g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~ 725 (803)
.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+|+|.+|..+.+. ...
T Consensus 326 --------------------------~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~~~ 376 (423)
T 3qs7_E 326 --------------------------FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG---LDN 376 (423)
T ss_dssp --------------------------EEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB---CSS
T ss_pred --------------------------cceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc---ccC
Confidence 222222 3466888999999999999999999999999998655310 001
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccC
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 769 (803)
. ..+.+... ..+|+|.|+|.|+|.+|..+.++.|.|...+.+
T Consensus 377 ~-~~~~~~~~-~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~ 418 (423)
T 3qs7_E 377 G-YSISKFCN-HKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418 (423)
T ss_dssp S-SEEEEECC-CTTCCSCEEEEEEETTEEEEEEEEEC-------
T ss_pred C-cEEEEEec-ccccCEEEEEEEEcCCceEEEEEEEEEecCCcc
Confidence 1 12223455 579999999999999999999999999765544
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=379.06 Aligned_cols=368 Identities=20% Similarity=0.326 Sum_probs=265.8
Q ss_pred CCCeeeccCcCeee---ecCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecC-CCCcceEEEEE
Q psy2776 143 EAPVIQEPLKDSVA---GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNC-SESSEGRYTCK 215 (803)
Q Consensus 143 ~~p~i~~~~~~~~v---~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v-~~~d~G~Y~C~ 215 (803)
.+|.|...|....+ .+|+.+.|.|.+.|.|.|+|.|+|++..+... ++...+ ..|.|.++ ..+|+|.|+|.
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--g~l~i~~~~~~~D~G~Y~C~ 81 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQCI 81 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEET--TEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEEC--CEEEEcCCCCcccCEEEEEE
Confidence 34666666666655 57999999999999999999999999988632 333333 35777776 78999999999
Q ss_pred EEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 216 ATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 216 a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
|.|..|... ..+.|.+...+.
T Consensus 82 A~N~~G~~~s~~~~l~v~~~~~---------------------------------------------------------- 103 (384)
T 3kld_A 82 ATNSFGTIVSREAKLQFAYLEN---------------------------------------------------------- 103 (384)
T ss_dssp EEETTEEEECCCEEEEEEEECC----------------------------------------------------------
T ss_pred EEcCcccEEecceEEEEecccc----------------------------------------------------------
Confidence 999998653 345555543310
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
+.........+.+|+.+.|.|.+ +.|.+.+.|++++.++....+..+..
T Consensus 104 -------------~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---------------- 154 (384)
T 3kld_A 104 -------------FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ---------------- 154 (384)
T ss_dssp -------------CSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECT----------------
T ss_pred -------------cccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEc----------------
Confidence 11111223445679999999986 56789999999988775433221111
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
....|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 155 ------------------------------------------------~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~ 186 (384)
T 3kld_A 155 ------------------------------------------------ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVL 186 (384)
T ss_dssp ------------------------------------------------TTCCEEESSCCGGGCEEEEEEEEETTTTEEEE
T ss_pred ------------------------------------------------CCCcEEEeecCHHHCceEEEEEecccccceee
Confidence 11237788888888999999998877654331
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
. .+..+.+... .+....+|. +.........+.+|+.+.|.|.+
T Consensus 187 ~----~~~~~~v~~~----------------------------~~~~~~~p~-----~~~~~~~~~~~~~G~~v~l~C~~ 229 (384)
T 3kld_A 187 G----PPTPLILRND----------------------------GVMGEYEPK-----IEVQFPETVPAEKGTTVKLECFA 229 (384)
T ss_dssp C----CCEEEEEEEE----------------------------EECCCEEEE-----EEEECCSEEEEETTSCEEEEEEE
T ss_pred C----CceEEEEccC----------------------------CcccccCCc-----eeecCCCceEecCCCcEEEEEEE
Confidence 1 0000111000 000011111 11111234667889999999999
Q ss_pred cCcCCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccc
Q psy2776 533 FGFPRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 533 ~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
.|.|.|.+.|+|+ +..+.... . .......|.|.++..+|+|.|+|.|.|..|....+..|.|..
T Consensus 230 ~g~P~p~i~W~k~~~~~~~~~~--~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~----------- 294 (384)
T 3kld_A 230 LGNPVPTILWRRADGKPIARKA--R--RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----------- 294 (384)
T ss_dssp EEESCCEEEEEETTCCCCCTTC--E--ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-----------
T ss_pred eecCCCcEEEEeCCCccccccc--e--ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec-----------
Confidence 9999999999995 44554322 1 123456899999999999999999999999999899998876
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
+|.|...+....+.+|+.+.
T Consensus 295 ------------------------------------------------------------~P~~~~~~~~~~v~~g~~v~ 314 (384)
T 3kld_A 295 ------------------------------------------------------------QPNWVQIINDIHVAMEESVF 314 (384)
T ss_dssp ------------------------------------------------------------EEEEEECCCCEEECTTCCEE
T ss_pred ------------------------------------------------------------CCccccCCCceEecCCCCEE
Confidence 45566666778899999999
Q ss_pred EEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 692 L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|.+.|.|.|.+.|+|||.++..+.++.+. +. +|.|.++ ..+|+|.|+|.|.|.+|....++.|.|.
T Consensus 315 l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--~~--~L~i~~v-~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 315 WECKANGRPKPTYRWLKNGDPLLTRDRIQIE--QG--TLNITIV-NLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp EECEEEEESCCEEEEEETTEECCCBTTEEEE--TT--EEEESSC-CGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEeECCccCCCeEEEEECCEECCCCccEEEe--CC--EEEEeec-ChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 9999999999999999999999887776542 33 6999999 7899999999999999999999999984
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=377.35 Aligned_cols=368 Identities=21% Similarity=0.293 Sum_probs=279.3
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecC-----CCCcceEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNC-----SESSEGRY 212 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v-----~~~d~G~Y 212 (803)
.....+...|.+..+.+|+.+.|.|.+.+ .|.+.+.|+|++..+.. .+.... ....|.|.++ +.+|+|.|
T Consensus 19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~~~D~G~Y 97 (403)
T 3laf_A 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL-PNGSLLIQNILHSRHHKPDEGLY 97 (403)
T ss_dssp CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEEC-TTSCEEECSCCCBTTBCSSCEEE
T ss_pred ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEe-cCCcEEEeeeeccCCCCCcceEE
Confidence 34566777889999999999999999986 68889999999998753 222222 2345778777 77899999
Q ss_pred EEEEEcCCcCeee--EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 213 TCKATNEAGTAET--SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 213 ~C~a~n~~g~~~~--s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
+|.+.|..+.... .+.|.|..++
T Consensus 98 ~C~~~~~~~~~~~s~~~~l~v~~p~------------------------------------------------------- 122 (403)
T 3laf_A 98 QCEASLGDSGSIISRTAKVMVAGPL------------------------------------------------------- 122 (403)
T ss_dssp EEEEECGGGCEEECCCEEEEECCCC-------------------------------------------------------
T ss_pred EEEEEeCCCccEEEEEEEEEecCCC-------------------------------------------------------
Confidence 9999976544332 3445444321
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc---eeEEEEcCceeEEEEe
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA---RHIITSRGTQRKLVIK 366 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~---~~~~~~~~~~~~l~i~ 366 (803)
.+. ..+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.... +...
T Consensus 123 ----------------~~~-~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------------ 173 (403)
T 3laf_A 123 ----------------RFL-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV------------ 173 (403)
T ss_dssp ----------------EEC-SCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEE------------
T ss_pred ----------------ccc-cCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEE------------
Confidence 111 12233455679999999999 89999999999988775311 1111
Q ss_pred ecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 367 RVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 367 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
.....|.|.+++.+|+|.|+|.|.|..
T Consensus 174 -----------------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 200 (403)
T 3laf_A 174 -----------------------------------------------------LPSGALQISRLQPGDSGVYRCSARNPA 200 (403)
T ss_dssp -----------------------------------------------------CTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred -----------------------------------------------------cCCceEEEcccccccCEEEEEEEEcCC
Confidence 111248899999999999999999987
Q ss_pred eeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeeccee
Q psy2776 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQW 526 (803)
Q Consensus 447 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v 526 (803)
+..... .+.+.+..+|..+.............+.+|+.+
T Consensus 201 ~~~~~~-----------------------------------------~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~ 239 (403)
T 3laf_A 201 STRTGN-----------------------------------------EAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239 (403)
T ss_dssp CCCBCC-----------------------------------------CEEEEEECCCCCCEEEEEEECCCCEEEETTSCE
T ss_pred Cceecc-----------------------------------------ceeEEEecCCCcccCceEecCCCceEecCCCcE
Confidence 654431 344455555544333223333345778899999
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEee
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQ 606 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~ 606 (803)
.|.|.+.|.|.+.+.|++++..+.......... .+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 240 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------ 311 (403)
T 3laf_A 240 VLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL--GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------ 311 (403)
T ss_dssp EECCEEEEESCCEEEEEETTEECCCSSSSEEEE--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------
T ss_pred EEEEEcCCCCCCeEEEEECCeeccCCCceEEEC--CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC------
Confidence 999999999999999999999887653322222 245799999999999999999999999999999998876
Q ss_pred ecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEec
Q psy2776 607 EKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686 (803)
Q Consensus 607 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 686 (803)
+|.+...+....+.+
T Consensus 312 -----------------------------------------------------------------~p~~~~~~~~~~~~~ 326 (403)
T 3laf_A 312 -----------------------------------------------------------------PPWFLNHPSNLYAYE 326 (403)
T ss_dssp -----------------------------------------------------------------EEEEEECCCCEECCT
T ss_pred -----------------------------------------------------------------CCcEeecCcceEEec
Confidence 455666666778889
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+... ..|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|+.
T Consensus 327 g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~---~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 327 SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGG---SNLRILGV-VKSDEGFYQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp TCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETT---TEEEESSC-CGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred CCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecC---ccEEEecc-ccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence 99999999999999999999999999988777665432 36999999 78999999999999999999999999853
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=375.93 Aligned_cols=417 Identities=17% Similarity=0.194 Sum_probs=272.5
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCe-EEEEEEeecCCCceeEEEeee-----eeeEEEEeccccCCeEEEEEEEEccCcc
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPV-TGYVLESHDKDEFMVWNKIET-----TSTTYEVTKLTTKHEYMFRVAAVNAIGT 124 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~c~a~~~~g~ 124 (803)
......|..++|.|.... ..+. .++. ..|.+.+. ....|.|.+++. |+| |+|.+.+..+.
T Consensus 8 ~~~v~~G~~v~L~C~~~g---p~p~~~~~~---------~~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~ 73 (450)
T 1z7z_I 8 KVILPRGGSVLVTCSTSC---DQPMLLGIE---------TPLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQ 73 (450)
T ss_dssp EEEEETTEEEEEEEECCS---SCCCEEEEC---------SSSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred ceEEecCCcEEEEEEccC---CCccccccc---------ceeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCc
Confidence 345567999999999743 2221 1110 13333332 235799999987 999 99999755432
Q ss_pred CCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC---eeEEEEcCeeccceeEEEecCeeEEEE
Q psy2776 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP---DIKWYKDDSLIKGRNITYENNVARFTV 201 (803)
Q Consensus 125 ~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~L~i 201 (803)
.+....+.+.. .|..+...+.+..+.+|+.+.|.|.+.+.|++ .|.|+|++..+.............|.|
T Consensus 74 --~~~~~~l~V~~-----~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i 146 (450)
T 1z7z_I 74 --STAKTFLTVYW-----TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146 (450)
T ss_dssp --EEEECEEEEEB-----CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEE
T ss_pred --ceeEEEEEEEe-----CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEE
Confidence 22222222221 23334355667888999999999999998888 899999998876543222334568999
Q ss_pred ecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
.++..+|+|.|+|.|.|..|.......+.+.... .+.+.
T Consensus 147 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~----------------~l~v~------------------------- 185 (450)
T 1z7z_I 147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPY----------------QLQTF------------------------- 185 (450)
T ss_dssp ECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCE----------------ECEEC-------------------------
T ss_pred EeeccccCceEEEEEEcccCCCCceEEeeccCcc----------------ceeee-------------------------
Confidence 9999999999999999988754322222111110 00000
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCce---eeeccccceeEEEEe-cC-C--ceeeEEeecCeeccccceeEE
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV---TLVPHLGDATFQVEL-SS-P--DIQVKWLKKGKEIKESARHII 354 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~l~C~~-~~-p--~~~i~W~~~g~~l~~~~~~~~ 354 (803)
..+ ...|.. ..+.+|+.+.|.|.+ +. | .+.+.|+++|..+.. ....
T Consensus 186 --------------------~~~-----~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~ 238 (450)
T 1z7z_I 186 --------------------VLP-----ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTY 238 (450)
T ss_dssp --------------------CCC-----SSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEE
T ss_pred --------------------ccC-----CCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEe
Confidence 000 000111 456679999999999 66 7 799999999988865 2111
Q ss_pred EEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCC
Q psy2776 355 TSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS 434 (803)
Q Consensus 355 ~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 434 (803)
..++. ...+.+ +++.+|
T Consensus 239 ~~~~~--------------------------------------------------------------~~~~~~-~v~~~d 255 (450)
T 1z7z_I 239 GNDSF--------------------------------------------------------------SAKASV-SVTAED 255 (450)
T ss_dssp ETTEE--------------------------------------------------------------EEEEEE-ECCGGG
T ss_pred cCCce--------------------------------------------------------------eEEEEE-EeEhhh
Confidence 11000 001122 678899
Q ss_pred ce--eEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeee
Q psy2776 435 EG--RYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVD 512 (803)
Q Consensus 435 ~G--~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~ 512 (803)
+| .|+|.|.|..|.... ...|.|...|. |.+..
T Consensus 256 ~G~~~Y~C~a~n~~g~~~~------------------------------------------~~~l~V~~~~~-p~i~~-- 290 (450)
T 1z7z_I 256 EGTQRLTCAVILGNQSQET------------------------------------------LQTVTIYSFPA-PNVIL-- 290 (450)
T ss_dssp CEEEEEEEEEEETTEEEEE------------------------------------------EEEEEEECCCC-CEEEE--
T ss_pred CCcEEEEEEEccCCccEEE------------------------------------------EEEEEEecCCC-CeEec--
Confidence 99 999999999887766 33444544332 22211
Q ss_pred ccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-C--
Q psy2776 513 SNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-S-- 589 (803)
Q Consensus 513 ~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-~-- 589 (803)
....+.+|+.+.|.|.+. |.|.++| +|..+... +....|.|.++..+|+|.|+|.|.|..+ .
T Consensus 291 ---~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~ 355 (450)
T 1z7z_I 291 ---TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 355 (450)
T ss_dssp ---SCSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEE
T ss_pred ---CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC--------CceEEEEEecCcccCCceEEEEEEcCCCCccc
Confidence 245789999999999997 8899999 77766221 1235899999999999999999997655 3
Q ss_pred -eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 590 -TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 590 -~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
...++.|.|..+|
T Consensus 356 ~~~~~~~l~V~~~P------------------------------------------------------------------ 369 (450)
T 1z7z_I 356 HKNQTRELRVLYGP------------------------------------------------------------------ 369 (450)
T ss_dssp EEEEEEECEEEEEE------------------------------------------------------------------
T ss_pred ccceeEEEEEecCC------------------------------------------------------------------
Confidence 3467778776644
Q ss_pred CCCCCeeEec--cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 669 PGQAPLFIER--FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 669 ~~~~p~~~~~--~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+... +....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ +.. + ++ +.+|+|.|+|
T Consensus 370 -----~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~--------g~~--~---~v-~~~d~G~Y~C 430 (450)
T 1z7z_I 370 -----RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------GES--V---TV-TRDLEGTYLC 430 (450)
T ss_dssp -----ECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------TSC--E---EC-CGGGCEEEEE
T ss_pred -----ceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC--------CCe--E---eE-ehhhCeEEEE
Confidence 23222 24568899999999999999999999999998854433 221 2 45 6799999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+|.++.++.|.|.
T Consensus 431 ~a~N~~G~~~~~~~l~V~ 448 (450)
T 1z7z_I 431 RARSTQGEVTREVTVNVL 448 (450)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCceeEEEEEEEE
Confidence 999999999999999985
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=372.92 Aligned_cols=375 Identities=21% Similarity=0.368 Sum_probs=273.0
Q ss_pred CCCCeeec-cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEe----cCCCCcceEEE
Q psy2776 142 AEAPVIQE-PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVV----NCSESSEGRYT 213 (803)
Q Consensus 142 ~~~p~i~~-~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~----~v~~~d~G~Y~ 213 (803)
..+|.|.. .+.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++.......+|.|. +++.+|+|.|+
T Consensus 14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~ 93 (404)
T 3p3y_A 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93 (404)
T ss_dssp CCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEE
T ss_pred cCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEE
Confidence 45677765 46778899999999999999999999999999987752 233333344566665 88999999999
Q ss_pred EEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 214 CKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 214 C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|.|.|..|... ..+.|.|...+...
T Consensus 94 C~a~n~~g~~~s~~~~l~V~~~p~~~------------------------------------------------------ 119 (404)
T 3p3y_A 94 CFARNKFGTALSNRIRLQVSKSPLWP------------------------------------------------------ 119 (404)
T ss_dssp EEEECSSCEEEEEEEEEEECCCCCCC------------------------------------------------------
T ss_pred EEEEcCCCeEeeeeEEEEEeccCccc------------------------------------------------------
Confidence 99999988764 45677776553111
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCee-ccccceeEEEEcCceeEEEEeecC
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKE-IKESARHIITSRGTQRKLVIKRVT 369 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~-l~~~~~~~~~~~~~~~~l~i~~~~ 369 (803)
...+....+.+|+.+.|.|.+ +.|.+.+.|++++.. +....+..+..++
T Consensus 120 -----------------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----------- 171 (404)
T 3p3y_A 120 -----------------KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG----------- 171 (404)
T ss_dssp -----------------CCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTS-----------
T ss_pred -----------------cCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCC-----------
Confidence 111122455679999999997 688999999998643 3333222221111
Q ss_pred CCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCC-ceeEEEEeeCCcee
Q psy2776 370 QDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS-EGRYTCKATNEAGT 448 (803)
Q Consensus 370 ~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~~~~g~ 448 (803)
.|.|.+++.+| .|.|+|.|.|..+.
T Consensus 172 ------------------------------------------------------~l~i~~v~~~d~~G~Y~C~a~n~~~~ 197 (404)
T 3p3y_A 172 ------------------------------------------------------DLYFSNVMLQDMQTDYSCNARFHFTH 197 (404)
T ss_dssp ------------------------------------------------------CEEESSCCSGGGSSCBEEEEECTTTC
T ss_pred ------------------------------------------------------cEEEEeeeeccCCcceEEEEEecccc
Confidence 37788888888 59999999988775
Q ss_pred eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEE
Q psy2776 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528 (803)
Q Consensus 449 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l 528 (803)
...... .+.+.+..... .+..+|.+... ........+.+|+.+.|
T Consensus 198 ~~~~~~----~~~l~v~~~~~----------------------------~~~~~p~~~~~---~~~~~~~~~~~G~~v~l 242 (404)
T 3p3y_A 198 TIQQKN----PFTLKVLTTRG----------------------------VAERTPSFMYP---QGTASSQMVLRGMDLLL 242 (404)
T ss_dssp CEEECC----CBCEEEECCSC----------------------------CCCCCCCBSSS---CSSEEEEEEETTSCEEE
T ss_pred ceeccC----ceeEEEeccCC----------------------------ccccCCccccc---cCCCCCceEecCCCEEE
Confidence 443211 01111111000 01112221111 00112466889999999
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeec
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEK 608 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~ 608 (803)
.|.+.|.|.+.+.|+++|..+..... .. ...+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 243 ~C~~~g~p~~~v~W~~~~~~~~~~~~-~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------- 311 (404)
T 3p3y_A 243 ECIASGVPTPDIAWYKKGGDLPSDKA-KF--ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-------- 311 (404)
T ss_dssp ECCBCCSSCCEEEEEETTBCCCTTTE-EE--EGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE--------
T ss_pred EEEECCCCCCcEEEEECCEECCCCcc-cc--cccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC--------
Confidence 99999999999999999998876543 22 22356899999999999999999999999999999998876
Q ss_pred ccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC
Q psy2776 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688 (803)
Q Consensus 609 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~ 688 (803)
+|.+...+....+.+|+
T Consensus 312 ---------------------------------------------------------------~p~~~~~~~~~~v~~g~ 328 (404)
T 3p3y_A 312 ---------------------------------------------------------------APYWLDEPKNLILAPGE 328 (404)
T ss_dssp ---------------------------------------------------------------EEEEEECCCCEEECTTC
T ss_pred ---------------------------------------------------------------CCeeeccCCcceeecCC
Confidence 45566666778899999
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.+.|.|.+.|.|.|.+.|+++|..+..+.. ......+. .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 329 ~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 402 (404)
T 3p3y_A 329 DGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDT-QISSRAVYQCNTSNEHGYLLANAFVSVL 402 (404)
T ss_dssp CEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETT--EEEESSC-CSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred cEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCC--EEEEeec-CHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 999999999999999999999999876542 12222333 7999999 7999999999999999999999998873
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=368.54 Aligned_cols=371 Identities=20% Similarity=0.278 Sum_probs=272.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccce--eEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGR--NITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+ .|.+.+.|+|++..+... .........+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 83 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET 83 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEe
Confidence 46889998889999999999999999998 899999999999887643 334444567899999999999999999999
Q ss_pred CCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 219 EAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 219 ~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
..|... ..+.|.|...+.+..
T Consensus 84 ~~g~~~s~~~~l~v~~~~~p~~---------------------------------------------------------- 105 (395)
T 1bih_A 84 PAGVASSRVISFRKTYLIASPA---------------------------------------------------------- 105 (395)
T ss_dssp TTEEEECCCEEEEEEEEECCCC----------------------------------------------------------
T ss_pred CCCeEEeEEEEEEEEEeecCCc----------------------------------------------------------
Confidence 888654 235565554321000
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCe---eccc----cceeEEEEcCceeEEEEeec
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGK---EIKE----SARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~---~l~~----~~~~~~~~~~~~~~l~i~~~ 368 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|++++. +... ..++.+.
T Consensus 106 --------------~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~------------- 158 (395)
T 1bih_A 106 --------------KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG------------- 158 (395)
T ss_dssp --------------EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-------------
T ss_pred --------------CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc-------------
Confidence 0112334579999999996 78999999999862 2111 1111111
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce---eEEEEeeCC
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG---RYTCKATNE 445 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~a~~~ 445 (803)
. ...|.|.+++.+|+| .|+|.|.|.
T Consensus 159 ---------------------------------------------------~-~~~L~i~~v~~~d~G~~~~Y~C~a~n~ 186 (395)
T 1bih_A 159 ---------------------------------------------------P-DGNLYFTIVTKEDVSDIYKYVCTAKNA 186 (395)
T ss_dssp ---------------------------------------------------T-TSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred ---------------------------------------------------C-CCcEEEEEEeeccCCCceEEEEEEEec
Confidence 1 114889999999999 999999998
Q ss_pred ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecce
Q psy2776 446 AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQ 525 (803)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~ 525 (803)
.|....... ...+...... ........+|. + ......+.+|+.
T Consensus 187 ~~~~~~~~~--------~~~~~~~~~~---------------------~~~~~~~~~p~-----~---~~~~~~~~~G~~ 229 (395)
T 1bih_A 187 AVDEEVVLV--------EYEIKGVTKD---------------------NSGYKGEPVPQ-----Y---VSKDMMAKAGDV 229 (395)
T ss_dssp TCSSCEEEE--------EEEECCCBCC---------------------SSCCCCCCEEE-----E---ECCSEEEETTSC
T ss_pred ccceEEEee--------eEEecccccc---------------------cccccCCcCce-----e---cCCceEEECCCc
Confidence 877554210 0000000000 00000011111 1 123577899999
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE--ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEE-EEEEEEeeeE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIF--IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL-DLSLQVLGYI 602 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~-s~~l~V~~~p 602 (803)
+.|.|.+.|.|.+.+.|+|+|..+......++. ....+..|.|.++..+|+|.|+|.|.|..|.... ++.|.|..
T Consensus 230 v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~-- 307 (395)
T 1bih_A 230 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-- 307 (395)
T ss_dssp EEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE--
T ss_pred EEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc--
Confidence 999999999999999999999988765333332 2233458999999999999999999999999665 88888876
Q ss_pred eEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce-
Q psy2776 603 IQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE- 681 (803)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~- 681 (803)
+|.|...+..
T Consensus 308 ---------------------------------------------------------------------~P~~~~~~~~~ 318 (395)
T 1bih_A 308 ---------------------------------------------------------------------APKYEQKPEKV 318 (395)
T ss_dssp ---------------------------------------------------------------------EEEEEECCCSE
T ss_pred ---------------------------------------------------------------------CCccccCCCcc
Confidence 4455555555
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
..+.+|+.+.|.|.+.|.|.|.+.|+++|.++..+ ++.+. +. .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|
T Consensus 319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--~~--~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~~~l 392 (395)
T 1bih_A 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGV-KNGDKGYYGCRATNEHGDKYFETLV 392 (395)
T ss_dssp EEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSC-CSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred eEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--CC--EEEEeeC-CcccCEEEEEEEEccCCCceEEEEE
Confidence 67899999999999999999999999999998655 54432 33 7999999 7999999999999999999999988
Q ss_pred EE
Q psy2776 762 TV 763 (803)
Q Consensus 762 ~V 763 (803)
.|
T Consensus 393 ~V 394 (395)
T 1bih_A 393 QV 394 (395)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=381.62 Aligned_cols=379 Identities=16% Similarity=0.196 Sum_probs=277.4
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..||.|...+.+..+.+|+.++|.|.+.+ .+.|+|++..+. .......|.|.+++.+|+|.|+|.+.| |
T Consensus 34 ~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g 102 (524)
T 2ec8_A 34 PSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET-----NENKQNEWITEKAEATNTGKYTCTNKH--G 102 (524)
T ss_dssp CCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC-----EEECSSEEEESSCCSTTCEEEEEEETT--S
T ss_pred CCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc-----ccCccceEEEcccchhhCEEEEEeecC--C
Confidence 46788887777888999999999999987 899999998662 344567899999999999999999999 5
Q ss_pred CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccC
Q psy2776 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESK 301 (803)
Q Consensus 222 ~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (803)
. ..++.|.|..++.
T Consensus 103 ~-~~~~~l~V~~p~~----------------------------------------------------------------- 116 (524)
T 2ec8_A 103 L-SNSIYVFVRDPAK----------------------------------------------------------------- 116 (524)
T ss_dssp C-EEEEEEECCCSSC-----------------------------------------------------------------
T ss_pred c-ceEEEEEECCCCc-----------------------------------------------------------------
Confidence 3 5556666653310
Q ss_pred CCccccccccCCceeeeccccceeEEEEe-cCCceeeEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
++ ..+....+.+|+.+.|.|.+ +.|.+.+.|++ +|..+..+.++.+...+
T Consensus 117 ------~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~--------------------- 168 (524)
T 2ec8_A 117 ------LF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA--------------------- 168 (524)
T ss_dssp ------SB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTT---------------------
T ss_pred ------cc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCc---------------------
Confidence 01 12233445679999999999 55569999988 78888765544333222
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
.|.|.+++.+|+| .|+|.|.|..+.....
T Consensus 169 --------------------------------------------~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~------ 198 (524)
T 2ec8_A 169 --------------------------------------------GIMIKSVKRAYHRLCLHCSVDQEGKSVLSE------ 198 (524)
T ss_dssp --------------------------------------------EEEEESCCGGGTTCEEEEEEC----CCCCC------
T ss_pred --------------------------------------------cEEEeccchhhCCceEEEEEEECCceEEEE------
Confidence 3889999999999 9999999876554331
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC----CCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ----SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.|.|. .+|.+ . ..+....+.+|+.+.|.|.+.|
T Consensus 199 -----------------------------------~~~l~V~~~~~~~p~i---~---~~~~~~~v~~G~~v~L~C~~~g 237 (524)
T 2ec8_A 199 -----------------------------------KFILKVRPAFKAVPVV---S---VSKASYLLREGEEFTVTCTIKD 237 (524)
T ss_dssp -----------------------------------CEECCEECCCCSCCEE---E---CSCSEEEEETTSCEEEEEEEEE
T ss_pred -----------------------------------EEEEEEEeCCCCCCcE---E---ecCCcceEEcCCcEEEEEEEec
Confidence 3344443 23321 1 1223457899999999999999
Q ss_pred cCCCe-eEEeeCCeee--cCCCcEEEE---ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeec
Q psy2776 535 FPRPE-ISWMKNGAEI--TDSKACRIF---IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEK 608 (803)
Q Consensus 535 ~p~~~-v~W~~~g~~i--~~~~~~~~~---~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~ 608 (803)
.|.+. +.|++++..+ ....+..+. .....+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus 238 ~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~------- 310 (524)
T 2ec8_A 238 VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK------- 310 (524)
T ss_dssp SSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESS-------
T ss_pred CCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEecc-------
Confidence 99886 9999999873 322222221 1123579999999999999999999999999999999998763
Q ss_pred ccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecc---ceeEEe
Q psy2776 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF---EEKTVK 685 (803)
Q Consensus 609 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~ 685 (803)
|.+...+ ....+.
T Consensus 311 ----------------------------------------------------------------p~~~~~~~~~~~~~v~ 326 (524)
T 2ec8_A 311 ----------------------------------------------------------------GFINIFPMINTTVFVN 326 (524)
T ss_dssp ----------------------------------------------------------------CEEEEEESSCSEEEEC
T ss_pred ----------------------------------------------------------------CceEeecCCCceEEEc
Confidence 3333322 357889
Q ss_pred cCCeEEEEEEEeecCCCc-eEEeeCCeeccCCC-CeEEEeeC----ceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 686 EKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSP-KKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~-~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
+|+.+.|.|.+.|.|.|. +.|+++|.++.... ++....++ ...+|.|.++ +.+|+|.|+|.|.|..|..+.++
T Consensus 327 ~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~~~~~~ 405 (524)
T 2ec8_A 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL-KGTEGGTYTFLVSNSDVNAAIAF 405 (524)
T ss_dssp TTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSC-CGGGCEEEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeec-CcccCeEEEEEEEecCceEEEEE
Confidence 999999999999999999 99999999987765 33333333 3578999999 79999999999999999999999
Q ss_pred EEEEEeeccCCCCCcccCCccceeeeeeeeEE
Q psy2776 760 RVTVDVEKVGRPSINSIDIDLNHVHYLAQSTE 791 (803)
Q Consensus 760 ~l~V~~~~~~pp~~~~~~~~~~~~~~~~~~~~ 791 (803)
.|.|..+|........... +|+|.+.|.|
T Consensus 406 ~l~V~~~P~i~~~~~~~~g---~l~C~~~g~P 434 (524)
T 2ec8_A 406 NVYVNTKPEILTYDRLVNG---MLQCVAAGFP 434 (524)
T ss_dssp EEEECEEEEEEEEECCSSS---CEEEEEEEES
T ss_pred EEEEecCCeEeecccCcCc---EEEEEEEeec
Confidence 9998754332110001111 6777777766
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=419.30 Aligned_cols=512 Identities=16% Similarity=0.196 Sum_probs=115.0
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCC--ceeEEE--eeeeeeEEEEeccccCCeEEEEEEEEccCccCC
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE--FMVWNK--IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~ 126 (803)
......|..++|.|... ..+ .|......... ...... .+.....|.|.+++..|+|.|+|.+....
T Consensus 40 ~~~v~~G~~vtL~C~~~-----~~v-~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~C~~~~~~---- 109 (772)
T 3v2a_R 40 ILTIKANTTLQITCRGQ-----RDL-DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD---- 109 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcCCCCEEEEEecc-----CCe-eeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcHhhCEeEEEEEcCCC----
Confidence 44556799999999843 122 22222111000 000000 11224689999999999999999987211
Q ss_pred CcceeeEEEEcCCCCCCCCeeeccCcCeeeecC--CcEEEEEEECccCCCeeEEEEc--Ceecc-ce-eEEEecCeeEEE
Q psy2776 127 ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ--SSVTLECVVSGVPTPDIKWYKD--DSLIK-GR-NITYENNVARFT 200 (803)
Q Consensus 127 ~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G--~~~~L~C~~~g~p~p~i~W~~~--~~~~~-~~-~~~~~~~~~~L~ 200 (803)
.+.. ..+.+..+.....+.+...+....+.+| +.++|.|.+.+ |.+.+.|+++ +..+. .. ...+ .....|.
T Consensus 110 ~~~~-~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~-~~~~~l~ 186 (772)
T 3v2a_R 110 LASV-IYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW-DSKKGFT 186 (772)
T ss_dssp -----------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEE-ETTTEEE
T ss_pred EEEE-EEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeec-CCCCCeE
Confidence 1111 1222222211111221233455778889 89999999986 7789999997 55443 22 2233 3346799
Q ss_pred EecCCCCcceEEEEEEEcCCcCeeeE-EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 201 VVNCSESSEGRYTCKATNEAGTAETS-CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~g~~~~s-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
|.+++.+|+|.|+|.+.+........ ..+.+...+
T Consensus 187 i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~-------------------------------------------- 222 (772)
T 3v2a_R 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR-------------------------------------------- 222 (772)
T ss_dssp EEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCC--------------------------------------------
T ss_pred ecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCc--------------------------------------------
Confidence 99999999999999999764432222 222222110
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c--CCceeeEEeecCeeccccceeEEEE
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S--SPDIQVKWLKKGKEIKESARHIITS 356 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~--~p~~~i~W~~~g~~l~~~~~~~~~~ 356 (803)
.+.+....+....+.+|+.+.|.|.+ + .|.+.+.|++++..+..........
T Consensus 223 -------------------------~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 277 (772)
T 3v2a_R 223 -------------------------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277 (772)
T ss_dssp -------------------------EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC
T ss_pred -------------------------cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccc
Confidence 00111111222356679999999999 5 5678999999987765432211100
Q ss_pred cCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce
Q psy2776 357 RGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG 436 (803)
Q Consensus 357 ~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 436 (803)
... ...........|.|.+++.+|+|
T Consensus 278 ~~~------------------------------------------------------~~~~~~~~~~~L~i~~v~~~d~G 303 (772)
T 3v2a_R 278 KTQ------------------------------------------------------SGSEMKKFLSTLTIDGVTRSDQG 303 (772)
T ss_dssp -----------------------------------------------------------CCCEEEEEEEEESSCCSTTCS
T ss_pred ccc------------------------------------------------------ccccceEEEEEEEECcCCcCCCe
Confidence 000 00001122346999999999999
Q ss_pred eEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeecccc
Q psy2776 437 RYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLK 516 (803)
Q Consensus 437 ~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~ 516 (803)
.|+|.+.|..+.... .+.|.|..+|.+..... ...
T Consensus 304 ~Y~C~~~~~~~~~~~------------------------------------------~~~l~V~~~p~~~~~~~---~~~ 338 (772)
T 3v2a_R 304 LYTCAASSGLMTKKN------------------------------------------STFVRVHEKPFVAFGSG---MES 338 (772)
T ss_dssp EEEEEEECSSCEEEE------------------------------------------EEEEEEECCCC------------
T ss_pred EEEEEEEcCCcceeE------------------------------------------EEEEEEeCCCeeEeccC---CCC
Confidence 999999998876554 44555555554322111 112
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~ 594 (803)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+...... . ....|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus 339 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~--~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~ 413 (772)
T 3v2a_R 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--K---AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVV 413 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceE--c---cceeEEEecCChhcCceEEEEEEECCcCeEEEEEE
Confidence 456788999999999999999999999999988763221 1 35789999999999999999999998865 4566
Q ss_pred EEEEeeeE-------------------------eEeeecc-cccEEEeeee-----------------------------
Q psy2776 595 SLQVLGYI-------------------------IQQQEKN-SLKFTKVATL----------------------------- 619 (803)
Q Consensus 595 ~l~V~~~p-------------------------~~~~~~~-~~~w~~~~~~----------------------------- 619 (803)
.|.|..+| +...+.. .+.|.+....
T Consensus 414 ~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (772)
T 3v2a_R 414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccC
Confidence 67776665 1112233 3889885210
Q ss_pred --------------C---CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecccee
Q psy2776 620 --------------D---PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEK 682 (803)
Q Consensus 620 --------------~---~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 682 (803)
. .....+.+.++ .+.|.|+|.|.|..|....+....+.. +|.+...+. .
T Consensus 494 g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~-----------~p~i~~~p~-~ 559 (772)
T 3v2a_R 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR-----------GPEITLQPD-M 559 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC-----------CceeeccCC-c
Confidence 0 01134555554 678999999999999775443333321 444443332 4
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEE--------------------EeeCceEEEEEecCCCCCCce
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--------------------IFDGENIILELKEADSETDAG 742 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~--------------------~~~~~~~~L~i~~v~~~~D~G 742 (803)
.+.+|+.+.|.|.+.|.|.+.+.|+|+|..+........ ........|.|.++ +.+|+|
T Consensus 560 ~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G 638 (772)
T 3v2a_R 560 QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNA-SLQDQG 638 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCC-CccCCc
Confidence 577899999999999999999999999877654322111 11122456999999 799999
Q ss_pred eEEEEEEccCcceee--eEEEEE
Q psy2776 743 DYKVVATNELGSATH--GARVTV 763 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~--~~~l~V 763 (803)
.|+|.|.|..|.... .+.|.|
T Consensus 639 ~Y~C~a~n~~~~~~~s~~~~l~v 661 (772)
T 3v2a_R 639 DYVCLAQDRKTKKRHCVVRQLTV 661 (772)
T ss_dssp -----------------------
T ss_pred EEEEEEEeCCCCeEEEEEEeecc
Confidence 999999997766543 344444
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=370.55 Aligned_cols=412 Identities=16% Similarity=0.178 Sum_probs=265.1
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCC-CcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC--
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGP-ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-- 174 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~-~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-- 174 (803)
...|.|.+++.+|+|.|+|.+.+..|... .+.. ..+.+... ...+|.+...+....+.+|+.+.|.|.+.|.|++
T Consensus 69 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~-~~l~V~~~-~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~ 146 (523)
T 2rcj_C 69 SASLAISGLEAEDESDYYCASWNSSDNSYVFGTG-TKVTVLGQ-PKANPTVTLFPPSSEELQANKATLVCLISDFYPGAV 146 (523)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCccccccCc-eEEEeccC-CCcCCeEEecCCcccccCCCceEEEEEeccccCCce
Confidence 46899999999999999999999776321 1122 22333211 1356777666666677789999999999987764
Q ss_pred eeEEEEcCeeccceeEEE-----ecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEE
Q psy2776 175 DIKWYKDDSLIKGRNITY-----ENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIIT 245 (803)
Q Consensus 175 ~i~W~~~~~~~~~~~~~~-----~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~ 245 (803)
.+.|+|++..+....... .++ ...|.|.++..+|+|.|+|.|.|..+....++.+.+....
T Consensus 147 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~---------- 216 (523)
T 2rcj_C 147 TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSAS---------- 216 (523)
T ss_pred EEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCC----------
Confidence 899999998876432111 111 2469999999999999999999998866555443221110
Q ss_pred eecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecccccee
Q psy2776 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDAT 325 (803)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (803)
...+.+....+. ..+.+|+.+.
T Consensus 217 ---------------------------------------------------------~~~P~v~~~~~~-~~~~~G~~~~ 238 (523)
T 2rcj_C 217 ---------------------------------------------------------TKGPSVFPLAPS-SKSTSGGTAA 238 (523)
T ss_pred ---------------------------------------------------------CcCCEEEecCCC-cccccCCceE
Confidence 000011111111 2235699999
Q ss_pred EEEEe-cC-Cce-eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeee
Q psy2776 326 FQVEL-SS-PDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFE 402 (803)
Q Consensus 326 l~C~~-~~-p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~ 402 (803)
|.|.+ +. |.+ ++.|+|+|..+.......+. ...|.|.
T Consensus 239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~---------------~~~g~~~------------------------- 278 (523)
T 2rcj_C 239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVL---------------QSSGLYS------------------------- 278 (523)
T ss_pred EEEEEeceeCCCeEEEEecCCcccceEeCCcEe---------------cCCCcEE-------------------------
Confidence 99999 64 766 89999998775421110000 0111111
Q ss_pred eeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhc
Q psy2776 403 SKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQ 482 (803)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 482 (803)
....|.|.++..+| |.|+|.|.|..|.....
T Consensus 279 ------------------~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~------------------------------ 309 (523)
T 2rcj_C 279 ------------------LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD------------------------------ 309 (523)
T ss_pred ------------------EEEEEEechhhcCC-ceEEEEEEeCCCCcceE------------------------------
Confidence 12359999999999 99999999998875542
Q ss_pred ccccccccccceeeeccCCCCCCccceeeeccccce-EEeecceeEEEEEEcCcCC----CeeEEeeCCeeecCCCcEEE
Q psy2776 483 KLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ-RLSVKSQWKVEVKYFGFPR----PEISWMKNGAEITDSKACRI 557 (803)
Q Consensus 483 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~-~v~~g~~v~l~C~~~g~p~----~~v~W~~~g~~i~~~~~~~~ 557 (803)
..|.+...|.. .+ ..+... .+.+|+.+.|.|.+.|.|+ +.++|+|+|..+........
T Consensus 310 ------------~~l~v~~~P~~---~~--~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~ 372 (523)
T 2rcj_C 310 ------------KRVEPLSLPSV---FL--FPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR 372 (523)
T ss_pred ------------EecCCCcCceE---Ee--cCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCc
Confidence 22223222221 11 111112 3678999999999998754 48999999998876543221
Q ss_pred EecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccc
Q psy2776 558 FIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632 (803)
Q Consensus 558 ~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 632 (803)
....+ .+.|.|.++..+|+|.|+|.|.|..+.......|.+..
T Consensus 373 ~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-------------------------------- 420 (523)
T 2rcj_C 373 EQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK-------------------------------- 420 (523)
T ss_pred eecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEccc--------------------------------
Confidence 11111 25699999999999999999999887765554444210
Q ss_pred cCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecCCC--ceEEeeC
Q psy2776 633 DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAP--SIVWFRN 709 (803)
Q Consensus 633 ~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~--~v~W~~~ 709 (803)
....+|.+...+.. ..+. |+.++|.|.+.|.|++ .|.|++|
T Consensus 421 -----------------------------------~~~~~P~v~~~~~~~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k~ 464 (523)
T 2rcj_C 421 -----------------------------------GQPREPQVYTLPPSREEMT-KNQVSLTCLVKGFYPSDIAVEWESN 464 (523)
T ss_pred -----------------------------------CCCCCCEEEEeCCChHHcc-CCceEEEEEEEeeECCCCEEEEEEC
Confidence 00114555443333 2333 4449999999998766 8999999
Q ss_pred CeeccCCCCeEE--EeeCce---EEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 710 NKPLLSSPKKRE--IFDGEN---IILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 710 ~~~l~~~~~~~~--~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|.++........ ..++.. ..|.|... ..+|+|.|+|.|.|....
T Consensus 465 g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~-~~~~~g~Y~C~a~n~~l~ 513 (523)
T 2rcj_C 465 GQPENNYKTTPPVLDSDGSFFLYSKLTVDKS-RWQQGNVFSCSVMHEALH 513 (523)
T ss_pred CEECCCeeeccceeCCCCCEEEEEEEEEChH-HccCCCeEEEEEEcCCcC
Confidence 999875433222 223332 23555554 347899999999997654
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=366.63 Aligned_cols=367 Identities=20% Similarity=0.296 Sum_probs=271.2
Q ss_pred CCCeeeccCcCeee---ecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecCCC-CcceEEEEE
Q psy2776 143 EAPVIQEPLKDSVA---GFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCSE-SSEGRYTCK 215 (803)
Q Consensus 143 ~~p~i~~~~~~~~v---~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~ 215 (803)
.+|.|...|.+..+ .+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++...+ ..|.|.++.. +|+|.|+|.
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~--~~L~i~~~~~~~D~G~Y~C~ 80 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--GDLVISNPVKAKDAGSYQCV 80 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET--TEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeC--CeEEEecccccccCEEEEEE
Confidence 46778887777766 6899999999999999999999999998763 3344433 4799999997 999999999
Q ss_pred EEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 216 ATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 216 a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
|.|..|.... .+.|.|...+.
T Consensus 81 a~n~~g~~~s~~~~l~v~~~~~---------------------------------------------------------- 102 (382)
T 1cs6_A 81 ATNARGTVVSREASLRFGFLQE---------------------------------------------------------- 102 (382)
T ss_dssp EEETTEEEECCCEEEEEEEECC----------------------------------------------------------
T ss_pred EEcCCcEEEecceEEEeecccc----------------------------------------------------------
Confidence 9999886533 46666654421
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccc--cceeEEEEcCceeEEEEeecCC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKE--SARHIITSRGTQRKLVIKRVTQ 370 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~--~~~~~~~~~~~~~~l~i~~~~~ 370 (803)
+....+....+.+|+.+.|.|.+ +.|.+.+.|++++.++.. +.+..+
T Consensus 103 -------------~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~---------------- 153 (382)
T 1cs6_A 103 -------------FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV---------------- 153 (382)
T ss_dssp -------------CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE----------------
T ss_pred -------------ccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE----------------
Confidence 11111233456679999999996 578899999999876532 111111
Q ss_pred CCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeee
Q psy2776 371 DDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450 (803)
Q Consensus 371 ~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~ 450 (803)
......|.|.+++.+|+|.|+|.+.|..|...
T Consensus 154 ------------------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 185 (382)
T 1cs6_A 154 ------------------------------------------------SQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 185 (382)
T ss_dssp ------------------------------------------------CTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred ------------------------------------------------ecCceEEEEEeeCcccCeeEEEEEEEcccccc
Confidence 01122488888899999999999998774333
Q ss_pred eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEE
Q psy2776 451 TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEV 530 (803)
Q Consensus 451 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C 530 (803)
.... .. .+.+.+... +.+..+|. +.........+.+|+.+.|.|
T Consensus 186 ~~~~--s~--~~~l~v~~~---------------------------~~~~~~P~-----~~~~~~~~~~~~~G~~v~l~C 229 (382)
T 1cs6_A 186 KSVF--SK--FSQLSLAAE---------------------------DARQYAPS-----IKAKFPADTYALTGQMVTLEC 229 (382)
T ss_dssp EEEE--CC--CEEEEEESC---------------------------CCCCEEEE-----EEECCCSEEEEETTCCEEEEC
T ss_pred ceeE--cc--ceeeccchh---------------------------hcccCCCc-----eeccCCCceEEeCCCeEEEEE
Confidence 2110 00 001111000 00111121 111112356788999999999
Q ss_pred EEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeeccc
Q psy2776 531 KYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNS 610 (803)
Q Consensus 531 ~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~ 610 (803)
.+.|.|.+.+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 230 ~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---------- 293 (382)
T 1cs6_A 230 FAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA---------- 293 (382)
T ss_dssp EEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------
T ss_pred EEccCCCCEEEEEECCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec----------
Confidence 9999999999999998776541 123456899999999999999999999999998888998876
Q ss_pred ccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeE
Q psy2776 611 LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI 690 (803)
Q Consensus 611 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v 690 (803)
+|.+...+....+.+|+.+
T Consensus 294 -------------------------------------------------------------~p~~~~~~~~~~~~~g~~~ 312 (382)
T 1cs6_A 294 -------------------------------------------------------------QPDWLDVITDTEADIGSDL 312 (382)
T ss_dssp -------------------------------------------------------------EEEEEECCCCEEEETTCCE
T ss_pred -------------------------------------------------------------CCCcccCCCccEEcCCCeE
Confidence 4455566667788999999
Q ss_pred EEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 691 ~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+.|.|.|.+.|+++|.++..+.++.+. +. .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 313 ~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~--~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 313 RWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKL-VLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp EEECEEEEESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeeeecCCEEEEEECCEECCCCceEEEE--CC--EEEECcC-CcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99999999999999999999999888776543 33 6999999 7999999999999999999999999884
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=363.22 Aligned_cols=358 Identities=17% Similarity=0.251 Sum_probs=257.2
Q ss_pred CCeeeccCcC-eeeecCCcEEEEEEECccCCCeeEEEE-cCeeccce-eEEEecCeeEEEEecCCCCc------ceEEEE
Q psy2776 144 APVIQEPLKD-SVAGFQSSVTLECVVSGVPTPDIKWYK-DDSLIKGR-NITYENNVARFTVVNCSESS------EGRYTC 214 (803)
Q Consensus 144 ~p~i~~~~~~-~~v~~G~~~~L~C~~~g~p~p~i~W~~-~~~~~~~~-~~~~~~~~~~L~i~~v~~~d------~G~Y~C 214 (803)
+|.|...+.+ +.+.+|+.+.|.|.+.|.|.|++.|+| ++..+... .........+|.|.+++.+| +|.|+|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C 82 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 82 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEE
Confidence 5667766665 557899999999999999999999999 77766532 11122234579999999997 999999
Q ss_pred EEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 215 KATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 215 ~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
.|.|..|... ..+.|.+...+.
T Consensus 83 ~a~n~~g~~~s~~~~v~v~~~p~--------------------------------------------------------- 105 (388)
T 2v5m_A 83 LARNQFGSIISRDVHVRAVVAQY--------------------------------------------------------- 105 (388)
T ss_dssp EEEETTEEEECCCEEEEEECCCC---------------------------------------------------------
T ss_pred EEEccCCeEEecceEEEEccccc---------------------------------------------------------
Confidence 9999988642 345555544321
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC---ceeeEEeecCeeccccc-----eeEEEEcCceeEEE
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP---DIQVKWLKKGKEIKESA-----RHIITSRGTQRKLV 364 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p---~~~i~W~~~g~~l~~~~-----~~~~~~~~~~~~l~ 364 (803)
+.. .+....+.+|+.+.|.|.+ +.+ .+.+.|++++..+.... +..+.
T Consensus 106 --------------~~~-~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--------- 161 (388)
T 2v5m_A 106 --------------YEA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL--------- 161 (388)
T ss_dssp --------------CCC-BCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC---------
T ss_pred --------------ccc-CccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc---------
Confidence 111 1223345679999999999 543 48999999987653211 11111
Q ss_pred EeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCc-eeEEEEee
Q psy2776 365 IKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSE-GRYTCKAT 443 (803)
Q Consensus 365 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~ 443 (803)
....|.|.+++.+|. |.|+|.+.
T Consensus 162 --------------------------------------------------------~~~~L~i~~v~~~d~~G~Y~C~~~ 185 (388)
T 2v5m_A 162 --------------------------------------------------------PSGELHIREVGPEDGYKSYQCRTK 185 (388)
T ss_dssp --------------------------------------------------------TTSCEEESSCCGGGGGCCEEEEEE
T ss_pred --------------------------------------------------------cCCcEEEecCCccccCeeEEEEec
Confidence 112488899999999 99999999
Q ss_pred CCceeeee-ecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEee
Q psy2776 444 NEAGTAET-RTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522 (803)
Q Consensus 444 ~~~g~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~ 522 (803)
|..+.... +.. ...|.|..++................+.+
T Consensus 186 n~~~~~~~~~~~---------------------------------------~~~l~v~~~~~~~~p~~~~~~~~~~~v~~ 226 (388)
T 2v5m_A 186 HRLTGETRLSAT---------------------------------------KGRLVITEPISSSAPRTPALVQKPLELMV 226 (388)
T ss_dssp ETTTCCEEECSS---------------------------------------CBCEEEECCCSCEEEECCSSCCCCEEEET
T ss_pred cCCCCceeeccc---------------------------------------cceEEEecCCcCCCCcCccccCCceEEee
Confidence 87543322 110 11222322211100000000112356788
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeec------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEIT------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
|+.+.|.|.+.|.|.+.+.|+|++..+. ...+... ..+.|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus 227 G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 302 (388)
T 2v5m_A 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302 (388)
T ss_dssp TSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE----ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred CCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec----ccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence 9999999999999999999999854332 2222221 13589999999999999999999999999999999
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|..+| .+.
T Consensus 303 ~V~~~p-----------------------------------------------------------------------~~~ 311 (388)
T 2v5m_A 303 TVTAPL-----------------------------------------------------------------------SAK 311 (388)
T ss_dssp EEEEEE-----------------------------------------------------------------------EEE
T ss_pred EEeCCC-----------------------------------------------------------------------ccc
Confidence 987743 344
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..+. ..|.|.++ +.+|+|.|+|.|.|.+|..+
T Consensus 312 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~----------~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~ 380 (388)
T 2v5m_A 312 IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESV-KKEDKGMYQCFVRNDRESAE 380 (388)
T ss_dssp EESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS----------SEEEESSC-CGGGCEEEEEEEECSSCEEE
T ss_pred cCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC----------CEEEEecC-ChhhCEEEEEEEEcCCCcEE
Confidence 45556788999999999999999999999999999986532 36999999 78999999999999999999
Q ss_pred eeEEEEE
Q psy2776 757 HGARVTV 763 (803)
Q Consensus 757 ~~~~l~V 763 (803)
.++.|.|
T Consensus 381 ~~~~l~V 387 (388)
T 2v5m_A 381 ASAELKL 387 (388)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999887
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=372.97 Aligned_cols=368 Identities=15% Similarity=0.163 Sum_probs=254.8
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-eEEEec-CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEE
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-NITYEN-NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 230 (803)
...+.+|++++|+|.+.+.|...+.|++++..+... .+..++ ...+|.|.+++.+|+|.|+|.|.|..+.....+.|.
T Consensus 57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~ 136 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136 (527)
T ss_dssp EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEE
T ss_pred eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEE
Confidence 688999999999999998888899999999876532 222222 335699999999999999999999888766666665
Q ss_pred EeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccc
Q psy2776 231 VQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLS 310 (803)
Q Consensus 231 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (803)
|...+....
T Consensus 137 v~~~~~~~~----------------------------------------------------------------------- 145 (527)
T 3qs9_E 137 IRNTLLYTL----------------------------------------------------------------------- 145 (527)
T ss_dssp EC-----CE-----------------------------------------------------------------------
T ss_pred ECCceeecc-----------------------------------------------------------------------
Confidence 542110000
Q ss_pred cCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 311 KLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
........++.+.|.|.+ |.|.|.+.|++++.++..... ...
T Consensus 146 --~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~---~~~-------------------------------- 188 (527)
T 3qs9_E 146 --RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE---ESP-------------------------------- 188 (527)
T ss_dssp --EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-----------------------------------------------
T ss_pred --CCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc---cCC--------------------------------
Confidence 000112336678899999 999999999998765431100 000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
.........+..+|+|.|+|.|.|..|.....
T Consensus 189 -------------------------------~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~----------------- 220 (527)
T 3qs9_E 189 -------------------------------AVVKKEEKVLHELFGTDIRCCARNELGRECTR----------------- 220 (527)
T ss_dssp --------------------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEE-----------------
T ss_pred -------------------------------cEEEEeeeeccccCCEEEEEEEEeCCCcccce-----------------
Confidence 00011122245789999999999998887662
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCee
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAE 548 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.++. ....+.+|+.+.|.|.+. |.|.+.++|+++|..
T Consensus 221 ------------------------~~~l~V~~~p~~~p--------~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~ 268 (527)
T 3qs9_E 221 ------------------------LFTIDLNQTPQTTL--------PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA 268 (527)
T ss_dssp ------------------------CEEEESSSCCCCSC--------CEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC
T ss_pred ------------------------EEEEEEeccCccCC--------CceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE
Confidence 35666666665422 256788999999999996 999999999999998
Q ss_pred ecCCCcEEEEe--c----CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCc
Q psy2776 549 ITDSKACRIFI--D----EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPS 622 (803)
Q Consensus 549 i~~~~~~~~~~--~----~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~ 622 (803)
+.....+.... . ....+|.|.++..+|+|.|+|.|.|. .+.++.|.|..+|
T Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p-------------------- 325 (527)
T 3qs9_E 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG-------------------- 325 (527)
T ss_dssp CCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--C--------------------
T ss_pred CCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccC--------------------
Confidence 87654332211 1 12357999999999999999999998 6777888886633
Q ss_pred cceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEec--cceeEEecCCeEEEEEEEeecC
Q psy2776 623 TLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER--FEEKTVKEKGTIRLMAKVKASP 700 (803)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~v~~g~~v~L~C~~~g~p 700 (803)
.+... .....+.+|+.+.|.|.+.|.|
T Consensus 326 ---------------------------------------------------~i~~~~~~~~~~v~~G~~v~L~C~~~g~P 354 (527)
T 3qs9_E 326 ---------------------------------------------------FINATNSSEDYEIDQYEEFCFSVRFKAYP 354 (527)
T ss_dssp ---------------------------------------------------EEECCCSCCEECCCTTCCCCEEEEEEEES
T ss_pred ---------------------------------------------------ccccccCcccEEEcCCCeEEEEEEEEecC
Confidence 22111 1235678899999999999999
Q ss_pred CCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCCCcccCCcc
Q psy2776 701 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDL 780 (803)
Q Consensus 701 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~~~~~ 780 (803)
.|.+.|+|+|.+|..+.++. .....|.|.++ +.+|+|.|+|.|.|..|..+..+.|.|. .||.+..... .
T Consensus 355 ~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v-~~~D~G~YtC~A~N~~g~~~~~~~L~V~----~~P~i~~~~~-~ 424 (527)
T 3qs9_E 355 QIRCTWTFSRKSFPCEQKGL----DNGYSISKFCN-HKHQPGEYIFHAENDDAQFTKMFTLNIR----RKPQVLAEAS-A 424 (527)
T ss_dssp CCEEEEEETTEEEECBCCBC----SSSSEEEEECC-CTTCCSCEEEEEEETTEEEEEEEEEC------CCCEEEECCC-C
T ss_pred CCEEEEEECCEECcCCcccc----cCCcEEEEecC-CcccCEEEEEEEEeCCCcEEEEEEEEEe----cCCeEEEeCC-C
Confidence 99999999999997665532 13346999999 7999999999999999999998888885 4565543322 2
Q ss_pred ceeeeeeeeEEE
Q psy2776 781 NHVHYLAQSTEV 792 (803)
Q Consensus 781 ~~~~~~~~~~~~ 792 (803)
.+|+|.+.|.|-
T Consensus 425 ~~l~C~a~g~P~ 436 (527)
T 3qs9_E 425 SQASCFSDGYPL 436 (527)
T ss_dssp E---EEEECSSC
T ss_pred CEEEEEEEEEcC
Confidence 357888887764
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=353.75 Aligned_cols=372 Identities=14% Similarity=0.203 Sum_probs=243.9
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc-------------ceeEEE--ecCeeEEEEecCCCCcceEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK-------------GRNITY--ENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~-------------~~~~~~--~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+..+.+.+|+.+.|.|.+.+.|.+.+.|+|++. .+. ..++.. .+....|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (523)
T 2rcj_C 7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY 86 (523)
T ss_pred CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence 456788899999999999998999999999752 111 122222 234568999999999999999
Q ss_pred EEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 214 CKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 214 C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
|.|.|..|.. ...+.|.|...+..
T Consensus 87 C~a~n~~g~~~~~~~~~~l~V~~~~~~----------------------------------------------------- 113 (523)
T 2rcj_C 87 CASWNSSDNSYVFGTGTKVTVLGQPKA----------------------------------------------------- 113 (523)
T ss_pred EEEccCCCccccccCceEEEeccCCCc-----------------------------------------------------
Confidence 9999987642 23455666432100
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc--eeeEEeecCeeccccceeEEEEcCceeEEEEee
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD--IQVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~--~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 367 (803)
+ +.+... +......+|+.+.|.|.+ +.|+ +.+.|+|+|.++..+......
T Consensus 114 ------------~--P~~~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~------------ 166 (523)
T 2rcj_C 114 ------------N--PTVTLF-PPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKP------------ 166 (523)
T ss_pred ------------C--CeEEec-CCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccc------------
Confidence 0 001111 111223458899999999 6554 499999999988754321100
Q ss_pred cCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCce
Q psy2776 368 VTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447 (803)
Q Consensus 368 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g 447 (803)
.....|.|.+ ...|.|.++..+|+|.|+|.|.|..+
T Consensus 167 -~~~~~~~~~~-------------------------------------------~s~L~i~~~~~~d~G~Y~C~a~n~~~ 202 (523)
T 2rcj_C 167 -SKQSNNKYAA-------------------------------------------SSYLSLTPEQWKSHRSYSCQVTHEGS 202 (523)
T ss_pred -cccCCCCEEE-------------------------------------------EEEEEEechhcCCCceEEEEEEecCc
Confidence 0111122221 13489999999999999999999877
Q ss_pred eeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeE
Q psy2776 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWK 527 (803)
Q Consensus 448 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~ 527 (803)
....... + . ....+..+|. +.... ....+.+|+.+.
T Consensus 203 ~~~~~~~---------~--~---------------------------~~~~~~~~P~---v~~~~---~~~~~~~G~~~~ 238 (523)
T 2rcj_C 203 TVEKTVA---------P--T---------------------------ECSASTKGPS---VFPLA---PSSKSTSGGTAA 238 (523)
T ss_pred cccccee---------e--e---------------------------ecCCCCcCCE---EEecC---CCcccccCCceE
Confidence 6544210 0 0 0001112221 11111 123457899999
Q ss_pred EEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 528 VEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 528 l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
|.|.+.|. |.| .++|+|+|..+.......+....+ .+.|.|.++..+| |.|+|.|.|..|.......|.|...
T Consensus 239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~ 317 (523)
T 2rcj_C 239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL 317 (523)
T ss_pred EEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC
Confidence 99999987 777 899999998754321111111111 3589999999999 9999999999998776666655331
Q ss_pred EeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce
Q psy2776 602 IIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE 681 (803)
Q Consensus 602 p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 681 (803)
|+.++..+..
T Consensus 318 ----------------------------------------------------------------------P~~~~~~p~~ 327 (523)
T 2rcj_C 318 ----------------------------------------------------------------------PSVFLFPPKP 327 (523)
T ss_pred ----------------------------------------------------------------------ceEEecCCCc
Confidence 1222333333
Q ss_pred eE-EecCCeEEEEEEEeecCC----CceEEeeCCeeccCCCCeEEEe--eCc---eEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 682 KT-VKEKGTIRLMAKVKASPA----PSIVWFRNNKPLLSSPKKREIF--DGE---NIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 682 ~~-v~~g~~v~L~C~~~g~p~----~~v~W~~~~~~l~~~~~~~~~~--~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.. +.+|+.+.|.|.+.|.|+ +.|.|+|+|.++.......... ++. ...|.|.++ ..+|+|.|+|.|.|.
T Consensus 328 ~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~-~~~d~G~Y~C~a~n~ 406 (523)
T 2rcj_C 328 KDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQ-NWLDGKEYKCKVSNK 406 (523)
T ss_pred hhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHH-HhcCCCeEEEEEeCC
Confidence 33 788999999999999754 4899999999987654322111 121 246889888 689999999999999
Q ss_pred CcceeeeEEEE
Q psy2776 752 LGSATHGARVT 762 (803)
Q Consensus 752 ~G~~~~~~~l~ 762 (803)
.|.......|.
T Consensus 407 ~~~~~~~~~~~ 417 (523)
T 2rcj_C 407 ALPAPIEKTIS 417 (523)
T ss_pred CCCCceeEEEE
Confidence 88876655554
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=353.10 Aligned_cols=410 Identities=13% Similarity=0.151 Sum_probs=271.9
Q ss_pred CceEEEEEeeccCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCce-EEEecCCeEEEEeeCCCCCCCCCeEEEEEEe
Q psy2776 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLHWRPPQDDGHSPVTGYVLES 82 (803)
Q Consensus 4 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~~~-~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~ 82 (803)
+..+|+|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.....+. .....|..++|.|........ +...|....
T Consensus 73 g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-~~v~W~k~~ 151 (585)
T 2ocw_A 73 GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQ-KRKSLYKQI 151 (585)
T ss_pred CEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCC-ccEEEEECC
Confidence 346899999999999999999999999888899999999887655443 445679999999987433221 222222211
Q ss_pred ecC---------------CCceeEEEeee--eeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCC
Q psy2776 83 HDK---------------DEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145 (803)
Q Consensus 83 ~~~---------------~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p 145 (803)
... ...+.....+. ....|.|.+++.+|+|.|+|.+.|..|... .... +.+.. .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~~-l~V~~----~~- 223 (585)
T 2ocw_A 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK--KNAD-LQVLK----PE- 223 (585)
T ss_pred CCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcccc--ceEE-EEEcc----CC-
Confidence 110 00001111010 123799999999999999999998877532 2222 22221 11
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCC---CeeEEE-EcCee----cc---------ceeEEEe----cCeeEEEEecC
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWY-KDDSL----IK---------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~-~~~~~----~~---------~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|+.+.|.|.+. .|. +.+.|+ +++.. +. ..++... ++...|.|.++
T Consensus 224 -----p~~~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v 297 (585)
T 2ocw_A 224 -----PELVYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGL 297 (585)
T ss_pred -----CceeEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccC
Confidence 2335577999999999974 444 678897 77731 11 1222222 23348999999
Q ss_pred CCCcceEEEEEEEcCCcCee-----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 205 SESSEGRYTCKATNEAGTAE-----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
+.+|+|.|+|.|.|. |... .++.|.|...+..
T Consensus 298 ~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~------------------------------------------ 334 (585)
T 2ocw_A 298 RKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTI------------------------------------------ 334 (585)
T ss_pred ChhhCEEEEEEEEcC-CCccccCceeeEEEEEeccccc------------------------------------------
Confidence 999999999999995 4443 5667777655310
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceee----EEee--cCe--eccccc
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQV----KWLK--KGK--EIKESA 350 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i----~W~~--~g~--~l~~~~ 350 (803)
...+....+.+|+.+.|.|.+ +.|.+.+ .|++ +|. .+....
T Consensus 335 ------------------------------~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~ 384 (585)
T 2ocw_A 335 ------------------------------PRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE 384 (585)
T ss_pred ------------------------------ccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeec
Confidence 111333445679999999999 8888876 7999 876 554321
Q ss_pred eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEec
Q psy2776 351 RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNC 430 (803)
Q Consensus 351 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 430 (803)
......... ++.+.. ...++..+|+|.++
T Consensus 385 ~~~~~~~~~--r~~~~~-------------------------------------------------~~~~g~~~L~I~~v 413 (585)
T 2ocw_A 385 GWVKAQYEG--RLSLLE-------------------------------------------------EPGNGTFTVILNQL 413 (585)
T ss_pred ceeecccCC--CEEEec-------------------------------------------------cCCCcEEEEEECCC
Confidence 111000000 000000 00234456999999
Q ss_pred cCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC-CCCccce
Q psy2776 431 SESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP-PQQPAIK 509 (803)
Q Consensus 431 ~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~-p~~~~~~ 509 (803)
+.+|+|.|+|.| |..|.... .+.|.|..+ |.+..
T Consensus 414 ~~~D~G~Y~C~a-n~~g~~~~------------------------------------------~~~l~V~~~~p~~~~-- 448 (585)
T 2ocw_A 414 TSRDAGFYWCLT-NGDTLWRT------------------------------------------TVEIKIIEGEPNLKV-- 448 (585)
T ss_pred ChhhCEEEEEcc-cCCCccce------------------------------------------eEEEEEecCcccccc--
Confidence 999999999999 77766544 344455442 22211
Q ss_pred eeeccccceEEeecceeEEEEEEc----CcCCCeeEEeeCCeeecCCCc------E-EEEecCCeEEEEEeeeccCcCeE
Q psy2776 510 LVDSNLKSQRLSVKSQWKVEVKYF----GFPRPEISWMKNGAEITDSKA------C-RIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 510 ~~~~~~~~~~v~~g~~v~l~C~~~----g~p~~~v~W~~~g~~i~~~~~------~-~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
+....+.+|+.+.|.|.+. |.|.+.+.|+|+|..+..... + .+...+....|.|.++..+|+|.
T Consensus 449 -----~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 523 (585)
T 2ocw_A 449 -----PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523 (585)
T ss_pred -----CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeE
Confidence 2356789999999999997 678889999999988754321 1 11112334799999999999999
Q ss_pred EEEEEEcCCCCeE-EEEEEEEeeeE
Q psy2776 579 YTVTATNAAGSTS-LDLSLQVLGYI 602 (803)
Q Consensus 579 Y~C~a~n~~g~~s-~s~~l~V~~~p 602 (803)
|+|.|.|..|... ..+.|.|..+|
T Consensus 524 Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 524 YWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred EEEEeEeCCCccEEEEEEEEEEeee
Confidence 9999999998755 44899998876
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=309.66 Aligned_cols=274 Identities=25% Similarity=0.413 Sum_probs=228.5
Q ss_pred ccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 310 SKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 310 ~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
...|....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+....+.
T Consensus 9 ~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--------------------------------- 55 (284)
T 2rik_A 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT--------------------------------- 55 (284)
T ss_dssp EECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEE---------------------------------
T ss_pred EccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEE---------------------------------
Confidence 334555667789999999999 8899999999999888765443322
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
...+...|.|.+++.+|+|.|+|.+.|..|....
T Consensus 56 -----------------------------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~----------------- 89 (284)
T 2rik_A 56 -----------------------------LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC----------------- 89 (284)
T ss_dssp -----------------------------EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE-----------------
T ss_pred -----------------------------EcCCEEEEEEecCCcccCEEEEEEEEECCceEEE-----------------
Confidence 2234456888999999999999999998887654
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.+.. .......+.+|+.+.|.|.+.|.|.+.+.|+++|..
T Consensus 90 -------------------------~~~l~V~~~p~~~~-----~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~ 139 (284)
T 2rik_A 90 -------------------------SAQLGVQEPPRFIK-----KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139 (284)
T ss_dssp -------------------------EEEEEEECCCEEEE-----CCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEE
T ss_pred -------------------------EEEEEccCCCcccc-----cCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEE
Confidence 44555555554211 111245678999999999999999999999999999
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~ 628 (803)
+....++.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 140 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---------------------------- 191 (284)
T 2rik_A 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE---------------------------- 191 (284)
T ss_dssp CCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----------------------------
T ss_pred CcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec----------------------------
Confidence 9888887777777789999999999999999999999999999888888866
Q ss_pred cccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee
Q psy2776 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708 (803)
Q Consensus 629 ~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~ 708 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 192 -------------------------------------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~ 228 (284)
T 2rik_A 192 -------------------------------------------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 228 (284)
T ss_dssp -------------------------------------------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEE
T ss_pred -------------------------------------------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEE
Confidence 4555555566778899999999999999999999999
Q ss_pred CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 709 NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 709 ~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|.+|..+..+.|.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 229 DKRELRSGKKYKIMSENFLTSIHILNV-DSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp TTEEECBTTTEEEEEETTEEEEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEECcCCCCEEEEEcCCEEEEEEcCC-CcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 999999998988888888889999999 7899999999999999999999998884
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=340.91 Aligned_cols=372 Identities=16% Similarity=0.170 Sum_probs=249.4
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCee-----EEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDI-----KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i-----~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
...|.+..+.+|+.+.|.|.+.| |.|.+ .|+|++..+.. .....|.|.+++. |+| |+|.|.+..+.
T Consensus 3 ~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~------~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~ 73 (450)
T 1z7z_I 3 SVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG------NNRKVYELSNVQE-DSQ-PMCYSNCPDGQ 73 (450)
T ss_dssp EEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST------TTEEEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred ccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC------CCceEEEEEeccc-CCe-eEEEEeCCCCc
Confidence 34567788899999999999999 88988 99998764432 2335799999987 999 99999877666
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
....+.|.|...|.
T Consensus 74 ~~~~~~l~V~~~P~------------------------------------------------------------------ 87 (450)
T 1z7z_I 74 STAKTFLTVYWTPE------------------------------------------------------------------ 87 (450)
T ss_dssp EEEECEEEEEBCCS------------------------------------------------------------------
T ss_pred ceeEEEEEEEeCCC------------------------------------------------------------------
Confidence 66777888775421
Q ss_pred CccccccccCCceeeeccccceeEEEEe-cCCce---eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI---QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~---~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
++...+....+.+|+.+.|.|.+ +.|.+ ++.|+|+|.++..+....
T Consensus 88 -----~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~------------------------- 137 (450)
T 1z7z_I 88 -----RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG------------------------- 137 (450)
T ss_dssp -----EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-------------------------
T ss_pred -----cceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc-------------------------
Confidence 01111222345679999999999 77776 999999998876432100
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
......|.|.++..+|+|.|+|.|.|..|......
T Consensus 138 ----------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~----- 172 (450)
T 1z7z_I 138 ----------------------------------------EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL----- 172 (450)
T ss_dssp ----------------------------------------TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE-----
T ss_pred ----------------------------------------cccceEEEEEeeccccCceEEEEEEcccCCCCceE-----
Confidence 01123588899999999999999998876433210
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCc-C
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P 536 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p 536 (803)
...+. ....|.+...| ..|.+. ....+.+|+.+.|.|.+.|. |
T Consensus 173 ----~~~~s-------------------------~~~~l~v~~~~~~~p~~~------~~~~v~~G~~v~l~C~~~g~~P 217 (450)
T 1z7z_I 173 ----FENTS-------------------------APYQLQTFVLPATPPQLV------SPRVLEVDTQGTVVCSLDGLFP 217 (450)
T ss_dssp ----EEEEC-------------------------CCEECEECCCCSSCCEEE------CCSEEETTSEEEEEEEEESCTT
T ss_pred ----Eeecc-------------------------CccceeeeccCCCCCEec------CceeEEeCCcEEEEEEeeCCCC
Confidence 00000 12333444332 222111 12678899999999999998 7
Q ss_pred --CCeeEEeeCCeeecCCCcEEEEecCCeEEEE-EeeeccCcCe--EEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccc
Q psy2776 537 --RPEISWMKNGAEITDSKACRIFIDEETSTIA-IYSVVRADTS--TYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 537 --~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~-i~~v~~~dsG--~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
.+.+.|+++|..+.. + +....+...+. ..++..+|+| .|+|.|.|..|....++.|.|...+
T Consensus 218 ~~~~~~~W~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~--------- 284 (450)
T 1z7z_I 218 VSEAQVHLALGDQRLNP--T--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP--------- 284 (450)
T ss_dssp GGGCEEEEEETTEECCC--E--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC---------
T ss_pred CCceEEEEeCCCEeCCc--e--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC---------
Confidence 689999999998865 2 33333333322 2277999999 9999999999998888889887644
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
+|.+... ...+.+|+.++
T Consensus 285 ------------------------------------------------------------~p~i~~~--~~~v~~G~~v~ 302 (450)
T 1z7z_I 285 ------------------------------------------------------------APNVILT--KPEVSEGTEVT 302 (450)
T ss_dssp ------------------------------------------------------------CCEEEES--CSEEETTCEEE
T ss_pred ------------------------------------------------------------CCeEecC--CeeEeCCCcEE
Confidence 4555432 45789999999
Q ss_pred EEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc----ceeeeEEEEEEeec
Q psy2776 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG----SATHGARVTVDVEK 767 (803)
Q Consensus 692 L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G----~~~~~~~l~V~~~~ 767 (803)
|.|.+. |.|.+.| +|.++.. .+....|.|.++ ..+|+|.|+|.|.|..| ..+.++.|.|..++
T Consensus 303 l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P 369 (450)
T 1z7z_I 303 VKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKAT-PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 369 (450)
T ss_dssp EEEEC----------------------------CCCCCEEEECC-GGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEE
T ss_pred EEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecC-cccCCceEEEEEEcCCCCcccccceeEEEEEecCC
Confidence 999997 8999999 7777622 123347999999 78999999999998776 44577788886554
Q ss_pred cCCCC-----CcccCCccceeeeeeeeEEE
Q psy2776 768 VGRPS-----INSIDIDLNHVHYLAQSTEV 792 (803)
Q Consensus 768 ~~pp~-----~~~~~~~~~~~~~~~~~~~~ 792 (803)
..... +.....+..+|+|.+.|.|-
T Consensus 370 ~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~ 399 (450)
T 1z7z_I 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPL 399 (450)
T ss_dssp ECCSTTSCSEEEEETTCEECCCCCCEEESC
T ss_pred ceeeccCCCceeEcCCCeEEEEEecccCCC
Confidence 33211 12334455588888888773
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=331.48 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=235.9
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcCeecc---------------ceeEEE-----ecCeeEEEEecCCCCcceEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---------------GRNITY-----ENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~---------------~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+. ..++.. ..+...|.|.+++.+|+|.|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence 567899999999999999999999999985311 112222 224567999999999999999
Q ss_pred EEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 214 CKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 214 C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
|.|.|..+ .+.|.|.....
T Consensus 84 C~~~n~~~----~~~l~V~~~~~--------------------------------------------------------- 102 (363)
T 1wio_A 84 CEVEDQKE----EVQLLVFGLTA--------------------------------------------------------- 102 (363)
T ss_dssp EEETTEEE----EEEEEEEEEEE---------------------------------------------------------
T ss_pred EEEEECCC----cEEEEEEeCCC---------------------------------------------------------
Confidence 99998743 55555553210
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
.|. ..+.+|+.+.|.|.+ +.|.+.+.|+++|..+..
T Consensus 103 ------------------~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------------------ 139 (363)
T 1wio_A 103 ------------------NSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------------------ 139 (363)
T ss_dssp ------------------SSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE------------------------
T ss_pred ------------------CCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc------------------------
Confidence 011 134569999999999 899999999998654311
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
....|.|.+++.+|+|.|+|.|.+..+....
T Consensus 140 ------------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~- 170 (363)
T 1wio_A 140 ------------------------------------------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEF- 170 (363)
T ss_dssp ------------------------------------------------ESSEEEECSBCGGGCEECEEEEEETTEEEEE-
T ss_pred ------------------------------------------------cceEEEEeeCChhcCCEEEEEEecCCCeEEE-
Confidence 1124888889999999999999987655444
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
.+.+.|..+|..+ ....+.+|+.+.|.|.+
T Consensus 171 -----------------------------------------~~~l~v~~~p~~~---------~~~~~~~G~~v~l~C~~ 200 (363)
T 1wio_A 171 -----------------------------------------KIDIVVLAFQKAS---------SIVYKKEGEQVEFSFPL 200 (363)
T ss_dssp -----------------------------------------CCEECEECCSCSE---------EEEEEETBCCEEEECCC
T ss_pred -----------------------------------------EEEEEEecCCCCC---------CceEEecCCEEEEEEEE
Confidence 3445555555432 24668889999999988
Q ss_pred cC-----cCCCeeEEeeCCeeecC--------CCcEEEEe----------cCCeEEEEEeeeccCcCeEEEEEEEcC--C
Q psy2776 533 FG-----FPRPEISWMKNGAEITD--------SKACRIFI----------DEETSTIAIYSVVRADTSTYTVTATNA--A 587 (803)
Q Consensus 533 ~g-----~p~~~v~W~~~g~~i~~--------~~~~~~~~----------~~~~~~L~i~~v~~~dsG~Y~C~a~n~--~ 587 (803)
.+ .|.|.+.|+++|..+.. +.++.+.. ......|.|.++..+|+|.|+|.|.|. .
T Consensus 201 ~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 280 (363)
T 1wio_A 201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT 280 (363)
T ss_dssp CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTT
T ss_pred ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhc
Confidence 87 78899999999988776 34444432 222458999999999999999999999 9
Q ss_pred CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCC
Q psy2776 588 GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667 (803)
Q Consensus 588 g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~ 667 (803)
|..+..+.|.|...
T Consensus 281 g~~~~~~~l~V~~v------------------------------------------------------------------ 294 (363)
T 1wio_A 281 GKLHQEVNLVVMRA------------------------------------------------------------------ 294 (363)
T ss_dssp CCEEEEEEEEEEEE------------------------------------------------------------------
T ss_pred CeEEEEEeEEEEEe------------------------------------------------------------------
Confidence 99888888887420
Q ss_pred CCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCc--eEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEE
Q psy2776 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS--IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745 (803)
Q Consensus 668 ~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
.|+++.|.|.+.|.|.|. +.|+++|..+.. ...|.|.++ +.+|+|.|+
T Consensus 295 ------------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-----------~~~l~i~~v-~~~d~G~Y~ 344 (363)
T 1wio_A 295 ------------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-----------SKREKAVWV-LNPEAGMWQ 344 (363)
T ss_dssp ------------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-----------EESSSEEEE-SSCCSEEEE
T ss_pred ------------------cCCCeeEEEEEccccCCCccEEEEeCCCceee-----------eeeeeeeee-ccccceeEE
Confidence 178899999999999998 999999988743 224678888 789999999
Q ss_pred EEEEccCcceeeeEEEEE
Q psy2776 746 VVATNELGSATHGARVTV 763 (803)
Q Consensus 746 C~a~N~~G~~~~~~~l~V 763 (803)
|.|+|. |....+..|.|
T Consensus 345 C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 345 CLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp EEECSS-SSCCEEEEEEE
T ss_pred EEEecC-CeEEEecceEe
Confidence 999964 66677777776
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=333.06 Aligned_cols=375 Identities=15% Similarity=0.178 Sum_probs=245.3
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCC----eeEEEEcC--eec-------------cceeE--EEecCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTP----DIKWYKDD--SLI-------------KGRNI--TYENNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p----~i~W~~~~--~~~-------------~~~~~--~~~~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|+.+.|.|.+.+.|.+ .+.|+|++ ..+ ...++ ...++...|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (438)
T 1qgc_4 4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE 83 (438)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence 4444667888999999999999987764 89999963 211 01122 223456789999999
Q ss_pred CCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 206 ESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
.+|+|.|+|.|.|..+.. ...+.|.|......
T Consensus 84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~----------------------------------------------- 116 (438)
T 1qgc_4 84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAA----------------------------------------------- 116 (438)
T ss_dssp GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBC-----------------------------------------------
T ss_pred CcCCeeEEEEEecCCCccccCceeEEecCCCCC-----------------------------------------------
Confidence 999999999999987743 33456666432100
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEEEcCcee
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
+.+....+.... .+|+.+.|.|.+ + .|.+ .+.|+|+|.++..+.....
T Consensus 117 ---------------------P~v~~~~~~~~~-~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~------- 167 (438)
T 1qgc_4 117 ---------------------PTVSIFPPSSEQ-LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW------- 167 (438)
T ss_dssp ---------------------CEEEEECCCHHH-HHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEE-------
T ss_pred ---------------------CEEEecCCChhh-ccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceecc-------
Confidence 001111111111 247789999999 5 6776 9999999998876421100
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
.......|.|.+ ...|.|.++..+|+|.|+|.
T Consensus 168 -----~~~~~~~~~~~~-------------------------------------------~~~L~i~~~~~~d~G~Y~C~ 199 (438)
T 1qgc_4 168 -----TDQDSKDSTYSM-------------------------------------------SSTLTLTKDEYERHNSYTCE 199 (438)
T ss_dssp -----ECCCTTTCCEEE-------------------------------------------EEEEEEEHHHHHTCCEEEEE
T ss_pred -----ccccCCCCcEEE-------------------------------------------EEEEEEeCcccCCCCeEEEE
Confidence 111122233322 23589999999999999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEe
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~ 521 (803)
|.|..+..... +.+ ....++. .+. ......+.
T Consensus 200 a~n~~~~~~~~-----------~~~-------------------------------~~~~~~~----~~~--~~~~~~v~ 231 (438)
T 1qgc_4 200 ATHKTSTSPIV-----------KSF-------------------------------NRNECEV----MLV--ESGGGLVK 231 (438)
T ss_dssp EEETTCSSCEE-----------EEE-------------------------------ETTC-CC----EEE--EECCEEEC
T ss_pred EEecccCCcee-----------ccc-------------------------------cccccee----EEe--cCCceEEe
Confidence 99987664321 111 1110000 011 11245688
Q ss_pred ecceeEEEEEEcCcC--CCeeEEeeC--Ceeec-----------------CCCcEEEEec--CCeEEEEEeeeccCcCeE
Q psy2776 522 VKSQWKVEVKYFGFP--RPEISWMKN--GAEIT-----------------DSKACRIFID--EETSTIAIYSVVRADTST 578 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~dsG~ 578 (803)
+|+.+.|.|.+.|.| .+.+.|+|+ |..+. ...++.+..+ .....|.|.++..+|+|.
T Consensus 232 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~ 311 (438)
T 1qgc_4 232 PGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAM 311 (438)
T ss_dssp TTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCE
T ss_pred cCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEE
Confidence 999999999999998 679999997 54332 1245555443 345799999999999999
Q ss_pred EEEEEEcCCC-----CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 579 YTVTATNAAG-----STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 579 Y~C~a~n~~g-----~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
|+|.|.|..+ .......|.|...
T Consensus 312 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~---------------------------------------------------- 339 (438)
T 1qgc_4 312 YYCVRREDGGDEGFAYWGQGTVVTVSAA---------------------------------------------------- 339 (438)
T ss_dssp EEEEECCSSSCCCCCSBCCCEEEEECSS----------------------------------------------------
T ss_pred EEEEEEccCCCccceeeCCCEEEEEecC----------------------------------------------------
Confidence 9999999544 2223345555321
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeCc---eE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGE---NI 728 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~---~~ 728 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .|.|+++|.++.......+...+. .+
T Consensus 340 ---------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s 404 (438)
T 1qgc_4 340 ---------------KTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS 404 (438)
T ss_dssp ---------------CCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEE
T ss_pred ---------------CCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEE
Confidence 1124555444434456789999999999998 888 999999998875321111222222 23
Q ss_pred EEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 729 ILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 729 ~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
.|.|.++ ..+| |.|+|.|.|.+|.......|.
T Consensus 405 ~L~i~~~-~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 405 SVTVPSS-TWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp EEEEEEE-HHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred EEEEehh-hcCC-ceEEEEEEeCCCCcceeeecC
Confidence 6899988 5678 999999999999977655543
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.21 Aligned_cols=364 Identities=20% Similarity=0.263 Sum_probs=253.7
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEecc-----ccCCeEEEEEEEEccCccC
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL-----TTKHEYMFRVAAVNAIGTG 125 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~c~a~~~~g~~ 125 (803)
.+....|..++|.|......+ .+...|............-......++.|.|.++ +.+|+|.|+|.+.+..+..
T Consensus 30 ~~~v~~G~~v~L~C~~~~~~p-~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~ 108 (403)
T 3laf_A 30 DAVTMRGGNVLLNCSAESDRG-VPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS 108 (403)
T ss_dssp CEEECTTCCEEECCEEECTTC-CCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCE
T ss_pred ceEEecCCcEEEEEEcCCCCC-CceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCcc
Confidence 355668999999998743211 2222222211111100000111123566788777 6789999999998654332
Q ss_pred CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEe
Q psy2776 126 PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVV 202 (803)
Q Consensus 126 ~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~ 202 (803)
..+... .+.+ ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ...........|.|.
T Consensus 109 ~~s~~~-~l~v-----~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~ 182 (403)
T 3laf_A 109 IISRTA-KVMV-----AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQIS 182 (403)
T ss_dssp EECCCE-EEEE-----CCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEEC
T ss_pred EEEEEE-EEEe-----cCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEc
Confidence 222222 2333 2366777777888999999999999999999999999999987632 222222334579999
Q ss_pred cCCCCcceEEEEEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 203 NCSESSEGRYTCKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+++.+|+|.|+|.+.|..+... ..+.+.|...+....
T Consensus 183 ~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~------------------------------------------ 220 (403)
T 3laf_A 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR------------------------------------------ 220 (403)
T ss_dssp SCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCE------------------------------------------
T ss_pred ccccccCEEEEEEEEcCCCceeccceeEEEecCCCccc------------------------------------------
Confidence 9999999999999999887643 456777765531110
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCce
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQ 360 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~ 360 (803)
...+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..........
T Consensus 221 ------------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~---- 272 (403)
T 3laf_A 221 ------------------------QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL---- 272 (403)
T ss_dssp ------------------------EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE----
T ss_pred ------------------------CceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC----
Confidence 0011112333445679999999999 88999999999998876433221111
Q ss_pred eEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEE
Q psy2776 361 RKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 440 (803)
Q Consensus 361 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 440 (803)
+...|.|.+++.+|+|.|+|
T Consensus 273 ------------------------------------------------------------~~~~L~i~~~~~~d~G~Y~C 292 (403)
T 3laf_A 273 ------------------------------------------------------------GGSNLLISNVTDDDSGTYTC 292 (403)
T ss_dssp ------------------------------------------------------------TTTEEEECSCCGGGCEEEEE
T ss_pred ------------------------------------------------------------CccEEEEeCCCHHHCEEEEE
Confidence 11248899999999999999
Q ss_pred EeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEE
Q psy2776 441 KATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520 (803)
Q Consensus 441 ~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v 520 (803)
.|.|..|.... .+.|.|..+|.+. ..+....+
T Consensus 293 ~a~n~~g~~~~------------------------------------------~~~l~V~~~p~~~------~~~~~~~~ 324 (403)
T 3laf_A 293 VVTYKNENISA------------------------------------------SAELTVLVPPWFL------NHPSNLYA 324 (403)
T ss_dssp EEEETTEEEEE------------------------------------------EEEEEEEEEEEEE------ECCCCEEC
T ss_pred EEEcCCCceEE------------------------------------------EEEEEEECCCcEe------ecCcceEE
Confidence 99999887665 3444454444321 11234667
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.+..+. .++.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 325 ~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 325 YESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp CTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE---TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe---cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence 88999999999999999999999999999877666554 245799999999999999999999999999999999987
Q ss_pred eE
Q psy2776 601 YI 602 (803)
Q Consensus 601 ~p 602 (803)
+|
T Consensus 402 P~ 403 (403)
T 3laf_A 402 PA 403 (403)
T ss_dssp C-
T ss_pred CC
Confidence 64
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=297.66 Aligned_cols=277 Identities=29% Similarity=0.441 Sum_probs=226.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|+|++..+... .+....+...|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 36788888889999999999999999999999999999999887632 344455678999999999999999999999
Q ss_pred CCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
..|....++.|.|..+|.
T Consensus 83 ~~g~~~~~~~l~V~~~p~-------------------------------------------------------------- 100 (284)
T 2rik_A 83 VAGKDSCSAQLGVQEPPR-------------------------------------------------------------- 100 (284)
T ss_dssp TTEEEEEEEEEEEECCCE--------------------------------------------------------------
T ss_pred CCceEEEEEEEEccCCCc--------------------------------------------------------------
Confidence 999887788888876531
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
+....+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......+..
T Consensus 101 ---------~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~--------------------- 150 (284)
T 2rik_A 101 ---------FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF--------------------- 150 (284)
T ss_dssp ---------EEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEE---------------------
T ss_pred ---------ccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEE---------------------
Confidence 11122233456679999999999 89999999999999887654433322
Q ss_pred EEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCC
Q psy2776 378 VLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457 (803)
Q Consensus 378 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~ 457 (803)
..+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 151 -----------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~------ 183 (284)
T 2rik_A 151 -----------------------------------------VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS------ 183 (284)
T ss_dssp -----------------------------------------ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE------
T ss_pred -----------------------------------------cCCEEEEEECCCCcccCEEEEEEEEcCCCceeE------
Confidence 223456888899999999999999999887665
Q ss_pred CCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC
Q psy2776 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR 537 (803)
Q Consensus 458 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~ 537 (803)
.+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.
T Consensus 184 ------------------------------------~~~l~V~~~p~~~~~------~~~~~~~~g~~v~l~C~~~g~p~ 221 (284)
T 2rik_A 184 ------------------------------------STSLKVKEPPVFRKK------PHPVETLKGADVHLECELQGTPP 221 (284)
T ss_dssp ------------------------------------EEEEEEECCCBCCSC------CCCEEECTTCCEEEEEECBSSSC
T ss_pred ------------------------------------EEEEEEecCCcceeC------CCcceecCCCeEEEEEEEEecCC
Confidence 455566666654321 12466789999999999999999
Q ss_pred CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 538 ~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.+.|+++|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 222 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 222 FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp CEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99999999999998888888777777899999999999999999999999999999999885
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=321.47 Aligned_cols=389 Identities=12% Similarity=0.116 Sum_probs=215.7
Q ss_pred ccCCcEEEEEEEEcCCCCce-e---eEE---------EEEec-CCCCC--CC-ceEEEecCCeEEEEeeCCCCCCCCCeE
Q psy2776 14 EDKDLGDYTISLSNALGQAS-A---TTK---------VTLLS-APGAP--DT-PEIVGRSDSSVTLHWRPPQDDGHSPVT 76 (803)
Q Consensus 14 ~~~D~G~Y~C~a~n~~g~~~-~---~~~---------l~V~~-~p~~p--~~-~~~~~~~~~~v~l~c~~p~~~g~~~~~ 76 (803)
...|.|.|+|.+.+..+..+ . ..+ |.... ++.+. .. ..+...+|+.+.|.|..... ..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~--P~p~i 80 (423)
T 3qs7_E 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAP--GNISC 80 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEECSCC--SSCEE
T ss_pred ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcC--CCCeE
Confidence 45799999999998755431 1 112 11111 11111 11 14556689999999997542 22322
Q ss_pred EEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeee
Q psy2776 77 GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA 156 (803)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v 156 (803)
.|......................|.|.+++.+|+|.|+|.|.|..|... ... .+.+. .+|.+. ......+
T Consensus 81 ~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~--~~~-~l~V~-----~~p~~~-~~~p~~~ 151 (423)
T 3qs7_E 81 LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT--ILF-TVSIR-----NTLLYT-LRRPYFR 151 (423)
T ss_dssp EEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEE--EEE-EEEEC----------C-EEEEEEE
T ss_pred EEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEE--EEE-EEEEe-----cCcccc-ccCCcEe
Confidence 33221111111101110111134699999999999999999999877532 222 22232 223322 1122345
Q ss_pred ecCCcEEEEEEECccCCCeeEEEEcCeeccceeEE----EecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEEEE
Q psy2776 157 GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNIT----YENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLV 231 (803)
Q Consensus 157 ~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V 231 (803)
..|+.+.|.|.+.|+|.|.|.|++++..+...... .......| ..+|+|.|+|.|.|..|.... .+.|.|
T Consensus 152 ~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~d~G~Y~C~A~N~~G~~~~~~~~l~V 226 (423)
T 3qs7_E 152 KMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-----HELFGTDIRCCARNELGRECTRLFTIDL 226 (423)
T ss_dssp ECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEE-----CCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred ccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEE-----ecccCeEEEEEEEcCCCCcceeeEEEEE
Confidence 56888999999999999999999988754321100 11111122 688999999999999987654 245555
Q ss_pred eeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcccccccc
Q psy2776 232 QGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK 311 (803)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (803)
...+..
T Consensus 227 ~~~p~~-------------------------------------------------------------------------- 232 (423)
T 3qs7_E 227 NQTPQT-------------------------------------------------------------------------- 232 (423)
T ss_dssp SSCCCS--------------------------------------------------------------------------
T ss_pred ecCCcc--------------------------------------------------------------------------
Confidence 443210
Q ss_pred CCceeeeccccceeEEEEe-c-CCceeeEEeecCeeccccceeEEEEc-CceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-S-SPDIQVKWLKKGKEIKESARHIITSR-GTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~-~p~~~i~W~~~g~~l~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
.+....+.+|+.+.|.|.+ + .|.+.+.|+|+|..+........... +.
T Consensus 233 ~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~----------------------------- 283 (423)
T 3qs7_E 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN----------------------------- 283 (423)
T ss_dssp STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETT-----------------------------
T ss_pred CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCC-----------------------------
Confidence 1123456679999999999 6 77899999999988865432211100 00
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
. .......|.|.+++.+|+|.|+|.|.|. ...
T Consensus 284 --------------------------~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~----------------- 315 (423)
T 3qs7_E 284 --------------------------R--TMIRILFAFVSSVARNDTGYYTCSSSKH---PSQ----------------- 315 (423)
T ss_dssp --------------------------T--EEEEEEEEEESSCCTTTCEEEEEEETTE---EEE-----------------
T ss_pred --------------------------c--eeEEEEEEEEeecCHHHCEEEEEEEecC---CCc-----------------
Confidence 0 0012245999999999999999999997 222
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.+... .......+.+|+.+.|.|.+.|.|.|.++|+|+|..
T Consensus 316 -------------------------~~~L~V~~~p~i~~~----~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~ 366 (423)
T 3qs7_E 316 -------------------------SALVTIVEKGFINAT----NSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366 (423)
T ss_dssp -------------------------EEEEEEESSCEEEEC-------CEECCCTTCCCCEEEEEEEESCCEEEEEETTEE
T ss_pred -------------------------eEEEEEEeCCcceEc----CCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEE
Confidence 344555555432111 011245678899999999999999999999999999
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
|..+.+. ..+...+.+..+..+|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 367 l~~~~~~----~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p 416 (423)
T 3qs7_E 367 FPCEQKG----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416 (423)
T ss_dssp EECBCCB----CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred CCCcccc----ccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence 8764310 0011223335667799999999999999999999999998876
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=314.02 Aligned_cols=355 Identities=17% Similarity=0.232 Sum_probs=237.8
Q ss_pred ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEecc-ccCCeEEEEEEEEccCccCCCcceeeE
Q psy2776 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL-TTKHEYMFRVAAVNAIGTGPASHNTRY 133 (803)
Q Consensus 55 ~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~c~a~~~~g~~~~s~~~~~ 133 (803)
.+|..+.|.|.+... ..+...|.......... ...+....++.|.|.+. +.+|+|.|+|.|.|..|...... ..+
T Consensus 21 ~eg~~v~L~C~~~g~--P~p~i~W~k~g~~l~~~-~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~-~~l 96 (384)
T 3kld_A 21 SEEKKVKLSCEVKGN--PKPHIRWKLNGTDVDIG-MDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE-AKL 96 (384)
T ss_dssp CSCSEEEECCEEEEE--SCCEEEEEETTEECCC-----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCC-EEE
T ss_pred CCCCeEEEEeEecCC--CCCEEEEEECCEECcCC-CCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecc-eEE
Confidence 468999999986311 12322333222211111 01112223566788776 78999999999999988632221 122
Q ss_pred EEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCCCCcceE
Q psy2776 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCSESSEGR 211 (803)
Q Consensus 134 ~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~ 211 (803)
.....+ +..........+.+|+.+.|.|... +.|.+.+.|++++..+.. .+.........|.|.+++.+|+|.
T Consensus 97 ~v~~~~-----~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 171 (384)
T 3kld_A 97 QFAYLE-----NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171 (384)
T ss_dssp EEEEEC-----CCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEE
T ss_pred EEeccc-----ccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCce
Confidence 221111 1111123456788999999999765 467789999999987643 222333345679999999999999
Q ss_pred EEEEEEcCCcCeeeE---EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccc
Q psy2776 212 YTCKATNEAGTAETS---CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSD 288 (803)
Q Consensus 212 Y~C~a~n~~g~~~~s---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (803)
|+|.|.|..+..... ..+.+......
T Consensus 172 Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~--------------------------------------------------- 200 (384)
T 3kld_A 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVM--------------------------------------------------- 200 (384)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEEEEEEC---------------------------------------------------
T ss_pred EEEEEecccccceeeCCceEEEEccCCcc---------------------------------------------------
Confidence 999999988765321 12222211000
Q ss_pred cccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeec-CeeccccceeEEEEcCceeEEEEe
Q psy2776 289 LESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKK-GKEIKESARHIITSRGTQRKLVIK 366 (803)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~-g~~l~~~~~~~~~~~~~~~~l~i~ 366 (803)
....+.+....+....+.+|+.+.|.|.+ |.|.+.+.|+|+ +.++......
T Consensus 201 -------------~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~-------------- 253 (384)
T 3kld_A 201 -------------GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR-------------- 253 (384)
T ss_dssp -------------CCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEE--------------
T ss_pred -------------cccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccccee--------------
Confidence 00011122223445556779999999999 899999999995 5455432110
Q ss_pred ecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 367 RVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 367 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
......|.|.+++.+|+|.|+|.|.|..
T Consensus 254 ----------------------------------------------------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 281 (384)
T 3kld_A 254 ----------------------------------------------------HKSNGILEIPNFQQEDAGSYECVAENSR 281 (384)
T ss_dssp ----------------------------------------------------CTTSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred ----------------------------------------------------cCCCcEEEECCCChhhCEEEEEEEEcCC
Confidence 0112358899999999999999999999
Q ss_pred eeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeeccee
Q psy2776 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQW 526 (803)
Q Consensus 447 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v 526 (803)
|.... ...|.|..+|.+.. .+....+.+|+.+
T Consensus 282 G~~~~------------------------------------------~~~l~v~~~P~~~~------~~~~~~v~~g~~v 313 (384)
T 3kld_A 282 GKNVA------------------------------------------KGQLTFYAQPNWVQ------IINDIHVAMEESV 313 (384)
T ss_dssp EEEEE------------------------------------------EEEEEEEEEEEEEE------CCCCEEECTTCCE
T ss_pred CeEEE------------------------------------------EEEEEEecCCcccc------CCCceEecCCCCE
Confidence 98776 33444444443211 1235678899999
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.|.|.|.++|+|+|..+....++.+. +.+|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 314 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 314 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp EEECEEEEESCCEEEEEETTEECCCBTTEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEEeECCccCCCeEEEEECCEECCCCccEEEe----CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence 99999999999999999999999877666543 24899999999999999999999999999999999864
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=309.14 Aligned_cols=378 Identities=18% Similarity=0.237 Sum_probs=244.5
Q ss_pred EecCCCCCCCc-eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEE
Q psy2776 40 LLSAPGAPDTP-EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118 (803)
Q Consensus 40 V~~~p~~p~~~-~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a 118 (803)
|..+|.....| .+....|..++|.|..... ...+...|...................+..|.|.+++.+|.|.|+|.+
T Consensus 3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (395)
T 1bih_A 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGN-DQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFA 81 (395)
T ss_dssp --CCCEECCCCSEEEEETTSCEEECCCEESC-CSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEE
T ss_pred cCCCCEeecCCCceEEeCCCEEEEEEEEecC-CCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEE
Confidence 44455433333 4556789999999987431 112222222221111111001112224678999999999999999999
Q ss_pred EccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEE-CccCCCeeEEEEcCe---ecc-----cee
Q psy2776 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDS---LIK-----GRN 189 (803)
Q Consensus 119 ~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~---~~~-----~~~ 189 (803)
.|..|..... ...+..... ..|.+ .+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++. ... ..+
T Consensus 82 ~n~~g~~~s~-~~~l~v~~~----~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 154 (395)
T 1bih_A 82 ETPAGVASSR-VISFRKTYL----IASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154 (395)
T ss_dssp EETTEEEECC-CEEEEEEEE----ECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTT
T ss_pred EeCCCeEEeE-EEEEEEEEe----ecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccccc
Confidence 9987753211 111111111 11222 2345667899999999996 689999999999862 111 122
Q ss_pred EEEecCeeEEEEecCCCCcce---EEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcce
Q psy2776 190 ITYENNVARFTVVNCSESSEG---RYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDI 266 (803)
Q Consensus 190 ~~~~~~~~~L~i~~v~~~d~G---~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (803)
+... ....|.|.+++.+|+| .|+|.|.|..|....................
T Consensus 155 ~~~~-~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~------------------------- 208 (395)
T 1bih_A 155 ITAG-PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSG------------------------- 208 (395)
T ss_dssp EEEC-TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSC-------------------------
T ss_pred EEEc-CCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccccccc-------------------------
Confidence 3332 2347999999999999 9999999999876544332221110000000
Q ss_pred eEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCee
Q psy2776 267 GVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKE 345 (803)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~ 345 (803)
......+.+ .+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..
T Consensus 209 ---------------------------------~~~~~~p~~---~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~ 252 (395)
T 1bih_A 209 ---------------------------------YKGEPVPQY---VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252 (395)
T ss_dssp ---------------------------------CCCCCEEEE---ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEE
T ss_pred ---------------------------------ccCCcCcee---cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEE
Confidence 000011111 1234456779999999999 899999999999988
Q ss_pred ccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEE
Q psy2776 346 IKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARF 425 (803)
Q Consensus 346 l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 425 (803)
+.......+.... ..+...|
T Consensus 253 ~~~~~~~~~~~~~------------------------------------------------------------~~~~~~L 272 (395)
T 1bih_A 253 VNGNPEDRITRHN------------------------------------------------------------RTSGKRL 272 (395)
T ss_dssp CCCCTTSSEESCS------------------------------------------------------------SSTTSEE
T ss_pred cCCCCceeEEEEe------------------------------------------------------------cCCCceE
Confidence 8653221111000 0122358
Q ss_pred EEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCC
Q psy2776 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQ 505 (803)
Q Consensus 426 ~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~ 505 (803)
.|.+++.+|+|.|+|.|.|..|..... .+.|.|..+|.+
T Consensus 273 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~-----------------------------------------~~~l~V~~~P~~ 311 (395)
T 1bih_A 273 LFKTTLPEDEGVYTCEVDNGVGKPQKH-----------------------------------------SLKLTVVSAPKY 311 (395)
T ss_dssp EESSCCGGGCEEEEEEECCSSSSCEEE-----------------------------------------EEEEEEEEEEEE
T ss_pred EEccCChhhCEEEEEEEEeCCCCceEE-----------------------------------------EEEEEEEcCCcc
Confidence 899999999999999999988875541 344445555432
Q ss_pred ccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 506 PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 506 ~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
.. .+.....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+ ++.+. . ..|.|.++..+|+|.|+|.|.|
T Consensus 312 ~~-----~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--~--~~L~i~~~~~~d~G~Y~C~a~N 381 (395)
T 1bih_A 312 EQ-----KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--D--SGLVIKGVKNGDKGYYGCRATN 381 (395)
T ss_dssp EE-----CCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--T--TEEEESSCCSTTCEEEEEEEEE
T ss_pred cc-----CCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--C--CEEEEeeCCcccCEEEEEEEEc
Confidence 11 1111267889999999999999999999999999998765 44432 2 2899999999999999999999
Q ss_pred CCCCeEEEEEEEE
Q psy2776 586 AAGSTSLDLSLQV 598 (803)
Q Consensus 586 ~~g~~s~s~~l~V 598 (803)
..|....++.|.|
T Consensus 382 ~~G~~~~~~~l~V 394 (395)
T 1bih_A 382 EHGDKYFETLVQV 394 (395)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cCCCceEEEEEEE
Confidence 9999999999887
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=303.87 Aligned_cols=351 Identities=17% Similarity=0.214 Sum_probs=239.0
Q ss_pred ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEecccc-CCeEEEEEEEEccCccCCCcceeeE
Q psy2776 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTT-KHEYMFRVAAVNAIGTGPASHNTRY 133 (803)
Q Consensus 55 ~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~a~~~~g~~~~s~~~~~ 133 (803)
..|..++|.|..... ..+...|.......... ...+....++.|.|.++.. +|+|.|+|.+.|..|.... ....+
T Consensus 20 ~~g~~v~l~C~~~g~--p~~~v~W~k~g~~~~~~-~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s-~~~~l 95 (382)
T 1cs6_A 20 SAEEKVTLTCRARAN--PPATYRWKMNGTELKMG-PDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVS-REASL 95 (382)
T ss_dssp CSCCEEEECCEEEEE--SCCEEEEEETTEECCCS-TTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEEC-CCEEE
T ss_pred CCCCcEEEEEEecCC--CCCEEEEEECCEECCcC-CCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEe-cceEE
Confidence 468999999986311 11222222211111100 0001112356899999986 9999999999998775321 11222
Q ss_pred EEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEE-CccCCCeeEEEEcCeecc---ceeEEEecCeeEEEEecCCCCcc
Q psy2776 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 134 ~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~ 209 (803)
.+...+ +.....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+. ..+.........|.|.+++.+|+
T Consensus 96 ~v~~~~-----~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 170 (382)
T 1cs6_A 96 RFGFLQ-----EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170 (382)
T ss_dssp EEEEEC-----CCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGC
T ss_pred Eeeccc-----cccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccC
Confidence 221111 111122456788899999999996 467889999999987542 22333334456899999999999
Q ss_pred eEEEEEEEcCCcCeeeE-----EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 210 GRYTCKATNEAGTAETS-----CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s-----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
|.|+|.+.|..|..... +.|.|.....
T Consensus 171 G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~------------------------------------------------ 202 (382)
T 1cs6_A 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDA------------------------------------------------ 202 (382)
T ss_dssp EEEEEEEEEEETTEEEEEECCCEEEEEESCCC------------------------------------------------
T ss_pred eeEEEEEEEccccccceeEccceeeccchhhc------------------------------------------------
Confidence 99999999987643332 2333322100
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEE
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l 363 (803)
....+.+....+....+.+|+.+.|.|.+ +.|.+.+.|++++..+....
T Consensus 203 -----------------~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~------------- 252 (382)
T 1cs6_A 203 -----------------RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------------- 252 (382)
T ss_dssp -----------------CCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC-------------
T ss_pred -----------------ccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEE-------------
Confidence 00011222233445566789999999999 89999999999876654300
Q ss_pred EEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 443 (803)
......|.|.+++.+|+|.|+|.|.
T Consensus 253 -------------------------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~ 277 (382)
T 1cs6_A 253 -------------------------------------------------------LSSEPLLHIQNVDFEDEGTYECEAE 277 (382)
T ss_dssp -------------------------------------------------------SBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred -------------------------------------------------------ecCCcEEEEccCChhhCEEEEEEEE
Confidence 0122358888999999999999999
Q ss_pred CCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeec
Q psy2776 444 NEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523 (803)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g 523 (803)
|..|.... .+.|.|..+|.+.. .+....+.+|
T Consensus 278 n~~g~~~~------------------------------------------~~~l~V~~~p~~~~------~~~~~~~~~g 309 (382)
T 1cs6_A 278 NIKGRDTY------------------------------------------QGRIIIHAQPDWLD------VITDTEADIG 309 (382)
T ss_dssp ETTEEEEE------------------------------------------EEEEEEEEEEEEEE------CCCCEEEETT
T ss_pred cCCCeEEE------------------------------------------EEEEEEecCCCccc------CCCccEEcCC
Confidence 99888655 33444444443211 1234678899
Q ss_pred ceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 524 ~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+. +..|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 310 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 310 SDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp CCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE----CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99999999999999999999999999887766553 2489999999999999999999999999999999885
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=289.06 Aligned_cols=281 Identities=23% Similarity=0.320 Sum_probs=195.6
Q ss_pred ccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
+.|... |....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+............
T Consensus 7 P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~-------------------------- 59 (304)
T 2yd9_A 7 PRFIKE-PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDE-------------------------- 59 (304)
T ss_dssp CEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETT--------------------------
T ss_pred Ceeeec-CCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecC--------------------------
Confidence 344443 445566789999999999 8999999999999887543221111010
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccC-CCceeEEEEeeCCceeeeeecccCCCCceeE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSE-SSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~ 463 (803)
+....|.|.+++. +|+|.|+|.|.|..|....
T Consensus 60 -----------------------------------~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~------------ 92 (304)
T 2yd9_A 60 -----------------------------------SAGAVLRIQPLRTPRDENVYECVAQNSVGEITV------------ 92 (304)
T ss_dssp -----------------------------------TTEEEEEECSCCTTTTCSEEEEEEECSSCEECC------------
T ss_pred -----------------------------------CCceEEEEecccccCCCeEEEEEEECCCCeEEE------------
Confidence 1235688999997 9999999999998887544
Q ss_pred EeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCcc-ceeeeccccceEEeecceeEEEEEEcCcCCCeeEE
Q psy2776 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA-IKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542 (803)
Q Consensus 464 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W 542 (803)
.+.|.|..++..+. ...+...+....+.+|+.+.|.|.+.|.|.+.+.|
T Consensus 93 ------------------------------~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W 142 (304)
T 2yd9_A 93 ------------------------------HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142 (304)
T ss_dssp ------------------------------EEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEE
T ss_pred ------------------------------EEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEE
Confidence 33334433322110 01111222356788999999999999999999999
Q ss_pred eeCCeeecCCC-cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE-EEEEEeeeEeEeeecccccEEEeeeeC
Q psy2776 543 MKNGAEITDSK-ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD-LSLQVLGYIIQQQEKNSLKFTKVATLD 620 (803)
Q Consensus 543 ~~~g~~i~~~~-~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s-~~l~V~~~p~~~~~~~~~~w~~~~~~~ 620 (803)
+++|..+.... ..++... ....|.|.++..+|+|.|+|.|.|..|..... ..|.|...
T Consensus 143 ~k~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~------------------- 202 (304)
T 2yd9_A 143 FKDFLPVDPSASNGRIKQL-RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ------------------- 202 (304)
T ss_dssp EETTEECCGGGGTTSEEEC-TTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-------------------
T ss_pred EECCEECcCCCCcceEEeC-CCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee-------------------
Confidence 99999887542 1122222 23489999999999999999999998876532 44444321
Q ss_pred CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC
Q psy2776 621 PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 700 (803)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p 700 (803)
..+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus 203 -------------------------------------------------~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p 233 (304)
T 2yd9_A 203 -------------------------------------------------NVAPRFSILPMSHEIMPGGNVNITCVAVGSP 233 (304)
T ss_dssp -------------------------------------------------CEEEEEEECCCCBCCCTTCCEEEEEEEEEES
T ss_pred -------------------------------------------------ccCCcEEecCCceEEcCCCeEEEEEEEeeeC
Confidence 0156666666677889999999999999999
Q ss_pred CCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 701 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 701 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
.|.+.|+++|..+..+.++ ......|.|.++ +|+|.|+|.|.|.+|..+.++.|.|+..
T Consensus 234 ~p~v~W~~~~~~l~~~~~~----~~~~~~L~i~~~---~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 234 MPYVKWMQGAEDLTPEDDM----PVGRNVLELTDV---KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp CCEEEEEETTEECSCSSSC----CBSEEEEEECSC---CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred CCEEEEEECCEECCCcccc----cCCcEEEEEccc---ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 9999999999999776543 234557888765 5999999999999999999999999653
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=293.35 Aligned_cols=295 Identities=18% Similarity=0.292 Sum_probs=213.8
Q ss_pred cccccccCCceeeeccccceeEEEEe-cC-CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 305 AVEFLSKLPSVTLVPHLGDATFQVEL-SS-PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 305 ~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
.+.|.... ...+.+|+.+.|.|.+ +. |.+.+.|+|+|..+..+.++.+.
T Consensus 7 ~P~~~~~~--~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--------------------------- 57 (317)
T 2y25_A 7 GPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--------------------------- 57 (317)
T ss_dssp CCEEEEEE--EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------------------------------
T ss_pred CCcEeeee--eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE---------------------------
Confidence 34454332 3667789999999999 55 78999999999888754433221
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
.+...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 58 -------------------------------------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~---------- 90 (317)
T 2y25_A 58 -------------------------------------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR---------- 90 (317)
T ss_dssp --------------------------------------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEE----------
T ss_pred -------------------------------------CCeEEEEEccCCcccCeEEEEEEECCCCcEEEE----------
Confidence 233568899999999999999999988876552
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC--------
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-------- 534 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-------- 534 (803)
+.|.+..+|.+.. ......+..|+.+.|.|.+.+
T Consensus 91 --------------------------------~~l~v~~~~~~~~------~~~~~~~~~g~~~~l~c~~~~~~l~c~~~ 132 (317)
T 2y25_A 91 --------------------------------LKLVDEAFKELMM------EVCKKIALSATDLKIQSTAEGIQLYSFVT 132 (317)
T ss_dssp --------------------------------ECCSTHHHHHHHH------HHHHHHHTCBCCCEEEECSSEEEEEEEBS
T ss_pred --------------------------------EEEEEecCccccc------cCCceecccCCCeEEEeeccccEEEEEec
Confidence 2222222221100 001223345666666666555
Q ss_pred --cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeeccccc
Q psy2776 535 --FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLK 612 (803)
Q Consensus 535 --~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~ 612 (803)
.|.+.+.|+++|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|....++.|.|......
T Consensus 133 ~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~-------- 204 (317)
T 2y25_A 133 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA-------- 204 (317)
T ss_dssp SCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHH--------
T ss_pred cCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeecccc--------
Confidence 6889999999999998888888877777789999999999999999999999998888888776431100
Q ss_pred EEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEE
Q psy2776 613 FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIR 691 (803)
Q Consensus 613 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~ 691 (803)
.......... .. ....+|.+... +....+.+|+.+.
T Consensus 205 -----------------------------------------~~~~~~~~~~-~~-~~~~~p~~~~~~~~~~~v~~g~~~~ 241 (317)
T 2y25_A 205 -----------------------------------------YAEFQRLKQA-AI-AEKNRARVLGGLPDVVTIQEGKALN 241 (317)
T ss_dssp -----------------------------------------HHHHHHHHHH-HH-HTTTSCEEEEBCCSEEEEETTSBBC
T ss_pred -----------------------------------------chhhcccCCc-cc-CcCCCCcccccCCccEEEEcCCEEE
Confidence 0000000000 00 01124445444 4457899999999
Q ss_pred EEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 692 L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|.|.+.|.|.|.+.|+++|..+..+.++.+..+ +....|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus 242 l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV-STADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp EEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSC-CSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCC-CHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 999999999999999999999998888877766 77789999999 79999999999999999999999999864
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=306.14 Aligned_cols=361 Identities=19% Similarity=0.244 Sum_probs=238.3
Q ss_pred EEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCce-eEEEeeeeeeEEEEe----ccccCCeEEEEEEEEccCccCCC
Q psy2776 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM-VWNKIETTSTTYEVT----KLTTKHEYMFRVAAVNAIGTGPA 127 (803)
Q Consensus 53 ~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~----~~~~~d~g~y~c~a~~~~g~~~~ 127 (803)
....|..++|.|..... ..+...|........... ........++.|.|. +++.+|+|.|+|.+.|..|...
T Consensus 28 ~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~- 104 (404)
T 3p3y_A 28 IVDPRDNILIECEAKGN--PAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL- 104 (404)
T ss_dssp EECSSSCCCCCEEECCS--SCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEE-
T ss_pred EEcCCCCEEEEEEecCC--CCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEe-
Confidence 45579999999996322 122222222111100000 000111134556664 7889999999999999877531
Q ss_pred cceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEE-CccCCCeeEEEEcCeec-cceeEEEecCeeEEEEecCC
Q psy2776 128 SHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLI-KGRNITYENNVARFTVVNCS 205 (803)
Q Consensus 128 s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~~~-~~~~~~~~~~~~~L~i~~v~ 205 (803)
+... .+.+..+ +...........+.+|+.+.|.|.+ .+.|.+.+.|++++... .............|.|.++.
T Consensus 105 s~~~-~l~V~~~----p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~ 179 (404)
T 3p3y_A 105 SNRI-RLQVSKS----PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVM 179 (404)
T ss_dssp EEEE-EEEECCC----CCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCC
T ss_pred eeeE-EEEEecc----CccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeee
Confidence 1222 2233221 1112223455788999999999999 78899999999987433 22222222334579999999
Q ss_pred CCc-ceEEEEEEEcCCcCeeeE---EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 206 ESS-EGRYTCKATNEAGTAETS---CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 206 ~~d-~G~Y~C~a~n~~g~~~~s---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
.+| +|.|+|.+.|..+..... ..+.|...+...
T Consensus 180 ~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~------------------------------------------- 216 (404)
T 3p3y_A 180 LQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA------------------------------------------- 216 (404)
T ss_dssp SGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCC-------------------------------------------
T ss_pred eccCCcceEEEEEeccccceeccCceeEEEeccCCcc-------------------------------------------
Confidence 999 599999999988764332 344444321000
Q ss_pred eeccccccccceeeeeeccCCCcccccccc--CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcC
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSK--LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRG 358 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~ 358 (803)
...+.+... .+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......
T Consensus 217 ---------------------~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~----- 270 (404)
T 3p3y_A 217 ---------------------ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF----- 270 (404)
T ss_dssp ---------------------CCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEE-----
T ss_pred ---------------------ccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccc-----
Confidence 000111111 1234456779999999999 88999999999998886543211
Q ss_pred ceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeE
Q psy2776 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438 (803)
Q Consensus 359 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 438 (803)
......|.|.+++.+|+|.|
T Consensus 271 ------------------------------------------------------------~~~~~~L~i~~~~~~d~G~Y 290 (404)
T 3p3y_A 271 ------------------------------------------------------------ENFNKALRITNVSEEDSGEY 290 (404)
T ss_dssp ------------------------------------------------------------EGGGTEEEESSCCGGGCEEE
T ss_pred ------------------------------------------------------------cccCceEEEccCCHhHCEEE
Confidence 11123588999999999999
Q ss_pred EEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccce
Q psy2776 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518 (803)
Q Consensus 439 ~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~ 518 (803)
+|.|.|..|.... .+.|.|..+|.+. ..+...
T Consensus 291 ~C~a~n~~g~~~~------------------------------------------~~~l~V~~~p~~~------~~~~~~ 322 (404)
T 3p3y_A 291 FCLASNKMGSIRH------------------------------------------TISVRVKAAPYWL------DEPKNL 322 (404)
T ss_dssp EEEEECSSCEEEE------------------------------------------EEEEEEEEEEEEE------ECCCCE
T ss_pred EEEEEeCCCcEEE------------------------------------------EEEEEEeCCCeee------ccCCcc
Confidence 9999999887665 3444454444321 112356
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc-EEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA-CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~-~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
.+.+|+.+.|.|.+.|.|.|.+.|+++|..+..... ..... .+..|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 323 ~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 400 (404)
T 3p3y_A 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV--AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400 (404)
T ss_dssp EECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE--ETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEE
T ss_pred eeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe--cCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEE
Confidence 788999999999999999999999999999876531 11111 134899999999999999999999999999999998
Q ss_pred Eee
Q psy2776 598 VLG 600 (803)
Q Consensus 598 V~~ 600 (803)
|.+
T Consensus 401 V~d 403 (404)
T 3p3y_A 401 VLD 403 (404)
T ss_dssp EC-
T ss_pred EEe
Confidence 864
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=298.85 Aligned_cols=353 Identities=14% Similarity=0.193 Sum_probs=233.5
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEE-EeecCCCceeEEEeeeeeeEEEEeccccCC------eEEEEEEEEccCc
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVL-ESHDKDEFMVWNKIETTSTTYEVTKLTTKH------EYMFRVAAVNAIG 123 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g~y~c~a~~~~g 123 (803)
.+....|..++|.|..... ..+...|.. ........ .-......++.|.|.+++.+| +|.|+|.|.|..|
T Consensus 13 ~~~~~~G~~v~l~C~~~g~--p~p~v~W~k~~g~~~~~~-~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g 89 (388)
T 2v5m_A 13 RIDFSNSTGAEIECKASGN--PMPEIIWIRSDGTAVGDV-PGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 89 (388)
T ss_dssp EEEEETTTCEEEECEEEEE--SCCEEEEEETTSCBCCCB-TTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred eEEEEcCccEEEEEECCCC--CCCEEEEEcCCCCccccC-CCceEEcCCceEEecccChhhccccccCceEEEEEEccCC
Confidence 3445679999999986311 112222221 11111100 000111245789999999887 9999999999887
Q ss_pred cCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCC---CeeEEEEcCeeccc------eeEEEec
Q psy2776 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWYKDDSLIKG------RNITYEN 194 (803)
Q Consensus 124 ~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~~~~~~~~~------~~~~~~~ 194 (803)
... +....+... .+|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++..+.. .+....
T Consensus 90 ~~~-s~~~~v~v~------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~- 161 (388)
T 2v5m_A 90 SII-SRDVHVRAV------VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL- 161 (388)
T ss_dssp EEE-CCCEEEEEE------CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC-
T ss_pred eEE-ecceEEEEc------cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc-
Confidence 532 222222222 2344445566788899999999999987653 68999999876521 222222
Q ss_pred CeeEEEEecCCCCcc-eEEEEEEEcCCcCeee-E---EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEE
Q psy2776 195 NVARFTVVNCSESSE-GRYTCKATNEAGTAET-S---CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~~-s---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (803)
....|.|.+++.+|+ |.|+|.+.|..+.... + ..|.|..+....
T Consensus 162 ~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~------------------------------- 210 (388)
T 2v5m_A 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSS------------------------------- 210 (388)
T ss_dssp TTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCE-------------------------------
T ss_pred cCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCC-------------------------------
Confidence 235799999999999 9999999998654322 2 234444331000
Q ss_pred EEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccc
Q psy2776 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKE 348 (803)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~ 348 (803)
.+.+.........+.+|+.+.|.|.+ +.|.+.+.|+|++..+..
T Consensus 211 -----------------------------------~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~ 255 (388)
T 2v5m_A 211 -----------------------------------APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR 255 (388)
T ss_dssp -----------------------------------EEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSC
T ss_pred -----------------------------------CCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcc
Confidence 00000001111234569999999999 889999999998654432
Q ss_pred cceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEE
Q psy2776 349 SARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVV 428 (803)
Q Consensus 349 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 428 (803)
..... .. ..+. .....|.|.
T Consensus 256 ~~~~~--~~--------------------------------------------------------~~~~--~~~~~L~i~ 275 (388)
T 2v5m_A 256 KQAVV--LN--------------------------------------------------------DRVK--QVSGTLIIK 275 (388)
T ss_dssp EEECC--CS--------------------------------------------------------SSEE--EETTEEEES
T ss_pred ccccc--cc--------------------------------------------------------Ccee--cccCEEEEC
Confidence 11100 00 0000 112358999
Q ss_pred eccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccc
Q psy2776 429 NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAI 508 (803)
Q Consensus 429 ~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~ 508 (803)
+++.+|+|.|+|.|.|..|.... .+.|.|..+|.+..
T Consensus 276 ~v~~~d~G~Y~C~a~n~~g~~~~------------------------------------------~~~l~V~~~p~~~~- 312 (388)
T 2v5m_A 276 DAVVEDSGKYLCVVNNSVGGESV------------------------------------------ETVLTVTAPLSAKI- 312 (388)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEE------------------------------------------EEEEEEEEEEEEEE-
T ss_pred cCCHHHCeEEEEEEecCCCceeE------------------------------------------EEEEEEeCCCcccc-
Confidence 99999999999999999987655 33444444443211
Q ss_pred eeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 509 KLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 509 ~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ .+.|.|.++..+|+|.|+|.|.|..|
T Consensus 313 -----~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~----------~~~L~i~~v~~~d~G~Y~C~a~N~~G 377 (388)
T 2v5m_A 313 -----DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRNDRE 377 (388)
T ss_dssp -----ESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred -----CCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC----------CCEEEEecCChhhCEEEEEEEEcCCC
Confidence 113567889999999999999999999999999988653 45899999999999999999999999
Q ss_pred CeEEEEEEEE
Q psy2776 589 STSLDLSLQV 598 (803)
Q Consensus 589 ~~s~s~~l~V 598 (803)
....++.|.|
T Consensus 378 ~~~~~~~l~V 387 (388)
T 2v5m_A 378 SAEASAELKL 387 (388)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEEEEe
Confidence 9999999887
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=300.72 Aligned_cols=377 Identities=14% Similarity=0.141 Sum_probs=220.4
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eec------------------cceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLI------------------KGRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ...++... .+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (444)
T 1igt_B 7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL 86 (444)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence 3456788999999999998754 5689999863 211 01123322 23578999999
Q ss_pred CCCcceEEEEEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 205 SESSEGRYTCKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+.+|+|.|+|.+.|..+.. ...+.|.|......
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~-------------------------------------------- 122 (444)
T 1igt_B 87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTT-------------------------------------------- 122 (444)
T ss_dssp CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCB--------------------------------------------
T ss_pred CHHHCEEEEEEEecCCcccccccCcEEEEecCCCCC--------------------------------------------
Confidence 9999999999999976542 12345666532100
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEEEcC
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIITSRG 358 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~~~~ 358 (803)
.+.+....+.. .+.+|+.+.|.|.+ + .|.+ .+.|++++..+...........
T Consensus 123 -----------------------~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~- 177 (444)
T 1igt_B 123 -----------------------APSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQS- 177 (444)
T ss_dssp -----------------------CCEEEEECCCS-SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEET-
T ss_pred -----------------------CCceeEecccc-cCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccC-
Confidence 00011011111 12569999999999 5 4776 9999999876421100000000
Q ss_pred ceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeE
Q psy2776 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438 (803)
Q Consensus 359 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 438 (803)
|.|.+ ...|+|.++..+| |.|
T Consensus 178 ---------------~~~~~-------------------------------------------~s~L~i~~~~~~d-g~Y 198 (444)
T 1igt_B 178 ---------------DLYTL-------------------------------------------SSSVTVTSSTWPS-QSI 198 (444)
T ss_dssp ---------------TEEEE-------------------------------------------EEEEEECSTTTTT-SCC
T ss_pred ---------------CcEEE-------------------------------------------EEEEEEchhhcCC-CeE
Confidence 22211 1247788888888 888
Q ss_pred EEEeeCCceeeeeecccCCCCceeEEeeeccC-cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc
Q psy2776 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKAD-TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517 (803)
Q Consensus 439 ~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 517 (803)
+|.|.|..+...... .+.+.... ..+.+.. -....+..+|. +.+ .++..
T Consensus 199 ~C~a~n~~~~~~~~~---------~i~~~~~~~~~~~~~~----------------~~~~~~~~~p~---v~~--~~p~~ 248 (444)
T 1igt_B 199 TCNVAHPASSTKVDK---------KIEPRGPTIKPCPPCK----------------CPAPNLLGGPS---VFI--FPPKI 248 (444)
T ss_dssp EEEEEETTTTEEEEE---------ECCCCCCSCCCCCCCS----------------CCCSCCCCCCE---EEE--ECCCH
T ss_pred EEEEEeCCCCcceEE---------EeccCCCCcccCCccc----------------cCCcccCCCce---EEe--cCCch
Confidence 888888877644321 11110000 0000000 00000111111 101 11111
Q ss_pred eE-EeecceeEEEEEEcCcC---C-CeeEEeeCCeeecCCCcEEEE-ecC----CeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 518 QR-LSVKSQWKVEVKYFGFP---R-PEISWMKNGAEITDSKACRIF-IDE----ETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 518 ~~-v~~g~~v~l~C~~~g~p---~-~~v~W~~~g~~i~~~~~~~~~-~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.. +.+|+.+.|.|.+.|.| + +.+.|+|+|..+......... ... ..+.|.|.++..+|+|.|+|.|.|..
T Consensus 249 ~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 328 (444)
T 1igt_B 249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD 328 (444)
T ss_dssp HHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred hheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCC
Confidence 22 47799999999999984 3 689999999887654221111 111 24689999999999999999999998
Q ss_pred CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCC
Q psy2776 588 GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667 (803)
Q Consensus 588 g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~ 667 (803)
|.......+.+..
T Consensus 329 ~~~~~~~~v~~~~------------------------------------------------------------------- 341 (444)
T 1igt_B 329 LPAPIERTISKPK------------------------------------------------------------------- 341 (444)
T ss_dssp CSSCEEEEEECCC-------------------------------------------------------------------
T ss_pred CCCceEEEEeccC-------------------------------------------------------------------
Confidence 8763333332100
Q ss_pred CCCCCCeeEeccce-eEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE--EEeeCc---eEEEEEecCCCCC
Q psy2776 668 SPGQAPLFIERFEE-KTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR--EIFDGE---NIILELKEADSET 739 (803)
Q Consensus 668 ~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~--~~~~~~---~~~L~i~~v~~~~ 739 (803)
....+|.+...+.. ..+. ++.++|.|.+.|. |.+ .|.|+++|.++....... ...++. ...|.|... ..+
T Consensus 342 ~~~~~P~v~~~~~~~~~~~-~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~-~~~ 419 (444)
T 1igt_B 342 GSVRAPQVYVLPPPEEEMT-KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKK-NWV 419 (444)
T ss_dssp CCCBCCEEEEECCCGGGTT-SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH-HHH
T ss_pred CCCCCCEEEEeCCChHHcc-CCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChH-Hhc
Confidence 01125555443332 2233 4459999999995 665 899999999884321111 112232 234667766 456
Q ss_pred CceeEEEEEEccCcc
Q psy2776 740 DAGDYKVVATNELGS 754 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~ 754 (803)
|+|.|+|.|.|..-.
T Consensus 420 d~g~YtC~a~n~~l~ 434 (444)
T 1igt_B 420 ERNSYSCSVVHEGLH 434 (444)
T ss_dssp TCCCEEEEEECTTSG
T ss_pred CCCeEEEEEECCCcC
Confidence 799999999997643
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=278.92 Aligned_cols=266 Identities=22% Similarity=0.351 Sum_probs=197.0
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +.|. .+.|++ +|..+....++.+..++
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-------------------------------- 57 (291)
T 2wim_A 11 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-------------------------------- 57 (291)
T ss_dssp CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET--------------------------------
T ss_pred ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC--------------------------------
Confidence 345567789999999999 6664 899999 67777665554443333
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 58 ------------------------------~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~------------------ 89 (291)
T 2wim_A 58 ------------------------------VRSRLTIYNANIEDAGIYRCQATDAKGQTQEA------------------ 89 (291)
T ss_dssp ------------------------------TEEEEEECSCCGGGCEEEEEEEECSSSCEEEE------------------
T ss_pred ------------------------------CEEEEEEccCCcccCEEEEEEEecccCceEEE------------------
Confidence 23458888888999999999999987765431
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus 90 -----------------------~~~l~v~~~~~~~~~------~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~ 140 (291)
T 2wim_A 90 -----------------------TVVLEIYQKLTFREV------VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140 (291)
T ss_dssp -----------------------EEEEEEECCCBCCSC------CCSEEEETTSCEEECCCCBCSSCCEEEEECC----C
T ss_pred -----------------------EEEEEecCCcceEeC------CCChhhcCCCCEEEEEEEccCCCCEEEEEECCcccc
Confidence 334444444443221 134678899999999999999999999999998876
Q ss_pred CC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE--EEEEEEEeeeEeEeeecccccEEEeeeeCCccceE
Q psy2776 551 DS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS--LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQY 626 (803)
Q Consensus 551 ~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s--~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~ 626 (803)
.. .++.+. ....|.|.++..+|+|.|+|.|.|..+... ..+.|.|..
T Consensus 141 ~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-------------------------- 191 (291)
T 2wim_A 141 TISDNRFAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV-------------------------- 191 (291)
T ss_dssp BCCCSSEEEC---TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB--------------------------
T ss_pred ccCCceEEEc---cCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc--------------------------
Confidence 53 333322 234799999999999999999999876543 344455543
Q ss_pred EEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccc--eeEEecCCeEEEEEEEeecCCCce
Q psy2776 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFE--EKTVKEKGTIRLMAKVKASPAPSI 704 (803)
Q Consensus 627 ~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~v~L~C~~~g~p~~~v 704 (803)
+|.+..... ...+.+|+.+.|.|.+.|.|.|.+
T Consensus 192 ---------------------------------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v 226 (291)
T 2wim_A 192 ---------------------------------------------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 226 (291)
T ss_dssp ---------------------------------------------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred ---------------------------------------------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence 333332222 346778999999999999999999
Q ss_pred EEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 705 ~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|+++|..+..+.++.+.. ....|.|.++ ..+|+|.|+|.|.|.+|.++.++.|.|..
T Consensus 227 ~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~ 284 (291)
T 2wim_A 227 SWFRNGKLIEENEKYILKG--SNTELTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQVFV 284 (291)
T ss_dssp EEEETTEECCCTTTEEECS--TTCEEEEESC-CSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred EEEECCEECcCCccEEEcC--CccEEEEeeC-CcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence 9999999998887765543 3458999999 78999999999999999999999999964
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=281.98 Aligned_cols=283 Identities=20% Similarity=0.343 Sum_probs=199.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEE---ec-CeeEEEEecCCC-CcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY---EN-NVARFTVVNCSE-SSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~~-~~~~L~i~~v~~-~d~G~Y~C~a 216 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+...+... .. ....|.|.+++. +|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 468889888999999999999999999999999999999998876544332 22 347899999998 9999999999
Q ss_pred EcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 217 TNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.|..|....++.|.|...+..+..
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~p~~-------------------------------------------------------- 107 (304)
T 2yd9_A 84 QNSVGEITVHAKLTVLREDQLPSG-------------------------------------------------------- 107 (304)
T ss_dssp ECSSCEECCEEEEEEECGGGCCTT--------------------------------------------------------
T ss_pred ECCCCeEEEEEEEEEeccccCCCC--------------------------------------------------------
Confidence 999998888888888766321110
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeecccccee-EEEEcCceeEEEEeecCCCCCc
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQDDET 374 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~g 374 (803)
...+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+...... .+..
T Consensus 108 ---------~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~------------------ 160 (304)
T 2yd9_A 108 ---------FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ------------------ 160 (304)
T ss_dssp ---------CCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE------------------
T ss_pred ---------CCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe------------------
Confidence 0011112334556679999999999 8999999999999888653210 0000
Q ss_pred cEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecc
Q psy2776 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454 (803)
Q Consensus 375 ~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~ 454 (803)
.....|.|.+++.+|+|.|+|.|.|..|......
T Consensus 161 ---------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~- 194 (304)
T 2yd9_A 161 ---------------------------------------------LRSGALQIESSEETDQGKYECVATNSAGVRYSSP- 194 (304)
T ss_dssp ---------------------------------------------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCC-
T ss_pred ---------------------------------------------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEecc-
Confidence 0111488999999999999999999988766421
Q ss_pred cCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 455 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
..|.|...+..|.+.. .+....+.+|+.+.|.|.+.|
T Consensus 195 ----------------------------------------~~l~v~~~~~~P~~~~---~~~~~~v~~G~~v~l~C~~~g 231 (304)
T 2yd9_A 195 ----------------------------------------ANLYVRVQNVAPRFSI---LPMSHEIMPGGNVNITCVAVG 231 (304)
T ss_dssp ----------------------------------------EEEEEECCCEEEEEEE---CCCCBCCCTTCCEEEEEEEEE
T ss_pred ----------------------------------------EEEEEEeeccCCcEEe---cCCceEEcCCCeEEEEEEEee
Confidence 1222211111111111 112355788999999999999
Q ss_pred cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 535 FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 535 ~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|.|.+.|+++|..+....+.. .+...|.|.++ +|+|.|+|.|.|..|..+.++.|.|...+
T Consensus 232 ~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 293 (304)
T 2yd9_A 232 SPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP 293 (304)
T ss_dssp ESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred eCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence 9999999999999987664321 23456777766 69999999999999999999999998866
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=297.78 Aligned_cols=375 Identities=16% Similarity=0.207 Sum_probs=216.6
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--ee---c---------------cceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SL---I---------------KGRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~---~---------------~~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|++++|.|.+.+.+ .+.+.|+|+. .. + ...++... ++..+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL 86 (457)
T ss_dssp CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence 3456788999999999998765 6789999842 11 1 01222221 24568999999
Q ss_pred CCCcceEEEEEEEcCCc------------CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEE
Q psy2776 205 SESSEGRYTCKATNEAG------------TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALN 272 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g------------~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (803)
+.+|+|.|+|.+.|..| .....+.|.|...+..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~----------------------------------- 131 (457)
T 1hzh_H 87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTK----------------------------------- 131 (457)
T ss_dssp CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCB-----------------------------------
T ss_pred CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCC-----------------------------------
Confidence 99999999999999875 1223456666542100
Q ss_pred EeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-eeeEEeecCeecccc
Q psy2776 273 VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-IQVKWLKKGKEIKES 349 (803)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~~i~W~~~g~~l~~~ 349 (803)
.+.+....+. ..+.+|+.+.|.|.+ +. |. +.+.|++++..+...
T Consensus 132 --------------------------------~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~ 178 (457)
T 1hzh_H 132 --------------------------------GPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH 178 (457)
T ss_dssp --------------------------------CCEEEEECCC-SCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEE
T ss_pred --------------------------------CCeEEecCcc-ccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccce
Confidence 0001111111 123569999999999 54 64 899999998765321
Q ss_pred ceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEe
Q psy2776 350 ARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVN 429 (803)
Q Consensus 350 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 429 (803)
...... ...|.|. ....|.|.+
T Consensus 179 ~~~~~~---------------~~~~~~~-------------------------------------------~~s~L~i~~ 200 (457)
T 1hzh_H 179 TFPAVL---------------QSSGLYS-------------------------------------------LSSVVTVPS 200 (457)
T ss_dssp EEEEEE---------------CTTSCEE-------------------------------------------EEEEEEECS
T ss_pred EcCceE---------------CCCCCEE-------------------------------------------EEEEEEecc
Confidence 100000 0111111 013588888
Q ss_pred ccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCC---Cc
Q psy2776 430 CSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ---QP 506 (803)
Q Consensus 430 ~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~---~~ 506 (803)
+..+| |.|+|.|.|..+...... .+.+..... .+.+.+...+. .|
T Consensus 201 ~~~~d-G~Y~C~a~n~~~~~~~~~---------~v~~~~~~~----------------------~~~~~~~~~~~~~~~p 248 (457)
T 1hzh_H 201 SSLGT-QTYICNVNHKPSNTKVDK---------KAEPKSCDK----------------------THTCPPCPAPELLGGP 248 (457)
T ss_dssp GGGGT-SCCEEEEEEGGGTEEEEE---------ECCCCCSCS----------------------SCSCCSCCCCCCSSSC
T ss_pred cccCC-ceEEEEEEeCCCCcceeE---------EecccCCCc----------------------ccccCCCCCccccCCc
Confidence 99888 999999999776544321 111110000 00000000000 01
Q ss_pred cceeeeccccce-EEeecceeEEEEEEcCcCCC----eeEEeeCCeeecCCCcEEEEecCCeEEEEEee---eccCc---
Q psy2776 507 AIKLVDSNLKSQ-RLSVKSQWKVEVKYFGFPRP----EISWMKNGAEITDSKACRIFIDEETSTIAIYS---VVRAD--- 575 (803)
Q Consensus 507 ~~~~~~~~~~~~-~v~~g~~v~l~C~~~g~p~~----~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~---v~~~d--- 575 (803)
.+.+ ..+... .+.+|+.+.|.|.+.|.|++ .+.|+|+|..+........... ..+.|.|.. +...|
T Consensus 249 ~v~~--~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~-~~g~~~~~~~l~i~~~d~~d 325 (457)
T 1hzh_H 249 SVFL--FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-YNSTYRVVSVLTVLHQDWLN 325 (457)
T ss_dssp EEEE--ECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEEC-TTSCEEEEEEECCCHHHHHH
T ss_pred eEEe--ECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceec-CCCcEEEEEEEEECHHHccC
Confidence 1111 111111 25679999999999998653 8999999998865422221111 112233332 23444
Q ss_pred CeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
+|.|+|.|.|..+....+..+.+..
T Consensus 326 ~G~Y~C~a~n~~~~~~~~~~v~~~~------------------------------------------------------- 350 (457)
T 1hzh_H 326 GKEYKCKVSNKALPAPIEKTISKAK------------------------------------------------------- 350 (457)
T ss_dssp TCCEEEEEECTTSSSCEEEEECCCC-------------------------------------------------------
T ss_pred CCcEEEEEeCCCCCCcceEEEEccc-------------------------------------------------------
Confidence 9999999998766544333332100
Q ss_pred eeeeeeecccCCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEE--EeeCc---e
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKRE--IFDGE---N 727 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~--~~~~~---~ 727 (803)
....+|.+...+.. ..+..|+ +.|.|.+.|.|++ .|.|+++|.++........ ..++. .
T Consensus 351 ------------~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~ 417 (457)
T 1hzh_H 351 ------------GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY 417 (457)
T ss_dssp ------------CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEE
T ss_pred ------------CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEE
Confidence 01125555444332 2344455 9999999997554 8999999999864322111 12232 2
Q ss_pred EEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 728 IILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..|.|... ..+|+|.|+|.|.|.....
T Consensus 418 s~l~i~~~-~~~~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 418 SKLTVDKS-RWQQGNVFSCSVMHEALHN 444 (457)
T ss_dssp EEEEEEHH-HHHTTCCEEEEEECTTSGG
T ss_pred EEEEEChH-HccCCCeEEEEEEECCCCC
Confidence 34666665 3478999999999986554
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-31 Score=276.67 Aligned_cols=269 Identities=18% Similarity=0.303 Sum_probs=198.4
Q ss_pred CceeeeccccceeEEEEe-cCC-ceeeEEee-cCeecccc-ceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSP-DIQVKWLK-KGKEIKES-ARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~-~g~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
|....+.+|+.+.|.|.+ +.| .+.+.|++ +|..+... .++.+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~-------------------------------- 56 (291)
T 1qz1_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW-------------------------------- 56 (291)
T ss_dssp SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEE--------------------------------
T ss_pred CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEE--------------------------------
Confidence 444556779999999999 655 69999999 78777632 1221111
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
...+...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 57 -----------------------------~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~---------------- 91 (291)
T 1qz1_A 57 -----------------------------NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA---------------- 91 (291)
T ss_dssp -----------------------------EETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE----------------
T ss_pred -----------------------------cCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEE----------------
Confidence 11244579999999999999999999988643321
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.+. ..+....+.+|+.+.|.|.+.|.|.+.+.|+++|..
T Consensus 92 -------------------------~~~l~v~~~~~~~------~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~ 140 (291)
T 1qz1_A 92 -------------------------TVNVKIFQKLMFK------NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140 (291)
T ss_dssp -------------------------EEEEEEECCSEEE------ECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSC
T ss_pred -------------------------EEEEEeecccccc------CCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEE
Confidence 3444444444321 112356788999999999999999999999999988
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQY 626 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~ 626 (803)
+......++... .+..|.|.++..+|+|.|+|.|.|..+.. ...+.|.|..+|
T Consensus 141 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p------------------------ 195 (291)
T 1qz1_A 141 VILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP------------------------ 195 (291)
T ss_dssp SSTTCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEE------------------------
T ss_pred cccCCCceEEEc-cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCC------------------------
Confidence 765433222222 23579999999999999999999976443 345566665533
Q ss_pred EEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEec--cceeEEecCCeEEEEEEEeecCCCce
Q psy2776 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER--FEEKTVKEKGTIRLMAKVKASPAPSI 704 (803)
Q Consensus 627 ~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~v~~g~~v~L~C~~~g~p~~~v 704 (803)
.+... +....+.+|+.+.|.|.+.|.|.|.+
T Consensus 196 -----------------------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i 228 (291)
T 1qz1_A 196 -----------------------------------------------TVQARQSIVNATANLGQSVTLVCDADGFPEPTM 228 (291)
T ss_dssp -----------------------------------------------EEEESCSEEEEETTSCCCEEEEEEEEEESCCEE
T ss_pred -----------------------------------------------cccccccccccccccCceEEEEEEEEEeCCCcE
Confidence 23222 22456788999999999999999999
Q ss_pred EEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 705 VWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 705 ~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|+++|.++..+. ++.. ......|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 229 ~W~~~g~~~~~~~~~~~~~~~--~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 229 SWTKDGEPIENEEEDDEKHIF--SDDSSELTIRNV-DKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp EEEETTEECCCC--CCSSEEE--CTTSCEEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEECCEECcCCCCCCcceEE--cCCCcEEEEEec-ChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 9999999987664 3332 334458999999 7899999999999999999999999885
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-31 Score=277.71 Aligned_cols=295 Identities=20% Similarity=0.274 Sum_probs=204.1
Q ss_pred eeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 315 VTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
...+.+|+.+.|.|.. +.|.+.+.|+|+|.++..+.++.+...+
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~---------------------------------- 55 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKG---------------------------------- 55 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEET----------------------------------
T ss_pred eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeC----------------------------------
Confidence 4566789999999887 5899999999999999876665554443
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
+...|.|.+++.+|+|.|+|.|.|..|.... . .+.+....
T Consensus 56 ----------------------------~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s-~---------~l~v~~~~-- 95 (312)
T 2y23_A 56 ----------------------------NKTKMTFKDLGMDDLGIYSCDVTDTDGIASS-Y---------LIDEEELK-- 95 (312)
T ss_dssp ----------------------------TEEEEEESSCCGGGCEEEEEEESSSCCCCEE-E---------EECHHHHH--
T ss_pred ----------------------------CEEEEEECcCCccCCEEEEEEEEeCCCcEEE-E---------EEEEeeee--
Confidence 2345778888889999999999998774432 1 11111000
Q ss_pred cCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITD 551 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~ 551 (803)
.+..+ . ....+|.+.... .....+.+|+.+.|.|.+. +.|.+.+.|+++|..+..
T Consensus 96 -------~~~~~-----------~-~~~~~p~~~~~~-----~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~ 151 (312)
T 2y23_A 96 -------RLLAL-----------S-HEHKFPTVPVKS-----ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE 151 (312)
T ss_dssp -------HHHHH-----------H-HHHHSCBCCEEE-----EEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECS
T ss_pred -------eeecc-----------c-ccCCCCcccccc-----CCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECee
Confidence 00000 0 000133322211 1256788999999999999 899999999999999998
Q ss_pred CCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 552 SKACRIFID--EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 552 ~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
+.++.+... .+...|.|.++..+|+|.|+|.|.|..+.. ...+.+....
T Consensus 152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~--------------------------- 202 (312)
T 2y23_A 152 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDV--------------------------- 202 (312)
T ss_dssp SSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHH---------------------------
T ss_pred CCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceE--EEEEEEcchh---------------------------
Confidence 877776654 455789999999999999999998754443 3333332100
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeee-ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEe
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALA-THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWF 707 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~ 707 (803)
....+... ..........+|.|...+. ..+.+|+.+.|.|.+.|.|.| .+.|+
T Consensus 203 ------------------------~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~ 257 (312)
T 2y23_A 203 ------------------------FKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWY 257 (312)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEEEEEEESCCSSCEEEEE
T ss_pred ------------------------hhhhcccccccccchhhccCCceeecce-EEEeCCCEEEEEEEEcCCCCCCEEEEe
Confidence 00000000 0000000012576765544 778999999999999999998 99999
Q ss_pred eCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 708 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 708 ~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
++|.++..+.++.+. +....|.|.++ +.+|+|.|+|.|.|.+|.++.++.|+|+
T Consensus 258 ~~g~~~~~~~~~~~~--~~~~~L~I~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 258 KDEREISVDEKHDFK--DGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp ETTEEEEEECCC------CEEEEEECSC-SGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred eCCEECCCCCcEEEE--CCEEEEEECcC-CHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 999999876666554 44579999999 7999999999999999999999998874
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=282.76 Aligned_cols=298 Identities=18% Similarity=0.311 Sum_probs=205.9
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..+|.|..+. +..+.+|+.+.|.|.+.+. |.+.+.|+|++..+.. .++....+...|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 83 (317)
T 2y25_A 5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 83 (317)
T ss_dssp SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence 4577787544 5889999999999999886 7789999999988863 34445556689999999999999999999999
Q ss_pred CcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeec
Q psy2776 220 AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFE 299 (803)
Q Consensus 220 ~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (803)
.|....++.|.|...+.
T Consensus 84 ~g~~~~~~~l~v~~~~~--------------------------------------------------------------- 100 (317)
T 2y25_A 84 RGKDKSRLKLVDEAFKE--------------------------------------------------------------- 100 (317)
T ss_dssp SCEEEEEECCSTHHHHH---------------------------------------------------------------
T ss_pred CCcEEEEEEEEEecCcc---------------------------------------------------------------
Confidence 88766555554443210
Q ss_pred cCCCccccccccCCceeeeccccceeEEEEe-c----------CCceeeEEeecCeeccccceeEEEEcCceeEEEEeec
Q psy2776 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S----------SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~----------~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~ 368 (803)
+.. .+....+..|+.+.|.|.+ + .|.+.+.|+++|..+..+.+..+...+
T Consensus 101 --------~~~-~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---------- 161 (317)
T 2y25_A 101 --------LMM-EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG---------- 161 (317)
T ss_dssp --------HHH-HHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS----------
T ss_pred --------ccc-cCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC----------
Confidence 000 0011122335555555554 3 789999999999988866554443332
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
+...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 162 ----------------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 189 (317)
T 2y25_A 162 ----------------------------------------------------EQIWLQINEPTPNDKGKYVMELFDGKTG 189 (317)
T ss_dssp ----------------------------------------------------SEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred ----------------------------------------------------CEEEEEECcCCcccCeeEEEEEEeCCce
Confidence 3345888889999999999999998887
Q ss_pred eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEE
Q psy2776 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528 (803)
Q Consensus 449 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l 528 (803)
...+. .+.+.... .....++.+. ...+....+| .+.........+.+|+.+.|
T Consensus 190 ~~~~~---------~l~v~~~~-----~~~~~~~~~~--------~~~~~~~~~p-----~~~~~~~~~~~v~~g~~~~l 242 (317)
T 2y25_A 190 HQKTV---------DLSGQAYD-----EAYAEFQRLK--------QAAIAEKNRA-----RVLGGLPDVVTIQEGKALNL 242 (317)
T ss_dssp EEEEE---------EECHHHHH-----HHHHHHHHHH--------HHHHHTTTSC-----EEEEBCCSEEEEETTSBBCE
T ss_pred EEEEE---------EEeeeecc-----ccchhhcccC--------CcccCcCCCC-----cccccCCccEEEEcCCEEEE
Confidence 76632 12111000 0000000000 0000000111 12222223567899999999
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
.|.+.|.|.|.+.|+++|..+..+.++.+... +....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 243 ~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp EEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence 99999999999999999999988887777655 55679999999999999999999999999999999998754
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=276.90 Aligned_cols=278 Identities=20% Similarity=0.355 Sum_probs=200.8
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccC-CCeeEEEE-cCeeccc--eeEEE---ecCeeEEEEecCCCCcceEEEEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVP-TPDIKWYK-DDSLIKG--RNITY---ENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p-~p~i~W~~-~~~~~~~--~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
++.+...+.+..+.+|+.+.|.|.+.+.| .+.+.|++ ++..+.. .++.. ......|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 56677788889999999999999999876 68999999 7766653 22222 345679999999999999999999
Q ss_pred EcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceee
Q psy2776 217 TNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWF 295 (803)
Q Consensus 217 ~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (803)
.|..|.. ...+.|.|...+.
T Consensus 82 ~n~~g~~~~~~~~l~v~~~~~----------------------------------------------------------- 102 (291)
T 1qz1_A 82 TAEDGTQSEATVNVKIFQKLM----------------------------------------------------------- 102 (291)
T ss_dssp ECTTSCEEEEEEEEEEECCSE-----------------------------------------------------------
T ss_pred EcCCCCeeEEEEEEEeecccc-----------------------------------------------------------
Confidence 9998643 3455666654320
Q ss_pred eeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCc
Q psy2776 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDET 374 (803)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g 374 (803)
+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+...........
T Consensus 103 -------------~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----------------- 152 (291)
T 1qz1_A 103 -------------FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----------------- 152 (291)
T ss_dssp -------------EEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC-----------------
T ss_pred -------------ccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc-----------------
Confidence 0011223445679999999999 889999999999988754321111000
Q ss_pred cEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecc
Q psy2776 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454 (803)
Q Consensus 375 ~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~ 454 (803)
....|.|.+++.+|+|.|+|.|.|..+......
T Consensus 153 ----------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~- 185 (291)
T 1qz1_A 153 ----------------------------------------------SNNYLQIRGIKKTDEGTYRCEGRILARGEINFK- 185 (291)
T ss_dssp ----------------------------------------------TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEE-
T ss_pred ----------------------------------------------cCCcEEEccCccccCeEEEEEEEecCCCceeeE-
Confidence 011388888999999999999998764333211
Q ss_pred cCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 455 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.+.+..+|.+... .......+.+|+.+.|.|.+.|
T Consensus 186 ---------------------------------------~~~l~v~~~p~~~~~----~~~~~~~~~~g~~v~l~C~~~g 222 (291)
T 1qz1_A 186 ---------------------------------------DIQVIVNVPPTVQAR----QSIVNATANLGQSVTLVCDADG 222 (291)
T ss_dssp ---------------------------------------EEEEEEEEEEEEEES----CSEEEEETTSCCCEEEEEEEEE
T ss_pred ---------------------------------------EEEEEEecCCccccc----ccccccccccCceEEEEEEEEE
Confidence 233334344432111 1112345678999999999999
Q ss_pred cCCCeeEEeeCCeeecCCCc--EEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 535 FPRPEISWMKNGAEITDSKA--CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 535 ~p~~~v~W~~~g~~i~~~~~--~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.|+++|..+....+ .++....++..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 223 ~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 223 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp ESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 99999999999999877641 2333344567999999999999999999999999999999999864
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-32 Score=305.30 Aligned_cols=373 Identities=15% Similarity=0.171 Sum_probs=223.5
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. ..++... ++..+|.|.++
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL 85 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence 3456788999999999998753 6789999963 2110 1233322 23458999999
Q ss_pred CCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 205 SESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
+.+|+|.|+|.+.|..+.....+.|.|...+..
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~----------------------------------------------- 118 (434)
T 1igy_B 86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTT----------------------------------------------- 118 (434)
T ss_dssp CGGGCSEECCCCSSSSCCCCCCEECEECCSCCB-----------------------------------------------
T ss_pred ChHHCEEEEEEEEccccccCCceEEEEccCCCC-----------------------------------------------
Confidence 999999999999986544444556666532100
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cce-eeEEeecCeeccccceeEEEEcCcee
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PDI-QVKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
. +.+....+.. .+.+|+.+.|.|.+ +. |.+ .+.|+|++..+... ...
T Consensus 119 ------------------~--P~i~~~~~~~-~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~------~~~--- 168 (434)
T 1igy_B 119 ------------------P--PSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH------TFP--- 168 (434)
T ss_dssp ------------------C--CCEEEECCCC-CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE------ECC---
T ss_pred ------------------C--CeEEEcCCcc-ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE------ecC---
Confidence 0 0011011111 23569999999999 54 766 99999998753210 000
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
... +.|.|.+. ..|+|.++..+| |.|+|.
T Consensus 169 -----~~~--~~~~~~~~-------------------------------------------s~L~i~~~~~~d-g~Y~C~ 197 (434)
T 1igy_B 169 -----AVL--QSDLYTLS-------------------------------------------SSVTVPSSPRPS-ETVTCN 197 (434)
T ss_dssp -----CEE--CSSCEEEE-------------------------------------------EEEEEETTTTTS-SCCEEE
T ss_pred -----cee--cCCcEEEE-------------------------------------------EEEEEcchhcCC-CcEEEE
Confidence 000 01333322 248899999888 999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceE-E
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR-L 520 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~-v 520 (803)
|.|..+...... .+.+...... +.....+..|.+.+. ++.... +
T Consensus 198 a~n~~~~~~~~~---------~~~~~~~~~~------------------------v~~~~~~~~p~v~~~--~p~~~~~v 242 (434)
T 1igy_B 198 VAHPASSTKVDK---------KIVPRDCGCK------------------------PCICTVPEVSSVFIF--PPKPKDTL 242 (434)
T ss_dssp EECTTTTCCEEE---------ECCCCCCCCC------------------------CCCCCCSSSCCEEEE--CCCHHHHH
T ss_pred EEeCCCCcccee---------eccCCCCCCc------------------------cccCCCCcCcEEEEe--CCChHHhc
Confidence 999887644321 0111000000 000000111111111 111111 6
Q ss_pred eecceeEEEEEEcCcC----CCeeEEeeCCeeecCCCcEEEE-ec----CCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 521 SVKSQWKVEVKYFGFP----RPEISWMKNGAEITDSKACRIF-ID----EETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p----~~~v~W~~~g~~i~~~~~~~~~-~~----~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.+|+.+.|.|.+.|.+ .+.+.|+|+|..+......... .. ...+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 243 ~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 322 (434)
T 1igy_B 243 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAP 322 (434)
T ss_dssp STTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSC
T ss_pred ccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCc
Confidence 7899999999999984 3589999999877543211111 01 1235799999999999999999999988642
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
....+.+.. ....
T Consensus 323 ~~~~v~~~~-------------------------------------------------------------------~~~~ 335 (434)
T 1igy_B 323 IEKTISKTK-------------------------------------------------------------------GKPR 335 (434)
T ss_dssp CCCCCCCCC-------------------------------------------------------------------SCCB
T ss_pred eeEEEeccC-------------------------------------------------------------------CCCc
Confidence 221211100 0112
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEE--EeeCc---eEEEEEecCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKRE--IFDGE---NIILELKEADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~--~~~~~---~~~L~i~~v~~~~D~G~Y 744 (803)
+|.+...+.......|+.++|.|.+.|. |+ +.|.|+|+|.++........ ..++. ...|.|... ..+|+|.|
T Consensus 336 ~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~-~~~~~g~Y 414 (434)
T 1igy_B 336 APQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKS-NWEAGNTF 414 (434)
T ss_dssp CCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHH-HHHTTCCE
T ss_pred CCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECch-hccCCCEE
Confidence 5555444433333457789999999996 43 38999999998853221111 11222 245777776 45789999
Q ss_pred EEEEEccCcc
Q psy2776 745 KVVATNELGS 754 (803)
Q Consensus 745 ~C~a~N~~G~ 754 (803)
+|.|.|....
T Consensus 415 tC~a~n~~l~ 424 (434)
T 1igy_B 415 TCSVLHEGLH 424 (434)
T ss_dssp EEEEEETTSG
T ss_pred EEEEEcCCCC
Confidence 9999998654
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=283.19 Aligned_cols=381 Identities=12% Similarity=0.139 Sum_probs=221.8
Q ss_pred cCcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEec
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVN 203 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~ 203 (803)
.+....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. ..++... ++..+|.|.+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (475)
T 1iga_A 7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS 86 (475)
T ss_pred cCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECC
Confidence 35667888999999999998754 5679999853 1110 1222222 2346899999
Q ss_pred CCCCcceEEEEEEEcCCcC------eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecc
Q psy2776 204 CSESSEGRYTCKATNEAGT------AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVS 277 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~------~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (803)
++.+|+|.|.|.+.|..|. ....+.|.|...+. .
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~--~-------------------------------------- 126 (475)
T 1iga_A 87 LRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASP--T-------------------------------------- 126 (475)
T ss_pred CChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCC--c--------------------------------------
Confidence 9999999999999998762 11234565553210 0
Q ss_pred ccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-e-eeEEeecCeeccccceeE
Q psy2776 278 KLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-I-QVKWLKKGKEIKESARHI 353 (803)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~-~i~W~~~g~~l~~~~~~~ 353 (803)
. +.+....+. . ..+|+.+.|.|.+ +. |. + .+.|++++.........
T Consensus 127 -------------------------~--P~i~~~~~~-~-~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~- 176 (475)
T 1iga_A 127 -------------------------S--PKVFPLSLC-S-TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFP- 176 (475)
T ss_pred -------------------------C--CeEEecCcc-c-cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCC-
Confidence 0 000000011 1 1469999999999 54 65 4 99999987432110000
Q ss_pred EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCC
Q psy2776 354 ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433 (803)
Q Consensus 354 ~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 433 (803)
.+.....|.|.. ...|+|.++..+
T Consensus 177 -------------~~~~~~~g~~~~-------------------------------------------~s~L~i~~~~~~ 200 (475)
T 1iga_A 177 -------------PSQDASGDLYTT-------------------------------------------SSQLTLPATQCL 200 (475)
T ss_pred -------------ceecCCCCcEEE-------------------------------------------EEEEEechhHcC
Confidence 000011122211 124788888888
Q ss_pred CceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeec
Q psy2776 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513 (803)
Q Consensus 434 d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~ 513 (803)
|.|.|+|.|.|..+..... .+.+.+........... +. -....+ .+|. +...
T Consensus 201 d~g~Y~C~a~n~~~~~~~~--------~v~l~V~~~~~~~~~~~----~~----------~~~~~~-~~p~-----v~~~ 252 (475)
T 1iga_A 201 AGKSVTCHVKHYTNPSQDV--------TVPCPVPSTPPTPSPST----PP----------TPSPSC-CHPR-----LSLH 252 (475)
T ss_pred CCceEEEEEEECCCCceee--------eEecccccCcccccccc----cc----------cCCCCC-CCcE-----EEEc
Confidence 9999999999987632111 11111111000000000 00 000000 1111 1111
Q ss_pred cccceEEeecceeEEEEEEcCcCC---CeeEEeeCCeeecCCCcEE-EEe-c---CCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGFPR---PEISWMKNGAEITDSKACR-IFI-D---EETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~p~---~~v~W~~~g~~i~~~~~~~-~~~-~---~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
.+....+.+|+.+.|.|.+.|.++ +.+.| ++..+....... ... . ...+.|.|.++..+|+|.|+|.|.|
T Consensus 253 ~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n 330 (475)
T 1iga_A 253 RPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY 330 (475)
T ss_pred CCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEc
Confidence 111233578999999999998755 68999 444443221111 111 0 1246799999999999999999999
Q ss_pred CCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeeccc
Q psy2776 586 AAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHAT 665 (803)
Q Consensus 586 ~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~ 665 (803)
..|.......|.+..
T Consensus 331 ~~~~~~~~~~v~~~~----------------------------------------------------------------- 345 (475)
T 1iga_A 331 PESKTPLTATLSKSG----------------------------------------------------------------- 345 (475)
T ss_pred CCCCCceEEEeecCC-----------------------------------------------------------------
Confidence 988765444443211
Q ss_pred CCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecCC--CceEEeeCCeeccCCCCe----EEE---eeCc---eEEEEE
Q psy2776 666 LGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPA--PSIVWFRNNKPLLSSPKK----REI---FDGE---NIILEL 732 (803)
Q Consensus 666 ~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~~~l~~~~~~----~~~---~~~~---~~~L~i 732 (803)
...+|.+...+.. ..+.+|+.+.|.|.+.|.++ +.|.|+|||.++..+... ... .++. ...|.|
T Consensus 346 ---~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i 422 (475)
T 1iga_A 346 ---NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV 422 (475)
T ss_pred ---CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEE
Confidence 0114555433332 34678999999999999733 489999999998765311 111 1222 245777
Q ss_pred ecCCCCCCceeEEEEEEccCcce
Q psy2776 733 KEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
... ..+|+|.|+|.|.|.....
T Consensus 423 ~~~-~~~~~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 423 AAE-DWKKGDTFSCMVGHEALPL 444 (475)
T ss_pred ChH-HhcCCCEEEEEEEcCCCCC
Confidence 776 4678999999999987653
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=272.16 Aligned_cols=276 Identities=22% Similarity=0.362 Sum_probs=199.5
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEE-cCeeccc-ee--EEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-DDSLIKG-RN--ITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~-~~~~~~~-~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.+|.+...+.+..+.+|+.+.|.|.+.+.|. .+.|++ ++..+.. .+ +...+....|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 4678888888899999999999999998775 899999 6665542 22 33344567899999999999999999999
Q ss_pred CCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 219 EAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 219 ~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
..|... ..+.|.|...+.
T Consensus 82 ~~g~~~~~~~~l~v~~~~~------------------------------------------------------------- 100 (291)
T 2wim_A 82 AKGQTQEATVVLEIYQKLT------------------------------------------------------------- 100 (291)
T ss_dssp SSSCEEEEEEEEEEECCCB-------------------------------------------------------------
T ss_pred ccCceEEEEEEEEecCCcc-------------------------------------------------------------
Confidence 988763 345565554421
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc--eeEEEEcCceeEEEEeecCCCCCc
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQDDET 374 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~g 374 (803)
+ ...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+.... ++.+..
T Consensus 101 ----------~-~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~------------------ 151 (291)
T 2wim_A 101 ----------F-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA------------------ 151 (291)
T ss_dssp ----------C-CSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT------------------
T ss_pred ----------e-EeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc------------------
Confidence 0 111223345679999999999 78999999999987765321 111111
Q ss_pred cEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecc
Q psy2776 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454 (803)
Q Consensus 375 ~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~ 454 (803)
...|.|.+++.+|+|.|+|.+.+..+......
T Consensus 152 -----------------------------------------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~- 183 (291)
T 2wim_A 152 -----------------------------------------------NNNLQILNINKSDEGIYRCEGRVEARGEIDFR- 183 (291)
T ss_dssp -----------------------------------------------TSCEEETTCCGGGCEEEEEEEEETTTTEEEEE-
T ss_pred -----------------------------------------------CCCEEEEecchhhCEEEEEEEEECCCCeeEEe-
Confidence 11388888999999999999998764433211
Q ss_pred cCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 455 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.+.+..+|.+.... ......+.+|+.+.|.|.+.|
T Consensus 184 ---------------------------------------~~~~~v~~~p~~~~~~----~~~~~~~~~g~~~~l~C~~~g 220 (291)
T 2wim_A 184 ---------------------------------------DIIVIVNVPPAISMPQ----KSFNATAERGEEMTFSCRASG 220 (291)
T ss_dssp ---------------------------------------EEEEEEEBCCCCBCSC----SEEECCSSSCCEEEEECBCCC
T ss_pred ---------------------------------------eEEEEeccCCccccCc----ccccceecCCCeEEEEEEeec
Confidence 3344444555432211 001234678999999999999
Q ss_pred cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 535 FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 535 ~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|.|.+.|+++|..+..+.++.+. ..+..|.|.++..+|+|.|+|.|.|..|....++.|.|..++
T Consensus 221 ~p~p~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 221 SPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp BSCCEEEEEETTEECCCTTTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred CCCCeEEEEECCEECcCCccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 999999999999999887766543 345789999999999999999999999999999999998875
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=279.53 Aligned_cols=287 Identities=14% Similarity=0.150 Sum_probs=200.7
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~ 177 (803)
...|.|.+++.+|+|.|+|.+.+..+. ..+.+.. +...+ ...+.+|+.+.|.|.+.+.|.|.+.
T Consensus 66 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~------~~l~V~~---------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~ 129 (363)
T 1wio_A 66 NFPLIIKNLKIEDSDTYICEVEDQKEE------VQLLVFG---------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQ 129 (363)
T ss_dssp CCCEEECSCCGGGCEEEEEEETTEEEE------EEEEEEE---------EEESS-CSSEESBSCEEEEEECCTTCCCCEE
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCCc------EEEEEEe---------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEE
Confidence 557999999999999999999887531 1222211 11122 2357799999999999999999999
Q ss_pred EEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEee
Q psy2776 178 WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKR 257 (803)
Q Consensus 178 W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (803)
|++++..+ ......|.|.+++.+|+|.|+|.|.|..+....++.|.|...+.
T Consensus 130 W~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~--------------------- 181 (363)
T 1wio_A 130 CRSPRGKN-------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK--------------------- 181 (363)
T ss_dssp EECSSSCE-------EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC---------------------
T ss_pred EEcCCCcc-------cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC---------------------
Confidence 99987543 12346899999999999999999999876666566666654321
Q ss_pred eccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-----
Q psy2776 258 VTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S----- 331 (803)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~----- 331 (803)
.+....+.+|+.+.|.|.+ +
T Consensus 182 ------------------------------------------------------~~~~~~~~~G~~v~l~C~~~~~~~~~ 207 (363)
T 1wio_A 182 ------------------------------------------------------ASSIVYKKEGEQVEFSFPLAFTVEKL 207 (363)
T ss_dssp ------------------------------------------------------SEEEEEEETBCCEEEECCCCCCCCSS
T ss_pred ------------------------------------------------------CCCceEEecCCEEEEEEEEecccccC
Confidence 0122345579999999988 5
Q ss_pred CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCccee
Q psy2776 332 SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLI 411 (803)
Q Consensus 332 ~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (803)
.|.+.+.|+++|..+..... .+...+.. +.+.....+
T Consensus 208 ~P~p~i~W~~~g~~~~~~~~-~~~~~~~~--~~~~~~~~~---------------------------------------- 244 (363)
T 1wio_A 208 TGSGELWWQAERASSSKSWI-TFDLKNKE--VSVKRVTQD---------------------------------------- 244 (363)
T ss_dssp CEEEEEEEEESSCCCCCCEE-EEEECSSC--EEEEEEECS----------------------------------------
T ss_pred CCceeEEEecCCCCccceEE-EEEecCCe--eeccccccc----------------------------------------
Confidence 78899999999988765211 11110100 000000000
Q ss_pred eeeeeEEecCeeEEEEEeccCCCceeEEEEeeCC--ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccc
Q psy2776 412 KGRNITYENNVARFTVVNCSESSEGRYTCKATNE--AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFS 489 (803)
Q Consensus 412 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~--~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (803)
.......++...|+|.+++.+|+|.|+|.|.|. .|....
T Consensus 245 -~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~-------------------------------------- 285 (363)
T 1wio_A 245 -PKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ-------------------------------------- 285 (363)
T ss_dssp -SCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEE--------------------------------------
T ss_pred -hhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEE--------------------------------------
Confidence 000001233457999999999999999999999 886554
Q ss_pred cccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe--eEEeeCCeeecCCCcEEEEecCCeEEEE
Q psy2776 490 YKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE--ISWMKNGAEITDSKACRIFIDEETSTIA 567 (803)
Q Consensus 490 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~--v~W~~~g~~i~~~~~~~~~~~~~~~~L~ 567 (803)
.+.|.|. -..|+.+.|.|.+.|.|+|. +.|+|+|..+.. +..|.
T Consensus 286 ----~~~l~V~-------------------~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-----------~~~l~ 331 (363)
T 1wio_A 286 ----EVNLVVM-------------------RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-----------SKREK 331 (363)
T ss_dssp ----EEEEEEE-------------------EECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-----------EESSS
T ss_pred ----EEeEEEE-------------------EecCCCeeEEEEEccccCCCccEEEEeCCCceee-----------eeeee
Confidence 2233332 01288999999999999988 999999987753 34678
Q ss_pred EeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 568 i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|.++..+|+|.|+|.|.|. |....+..|.|.
T Consensus 332 i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 332 AVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp EEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred eeeeccccceeEEEEEecC-CeEEEecceEec
Confidence 8999999999999999975 566666666663
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=280.52 Aligned_cols=338 Identities=14% Similarity=0.206 Sum_probs=205.7
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECc-cCCC-e
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTP-D 175 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p-~ 175 (803)
...|.|.+++.+|+|.|+|.+.+..+.. .+.. ..+.+..+ ..+|.+...+....+.+|+.+.|.|.+.| .|.+ .
T Consensus 74 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~-~~l~V~~~--~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~ 149 (438)
T 1qgc_4 74 DFTLTIDPVEADDVATYYCQQSNEVPLT-FGAG-TKLDLKRA--DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN 149 (438)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSSTTCC-BCCC-EEEEECCC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEE
T ss_pred cEEEEeCCCcCcCCeeEEEEEecCCCcc-ccCc-eeEEecCC--CCCCEEEecCCChhhccCCceEEEEEEccccCCCcE
Confidence 4689999999999999999999876632 1112 22333221 24666665444444457889999999987 6777 8
Q ss_pred eEEEEcCeeccceeEE---E--ec-----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEE
Q psy2776 176 IKWYKDDSLIKGRNIT---Y--EN-----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIIT 245 (803)
Q Consensus 176 i~W~~~~~~~~~~~~~---~--~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~ 245 (803)
+.|+|++..+...... . .. ....|.|.++..+|+|.|+|.|.|..+.......+ .... ....
T Consensus 150 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~--~~~~----~~~~-- 221 (438)
T 1qgc_4 150 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF--NRNE----CEVM-- 221 (438)
T ss_dssp EEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE--ETTC-----CCE--
T ss_pred EEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccc--cccc----ceeE--
Confidence 9999999887654111 1 01 13579999999999999999999988765332222 2110 0000
Q ss_pred eecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecccccee
Q psy2776 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDAT 325 (803)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (803)
+ ..+....+.+|+.+.
T Consensus 222 ---------------------------------------------------------------~-~~~~~~~v~~G~~v~ 237 (438)
T 1qgc_4 222 ---------------------------------------------------------------L-VESGGGLVKPGGSLK 237 (438)
T ss_dssp ---------------------------------------------------------------E-EEECCEEECTTCCEE
T ss_pred ---------------------------------------------------------------E-ecCCceEEecCCcEE
Confidence 0 011223466799999
Q ss_pred EEEEe-cCC--ceeeEEeec--CeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCcee
Q psy2776 326 FQVEL-SSP--DIQVKWLKK--GKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWW 400 (803)
Q Consensus 326 l~C~~-~~p--~~~i~W~~~--g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~ 400 (803)
|.|.+ +.| .+.+.|+|+ |..+.. ............ ......+.
T Consensus 238 L~C~~~g~p~~~~~v~W~k~~~g~~~~~----~~~~~~~~~~~~---~~~~~~~r------------------------- 285 (438)
T 1qgc_4 238 LSCTASGFIFNRCAMSWVRQTPEKRLEW----VATISSGGTYTY---YPDSVKGR------------------------- 285 (438)
T ss_dssp EEEEEESSCGGGSCEEEEEEETTTEEEE----EEEECTTSCCEE---CCGGGTTT-------------------------
T ss_pred EEEEEcccccCCcEEEEEECCCCCCcEE----EEEEeecCCcee---cCcccCCc-------------------------
Confidence 99999 777 689999997 443321 000000000000 00000000
Q ss_pred eeeeecCcceeeeeeeEEe--cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchh
Q psy2776 401 FESKYKDDSLIKGRNITYE--NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMK 478 (803)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 478 (803)
..+... .+...|.|.+++.+|+|.|+|.|.|..+....... +
T Consensus 286 -------------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~--~--------------------- 329 (438)
T 1qgc_4 286 -------------FTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYW--G--------------------- 329 (438)
T ss_dssp -------------EEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSB--C---------------------
T ss_pred -------------EEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceee--C---------------------
Confidence 011111 33567999999999999999999985542111000 0
Q ss_pred hhhcccccccccccceeeeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcE
Q psy2776 479 RVLQKLAVPFSYKTRTTNLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKAC 555 (803)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~ 555 (803)
....|.|.. ++..|.+..... ...+.+|+.+.|.|.+.|. |.+ .+.|+++|..+......
T Consensus 330 --------------~~~~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~ 392 (438)
T 1qgc_4 330 --------------QGTVVTVSAAKTTPPSVYPLAP---GSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP 392 (438)
T ss_dssp --------------CCEEEEECSSCCBCCEEEEECC---CGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECC
T ss_pred --------------CCEEEEEecCCCCCCeEEEcCc---ccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecC
Confidence 012233332 112222221111 1234579999999999997 877 99999999876532111
Q ss_pred EEEecC---CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 556 RIFIDE---ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 556 ~~~~~~---~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
.+...+ -.+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus 393 ~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 393 AVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp CEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred ccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence 111111 12479999999999 999999999999877665543
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=284.52 Aligned_cols=295 Identities=21% Similarity=0.298 Sum_probs=144.0
Q ss_pred CceeeeccccceeEEEEe-cC-CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SS-PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~-p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +. |.+.+.|+|+|..+..+.++.+
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~------------------------------------ 58 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV------------------------------------ 58 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe------------------------------------
Confidence 566677789999999999 54 6789999999988765433221
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.|.|. |..... +.|.+....
T Consensus 59 ------------------------------~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~---------~~l~V~~~~ 98 (334)
T 1ry7_B 59 ------------------------------GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCH---------FSVRVTDAP 98 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------ccceEEEeecccccCEEEEEEEEeC-CeEEEE---------EEEEEeccC
Confidence 1124888888889999999999887 443331 122222111
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
........ .. ..... .....+|.+..... .......+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.
T Consensus 99 ~~~~~~~~--~~--------~~~~~-~~~~~~p~~~~p~~--~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~ 165 (334)
T 1ry7_B 99 SSGDDEDG--ED--------EAEDT-GVDTGAPYWTRPER--MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR 165 (334)
T ss_dssp -------------------------------CCCCSCCTT--CCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCC
T ss_pred cccccccc--cc--------ccccc-cccCCCCEEecccc--ccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECc
Confidence 00000000 00 00000 00001222111000 00123568889999999999999999999999999887
Q ss_pred CCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 551 DSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 551 ~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
...+. .+........|.|.++..+|+|.|+|.|.|..|....++.|.|...+
T Consensus 166 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~--------------------------- 218 (334)
T 1ry7_B 166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--------------------------- 218 (334)
T ss_dssp TTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCC---------------------------
T ss_pred ccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCC---------------------------
Confidence 65432 11223345689999999999999999999999998888888886532
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEe-ccceeEEecCCeEEEEEEEeecCCCceEEee
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE-RFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~ 708 (803)
..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 219 ----------------------------------------~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~ 258 (334)
T 1ry7_B 219 ----------------------------------------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 258 (334)
T ss_dssp ----------------------------------------CSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEE
T ss_pred ----------------------------------------CCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEE
Confidence 11333332 2345778999999999999999999999999
Q ss_pred ----CCeeccCCCCe--EEEe-------eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 709 ----NNKPLLSSPKK--REIF-------DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 709 ----~~~~l~~~~~~--~~~~-------~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
||..+..+.+. .+.. ++....|.|.++ +.+|+|.|+|.|.|.+|....++.|.|.
T Consensus 259 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 326 (334)
T 1ry7_B 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGFSHHSAWLVVL 326 (334)
T ss_dssp CCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSC-CTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred CCcCCCccccCCCCeeEEEeecCccccccccccEEEEccC-CHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence 77777654431 1111 122347999999 7899999999999999999999999985
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=263.38 Aligned_cols=266 Identities=17% Similarity=0.235 Sum_probs=192.4
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+ .+.|++++..+. ........|.|.+++.+|+|.|+|.+.| |
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g 79 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE----MVENKKNEWIQEKAEATRTGTYTCSNSN--G 79 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC----EEEECSSEEEETTCCGGGCEEEEEEESS--S
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee----eecCCCceEEEeccCHHhCeEEEEEeeC--C
Confidence 46788888888889999999999999987 899999998761 1122337899999999999999999999 5
Q ss_pred CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccC
Q psy2776 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESK 301 (803)
Q Consensus 222 ~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (803)
. ..++.|.|...+..
T Consensus 80 ~-~~~~~l~V~~~~~~---------------------------------------------------------------- 94 (290)
T 2o26_X 80 L-TSSIYVFVRDPAKL---------------------------------------------------------------- 94 (290)
T ss_dssp C-EEEEEEEEECSSCC----------------------------------------------------------------
T ss_pred c-cEEEEEEEeCCCcc----------------------------------------------------------------
Confidence 4 66677777755210
Q ss_pred CCccccccccCCceeeeccccceeEEEEecCCc-eeeEE-eecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVELSSPD-IQVKW-LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~-~~i~W-~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
+ ..+....+.+|+.+.|.|.+..|. +.+.| +++|..+..+.++.+...+
T Consensus 95 ------~--~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~--------------------- 145 (290)
T 2o26_X 95 ------F--LVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA--------------------- 145 (290)
T ss_dssp ------B--CCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTT---------------------
T ss_pred ------c--ccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCC---------------------
Confidence 0 112233445799999999996588 99999 5788888765443332221
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
.|.|.+++.+|+| .|+|.|.|..+.....
T Consensus 146 --------------------------------------------~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~------ 175 (290)
T 2o26_X 146 --------------------------------------------GITIKNVKRAYHRLCVRCAAQRDGTWLHSD------ 175 (290)
T ss_dssp --------------------------------------------EEEEESCCGGGTTCEEEEEEEETTEEEECC------
T ss_pred --------------------------------------------CEEEecccHHHCCCEEEEEEEECCceEEeE------
Confidence 4889999999999 9999999985554331
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC----CCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ----SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.|.|. .+|.+ .. ......+.+|+.+.|.|.+.|
T Consensus 176 -----------------------------------~~~l~V~~~~~~~P~i---~~---~~~~~~v~~G~~v~l~C~~~g 214 (290)
T 2o26_X 176 -----------------------------------KFTLKVREAIKAIPVV---SV---PETSHLLKKGDTFTVVCTIKD 214 (290)
T ss_dssp -----------------------------------CEEEEEECCCCSCCEE---EC---SCSBCCCCTTCCEEEEEEEEE
T ss_pred -----------------------------------EEEEEEEeCCCCCCcc---cc---CCCcceEecCCcEEEEEEEec
Confidence 2333333 23321 11 112346788999999999999
Q ss_pred cCCCe-eEEeeCCeee----cCCCcEEEE---ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 535 FPRPE-ISWMKNGAEI----TDSKACRIF---IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 535 ~p~~~-v~W~~~g~~i----~~~~~~~~~---~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|.|. +.|+++|..+ ......... .....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 215 ~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 215 VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp SSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred CCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 99996 9999999873 322222222 11235799999999999999999999999999999999987754
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=261.69 Aligned_cols=260 Identities=16% Similarity=0.143 Sum_probs=192.6
Q ss_pred cCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 311 KLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
..+....+.+|+.+.|.|.+.. .+.|+|++..+. ....
T Consensus 17 ~~~~~~~v~~G~~v~l~C~~~~---~i~W~~~~~~~~-----~~~~---------------------------------- 54 (290)
T 2o26_X 17 PAQSELIVEAGDTLSLTCIDPD---FVRWTFKTYFNE-----MVEN---------------------------------- 54 (290)
T ss_dssp SCSSEEEEETTSCEEEEEECTT---EEEEEEECSSSC-----EEEE----------------------------------
T ss_pred CCCCeEEEcCCCcEEEEECCCC---cEEEecCCccee-----eecC----------------------------------
Confidence 4556667788999999999933 899999987761 0011
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.|.| |. ..
T Consensus 55 ------------------------------~~~~L~i~~~~~~d~G~Y~C~~~n--g~-~~------------------- 82 (290)
T 2o26_X 55 ------------------------------KKNEWIQEKAEATRTGTYTCSNSN--GL-TS------------------- 82 (290)
T ss_dssp ------------------------------CSSEEEETTCCGGGCEEEEEEESS--SC-EE-------------------
T ss_pred ------------------------------CCceEEEeccCHHhCeEEEEEeeC--Cc-cE-------------------
Confidence 113588888999999999999999 33 22
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-CeeEE-eeCCee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-PEISW-MKNGAE 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W-~~~g~~ 548 (803)
.+.|.|..+|... .......+.+|+.+.|.|.+.+ |. +.+.| +++|..
T Consensus 83 -----------------------~~~l~V~~~~~~~------~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~ 132 (290)
T 2o26_X 83 -----------------------SIYVFVRDPAKLF------LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKS 132 (290)
T ss_dssp -----------------------EEEEEEECSSCCB------CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCC
T ss_pred -----------------------EEEEEEeCCCccc------ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcC
Confidence 3445555555432 1123567789999999999996 87 89999 578888
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCe-EEEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQY 626 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~ 626 (803)
+..+.++.+.. ...|.|.++..+|+| .|+|.|.|..+.. +..+.|.|...
T Consensus 133 l~~~~~~~~~~---~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~------------------------- 184 (290)
T 2o26_X 133 LPTDLTFVPNP---KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA------------------------- 184 (290)
T ss_dssp CCTTCEEEEET---TTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECC-------------------------
T ss_pred CCCCCceeeCC---CCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeC-------------------------
Confidence 87765544332 247999999999999 9999999985442 23466666421
Q ss_pred EEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCc-eE
Q psy2776 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IV 705 (803)
Q Consensus 627 ~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~ 705 (803)
...+|.+...+....+.+|+.+.|.|.+.|.|.|. +.
T Consensus 185 ------------------------------------------~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~ 222 (290)
T 2o26_X 185 ------------------------------------------IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222 (290)
T ss_dssp ------------------------------------------CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEE
T ss_pred ------------------------------------------CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEE
Confidence 12277787777777899999999999999999997 99
Q ss_pred EeeCCeec----cCCCCeEEE---eeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 706 WFRNNKPL----LSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 706 W~~~~~~l----~~~~~~~~~---~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|+++|..+ ......... .......|.|.++ +.+|+|.|+|.|.|.+|..+..+.|.|..
T Consensus 223 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 223 WLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA-RVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSC-CSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EecCCCCCccceeecccccccCceeeEEEEEEEEcCC-CcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 99998873 333322222 1234568999999 78999999999999999999988888853
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=261.84 Aligned_cols=323 Identities=19% Similarity=0.235 Sum_probs=222.2
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Ceeccc------eeEEEe--cCeeEEEEecCCCCcceEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSLIKG------RNITYE--NNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~~~~------~~~~~~--~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+|.|.. +.+..+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+.. .++... .....|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 356665 5667788999999999999999999999999 776643 233333 35679999999999999999
Q ss_pred EEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 214 CKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 214 C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
|.|.|..|....++.|.|..+|..
T Consensus 80 C~a~n~~g~~~~~~~l~V~~~P~~-------------------------------------------------------- 103 (389)
T 2jll_A 80 CEAASRIGGHQKSMYLDIEYAPKF-------------------------------------------------------- 103 (389)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEEE--------------------------------------------------------
T ss_pred EEEEeCCCCcceEEEEEEEeCCEE--------------------------------------------------------
Confidence 999999999888888988866411
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc--eeEEEEcCceeEEEEeecCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQ 370 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~l~i~~~~~ 370 (803)
. ..+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.... ++.+..+
T Consensus 104 ---------------~-~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~------------- 154 (389)
T 2jll_A 104 ---------------I-SNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST------------- 154 (389)
T ss_dssp ---------------C-CSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC-------------
T ss_pred ---------------e-cCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc-------------
Confidence 0 01222345679999999999 89999999999999887543 2222221
Q ss_pred CCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeee
Q psy2776 371 DDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450 (803)
Q Consensus 371 ~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~ 450 (803)
.....|.|.++..+|+|.|+|.|.|..|...
T Consensus 155 -------------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 185 (389)
T 2jll_A 155 -------------------------------------------------GRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185 (389)
T ss_dssp -------------------------------------------------SSCEEEEECCCSTTSSEEEEEEEEETTEEEE
T ss_pred -------------------------------------------------CCEEEEEECCCChhhCEEEEEEEEcCCCcEE
Confidence 2345688899999999999999999999876
Q ss_pred eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEE
Q psy2776 451 TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEV 530 (803)
Q Consensus 451 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C 530 (803)
. .+.+.+..+|..|... ......+..+.|.|
T Consensus 186 ~------------------------------------------~~~l~v~~~P~~P~~~-------~~~~~~~~~~~l~w 216 (389)
T 2jll_A 186 Q------------------------------------------EYILALADVPSSPYGV-------KIIELSQTTAKVSF 216 (389)
T ss_dssp E------------------------------------------EEEEEECCCCCCCEEE-------EEEEECSSCEEEEE
T ss_pred E------------------------------------------EEEEEecCCCCCCcce-------EEeeccCCEEEEEE
Confidence 6 3444455555544211 11122356788999
Q ss_pred EEc----CcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee----
Q psy2776 531 KYF----GFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG---- 600 (803)
Q Consensus 531 ~~~----g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~---- 600 (803)
... |.|.. .+.|.+++.... ..+........|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus 217 ~~p~~~~g~pi~~y~v~~~~~~~~~~----~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~ 292 (389)
T 2jll_A 217 NKPDSHGGVPIHHYQVDVKEVASEIW----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR 292 (389)
T ss_dssp ECCSCCTTSCEEEEEEEEEETTCSCC----EEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCC
T ss_pred eCCCCCCCcceEEEEEEEEECCCccc----EEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCC
Confidence 742 22332 467887764211 1222333446899999999999999999999988754333333222
Q ss_pred eE----eE----eeecccccEEE-------------------------eeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 601 YI----IQ----QQEKNSLKFTK-------------------------VATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 601 ~p----~~----~~~~~~~~w~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
+| +. ......+.|.. ..........+++.+|.+...|.|+++|.|..
T Consensus 293 ~p~~p~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~ 372 (389)
T 2jll_A 293 EPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRL 372 (389)
T ss_dssp CCCCCCEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-C
T ss_pred CCCCCccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCC
Confidence 11 00 00111222322 22223345678999999999999999999999
Q ss_pred CCCCCcc
Q psy2776 648 GLGPEAT 654 (803)
Q Consensus 648 g~~~~s~ 654 (803)
|.++++.
T Consensus 373 G~s~~s~ 379 (389)
T 2jll_A 373 GYSEPTV 379 (389)
T ss_dssp CBCCCEE
T ss_pred cCCCcee
Confidence 9987664
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=267.98 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=194.3
Q ss_pred eeeeccccceeEEEEe-cCC-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 315 VTLVPHLGDATFQVEL-SSP-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
...+.+|+.+.|.|.+ +.| .+.+.|+|+|..+..... .
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~-----~----------------------------------- 53 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-----Q----------------------------------- 53 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCC-----T-----------------------------------
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccc-----c-----------------------------------
Confidence 4566789999999999 665 789999999864421100 0
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
+.++...+ ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 54 --------------------~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~-------------------- 91 (315)
T 1itb_B 54 --------------------ASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIK-------------------- 91 (315)
T ss_dssp --------------------TSSSEECS--SBEECTTCCGGGCSCCEECCCSSSCCCCEE--------------------
T ss_pred --------------------CCcEeccC--CeEEECCCChhhCEEEEEEEeCCceEEEEE--------------------
Confidence 00011111 148899999999999999999987655442
Q ss_pred cCCchhhhhcccccccccccceeeecc-CCCCCCccceeeeccccceEEeecceeEEEEEE------cCcCCCeeEEeeC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQI-QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY------FGFPRPEISWMKN 545 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v-~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~------~g~p~~~v~W~~~ 545 (803)
+.+.+ ..+|.+... ........+.+|+.+.|.|.+ .|.|.+.+.|+|+
T Consensus 92 ----------------------~~v~v~~~~p~~~~~---~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~ 146 (315)
T 1itb_B 92 ----------------------ISAKFVENEPNLCYN---AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD 146 (315)
T ss_dssp ----------------------CCCEEECCCTTSSSC---GGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEET
T ss_pred ----------------------EEEEEeCCCCCcccc---cccccceEEecCCCeEEEEecccccccCCCCCCEEEEEEC
Confidence 11221 123322110 011123568889999999998 8999999999999
Q ss_pred CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE-cCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCC
Q psy2776 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT-NAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDP 621 (803)
Q Consensus 546 g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~-n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~ 621 (803)
|..+..+... +.. .+..|.|.++..+|+|.|+|.|. |..|.. +..+.|.+...
T Consensus 147 ~~~l~~~~~~-~~~--~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~-------------------- 203 (315)
T 1itb_B 147 CKPLLLDNIH-FSG--VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE-------------------- 203 (315)
T ss_dssp TEECCCCSSS-EEE--ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC--------------------
T ss_pred CEECCCccce-Eee--cCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecC--------------------
Confidence 9998654322 222 13489999999999999999999 788876 33333433221
Q ss_pred ccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecC
Q psy2776 622 STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASP 700 (803)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p 700 (803)
....+|.+...+.. ..+.+|+.+.|.|.+.|.|
T Consensus 204 ----------------------------------------------~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P 237 (315)
T 1itb_B 204 ----------------------------------------------NKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237 (315)
T ss_dssp ----------------------------------------------CCCCCCEECSCCSEEEECCSSSCEEEEEEEEECT
T ss_pred ----------------------------------------------CCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCC
Confidence 01236777666554 5789999999999999999
Q ss_pred CCceEEeeCCeeccCCCCeEEE-----ee-------CceEEEEEecCCCCCC-ceeEEEEEEccCcceeeeEEEEEE
Q psy2776 701 APSIVWFRNNKPLLSSPKKREI-----FD-------GENIILELKEADSETD-AGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 701 ~~~v~W~~~~~~l~~~~~~~~~-----~~-------~~~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|.+.|+++|.++..+.+.... .. .....|.|.++ +.+| +|.|+|.|.|.+|.++.++.|.|+
T Consensus 238 ~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 238 SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI-ESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp TSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSC-CGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred CCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeec-CHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 9999999999999876542221 11 12458999999 7899 999999999999999999999874
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=259.43 Aligned_cols=295 Identities=16% Similarity=0.204 Sum_probs=194.7
Q ss_pred CeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccc-ee--EEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 153 DSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKG-RN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~-~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
.+.+.+|+.+.|.|... +.|.+.+.|+|++..+.. .+ +...+....|.|.+++.+|+|.|+|.+.|..|... ++.
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~ 88 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL 88 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence 35677999999998876 689999999999998873 23 33344668999999999999999999999988544 555
Q ss_pred EEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccc
Q psy2776 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEF 308 (803)
Q Consensus 229 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (803)
+.|........... ....+.+
T Consensus 89 l~v~~~~~~~~~~~-----------------------------------------------------------~~~~p~~ 109 (312)
T 2y23_A 89 IDEEELKRLLALSH-----------------------------------------------------------EHKFPTV 109 (312)
T ss_dssp ECHHHHHHHHHHHH-----------------------------------------------------------HHHSCBC
T ss_pred EEEeeeeeeecccc-----------------------------------------------------------cCCCCcc
Confidence 55543210000000 0000001
Q ss_pred cccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccc
Q psy2776 309 LSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 309 ~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
....+....+.+|+.+.|.|.+ +.|.+.+.|+++|.++..+.++.+..+..
T Consensus 110 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~--------------------------- 162 (312)
T 2y23_A 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN--------------------------- 162 (312)
T ss_dssp CEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT---------------------------
T ss_pred ccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC---------------------------
Confidence 1111113455679999999999 57999999999999988765554443221
Q ss_pred eeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEee
Q psy2776 387 SKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSL 466 (803)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~ 466 (803)
.+...|.|.+++.+|+|.|+|.+.+..+..... +.+
T Consensus 163 ---------------------------------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~-----------~~~ 198 (312)
T 2y23_A 163 ---------------------------------TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST-----------VVL 198 (312)
T ss_dssp ---------------------------------TTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE-----------EEE
T ss_pred ---------------------------------CCEEEEEEccCCcccCEeEEEEEEeCCceEEEE-----------EEE
Confidence 233458888889999999999998754443331 111
Q ss_pred eccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-eeEEeeC
Q psy2776 467 RKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKN 545 (803)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~ 545 (803)
.... +...+..... +...+....+|.+. .. ....+.+|+.+.|.|.+.|.|.+ .+.|+|+
T Consensus 199 ~~~~------~~~~~~~~~~------~~~~~~~~~~p~~~------~~-~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~ 259 (312)
T 2y23_A 199 VGDV------FKKLQKEAEF------QRQEWIRKQGPHFV------EY-LSWEVTGECNVLLKCKVANIKKETHIVWYKD 259 (312)
T ss_dssp CTHH------HHHHHHHHHH------HHHHHHHHHSSEEE------EE-EEEEEETTTEEEEEEEEESCCSSCEEEEEET
T ss_pred cchh------hhhhcccccc------cccchhhccCCcee------ec-ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeC
Confidence 0000 0000000000 00000111122211 11 12568899999999999999998 9999999
Q ss_pred CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 546 g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|..+..+.++.+. .+...|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 260 g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 260 EREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp TEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred CEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 9999866555544 346899999999999999999999999999999998764
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-29 Score=261.57 Aligned_cols=223 Identities=18% Similarity=0.252 Sum_probs=159.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCC-ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNE-AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~-~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+..+|+|.+++.+|+|.|+|.+.+. .+.... .+.|.+
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~------------------------------------------~~~l~v 114 (313)
T 4fqp_A 77 RNASLRMFGLRVEDEGNYTCLFVTFPQGSRSV------------------------------------------DIWLRV 114 (313)
T ss_dssp CBCCEEECSCCGGGCEEEEEEEECSSSCEEEE------------------------------------------EEEECC
T ss_pred cceEEEECcCChhhCEEEEEEEeeccCcceee------------------------------------------eeeeee
Confidence 3456999999999999999988643 343333 445555
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCCCcEEEEecCC---eEEEEEeeeccCc
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDSKACRIFIDEE---TSTIAIYSVVRAD 575 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~~~~~~~~~~~---~~~L~i~~v~~~d 575 (803)
..+|...... ....+..|+.+.+.|.+. +.|.+.+.|++++..+...........+. .+.|.|.++..+|
T Consensus 115 ~~~P~~~~~~------~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d 188 (313)
T 4fqp_A 115 LAKPQNTAEV------QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188 (313)
T ss_dssp BBCCEEEEEE------CCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGT
T ss_pred ccCCcceecc------cceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeeccccccc
Confidence 5555432211 234456788899999864 78999999999998776432222111111 2569999999999
Q ss_pred CeEEEEEEEcCCCCeEE--EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 576 TSTYTVTATNAAGSTSL--DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~--s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|+|.|.|..+.... ++.|.|..
T Consensus 189 ~g~Y~C~a~n~~~~~~~~~~~~l~V~~----------------------------------------------------- 215 (313)
T 4fqp_A 189 GKNVTCKVEHESFEKPQLLTVNLTVYY----------------------------------------------------- 215 (313)
T ss_dssp TCEEEEEEECTTSSSCEEEEEECCBCE-----------------------------------------------------
T ss_pred CeeEEEEEEccCcCccceeeeeccccc-----------------------------------------------------
Confidence 99999999998776544 44455544
Q ss_pred cceeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILE 731 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~ 731 (803)
+|.+. .......+.+|+.++|.|.+.|.|.| .|.|+|+|.++.... ..++. +|.
T Consensus 216 ------------------~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~----~~~~~--~L~ 271 (313)
T 4fqp_A 216 ------------------PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA----VAQGA--QLL 271 (313)
T ss_dssp ------------------EEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----EEETT--EEE
T ss_pred ------------------CCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce----EEeCC--EEE
Confidence 33332 23334556778999999999999999 699999999885542 22333 699
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCC
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~ 772 (803)
|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.. .||.
T Consensus 272 i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~---~PP~ 308 (313)
T 4fqp_A 272 IRPV-DKPINTTLICNVTNALGARQAELTVQVKE---GPPH 308 (313)
T ss_dssp ECCC-SSCCEEEEEEEEECSSCEEEEEEEEEEEC---CC--
T ss_pred ECcC-ChhhCEEEEEEEEeCCCcEEEEEEEEEEe---CCCC
Confidence 9999 78999999999999999999999999863 4554
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=264.45 Aligned_cols=263 Identities=15% Similarity=0.130 Sum_probs=190.0
Q ss_pred eeeeccccceeEEEEe-cC---------CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 315 VTLVPHLGDATFQVEL-SS---------PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~---------p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
...+.+|+.+.|.|.+ +. |.+.+.|+|++..+....+. ..
T Consensus 38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~---------------------------- 87 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VK---------------------------- 87 (329)
T ss_dssp EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EE----------------------------
T ss_pred eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--ee----------------------------
Confidence 4457789999999998 53 66899999998776532221 11
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCCCceeE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGLPLSIV 463 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~~~~~~ 463 (803)
...|.|.+++.+|+| .|+|.|.|..|.....
T Consensus 88 -------------------------------------~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~----------- 119 (329)
T 3oq3_B 88 -------------------------------------NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG----------- 119 (329)
T ss_dssp -------------------------------------TTEEEESSCCGGGGGCCEEEEEECTTSCEEEE-----------
T ss_pred -------------------------------------cceEEEcCCChHhCCCcEEEEEEeCCCceeeE-----------
Confidence 124888889999999 8999999988764442
Q ss_pred EeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC-CCeeEE
Q psy2776 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP-RPEISW 542 (803)
Q Consensus 464 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p-~~~v~W 542 (803)
.+.+.+..+|...... ....+.+|+.+.|.|.+.|.| .+.+.|
T Consensus 120 ------------------------------~~~~v~~~~p~~~~~~------~~~~~~~G~~v~L~C~~~g~p~~~~i~W 163 (329)
T 3oq3_B 120 ------------------------------IVRSHIRKPPSCIPET------YELGTHDKYGIDLYCGILYAKHYNNITW 163 (329)
T ss_dssp ------------------------------EEEEEECCCCSCEEEE------EETTSSTTTCEEEECCCCSCCCCCEEEE
T ss_pred ------------------------------EEEEEEcCCCcEeccc------cceEEeCCCcEEEEeccCCCCCCceEEE
Confidence 1112233344321111 112356799999999999999 899999
Q ss_pred eeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcC--CCCeEEE----EEEEEeeeEeEeeecccccEEE
Q psy2776 543 MKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNA--AGSTSLD----LSLQVLGYIIQQQEKNSLKFTK 615 (803)
Q Consensus 543 ~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~--~g~~s~s----~~l~V~~~p~~~~~~~~~~w~~ 615 (803)
+|+|..+... .++... +..|.|.++..+|+|.|+|.|.|. .|..... +.|.|..+|.
T Consensus 164 ~k~~~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~------------ 227 (329)
T 3oq3_B 164 YKNNQELIIDGTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQD------------ 227 (329)
T ss_dssp EETTEECCCSSSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCC------------
T ss_pred EECCccCCCCCceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCC------------
Confidence 9999988643 333322 368999999999999999999987 6554443 5666654320
Q ss_pred eeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEE
Q psy2776 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695 (803)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~ 695 (803)
...| ++ .+....+.+|+.+.|.|.
T Consensus 228 ------------------------------------------------------~~~~-~~-~~~~~~v~~G~~~~l~C~ 251 (329)
T 3oq3_B 228 ------------------------------------------------------HRFK-LI-LDPKINVTIGEPANITCT 251 (329)
T ss_dssp ------------------------------------------------------CCEE-EE-CCSEEEECTTSCEEEEEE
T ss_pred ------------------------------------------------------CCCc-ee-cCCeeEEecCCCEEEEEE
Confidence 0012 22 455678899999999999
Q ss_pred EeecC---CC-ceEEeeCCeecc-CCCCeEEE--eeC--ceEEEEEecCCCCCCce-eEEEEEEccCcceeeeEEEEEE
Q psy2776 696 VKASP---AP-SIVWFRNNKPLL-SSPKKREI--FDG--ENIILELKEADSETDAG-DYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 696 ~~g~p---~~-~v~W~~~~~~l~-~~~~~~~~--~~~--~~~~L~i~~v~~~~D~G-~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.| .+ .+.|+++|..+. .+.+.... ..+ ....|.|.++ +.+|+| .|+|.|.|.+|..+.++.|.|+
T Consensus 252 ~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV-TEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329 (329)
T ss_dssp EEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSC-CGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEec-cHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence 99998 77 889999998853 33332222 122 4578999999 789999 9999999999999999988873
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=257.54 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=170.8
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|.|.+++.+|+|.|+|.+.+..+.... .+.|.|..
T Consensus 50 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~------------------------------------------~~~l~V~~ 87 (289)
T 3ejj_X 50 GSTLTTRNATFKNTGTYRCTELEDPMAGST------------------------------------------TIHLYVKD 87 (289)
T ss_dssp CCEEEESSCCGGGCEEEEEECCC-----CE------------------------------------------EEEEEECC
T ss_pred ccEEEEeeeccccCEEEEEEEeccCCccee------------------------------------------EEEEEEeC
Confidence 356889999999999999999988776443 55666766
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eEEee-CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEE
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y 579 (803)
+|... ........+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....++.+.. ...|.|.++..+|+|.|
T Consensus 88 ~~~~~-----~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y 159 (289)
T 3ejj_X 88 PAHSW-----NLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP---WRGFIIRKAKVLDSNTY 159 (289)
T ss_dssp SSCSE-----EESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET---TTEEEESSCCGGGCEEE
T ss_pred CCcce-----ecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC---CCCEEEeecccccCEEE
Confidence 66531 1122467789999999999999987765 99976 677776666655432 34699999999999999
Q ss_pred EEEEE-cCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceee
Q psy2776 580 TVTAT-NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658 (803)
Q Consensus 580 ~C~a~-n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~ 658 (803)
+|.|. |..+..+..+.|.|...+
T Consensus 160 ~C~a~~~~~~~~~~~~~l~V~~~~-------------------------------------------------------- 183 (289)
T 3ejj_X 160 VCKTMVNGRESTSTGIWLKVNRVH-------------------------------------------------------- 183 (289)
T ss_dssp EEEEEETTEEEECCCEEEEEESSC--------------------------------------------------------
T ss_pred EEEEEeCCCccccccEEEEEEECC--------------------------------------------------------
Confidence 99999 555666677777775311
Q ss_pred eeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEe--eCceEEEEEecC
Q psy2776 659 ALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIF--DGENIILELKEA 735 (803)
Q Consensus 659 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~--~~~~~~L~i~~v 735 (803)
..+|.+...+....+.+|+.+.|.|.+.| .|.+.+.|++++..+.......... ......|.|.++
T Consensus 184 -----------~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 252 (289)
T 3ejj_X 184 -----------PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV 252 (289)
T ss_dssp -----------CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSC
T ss_pred -----------CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEee
Confidence 12677877777788889999999999998 7999999999999886543221111 122568999999
Q ss_pred CCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 736 DSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.+|+|.|+|.|.|.+|.++.++.|.+.
T Consensus 253 -~~~d~G~Y~C~a~N~~G~~~~s~~L~~~ 280 (289)
T 3ejj_X 253 -DFQDAGIYSCVASNDVGTRTATMNFQVV 280 (289)
T ss_dssp -CSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred -cccCCEEEEEEEEcCCCCccccEEEEEE
Confidence 7999999999999999999999999984
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=273.07 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=137.7
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
.|.|.+++.+|+|.|+|.|.|..+.... .+.|.|..+|
T Consensus 80 ~L~i~~~~~~D~G~Y~C~a~n~~~~~~~------------------------------------------~~~l~V~~~~ 117 (349)
T 4dep_C 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKV------------------------------------------AFPLEVVQKD 117 (349)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEEE------------------------------------------EEEEEEECCC
T ss_pred EEEEccCChhhCEEEEEEEecCCceEEE------------------------------------------EEEEEEecCC
Confidence 5899999999999999999998777665 3334444433
Q ss_pred CCccceeeeccccceEEeecceeEEEEEE-----cCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKY-----FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-----~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
....... .......+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+....++. . .+..|.|.++..+|+|.
T Consensus 118 ~~~~~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~--~--~~~~L~i~~v~~~d~G~ 191 (349)
T 4dep_C 118 SCFNSPM--KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--P--EGMNLSFLIALISNNGN 191 (349)
T ss_dssp TTSCCSC--CCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE--E--ETTEEEEESCCGGGCEE
T ss_pred cccCccc--ccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee--e--cCCEEEEeeeeecCCcE
Confidence 2211111 01124567889999999984 778999999999999886543332 2 23679999999999999
Q ss_pred EEEEEEcCC-CCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcc
Q psy2776 579 YTVTATNAA-GST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654 (803)
Q Consensus 579 Y~C~a~n~~-g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~ 654 (803)
|+|.|.|.. |.. +..+.|.|...+
T Consensus 192 Y~C~a~n~~~g~~~~~~~~~~l~v~~~~---------------------------------------------------- 219 (349)
T 4dep_C 192 YTCVVTYPENGRTFHLTRTLTVKVVGSP---------------------------------------------------- 219 (349)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEECCG----------------------------------------------------
T ss_pred EEEEEEEeeCCEEEEEEEEEEEEEEccC----------------------------------------------------
Confidence 999999987 544 566666664421
Q ss_pred ceeeeeeecccCCCCCCCCeeEecccee--EEecCCeEEEEEEEe----ecCCCceEEeeCCeeccC-CCCeEEEe----
Q psy2776 655 TELVALATHATLGSPGQAPLFIERFEEK--TVKEKGTIRLMAKVK----ASPAPSIVWFRNNKPLLS-SPKKREIF---- 723 (803)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~v~~g~~v~L~C~~~----g~p~~~v~W~~~~~~l~~-~~~~~~~~---- 723 (803)
....+|.+....... .+.+|+.+.|.|.+. |.|.|.+.|+++|..+.. +.++.+..
T Consensus 220 -------------~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~ 286 (349)
T 4dep_C 220 -------------KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISH 286 (349)
T ss_dssp -------------GGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEEC
T ss_pred -------------CCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceee
Confidence 001156665555433 788999999999999 578999999999998865 33322211
Q ss_pred ---eC--ceEEEEEecCCCCCCc-eeEEEEEEccCcceeeeEEEEEEe
Q psy2776 724 ---DG--ENIILELKEADSETDA-GDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 724 ---~~--~~~~L~i~~v~~~~D~-G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+ ...+|.|.++ +.+|+ |.|+|.|.|.+|..+..+.|.|++
T Consensus 287 ~~~~~~~~~~~L~i~~v-~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 287 SRTEDETRTQILSIKKV-TSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CTTCCEEEEECC--------------CEEEEECSSCEEEEECC-----
T ss_pred ecCCCcEEEEEEEEeec-cHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 11 2445999999 78999 999999999999999999999854
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=274.14 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=203.1
Q ss_pred CCceeeeccccceeEEEEe--------cCCceeeEEeecCeecc--ccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 312 LPSVTLVPHLGDATFQVEL--------SSPDIQVKWLKKGKEIK--ESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~--------~~p~~~i~W~~~g~~l~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+. ......+
T Consensus 24 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~--------------------------- 76 (339)
T 3o4o_C 24 HYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM--------------------------- 76 (339)
T ss_dssp CSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCE---------------------------
T ss_pred CceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccE---------------------------
Confidence 3456667789999999998 77889999999987742 2111111
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
...+ ..|.|.+++.+|+|.|+|.+.|..|....
T Consensus 77 -----------------------------------~~~~--~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~---------- 109 (339)
T 3o4o_C 77 -----------------------------------WAQD--GALWLLPALQEDSGTYVCTTRNASYCDKM---------- 109 (339)
T ss_dssp -----------------------------------EEET--TEEEESSBCTTCCEEEECCEEETTEEEEE----------
T ss_pred -----------------------------------EeeC--CeEEECCCCcccCEEEEEEEECCcceEEE----------
Confidence 1111 24889999999999999999998876555
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEE-----EcCcC
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK-----YFGFP 536 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~-----~~g~p 536 (803)
.+.|.|..+|....... .....+.+|+.+.|.|. +.|.|
T Consensus 110 --------------------------------~~~l~V~~~~~~~~~~~----~~~~~~~~g~~v~l~C~~~~~~~~g~p 153 (339)
T 3o4o_C 110 --------------------------------SIELRVFENTDAFLPFI----SYPQILTLSTSGVLVCPDLSEFTRDKT 153 (339)
T ss_dssp --------------------------------EEEEEEECSCGGGHHHH----CEEEEEETTSCEEEECCSCTTTCCSSS
T ss_pred --------------------------------EEEEEEEcCCCcccccc----ccceEEECCCCEEEEecCCcccccCCC
Confidence 44555555443321111 11346789999999999 88999
Q ss_pred CCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC----eEEEEEEEEeeeEeEeeecccc
Q psy2776 537 RPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS----TSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 537 ~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~----~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
.+.+.|+|+|..+... .++.+ ..+...|.|.++..+|+|.|+|.|.|..|. .+.++.|.|...+
T Consensus 154 ~~~v~W~k~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~--------- 222 (339)
T 3o4o_C 154 DVKIQWYKDSLLLDKDNEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK--------- 222 (339)
T ss_dssp CCCBCCEESSCBCCTTCSSEEE--CTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC---------
T ss_pred CceEEEecCCeeCCCCCceeEE--cCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC---------
Confidence 9999999999988765 33332 233458999999999999999999998874 5667777775532
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
...+|.++..+....+.+|+.+.
T Consensus 223 ---------------------------------------------------------~~~~P~i~~~~~~~~v~~G~~v~ 245 (339)
T 3o4o_C 223 ---------------------------------------------------------EETIPVIISPLKTISASLGSRLT 245 (339)
T ss_dssp ---------------------------------------------------------CCCCCEECCCSCCCCCCCCSCCC
T ss_pred ---------------------------------------------------------CCCCCEEecCCceeEeccCCCEE
Confidence 11267777777777899999999
Q ss_pred EEEEE---eecC-CCceEEeeCCeeccC---------CCCeEEEeeCc---eEEEEEecCCCCCCc-eeEEEEEEccCcc
Q psy2776 692 LMAKV---KASP-APSIVWFRNNKPLLS---------SPKKREIFDGE---NIILELKEADSETDA-GDYKVVATNELGS 754 (803)
Q Consensus 692 L~C~~---~g~p-~~~v~W~~~~~~l~~---------~~~~~~~~~~~---~~~L~i~~v~~~~D~-G~Y~C~a~N~~G~ 754 (803)
|.|.+ .|.| .+.+.|+++|.++.. +.++....++. ...|.|.++ +.+|+ |.|+|.|.|.+|.
T Consensus 246 L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v-~~~d~~G~Y~C~a~N~~G~ 324 (339)
T 3o4o_C 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV-TREDLHMDFKCVVHNTLSF 324 (339)
T ss_dssp CCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSS-CCCSCCCCCEEEEEETTEE
T ss_pred EEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEe-chhhcCccEEEEEEeccCc
Confidence 99999 8999 889999999987642 22232222333 226999999 78997 9999999999999
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
+++.+.+.+.
T Consensus 325 ~~~~~~~~~~ 334 (339)
T 3o4o_C 325 QTLRTTVKEH 334 (339)
T ss_dssp ECCBCCCCC-
T ss_pred eEEEEEhhHh
Confidence 9999988763
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-27 Score=264.37 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=114.2
Q ss_pred eEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 518 QRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+.+|+.+.|+|.+.|.++ ..++|+|+|..+...... ......+ .+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 307 ~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~ 386 (512)
T 1zvo_C 307 QDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP 386 (512)
T ss_pred HHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence 34668999999999998744 389999999886622111 1111111 257999999999999999999998776
Q ss_pred eEEEEEEEEe-eeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 590 TSLDLSLQVL-GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 590 ~s~s~~l~V~-~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
.. ...+... .. .
T Consensus 387 ~~-~~~~~~~~~~------------------------------------------------------------------~ 399 (512)
T 1zvo_C 387 PQ-RLMALREPAA------------------------------------------------------------------Q 399 (512)
T ss_pred CC-ceeEEeecCC------------------------------------------------------------------C
Confidence 43 2222210 00 0
Q ss_pred CCCCCeeEeccceeEEecCCeEE-EEEEEeecCCC--ceEEeeCCeeccCCCCe----EEEeeCc-e---EEEEEecCCC
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIR-LMAKVKASPAP--SIVWFRNNKPLLSSPKK----REIFDGE-N---IILELKEADS 737 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~-L~C~~~g~p~~--~v~W~~~~~~l~~~~~~----~~~~~~~-~---~~L~i~~v~~ 737 (803)
...+|.+...+... .|+.+. |.|.+.|++++ .+.|+|||.++..+... ....++. . ..|.|... .
T Consensus 400 ~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~-~ 475 (512)
T 1zvo_C 400 APVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAP-P 475 (512)
T ss_pred CCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECch-h
Confidence 01134443332222 789999 99999997544 68999999998654321 1122332 2 35666665 4
Q ss_pred CCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 738 ETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+|.|.|+|+|.|........+...+++
T Consensus 476 ~~~~g~YtC~v~h~~l~~~~~~~~~~~v 503 (512)
T 1zvo_C 476 SPQPATYTCVVSHEDSRTLLNASRSLEV 503 (512)
T ss_pred cCCCCeEEEEEEecCCCCceEEEEEEEe
Confidence 5679999999999987765555555543
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=259.80 Aligned_cols=271 Identities=17% Similarity=0.187 Sum_probs=189.0
Q ss_pred cCcCeeeecCCcEEEEEEECccCCC-----eeEEEEcCeeccc--------------eeEEEe-------cCeeEEEEec
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTP-----DIKWYKDDSLIKG--------------RNITYE-------NNVARFTVVN 203 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p-----~i~W~~~~~~~~~--------------~~~~~~-------~~~~~L~i~~ 203 (803)
.|.++.+..|++++|.|.+.+.+.+ .+.|+|++..... .+..+. ....+|.|.+
T Consensus 6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 85 (313)
T 4fqp_A 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG 85 (313)
T ss_dssp CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence 4566777899999999999876665 4899998753221 111111 1235799999
Q ss_pred CCCCcceEEEEEEEcC-CcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 204 CSESSEGRYTCKATNE-AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~-~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
++.+|+|.|+|.+.+. .+.....+.|.+...|... .
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~-----~-------------------------------------- 122 (313)
T 4fqp_A 86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT-----A-------------------------------------- 122 (313)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEE-----E--------------------------------------
T ss_pred CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcce-----e--------------------------------------
Confidence 9999999999988643 4445555556554442100 0
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCce
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQ 360 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~ 360 (803)
.+....+..++.+.+.|.+ +.|.+.+.|++++..+..........++
T Consensus 123 -----------------------------~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~-- 171 (313)
T 4fqp_A 123 -----------------------------EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG-- 171 (313)
T ss_dssp -----------------------------EECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTT--
T ss_pred -----------------------------cccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeeccc--
Confidence 0011223457778889987 7899999999998877653322111111
Q ss_pred eEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEE
Q psy2776 361 RKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 440 (803)
Q Consensus 361 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 440 (803)
.|.. ...|.|.+...+|.|.|+|
T Consensus 172 --------------~~~~-------------------------------------------~s~l~i~~~~~~d~g~Y~C 194 (313)
T 4fqp_A 172 --------------TVTV-------------------------------------------TSLWILVPSSQVDGKNVTC 194 (313)
T ss_dssp --------------CEEE-------------------------------------------EEEEEECCCGGGTTCEEEE
T ss_pred --------------cccc-------------------------------------------ceeeeecccccccCeeEEE
Confidence 1110 1247888889999999999
Q ss_pred EeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEE
Q psy2776 441 KATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520 (803)
Q Consensus 441 ~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v 520 (803)
.|.|..+...... .+.|.|..+|.+. ........+
T Consensus 195 ~a~n~~~~~~~~~----------------------------------------~~~l~V~~~P~v~-----~~~~~~~~~ 229 (313)
T 4fqp_A 195 KVEHESFEKPQLL----------------------------------------TVNLTVYYPPEVS-----ISGYDNNWY 229 (313)
T ss_dssp EEECTTSSSCEEE----------------------------------------EEECCBCEEEEEE-----EECCCSCEE
T ss_pred EEEccCcCcccee----------------------------------------eeecccccCCccc-----cccccceee
Confidence 9999876655432 4555666666421 112234556
Q ss_pred eecceeEEEEEEcCcCCC-eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 521 SVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
..|+.+.|.|.+.|+|.| .++|+|+|..+..... . .+.+|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 230 ~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~---~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 303 (313)
T 4fqp_A 230 LGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAV---A---QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK 303 (313)
T ss_dssp TTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE---E---ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCCCeEEEEEEecCCCCCcEEEEEECCEECCCceE---E---eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 778999999999999998 6999999998875421 1 13579999999999999999999999999999999998
Q ss_pred eeE
Q psy2776 600 GYI 602 (803)
Q Consensus 600 ~~p 602 (803)
..|
T Consensus 304 ~~P 306 (313)
T 4fqp_A 304 EGP 306 (313)
T ss_dssp CCC
T ss_pred eCC
Confidence 665
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=251.64 Aligned_cols=273 Identities=17% Similarity=0.213 Sum_probs=190.2
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
.+|.+...+....+.+|+.+.|.|.+.+ .+.|++++.... ..........|.|.+++.+|+|.|+|.+.|..+.
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 76 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW--TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA 76 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS--EECCCSSCCEEEESSCCGGGCEEEEEECCC----
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE--EEeccCCccEEEEeeeccccCEEEEEEEeccCCc
Confidence 4677777778888999999999999987 499998764322 2233455678999999999999999999999888
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
...++.|.|...+..
T Consensus 77 ~~~~~~l~V~~~~~~----------------------------------------------------------------- 91 (289)
T 3ejj_X 77 GSTTIHLYVKDPAHS----------------------------------------------------------------- 91 (289)
T ss_dssp -CEEEEEEECCSSCS-----------------------------------------------------------------
T ss_pred ceeEEEEEEeCCCcc-----------------------------------------------------------------
Confidence 777888888765311
Q ss_pred CccccccccCCceeeeccccceeEEEEe-cCCcee-eEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ-VKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~-i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
+...+....+.+|+.+.|.|.+ +.+.+. +.|++ ++..+....++.+..++
T Consensus 92 ------~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--------------------- 144 (289)
T 3ejj_X 92 ------WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--------------------- 144 (289)
T ss_dssp ------EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT---------------------
T ss_pred ------eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC---------------------
Confidence 1112234456679999999999 555544 99986 67666554444332222
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee-CCceeeeeecccCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT-NEAGTAETRTMWPGL 458 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~-~~~g~~~~~~~~~~~ 458 (803)
.|.|.+++.+|+|.|+|.|. +..+....
T Consensus 145 --------------------------------------------~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~------- 173 (289)
T 3ejj_X 145 --------------------------------------------GFIIRKAKVLDSNTYVCKTMVNGRESTST------- 173 (289)
T ss_dssp --------------------------------------------EEEESSCCGGGCEEEEEEEEETTEEEECC-------
T ss_pred --------------------------------------------CEEEeecccccCEEEEEEEEeCCCccccc-------
Confidence 38888899999999999998 43333332
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcC-cC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FP 536 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p 536 (803)
.+.|.|...+ ..|.+... .....+.+|+.+.|.|.+.+ .|
T Consensus 174 -----------------------------------~~~l~V~~~~~~~p~i~~~---~~~~~~~~g~~~~l~C~~~~~~p 215 (289)
T 3ejj_X 174 -----------------------------------GIWLKVNRVHPEPPQIKLE---PSKLVRIRGEAAQIVCSATNAEV 215 (289)
T ss_dssp -----------------------------------CEEEEEESSCCCCCEEEEE---SSSEECCSSSCEEEEEEEEESSS
T ss_pred -----------------------------------cEEEEEEECCCCCCeEEec---CCceEEEeCCcEEEEEEeCCCCC
Confidence 3344443211 11222211 12455678999999999998 78
Q ss_pred CCeeEEeeCCeeecCCCcEEEEe--cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 537 RPEISWMKNGAEITDSKACRIFI--DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 537 ~~~v~W~~~g~~i~~~~~~~~~~--~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.+.|+++|..+.......... ....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.+...+
T Consensus 216 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 216 GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp CCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred ceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 89999999999887643322111 1125789999999999999999999999999999999987654
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=263.13 Aligned_cols=270 Identities=19% Similarity=0.230 Sum_probs=189.6
Q ss_pred cCeeeecCCcEEEEEEECccC-CCeeEEEEcCeecc-----ceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIK-----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p-~p~i~W~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
..+.+.+|+.+.|.|.+.+.| .+.+.|+|++..+. ..++...+ ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~ 90 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRI 90 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECS--SBEECTTCCGGGCSCCEECCCSSSCCCCE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccC--CeEEECCCChhhCEEEEEEEeCCceEEEE
Confidence 356788999999999999877 78999999986432 22333332 47999999999999999999999887665
Q ss_pred EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcc
Q psy2776 226 SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305 (803)
Q Consensus 226 s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (803)
...+.+...+ |.
T Consensus 91 ~~~v~v~~~~--------------------------------------------------------------------p~ 102 (315)
T 1itb_B 91 KISAKFVENE--------------------------------------------------------------------PN 102 (315)
T ss_dssp ECCCEEECCC--------------------------------------------------------------------TT
T ss_pred EEEEEEeCCC--------------------------------------------------------------------CC
Confidence 5555443321 11
Q ss_pred ccccccCCceeeeccccceeEEEEe-------cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-------SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-------~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
..+.........+..|+.+.|.|.+ +.|.+.+.|+|+|.++..+.......
T Consensus 103 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~---------------------- 160 (315)
T 1itb_B 103 LCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---------------------- 160 (315)
T ss_dssp SSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE----------------------
T ss_pred cccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec----------------------
Confidence 1111111123445679999999985 68889999999998886432211111
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee-CCceeeeeecccCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT-NEAGTAETRTMWPG 457 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~-~~~g~~~~~~~~~~ 457 (803)
...|.|.+++.+|+|.|+|.|. |..|.......
T Consensus 161 -------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~--- 194 (315)
T 1itb_B 161 -------------------------------------------KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITR--- 194 (315)
T ss_dssp -------------------------------------------TTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEE---
T ss_pred -------------------------------------------CceEEEEeceehhCcEEEEEEEcCCCCcEEEEEE---
Confidence 1148888899999999999999 67766643210
Q ss_pred CCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC-----CCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ-----SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 458 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
.+.+.+. .+|.+ .........+.+|+.+.|.|.+
T Consensus 195 ------------------------------------~~~~~~~~~~~~~~P~~-----~~~~~~~~~~~~g~~v~l~C~~ 233 (315)
T 1itb_B 195 ------------------------------------VIEFITLEENKPTRPVI-----VSPANETMEVDLGSQIQLICNV 233 (315)
T ss_dssp ------------------------------------EEEEEEECCCCCCCCEE-----CSCCSEEEECCSSSCEEEEEEE
T ss_pred ------------------------------------EEEEEEecCCCCCCCEE-----ecCCCCcEEEeCCCcEEEEEEE
Confidence 1111111 22221 1111112467899999999999
Q ss_pred cCcCCCeeEEeeCCeeecCCCcEEE----Eec--------CCeEEEEEeeeccCc-CeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 533 FGFPRPEISWMKNGAEITDSKACRI----FID--------EETSTIAIYSVVRAD-TSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 533 ~g~p~~~v~W~~~g~~i~~~~~~~~----~~~--------~~~~~L~i~~v~~~d-sG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
.|.|.|.+.|+++|..+........ ... ...+.|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus 234 ~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 234 TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp EECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred ecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 9999999999999999887543211 111 124589999999999 999999999999999999999874
Q ss_pred e
Q psy2776 600 G 600 (803)
Q Consensus 600 ~ 600 (803)
.
T Consensus 314 ~ 314 (315)
T 1itb_B 314 V 314 (315)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=270.68 Aligned_cols=295 Identities=22% Similarity=0.321 Sum_probs=134.4
Q ss_pred CcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCeeccce-eEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIKGR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
+.+..+.+|+.+.|.|.+.+. |.+.+.|+|++..+... ++.. ....|.|.+++.+|+|.|+|.+.|. |.....+.
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~ 91 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV--GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS 91 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe--ccceEEEeecccccCEEEEEEEEeC-CeEEEEEE
Confidence 677889999999999999976 67899999999877543 2222 3468999999999999999999998 77666777
Q ss_pred EEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccc
Q psy2776 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEF 308 (803)
Q Consensus 229 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (803)
|.|...+....... .... . +.. .. ....+.+
T Consensus 92 l~V~~~~~~~~~~~--~~~~---------------~-------------------------~~~-----~~--~~~~p~~ 122 (334)
T 1ry7_B 92 VRVTDAPSSGDDED--GEDE---------------A-------------------------EDT-----GV--DTGAPYW 122 (334)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred EEEeccCccccccc--cccc---------------c-------------------------ccc-----cc--cCCCCEE
Confidence 77765531110000 0000 0 000 00 0000111
Q ss_pred ccc---CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 309 LSK---LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 309 ~~~---~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
... .+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+....+...
T Consensus 123 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~------------------------------ 172 (334)
T 1ry7_B 123 TRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG------------------------------ 172 (334)
T ss_dssp SCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC------------------------------
T ss_pred eccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc------------------------------
Confidence 111 1223566789999999999 899999999999988765432100
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v 464 (803)
.....+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 173 -------------------------------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~------------- 208 (334)
T 1ry7_B 173 -------------------------------IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ------------- 208 (334)
T ss_dssp -------------------------------CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEE-------------
T ss_pred -------------------------------eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEE-------------
Confidence 011123346899999999999999999999887655
Q ss_pred eeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEe
Q psy2776 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWM 543 (803)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~ 543 (803)
.+.|.|...+ ..|.+. ........+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus 209 -----------------------------~~~l~V~~~~~~~p~~~--~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~ 257 (334)
T 1ry7_B 209 -----------------------------TYTLDVLERSPHRPILQ--AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257 (334)
T ss_dssp -----------------------------EEEEEEECCCCSSCBCC--TTCSCCEEEESSCCEEECCCCBCSSCEEEEEE
T ss_pred -----------------------------EEEEEEecCCCCCCceE--ecCCCceEEeCCCCEEEEEEEecCCCCeEEEE
Confidence 3333333321 111111 11113567889999999999999999999999
Q ss_pred e----CCeeecCCCcEE--EEe-------cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 544 K----NGAEITDSKACR--IFI-------DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 544 ~----~g~~i~~~~~~~--~~~-------~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
| +|..+..+.+.. +.. ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 258 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp ECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred ECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence 9 777776543211 111 1122489999999999999999999999999999999998754
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=249.86 Aligned_cols=243 Identities=17% Similarity=0.244 Sum_probs=180.1
Q ss_pred CceeeeccccceeEEEEe-cCCce-eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
|....+.+|+.+.|.|.+ +.|.+ .+.|+|+|..+....
T Consensus 8 p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~---------------------------------------- 47 (262)
T 3rjd_A 8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST---------------------------------------- 47 (262)
T ss_dssp SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------------------------------------
T ss_pred CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------------------------------------
Confidence 344556779999999999 77776 999999998876421
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
..|.|.+++.+|+|.|+|.+.|..+..
T Consensus 48 --------------------------------~~l~i~~~~~~d~G~Y~C~~~~~~~s~--------------------- 74 (262)
T 3rjd_A 48 --------------------------------PSYRITSASVNDSGEYRCQRGLSGRSD--------------------- 74 (262)
T ss_dssp --------------------------------SEEEESSCCGGGCEEEEEEESSSCCCC---------------------
T ss_pred --------------------------------CeEEEecCCcccCeEEEEEEecCCccc---------------------
Confidence 137778888899999999998754332
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCeee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEI 549 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i 549 (803)
.+.|.|..+|.. . ......+.+|+.+.|.|.+ .+.|.+.+.|+++|..+
T Consensus 75 -----------------------~~~l~v~~~~~~----~---~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~ 124 (262)
T 3rjd_A 75 -----------------------PIQLEIHRGWLL----L---QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF 124 (262)
T ss_dssp -----------------------CEEEEEECSSEE----E---EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEE
T ss_pred -----------------------cEEEEEeccceE----e---cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccc
Confidence 222333333211 1 1123567889999999999 77788999999999887
Q ss_pred cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 550 TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 550 ~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
... .....|.|.++..+|+|.|+|.|.|..+..+..+.|.|...+
T Consensus 125 ~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~--------------------------- 169 (262)
T 3rjd_A 125 KFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF--------------------------- 169 (262)
T ss_dssp EEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS---------------------------
T ss_pred ccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCC---------------------------
Confidence 532 124679999999999999999999999888888888886531
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-Cc----e
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PS----I 704 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~----v 704 (803)
.+|.+...+ ...+.+|+.+.|.|.+.|.|. |. +
T Consensus 170 -----------------------------------------~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~ 207 (262)
T 3rjd_A 170 -----------------------------------------PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYF 207 (262)
T ss_dssp -----------------------------------------CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEE
T ss_pred -----------------------------------------CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEE
Confidence 144444443 566889999999999999886 53 7
Q ss_pred EEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 705 ~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
.|++++..+.. ......|.|.++ +.+|+|.|+|.|.|..|.. ..+..+.|.
T Consensus 208 ~w~~~~~~~~~--------~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~ 259 (262)
T 3rjd_A 208 SFYMGSKTLRG--------RNTSSEYQILTA-RREDSGLYWCEAATEDGNVLKRSPELELQ 259 (262)
T ss_dssp EEEETTEEEEE--------EESCCEEEESSC-CGGGCEEEEEEEEETTSSCEEECCCEEEC
T ss_pred EEEeCCcEecc--------cCCCceEEEEEe-chhhCeEEEEEEEcccCceEEecCCeEEE
Confidence 89999988742 123457999999 7999999999999999975 334444443
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=262.55 Aligned_cols=269 Identities=17% Similarity=0.218 Sum_probs=190.8
Q ss_pred CeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccc------------------eeEEEe---cCeeEEEEecCCCCcce
Q psy2776 153 DSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKG------------------RNITYE---NNVARFTVVNCSESSEG 210 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~------------------~~~~~~---~~~~~L~i~~v~~~d~G 210 (803)
++.+.+|++++|.|.+.+ .+.+.+.|+|++..... .++... .+..+|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 567889999999999875 44457999996543211 111111 13457999999999999
Q ss_pred EEEEEEEcC-CcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 211 RYTCKATNE-AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 211 ~Y~C~a~n~-~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|+|.|.|. .|.......+.+...+..
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~---------------------------------------------------- 115 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTV---------------------------------------------------- 115 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEE----------------------------------------------------
T ss_pred EEEEEEeeCCCcceeeeeEEEeeecccc----------------------------------------------------
Confidence 999999986 455555666666654210
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEee
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 367 (803)
.+ ...+.......|+.+.|.|.+ +.|.+.+.|++++.++...... ..++.
T Consensus 116 -----------------~~-~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~--~~~~~-------- 167 (308)
T 4fom_A 116 -----------------SL-IKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTS--FPNET-------- 167 (308)
T ss_dssp -----------------EE-EECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEE--CTTSC--------
T ss_pred -----------------cc-ccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccce--eeeec--------
Confidence 00 011222334458889999986 7999999999998887643211 00000
Q ss_pred cCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCce
Q psy2776 368 VTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447 (803)
Q Consensus 368 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g 447 (803)
......|.|.++..+|.|.|+|.|.|..+
T Consensus 168 ---------------------------------------------------~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~ 196 (308)
T 4fom_A 168 ---------------------------------------------------ATIISQYKLFPTRFARGRRITCVVKHPAL 196 (308)
T ss_dssp ---------------------------------------------------EEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred ---------------------------------------------------ccccccceEEeeeecCCccEEEEEEccCC
Confidence 01123588899999999999999999877
Q ss_pred eeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeE
Q psy2776 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWK 527 (803)
Q Consensus 448 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~ 527 (803)
....+. .+.|.|..+|.+... ......+..|+.+.
T Consensus 197 ~~~~~~----------------------------------------~~~l~V~~~P~~~~~-----~~~~~~~~~g~~v~ 231 (308)
T 4fom_A 197 EKDIRY----------------------------------------SFILDIQYAPEVSVT-----GYDGNWFVGRKGVN 231 (308)
T ss_dssp SSCEEE----------------------------------------EEECCCCEEEEECCB-----CCCSCEETTCCSCE
T ss_pred CCceEE----------------------------------------eEEEEEecCCeeEEc-----ccceeeeeccccEE
Confidence 665532 445556555543211 12245567789999
Q ss_pred EEEEEcCcCCC-eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 528 VEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 528 l~C~~~g~p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
|.|.+.|.|+| .+.|+|++..+..... ..++..|.|.+++.+|+|.|+|.|+|..|..+.++.|.|..+|
T Consensus 232 l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 232 LKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp EECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred EEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 99999999998 6999999988865421 2345678889999999999999999999999999999999988
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=265.14 Aligned_cols=274 Identities=18% Similarity=0.202 Sum_probs=164.1
Q ss_pred CcCeeeecCCcEEEEEEECccCC-----------CeeEEEEcCee------cc----ceeEEEecCeeEEEEecCCCCcc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPT-----------PDIKWYKDDSL------IK----GRNITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~-----------p~i~W~~~~~~------~~----~~~~~~~~~~~~L~i~~v~~~d~ 209 (803)
..++.+.+|+.+.|.|.+.+.|. +.+.|+|++.. +. ..++... ...|.|.+++.+|+
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~D~ 91 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE--KDVLWFRPTLLNDT 91 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE--TTEEEESSCCGGGC
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec--CCEEEEccCChhhC
Confidence 56678899999999999997654 89999998842 11 1222222 34799999999999
Q ss_pred eEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 210 GRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
|.|+|.|.|..+....++.|.|...+.....
T Consensus 92 G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~------------------------------------------------- 122 (349)
T 4dep_C 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNS------------------------------------------------- 122 (349)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTSCC-------------------------------------------------
T ss_pred EEEEEEEecCCceEEEEEEEEEecCCcccCc-------------------------------------------------
Confidence 9999999999888888888888765311100
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEE------ecCCceeeEEeecCeeccccceeEEEEcCceeEE
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE------LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~------~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l 363 (803)
....+....+.+|+.+.|.|. .+.|.+.+.|+|+|.++.....+ ..+
T Consensus 123 -------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~--~~~------ 175 (349)
T 4dep_C 123 -------------------PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV--IPE------ 175 (349)
T ss_dssp -------------------SCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSE--EEE------
T ss_pred -------------------ccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccce--eec------
Confidence 001133445667999999997 36899999999999888543221 111
Q ss_pred EEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 443 (803)
...|.|.+++.+|+|.|+|.|.
T Consensus 176 ----------------------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~ 197 (349)
T 4dep_C 176 ----------------------------------------------------------GMNLSFLIALISNNGNYTCVVT 197 (349)
T ss_dssp ----------------------------------------------------------TTEEEEESCCGGGCEEEEEEEE
T ss_pred ----------------------------------------------------------CCEEEEeeeeecCCcEEEEEEE
Confidence 1348899999999999999999
Q ss_pred CCc-eeee-eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc--eE
Q psy2776 444 NEA-GTAE-TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS--QR 519 (803)
Q Consensus 444 ~~~-g~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~--~~ 519 (803)
|.. |... .+. .+.|.+..++.....+....+... ..
T Consensus 198 n~~~g~~~~~~~----------------------------------------~~~l~v~~~~~~~~~p~i~~~~~~~~~~ 237 (349)
T 4dep_C 198 YPENGRTFHLTR----------------------------------------TLTVKVVGSPKNAVPPVIHSPNDHVVYE 237 (349)
T ss_dssp EEETTEEEEEEE----------------------------------------EEEEEEECCGGGCCSCEEC---------
T ss_pred EeeCCEEEEEEE----------------------------------------EEEEEEEccCCCCCCCeEecCCCceeEE
Confidence 986 4331 111 333333332110000011111111 26
Q ss_pred EeecceeEEEEEEc----CcCCCeeEEeeCCeeecC-CCcEEEEe-----c-C---CeEEEEEeeeccCcC-eEEEEEEE
Q psy2776 520 LSVKSQWKVEVKYF----GFPRPEISWMKNGAEITD-SKACRIFI-----D-E---ETSTIAIYSVVRADT-STYTVTAT 584 (803)
Q Consensus 520 v~~g~~v~l~C~~~----g~p~~~v~W~~~g~~i~~-~~~~~~~~-----~-~---~~~~L~i~~v~~~ds-G~Y~C~a~ 584 (803)
+.+|+.+.|.|.+. |.|.|.+.|+++|..+.. ..++.+.. . . ..++|.|.++..+|+ |.|+|.|.
T Consensus 238 v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~ 317 (349)
T 4dep_C 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317 (349)
T ss_dssp -------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEE
T ss_pred EecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEE
Confidence 78899999999998 678899999999998876 22222110 0 1 135699999999999 99999999
Q ss_pred cCCCCeEEEEEEEEee
Q psy2776 585 NAAGSTSLDLSLQVLG 600 (803)
Q Consensus 585 n~~g~~s~s~~l~V~~ 600 (803)
|..|....++.|.|..
T Consensus 318 N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 318 SAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CSSCEEEEECC-----
T ss_pred cCCCcEEEEEEEeeec
Confidence 9999999999999876
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-29 Score=260.76 Aligned_cols=220 Identities=20% Similarity=0.232 Sum_probs=155.8
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCC-ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNE-AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~-~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+..+|+|.+++.+|+|.|+|.|.+. .|.... ...+.+
T Consensus 72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~------------------------------------------~~~~~v 109 (308)
T 4fom_A 72 NDATITLHNIGFSDSGKYICKAVTFPLGNAQS------------------------------------------STTVTV 109 (308)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEETTTEEEEE------------------------------------------EEEEEE
T ss_pred CceEEEEccCCHHHCEEEEEEEeeCCCcceee------------------------------------------eeEEEe
Confidence 3456999999999999999999875 344333 222333
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEecC---CeEEEEEeeeccCc
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFIDE---ETSTIAIYSVVRAD 575 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v~~~d 575 (803)
..+|..+.+. .........|+.+.|.|.+ .|.|.+.+.|++++..+...... .... ..+.|.|.++..+|
T Consensus 110 ~~~~~~~~~~----~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~--~~~~~~~~~s~l~i~~~~~~d 183 (308)
T 4fom_A 110 LVEPTVSLIK----GPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTS--FPNETATIISQYKLFPTRFAR 183 (308)
T ss_dssp EBCCEEEEEE----CSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEE--CTTSCEEEEEEEEECCCGGGT
T ss_pred eecccccccc----ccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccce--eeeecccccccceEEeeeecC
Confidence 3333221111 1112334568899999985 68999999999999877543110 0011 13579999999999
Q ss_pred CeEEEEEEEcCCCCeEE--EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 576 TSTYTVTATNAAGSTSL--DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~--s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|+|.|.|..|.... ++.|.|..+|
T Consensus 184 ~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P--------------------------------------------------- 212 (308)
T 4fom_A 184 GRRITCVVKHPALEKDIRYSFILDIQYAP--------------------------------------------------- 212 (308)
T ss_dssp TCEEEEEEECTTCSSCEEEEEECCCCEEE---------------------------------------------------
T ss_pred CccEEEEEEccCCCCceEEeEEEEEecCC---------------------------------------------------
Confidence 99999999998777544 4445554433
Q ss_pred cceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILE 731 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~ 731 (803)
.+... .....+..|+.++|.|.+.|.|.| .+.|+|++..+..... ......|.
T Consensus 213 --------------------~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~ 267 (308)
T 4fom_A 213 --------------------EVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHF 267 (308)
T ss_dssp --------------------EECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEEC
T ss_pred --------------------eeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEE
Confidence 23222 223456778999999999999998 6999999988755422 12334677
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|.++ +.+|+|.|+|.|.|.+|..+.++.|.|..
T Consensus 268 i~~v-~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~ 300 (308)
T 4fom_A 268 VHPL-TFNYSGVYICKVTNSLGQRSDQKVIYISD 300 (308)
T ss_dssp CSCC-CSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred ECCC-ChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence 8888 78999999999999999999999999864
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=259.54 Aligned_cols=290 Identities=14% Similarity=0.198 Sum_probs=180.5
Q ss_pred ccCCceeeeccccceeEEEEe-cC-CceeeEEeecCeeccccceeEEEE-cCc-eeEEEEeecCCCCCccEEEEEecccc
Q psy2776 310 SKLPSVTLVPHLGDATFQVEL-SS-PDIQVKWLKKGKEIKESARHIITS-RGT-QRKLVIKRVTQDDETDIGVLALNVKS 385 (803)
Q Consensus 310 ~~~~~~~~~~~g~~~~l~C~~-~~-p~~~i~W~~~g~~l~~~~~~~~~~-~~~-~~~l~i~~~~~~d~g~y~c~~~~~~~ 385 (803)
...|....+.+|+++.|.|.+ +. |.+.+.|+|++.++.. .+.. .+. ..++.+
T Consensus 7 ~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~----~i~~~~~~~~~r~~~-------------------- 62 (327)
T 2wng_A 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARE----LIYNQKEGHFPRVTT-------------------- 62 (327)
T ss_dssp ECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCE----EEEETTSSCCTTEEE--------------------
T ss_pred EcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCce----EEEEcCCCCcceeee--------------------
Confidence 344566777889999999999 65 8899999998754321 1110 000 000000
Q ss_pred ceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEe
Q psy2776 386 VSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465 (803)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~ 465 (803)
.........+...|.|.+++.+|+|.|+|.|.|..+......
T Consensus 63 --------------------------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~------------ 104 (327)
T 2wng_A 63 --------------------------VSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFK------------ 104 (327)
T ss_dssp --------------------------CC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEE------------
T ss_pred --------------------------ecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEe------------
Confidence 000000113345699999999999999999999765321100
Q ss_pred eeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC--eeEEe
Q psy2776 466 LRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--EISWM 543 (803)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~ 543 (803)
.+....|.|..+|..|.+. . ....+.+|+.+.|.|.+.|.|++ .+.|+
T Consensus 105 -------------------------~~~~~~l~V~~~p~~p~i~---~--~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~ 154 (327)
T 2wng_A 105 -------------------------SGAGTELSVRAKPSAPVVS---G--PAARATPQHTVSFTCESHGFSPRDITLKWF 154 (327)
T ss_dssp -------------------------ECCCEEEEEEBCCCCCEEE---C--CSSCBCTTCEEEEEEEEEEEBSSCCEEEEE
T ss_pred -------------------------ecCcEEEEEEecCCCceee---c--cccccCCCCEEEEEEEEeCccCCCcEEEEE
Confidence 0013455666666554432 1 12456889999999999998876 89999
Q ss_pred eCCeeecCCCcEEEEecC-C----eEEEEEeeeccCcCeEEEEEEEcCCCCe---EEEEEEEEeeeEeEeeecccccEEE
Q psy2776 544 KNGAEITDSKACRIFIDE-E----TSTIAIYSVVRADTSTYTVTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTK 615 (803)
Q Consensus 544 ~~g~~i~~~~~~~~~~~~-~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~ 615 (803)
++|..+............ + .+.|.|.....+|.|.|+|.|.|..|.. ..+..+.+..
T Consensus 155 k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v--------------- 219 (327)
T 2wng_A 155 KNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI--------------- 219 (327)
T ss_dssp ETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB---------------
T ss_pred ECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc---------------
Confidence 999988754321111111 1 2468888777777899999999987763 2233322111
Q ss_pred eeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEE
Q psy2776 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695 (803)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~ 695 (803)
..+|.+...+.. +.+|+.+.|.|.
T Consensus 220 ------------------------------------------------------~~~P~i~~~~~~--~~~G~~v~l~C~ 243 (327)
T 2wng_A 220 ------------------------------------------------------RVPPTLEVTQQP--VRAENQVNVTCQ 243 (327)
T ss_dssp ------------------------------------------------------CBCCEEEEEEEC--CSSTTCCEEEEE
T ss_pred ------------------------------------------------------CCCCEEEEecCC--cCCCCcEEEEEE
Confidence 125666555444 788999999999
Q ss_pred EeecCCC--ceEEeeCCeeccCCCCeEEEe--eCc---eEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEE
Q psy2776 696 VKASPAP--SIVWFRNNKPLLSSPKKREIF--DGE---NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763 (803)
Q Consensus 696 ~~g~p~~--~v~W~~~~~~l~~~~~~~~~~--~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 763 (803)
+.|.|++ .+.|++||.++..+....+.. ++. ...|.|..+ ..+|+|.|+|.|.|..|.. +.++.+.+
T Consensus 244 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~~~ 318 (327)
T 2wng_A 244 VRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVS-AHRDDVKLTCQVEHDGQPAVSKSHDLKV 318 (327)
T ss_dssp EEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC--------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred EccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccc-cccCCCEEEEEEEeCCCCCchhheEEEe
Confidence 9996444 799999999886432221222 222 256889888 6899999999999999875 55555544
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=243.86 Aligned_cols=240 Identities=15% Similarity=0.225 Sum_probs=178.3
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
|.|...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+... ...|.|.+++.+|+|.|+|.+.|..+..
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~s~ 74 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVNDSGEYRCQRGLSGRSD 74 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CCeEEEecCCcccCeEEEEEEecCCccc
Confidence 667777888889999999999999998888 89999999887543 3579999999999999999999865543
Q ss_pred eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCC
Q psy2776 224 ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKST 303 (803)
Q Consensus 224 ~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (803)
.+.|.|...+. ..
T Consensus 75 --~~~l~v~~~~~-------~~---------------------------------------------------------- 87 (262)
T 3rjd_A 75 --PIQLEIHRGWL-------LL---------------------------------------------------------- 87 (262)
T ss_dssp --CEEEEEECSSE-------EE----------------------------------------------------------
T ss_pred --cEEEEEeccce-------Ee----------------------------------------------------------
Confidence 45555543310 00
Q ss_pred ccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 304 PAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+....
T Consensus 88 --------~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------------------------------- 128 (262)
T 3rjd_A 88 --------QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------------------------------- 128 (262)
T ss_dssp --------EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------------------------
T ss_pred --------cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC-------------------------------
Confidence 0112334569999999999 57889999999988774311
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
....|.|.+++.+|+|.|+|.+.|..+....
T Consensus 129 ---------------------------------------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~---------- 159 (262)
T 3rjd_A 129 ---------------------------------------WNSNLTILKTNISHNGTYHCSGMGKHRYTSA---------- 159 (262)
T ss_dssp ---------------------------------------ECCCEEESSCCGGGCEEEEEEEESSSEEEEE----------
T ss_pred ---------------------------------------CCCeEEEEECChhhCEEEEEEEeCCCCcccc----------
Confidence 0123788889999999999999998865554
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-Ce-
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-PE- 539 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~- 539 (803)
.+.|.|..++..|.+... ....+.+|+.+.|.|.+.+.|. +.
T Consensus 160 --------------------------------~~~l~V~~~~~~p~~~~~----~~~~~~~g~~~~l~C~~~~~p~~p~~ 203 (262)
T 3rjd_A 160 --------------------------------GISVTVKELFPAPVLNAS----VTSPLLEGNLVTLSCETKLLLQRPGL 203 (262)
T ss_dssp --------------------------------CEEEEEECSSCCCEEEES----SCSSEETTCCEEEEEECCCCCC----
T ss_pred --------------------------------ceEEEeccCCCCCeEeec----CceeecCCCeEEEEeEcccCCCCCCc
Confidence 334444443222222211 1345788999999999999886 43
Q ss_pred ---eEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 540 ---ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 540 ---v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.|++++..+... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 204 ~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 204 QLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp -EEEEEEETTEEEEEE--------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred cEEEEEEeCCcEeccc--------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 6799999877531 245689999999999999999999999975
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=255.83 Aligned_cols=268 Identities=12% Similarity=0.114 Sum_probs=188.0
Q ss_pred cCeeeecCCcEEEEEEECcc---------CCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcce-EEEEEEEcCCc
Q psy2776 152 KDSVAGFQSSVTLECVVSGV---------PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAG 221 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~---------p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g 221 (803)
..+.+.+|+.+.|.|.+.+. |.+.+.|+|++..+....... ....|.|.+++.+|+| .|+|.|.|..|
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~--~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g 114 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV--KNGDLWIANYTSNDSHRRYLCTVTTKNG 114 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTE--ETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCcee--ecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence 56678899999999999874 557899999997654321112 2457999999999999 99999999998
Q ss_pred CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccC
Q psy2776 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESK 301 (803)
Q Consensus 222 ~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (803)
.......+.|...+. .
T Consensus 115 ~~~~~~~~~v~~~~p----~------------------------------------------------------------ 130 (329)
T 3oq3_B 115 DCVQGIVRSHIRKPP----S------------------------------------------------------------ 130 (329)
T ss_dssp CEEEEEEEEEECCCC----S------------------------------------------------------------
T ss_pred ceeeEEEEEEEcCCC----c------------------------------------------------------------
Confidence 755444333332210 0
Q ss_pred CCccccccccCCceeeeccccceeEEEEe-cCC-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
++. .+....+.+|+.+.|.|.+ +.| .+.+.|+|+|..+..........
T Consensus 131 ------~~~-~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~----------------------- 180 (329)
T 3oq3_B 131 ------CIP-ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS----------------------- 180 (329)
T ss_dssp ------CEE-EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-----------------------
T ss_pred ------Eec-cccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-----------------------
Confidence 000 0011223569999999999 888 89999999998885322111111
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCC--ceeeeeecccCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE--AGTAETRTMWPG 457 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~--~g~~~~~~~~~~ 457 (803)
...|.|.+++.+|+|.|+|.|.|. .|.......
T Consensus 181 ------------------------------------------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s--- 215 (329)
T 3oq3_B 181 ------------------------------------------GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS--- 215 (329)
T ss_dssp ------------------------------------------TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEE---
T ss_pred ------------------------------------------CCEEEEeecChhhCEEEEEEEEecccCCCceeEEE---
Confidence 124888999999999999999986 554443210
Q ss_pred CCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC-
Q psy2776 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP- 536 (803)
Q Consensus 458 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p- 536 (803)
..+.|.|..+|......+ .+....+.+|+.+.|.|.+.|.|
T Consensus 216 -----------------------------------~~~~l~V~~~~~~~~~~~---~~~~~~v~~G~~~~l~C~~~g~p~ 257 (329)
T 3oq3_B 216 -----------------------------------RCKILTVIPSQDHRFKLI---LDPKINVTIGEPANITCTAVSTSL 257 (329)
T ss_dssp -----------------------------------EEEEEEEECCCCCCEEEE---CCSEEEECTTSCEEEEEEEEETTC
T ss_pred -----------------------------------eeEEEEEECCCCCCCcee---cCCeeEEecCCCEEEEEEEEECCC
Confidence 134555555553322111 12347788999999999999998
Q ss_pred --CC-eeEEeeCCeee-cCCCcEEEE--ecC--CeEEEEEeeeccCcCe-EEEEEEEcCCCCeEEEEEEEE
Q psy2776 537 --RP-EISWMKNGAEI-TDSKACRIF--IDE--ETSTIAIYSVVRADTS-TYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 537 --~~-~v~W~~~g~~i-~~~~~~~~~--~~~--~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~s~s~~l~V 598 (803)
++ .+.|+++|..+ ..+.+.... ... ..+.|.|.++..+|+| .|+|.|.|..|..+.++.|.|
T Consensus 258 ~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 258 LVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp CTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred CCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 67 88999999884 333332221 111 3578999999999999 999999999999999988876
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=250.46 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=165.1
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|.|.+++.+|+|.|+|.+.|..|.... .+.|.|..
T Consensus 50 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~------------------------------------------~~~l~V~~ 87 (292)
T 4dkd_C 50 SSILSTNNATFQNTGTYRCTEPGDPLGGSA------------------------------------------AIHLYVKD 87 (292)
T ss_dssp EEEEEESSCCGGGCSCEEECCCC----CCE------------------------------------------EECCEECC
T ss_pred eEEEEEcccccccCEEEEEEEccCCCCcce------------------------------------------EEEEEEcC
Confidence 446889999999999999999998766544 55666666
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
+|.... .......+.+|+.+.|.|.+.+ |. +.+.|+++ +..+....++.... ...|.|.++..+|+|.
T Consensus 88 ~~~~~~-----~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~ 158 (292)
T 4dkd_C 88 PARPWN-----VLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSP---WHGFTIHRAKFIQSQD 158 (292)
T ss_dssp SSCCEE-----ESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCS---SSCCEETTCCGGGCSE
T ss_pred cccccc-----ccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccC---CceEEECCCCHHHCeE
Confidence 664311 1223577889999999999998 54 78999997 55665554443322 2349999999999999
Q ss_pred EEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 579 YTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 579 Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|+|.|.|..|.. +..+.|.|...+
T Consensus 159 Y~C~a~n~~~~~~s~~~~l~V~~~~------------------------------------------------------- 183 (292)
T 4dkd_C 159 YQCSALMGGRKVMSISIRLKVQKVI------------------------------------------------------- 183 (292)
T ss_dssp EEEEECSTTSCEECCCEEEEEECCC-------------------------------------------------------
T ss_pred EEEEEEeCCCceeEEEEEEEEeCCC-------------------------------------------------------
Confidence 999999987765 346777775411
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-CceEEeeCCeeccCCCCeEEEee--CceEEEEEec
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFD--GENIILELKE 734 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~--~~~~~L~i~~ 734 (803)
..+|.+...+....+.+|+.+.|.|.+.|.|+ +.+.|++++..+........... .....|.|.+
T Consensus 184 ------------~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 251 (292)
T 4dkd_C 184 ------------PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQ 251 (292)
T ss_dssp ------------CSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESS
T ss_pred ------------CCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECc
Confidence 12677777777777789999999999998775 46889999887754433222111 1345899999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
+ +.+|+|.|+|.|.|.+|..+.++.|.|.....
T Consensus 252 v-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~ 284 (292)
T 4dkd_C 252 V-DFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284 (292)
T ss_dssp C-CTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred c-ChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence 9 79999999999999999999999999875443
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-29 Score=266.51 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=200.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEEC-------ccCCCeeEEEEcCeec--cce---eEEEecCeeEEEEecCCCCcc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVS-------GVPTPDIKWYKDDSLI--KGR---NITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~-------g~p~p~i~W~~~~~~~--~~~---~~~~~~~~~~L~i~~v~~~d~ 209 (803)
...|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+ ... ++.. ....|.|.+++.+|+
T Consensus 16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~ 93 (339)
T 3o4o_C 16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA--QDGALWLLPALQEDS 93 (339)
T ss_dssp --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE--ETTEEEESSBCTTCC
T ss_pred hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe--eCCeEEECCCCcccC
Confidence 3567888888999999999999999998 8899999999999873 322 3333 235799999999999
Q ss_pred eEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 210 GRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
|.|+|.+.|..|....++.|.|...+....
T Consensus 94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~-------------------------------------------------- 123 (339)
T 3o4o_C 94 GTYVCTTRNASYCDKMSIELRVFENTDAFL-------------------------------------------------- 123 (339)
T ss_dssp EEEECCEEETTEEEEEEEEEEEECSCGGGH--------------------------------------------------
T ss_pred EEEEEEEECCcceEEEEEEEEEEcCCCccc--------------------------------------------------
Confidence 999999999998887888888876631110
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEE-----e-cCCceeeEEeecCeeccccceeEEEEcCceeEE
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE-----L-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l 363 (803)
........+.+|+.+.|.|. + +.|.+.+.|+|+|..+........
T Consensus 124 --------------------~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~--------- 174 (339)
T 3o4o_C 124 --------------------PFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL--------- 174 (339)
T ss_dssp --------------------HHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEE---------
T ss_pred --------------------cccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeE---------
Confidence 00011224567999999999 6 789999999999988865422111
Q ss_pred EEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 443 (803)
...+...|.|.+++.+|+|.|+|.|.
T Consensus 175 ------------------------------------------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~ 200 (339)
T 3o4o_C 175 ------------------------------------------------------SVRGTTHLLVHDVALEDAGYYRCVLT 200 (339)
T ss_dssp ------------------------------------------------------ECTTSSEEEESSCCGGGCEEEEEEEE
T ss_pred ------------------------------------------------------EcCCcceEEEcccCHhhCeEEEEEEE
Confidence 11122358899999999999999999
Q ss_pred CCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeec
Q psy2776 444 NEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523 (803)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g 523 (803)
|..|....... ..+.|.|..++......+. .......+.+|
T Consensus 201 n~~g~~~~~~~--------------------------------------~~~~l~V~~~~~~~~P~i~-~~~~~~~v~~G 241 (339)
T 3o4o_C 201 FAHEGQQYNIT--------------------------------------RSIELRIKKKKEETIPVII-SPLKTISASLG 241 (339)
T ss_dssp CCBTTBCCEEE--------------------------------------EEEEEEEECCCCCCCCEEC-CCSCCCCCCCC
T ss_pred ECCCCeEEEEE--------------------------------------EEEEEEEEcCCCCCCCEEe-cCCceeEeccC
Confidence 98774322110 1333344332211111111 11234567889
Q ss_pred ceeEEEEEE---cCcC-CCeeEEeeCCeeecCC---------CcEEEEecCC---eEEEEEeeeccCcC-eEEEEEEEcC
Q psy2776 524 SQWKVEVKY---FGFP-RPEISWMKNGAEITDS---------KACRIFIDEE---TSTIAIYSVVRADT-STYTVTATNA 586 (803)
Q Consensus 524 ~~v~l~C~~---~g~p-~~~v~W~~~g~~i~~~---------~~~~~~~~~~---~~~L~i~~v~~~ds-G~Y~C~a~n~ 586 (803)
+.+.|.|.+ .|.| .+.+.|+++|..+... .+..+...+. .+.|.|.++..+|+ |.|+|.|.|.
T Consensus 242 ~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~ 321 (339)
T 3o4o_C 242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT 321 (339)
T ss_dssp SCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEec
Confidence 999999999 8999 7899999999876432 2222211211 23799999999998 9999999999
Q ss_pred CCCeEEEEEEEEee
Q psy2776 587 AGSTSLDLSLQVLG 600 (803)
Q Consensus 587 ~g~~s~s~~l~V~~ 600 (803)
.|..+..+.+.+..
T Consensus 322 ~G~~~~~~~~~~~~ 335 (339)
T 3o4o_C 322 LSFQTLRTTVKEHH 335 (339)
T ss_dssp TEEECCBCCCCC--
T ss_pred cCceEEEEEhhHhc
Confidence 99998887776643
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-28 Score=256.32 Aligned_cols=221 Identities=19% Similarity=0.198 Sum_probs=161.7
Q ss_pred CeeEEEEEeccCCCceeEEEE-eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 421 NVARFTVVNCSESSEGRYTCK-ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~-a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+..+|.|.+++.+|+|.|+|. +.+..+.... .+.|.|
T Consensus 90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~------------------------------------------~~~l~V 127 (331)
T 3u83_A 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRES------------------------------------------QLNLTV 127 (331)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEEE------------------------------------------EEEEEE
T ss_pred CCceEEEcccCcccCcEEEEEEEecCCCccEE------------------------------------------EEEEEE
Confidence 345699999999999999998 4555554443 445555
Q ss_pred CCCCCCccceeeeccccceEEeec---ceeEEEEE-EcCcCCCeeEEeeCCeeecCCCcEEEEecCC----eEEEEEeee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVK---SQWKVEVK-YFGFPRPEISWMKNGAEITDSKACRIFIDEE----TSTIAIYSV 571 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g---~~v~l~C~-~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v 571 (803)
..+|.+.. ........+.+| +.+.|.|. ..+.|.+.+.|++++...... .......+ .+.|.|.++
T Consensus 128 ~~~p~~~~----~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~ 201 (331)
T 3u83_A 128 MAKPTNWI----EGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY--QEIRNPNGTVTVISRYRLVPS 201 (331)
T ss_dssp EBCCEEEE----EECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE--EEEECTTSCEEEEEEEEECCC
T ss_pred ecCCccee----ecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc--ceeECCCCcEEEEEEEEEEec
Confidence 55554311 111234667778 78999998 889999999999963322110 01111111 257899999
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCC
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~ 651 (803)
..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 202 ~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P------------------------------------------------- 232 (331)
T 3u83_A 202 REAHQQSLACIVNYHMDRFKESLTLNVQYEP------------------------------------------------- 232 (331)
T ss_dssp GGGTTCEEEEEEEETTEEEEEEEECCEEEEE-------------------------------------------------
T ss_pred cccCCCEEEEEEecCCCcceeeEEEEEecCC-------------------------------------------------
Confidence 9999999999999999988888888887644
Q ss_pred CccceeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccCCCCeEEEeeCceEE
Q psy2776 652 EATTELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENII 729 (803)
Q Consensus 652 ~s~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~ 729 (803)
.+. ..+....+.+|+.+.|.|.+.|.|.|. +.|++++..+..... ..+. +
T Consensus 233 ----------------------~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~----~~~~--~ 284 (331)
T 3u83_A 233 ----------------------EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE----AQNR--T 284 (331)
T ss_dssp ----------------------EEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE----EETT--E
T ss_pred ----------------------eEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccce----ecCc--E
Confidence 222 223344578899999999999999998 999999998855421 2233 6
Q ss_pred EEEe-cCCCCCCceeEEEEEEccCcceeeeEEEEEEeec
Q psy2776 730 LELK-EADSETDAGDYKVVATNELGSATHGARVTVDVEK 767 (803)
Q Consensus 730 L~i~-~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 767 (803)
|.|. ++ +.+|+|.|+|.|.|.+|..+.++.|.|....
T Consensus 285 L~i~~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 322 (331)
T 3u83_A 285 LFFKGPI-NYSLAGTYICEATNPIGTRSGQVEVNITEAA 322 (331)
T ss_dssp EEECSCC-CGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred EEEeCCC-ccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence 9999 88 7899999999999999999999999986443
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=245.99 Aligned_cols=267 Identities=15% Similarity=0.186 Sum_probs=176.7
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecC--eeEEEEecCCCCcceEEEEEEEcCCcC-
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN--VARFTVVNCSESSEGRYTCKATNEAGT- 222 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~- 222 (803)
.|.....+..+.+|+.+.|.|.+.+. +.|++++..+.........+ ..+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 2 ~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 77 (289)
T 3mjg_X 2 VVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLE 77 (289)
T ss_dssp CBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-----
T ss_pred eecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCC
Confidence 34445556788899999999999874 99999998875332222222 478999999999999999999998876
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
...+..+.|....
T Consensus 78 ~~~~~~~~v~v~~------------------------------------------------------------------- 90 (289)
T 3mjg_X 78 TDERKRLYIFVPD------------------------------------------------------------------- 90 (289)
T ss_dssp -CCCEEEEEECCC-------------------------------------------------------------------
T ss_pred cCcEEeEEEEEEC-------------------------------------------------------------------
Confidence 2233444444331
Q ss_pred CccccccccCCc--eeeeccccceeEEEEecCCceeeEEeecC--eeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 303 TPAVEFLSKLPS--VTLVPHLGDATFQVELSSPDIQVKWLKKG--KEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 303 ~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~p~~~i~W~~~g--~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
|...++...+. ...+.+|+.+.|.|.+..|.+.+.|++++ .++... . +
T Consensus 91 -p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~--~----~--------------------- 142 (289)
T 3mjg_X 91 -PTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVP--Y----D--------------------- 142 (289)
T ss_dssp -TTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCC--E----E---------------------
T ss_pred -CCcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCcccee--e----c---------------------
Confidence 00011111111 14466799999999997777888888764 332210 0 0
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
.... + +..+|+|.|+|.|.|..+.....
T Consensus 143 -----------------------------------------~~~~-~----~~~~d~G~Y~C~a~n~~~~~~s~------ 170 (289)
T 3mjg_X 143 -----------------------------------------HQRG-F----SGIFEDRSYICKTTIGDREVDSD------ 170 (289)
T ss_dssp -----------------------------------------TTTE-E----EECCCSSEEEEEEEETTEEEECC------
T ss_pred -----------------------------------------CCcC-e----eeeccCcEEEEEEEeCCceeeee------
Confidence 0000 1 12568999999999877665542
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP 538 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~ 538 (803)
.+.|.+..+ ..|.+.+.. ....+.+|+.+.|.|.+.|.|.+
T Consensus 171 -----------------------------------~~~l~v~~~-~~p~i~~~~---~~~~v~~G~~v~L~C~~~g~p~p 211 (289)
T 3mjg_X 171 -----------------------------------AYYVYRLQV-SSINVSVNA---VQTVVRQGENITLMCIVIGNEVV 211 (289)
T ss_dssp -----------------------------------CEEEEECCC-CCCCCEEEE---SCSEEETTSCEEEEEEEESCSSB
T ss_pred -----------------------------------eEEEEecCC-CCCCcEEeC---CcceeEcCCCEEEEEEECCCCCc
Confidence 223333331 111122211 23568899999999999999999
Q ss_pred eeEEeeCCeeecCCCcEEEEe-----cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 539 EISWMKNGAEITDSKACRIFI-----DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 539 ~v~W~~~g~~i~~~~~~~~~~-----~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.|++++............. ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|...+
T Consensus 212 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 212 NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280 (289)
T ss_dssp EEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred ceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence 999998876544332211111 1235799999999999999999999999999999999998866
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=243.13 Aligned_cols=237 Identities=19% Similarity=0.213 Sum_probs=173.9
Q ss_pred eeccccceeEEEEe-c-CCce--eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 317 LVPHLGDATFQVEL-S-SPDI--QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~-~p~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
.+.+|+.+.|.|.+ + .|.+ .+.|+|+|..+.. .+...+.
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--------------------------------- 56 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--------------------------------- 56 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS---------------------------------
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC---------------------------------
Confidence 56789999999999 6 7776 9999999988764 1111111
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEE---eccCCCce--eEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVV---NCSESSEG--RYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~---~~~~~d~G--~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
.|.+. .++.+|+| .|+|.+.|..|....
T Consensus 57 -------------------------------~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~---------------- 89 (265)
T 2oz4_A 57 -------------------------------SFSAKASVSVTAEDEGTQRLTCAVILGNQSQET---------------- 89 (265)
T ss_dssp -------------------------------EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEE----------------
T ss_pred -------------------------------eEEEEeecccccccCCcceEEEEEecCCCCcEE----------------
Confidence 13333 33667777 599999999887655
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCe
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGA 547 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~ 547 (803)
.+.|.|...|. +.+. .....+.+|+.+.|.|.+. |.+.+.| +|.
T Consensus 90 --------------------------~~~l~V~~~p~-p~~~-----~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~ 133 (265)
T 2oz4_A 90 --------------------------LQTVTIYSFPA-PNVI-----LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGV 133 (265)
T ss_dssp --------------------------EEEEEEECCCC-CEEE-----ESCSEEETTCEEEEEEECC--TTSEEEE--SSC
T ss_pred --------------------------EEEEEEeCCCC-ceee-----cCCceecCCCcEEEEEEcc--CCCEEEE--CCE
Confidence 44555554332 2221 1245688899999999998 8899999 787
Q ss_pred eecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC-CCeE---EEEEEEEeeeEeEeeecccccEEEeeeeCCcc
Q psy2776 548 EITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA-GSTS---LDLSLQVLGYIIQQQEKNSLKFTKVATLDPST 623 (803)
Q Consensus 548 ~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g~~s---~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~ 623 (803)
.+... +..+.|.|..+..+|.|.|+|.|.|.. |... .++.|.|..+|
T Consensus 134 ~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p--------------------- 184 (265)
T 2oz4_A 134 PAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP--------------------- 184 (265)
T ss_dssp SSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEE---------------------
T ss_pred EccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCC---------------------
Confidence 76332 234678999999999999999998654 7765 77788887755
Q ss_pred ceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCc
Q psy2776 624 LQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 703 (803)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~ 703 (803)
...+...+....+.+|+.+.|.|.+.|.|.|.
T Consensus 185 ------------------------------------------------~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~ 216 (265)
T 2oz4_A 185 ------------------------------------------------RLDERDCPGNWTWPENSQQTPMCQAWGNPLPE 216 (265)
T ss_dssp ------------------------------------------------ECCGGGSCSEEEEETTCEECCCCCCEEESCCE
T ss_pred ------------------------------------------------ccccccCCCccEEcCCCeEEEEeECccCCCCe
Confidence 11111223456788999999999999999999
Q ss_pred eEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 704 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 704 v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|+++|..+... +. +. .+ +.+|+|.|+|.|.|.+|.++.++.|.|.
T Consensus 217 i~W~~~~~~~~~~--------g~---~~--~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 263 (265)
T 2oz4_A 217 LKCLKDGTFPLPI--------GE---SV--TV-TRDLEGTYLCRARSTQGEVTREVTVNVL 263 (265)
T ss_dssp EEEEETTTEECCT--------TS---CE--EC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCcccCCC--------Cc---EE--Ee-ehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence 9999998833222 22 21 25 6799999999999999999999999885
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=262.11 Aligned_cols=329 Identities=16% Similarity=0.197 Sum_probs=194.0
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccC-CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC-
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTG-PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP- 174 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~-~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p- 174 (803)
...|.|.+++.+|+|.|+|.+.+..+.. ..... ..+.+.... ..+|.+........+.+|+.+.|.|.+.|. |.|
T Consensus 78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~-~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~ 155 (444)
T 1igt_B 78 TLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQG-TTVTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV 155 (444)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCC-EEEEECSCC-CBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCC
T ss_pred eEEEEECCCCHHHCEEEEEEEecCCcccccccCc-EEEEecCCC-CCCCceeEecccccCCCCCcEEEEEEEcceeCCCc
Confidence 4689999999999999999999865431 01111 223333211 234544432223335789999999999984 776
Q ss_pred eeEEEEcCeeccce--eEEEec----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeec
Q psy2776 175 DIKWYKDDSLIKGR--NITYEN----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARG 248 (803)
Q Consensus 175 ~i~W~~~~~~~~~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~ 248 (803)
.+.|++++..+... ...... ....|.|.++..+| |.|+|.|.|..+.......+.+.+.
T Consensus 156 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~-------------- 220 (444)
T 1igt_B 156 TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGP-------------- 220 (444)
T ss_dssp EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCC--------------
T ss_pred EEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCC--------------
Confidence 89999998764211 000111 12569999999999 9999999999987654444433111
Q ss_pred ceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeecc-CCCccccccccCCceee-eccccceeE
Q psy2776 249 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFES-KSTPAVEFLSKLPSVTL-VPHLGDATF 326 (803)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~l 326 (803)
+.+.|... .+.. .....+.+....|.... +.+|+.+.|
T Consensus 221 ---------------~~~~~~~~-------------------------~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L 260 (444)
T 1igt_B 221 ---------------TIKPCPPC-------------------------KCPAPNLLGGPSVFIFPPKIKDVLMISLSPIV 260 (444)
T ss_dssp ---------------SCCCCCCC-------------------------SCCCSCCCCCCEEEEECCCHHHHHCTTSCCEE
T ss_pred ---------------CcccCCcc-------------------------ccCCcccCCCceEEecCCchhheeecCCCcEE
Confidence 00000000 0000 00001111111222222 467999999
Q ss_pred EEEe-cC---C-ceeeEEeecCeeccccceeE--EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCce
Q psy2776 327 QVEL-SS---P-DIQVKWLKKGKEIKESARHI--ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGW 399 (803)
Q Consensus 327 ~C~~-~~---p-~~~i~W~~~g~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~ 399 (803)
.|.+ +. | .+.+.|+|+|..+....... ...++ .|
T Consensus 261 ~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~----------------~~----------------------- 301 (444)
T 1igt_B 261 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS----------------TL----------------------- 301 (444)
T ss_dssp EEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSS----------------SE-----------------------
T ss_pred EEEEeecccCCCCeEEEEEECCccccCcccccceeCCCC----------------cE-----------------------
Confidence 9999 65 3 47999999998876432110 00000 00
Q ss_pred eeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhh
Q psy2776 400 WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKR 479 (803)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 479 (803)
.....|+|.++..+|+|.|+|.|.|..+......
T Consensus 302 --------------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~-------------------------- 335 (444)
T 1igt_B 302 --------------------RVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIER-------------------------- 335 (444)
T ss_dssp --------------------EEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEE--------------------------
T ss_pred --------------------EEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEE--------------------------
Confidence 1234699999999999999999999887653311
Q ss_pred hhcccccccccccceeee--ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcE
Q psy2776 480 VLQKLAVPFSYKTRTTNL--QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKAC 555 (803)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~ 555 (803)
.+.+ .+..+|.+ .+.... ...+..| .+.|.|.+.|. |++ .++|+|+|..+......
T Consensus 336 --------------~v~~~~~~~~~P~v---~~~~~~--~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 395 (444)
T 1igt_B 336 --------------TISKPKGSVRAPQV---YVLPPP--EEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT 395 (444)
T ss_dssp --------------EEECCCCCCBCCEE---EEECCC--GGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred --------------EEeccCCCCCCCEE---EEeCCC--hHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccc
Confidence 1111 22333322 111111 1122334 59999999985 555 89999999988432211
Q ss_pred EEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 556 RIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 556 ~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
......+ .+.|.|.....+|.|.|+|.|.|...
T Consensus 396 ~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 396 EPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred cceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 1111222 24567777777789999999999854
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=249.96 Aligned_cols=280 Identities=18% Similarity=0.290 Sum_probs=177.7
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCeeccc----------eeEEEe-------cCeeEEEEecCCC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIKG----------RNITYE-------NNVARFTVVNCSE 206 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~~~~----------~~~~~~-------~~~~~L~i~~v~~ 206 (803)
..|...+..+.+.+|+.+.|.|.+.+. |.+.+.|+|++..... .++... .....|.|.+++.
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~ 83 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP 83 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence 345666778899999999999999987 8889999998754321 011211 3456799999999
Q ss_pred CcceEEEEEEEcCCcCee-----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 207 SSEGRYTCKATNEAGTAE-----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+|+|.|+|.|.|..+... ..+.|.|...+..+
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p------------------------------------------- 120 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAP------------------------------------------- 120 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCC-------------------------------------------
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCc-------------------------------------------
Confidence 999999999999866421 23566665542110
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCce--eeEEeecCeeccccceeEEEEcC
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI--QVKWLKKGKEIKESARHIITSRG 358 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~--~i~W~~~g~~l~~~~~~~~~~~~ 358 (803)
.+. .+. ..+.+|+.+.|.|.+ +.|.+ .+.|+++|.++......... .
T Consensus 121 --------------------------~i~-~~~-~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~-~- 170 (327)
T 2wng_A 121 --------------------------VVS-GPA-ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP-V- 170 (327)
T ss_dssp --------------------------EEE-CCS-SCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEEC-S-
T ss_pred --------------------------eee-ccc-cccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccccccc-c-
Confidence 011 111 334669999999999 65544 99999999998754321111 0
Q ss_pred ceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeE
Q psy2776 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438 (803)
Q Consensus 359 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 438 (803)
.+.|.|.. ...|.|.....+|.|.|
T Consensus 171 ------------~~~~~~~~-------------------------------------------~s~L~i~~~~~d~~g~Y 195 (327)
T 2wng_A 171 ------------GESVSYSI-------------------------------------------HSTAKVVLTREDVHSQV 195 (327)
T ss_dssp ------------SCCSCEEE-------------------------------------------EEEEEEECCTTGGGCEE
T ss_pred ------------cCCCceEE-------------------------------------------EEEEEEechhcCcCceE
Confidence 11122221 12377777777788999
Q ss_pred EEEeeCCceeee-eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc
Q psy2776 439 TCKATNEAGTAE-TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517 (803)
Q Consensus 439 ~C~a~~~~g~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 517 (803)
+|.|.|..+... ... . ..+.+.+..+|.+. +..
T Consensus 196 ~C~a~n~~~~~~~~~~---------~-----------------------------~~~~~~v~~~P~i~---~~~----- 229 (327)
T 2wng_A 196 ICEVAHVTLQGDPLRG---------T-----------------------------ANLSETIRVPPTLE---VTQ----- 229 (327)
T ss_dssp EEEEECTTSCSCCEEE---------E-----------------------------EEGGGTBCBCCEEE---EEE-----
T ss_pred EEEEeccccCCCcccc---------e-----------------------------EEeccccCCCCEEE---Eec-----
Confidence 999999876531 110 0 02223444555431 111
Q ss_pred eEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
..+.+|+.+.|.|.+.|.|++ .+.|+|+|..+.......+....++ +.|.|.++..+|+|.|+|.|.|..|..
T Consensus 230 ~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 230 QPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp ECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred CCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 116789999999999996544 7999999998865422222222222 578999999999999999999998875
Q ss_pred -EEEEEEEE
Q psy2776 591 -SLDLSLQV 598 (803)
Q Consensus 591 -s~s~~l~V 598 (803)
+.++.+.+
T Consensus 310 ~s~~~~~~~ 318 (327)
T 2wng_A 310 VSKSHDLKV 318 (327)
T ss_dssp EEEEEECC-
T ss_pred chhheEEEe
Confidence 44444433
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=240.73 Aligned_cols=225 Identities=13% Similarity=0.117 Sum_probs=147.2
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 502 (803)
..|.|.+++.+|+|.|+|.|.|..|...... . .+.+.+..+
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~------~---------------------------------~~~v~v~~p 91 (289)
T 3mjg_X 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDER------K---------------------------------RLYIFVPDP 91 (289)
T ss_dssp EEEEECSCCGGGCEEEEEECCC------CCC------E---------------------------------EEEEECCCT
T ss_pred EEEEEccCChhhCEEEEEEEcccCCCCcCcE------E---------------------------------eEEEEEECC
Confidence 4688999999999999999999886533211 0 222333322
Q ss_pred CCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
+ .+.+..... .....+.+|+.+.|.|.+. .|.+.+.|++++........ .+.....+ ...|+|.|+|.
T Consensus 92 ~-~~~~~~~~~-~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~----~~~~~~~~-----~~~d~G~Y~C~ 159 (289)
T 3mjg_X 92 T-VGFLPNDAE-ELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP----YDHQRGFS-----GIFEDRSYICK 159 (289)
T ss_dssp T-CCBCCCCHH-HHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC----EETTTEEE-----ECCCSSEEEEE
T ss_pred C-cCcccCCCC-cceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee----ecCCcCee-----eeccCcEEEEE
Confidence 1 111110000 0015688999999999998 68888999886522211111 01111111 35799999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. +..+.|.|...
T Consensus 160 a~n~~~~~~s~~~~l~v~~~------------------------------------------------------------ 179 (289)
T 3mjg_X 160 TTIGDREVDSDAYYVYRLQV------------------------------------------------------------ 179 (289)
T ss_dssp EEETTEEEECCCEEEEECCC------------------------------------------------------------
T ss_pred EEeCCceeeeeeEEEEecCC------------------------------------------------------------
Confidence 99876543 23344555331
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe-----eCceEEEEEecCC
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-----DGENIILELKEAD 736 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~-----~~~~~~L~i~~v~ 736 (803)
.+|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++............. ......|.|.++
T Consensus 180 ---------~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v- 249 (289)
T 3mjg_X 180 ---------SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA- 249 (289)
T ss_dssp ---------CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSC-
T ss_pred ---------CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEccc-
Confidence 15556666666789999999999999999999999998876544322222221 224578999999
Q ss_pred CCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 737 SETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
+.+|+|.|+|.|.|.+|..+.++.|.|.+.+.
T Consensus 250 ~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 250 ELEDSGTYTCNVTESVNDHQDEKAINITVVES 281 (289)
T ss_dssp CSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred ChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence 79999999999999999999999999976543
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=250.75 Aligned_cols=279 Identities=12% Similarity=0.085 Sum_probs=176.8
Q ss_pred CccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
.+.+.+...+. ..+.+|++++|.|.+ +. .+.+.|+|+|..+......
T Consensus 22 ~~~P~i~~~p~--~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~----------------------------- 69 (316)
T 3vh8_G 22 QDKPFLSAWPS--AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHG----------------------------- 69 (316)
T ss_dssp --CCEEEEESC--SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHH-----------------------------
T ss_pred CCCCEeeccCC--CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecC-----------------------------
Confidence 34444444433 456789999999999 55 7899999998775432100
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
......|.|.+++.+|+|.|+|.|.+..+.......
T Consensus 70 -------------------------------------~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~------- 105 (316)
T 3vh8_G 70 -------------------------------------RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAP------- 105 (316)
T ss_dssp -------------------------------------CCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCC-------
T ss_pred -------------------------------------CcceEEEEECCCCcccCeEEEEEEEcCCCCcceecC-------
Confidence 011234888899999999999999875432211100
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeE
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEIS 541 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~ 541 (803)
+..+.|.|...+..|.+.... ...+.+|+.++|.|.+. .+++.+.
T Consensus 106 ------------------------------s~~~~l~V~~~~~~p~~~~~~----~~~v~~G~~v~L~C~~~-~~~~~~~ 150 (316)
T 3vh8_G 106 ------------------------------SNPVVIMVTGNHRKPSLLAHP----GPLVKSGERVILQCWSD-IMFEHFF 150 (316)
T ss_dssp ------------------------------CCCEEEEEECSSCCCEEEEES----CSEEETTCCEEEEEEES-SCCSEEE
T ss_pred ------------------------------CCcEEEEEecCCCCCeEEecC----CCccCCCCeEEEEEcCC-CCCcEEE
Confidence 013444444433333222111 22378999999999995 4667899
Q ss_pred EeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-----EEEEEEEEeeeEeEeeecccccEEE
Q psy2776 542 WMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-----SLDLSLQVLGYIIQQQEKNSLKFTK 615 (803)
Q Consensus 542 W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-----s~s~~l~V~~~p~~~~~~~~~~w~~ 615 (803)
|+|+|..+...... ..........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+
T Consensus 151 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~------------- 217 (316)
T 3vh8_G 151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY------------- 217 (316)
T ss_dssp EEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS-------------
T ss_pred EEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC-------------
Confidence 99999876543211 11112245789999999999999999999998742 455566664321
Q ss_pred eeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEE
Q psy2776 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695 (803)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~ 695 (803)
.+|.+...+. ..+.+|++++|.|.
T Consensus 218 -------------------------------------------------------~~p~i~~~~~-~~v~~G~~v~L~C~ 241 (316)
T 3vh8_G 218 -------------------------------------------------------EKPSLSAQPG-PKVQAGESVTLSCS 241 (316)
T ss_dssp -------------------------------------------------------CCCEEEEESC-SCCCTTSCCEEEEE
T ss_pred -------------------------------------------------------CCCeEEeCCC-CeecCCCcEEEEEE
Confidence 1455554443 36788999999999
Q ss_pred EeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcc-----eeeeEEEEEEe
Q psy2776 696 VKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGS-----ATHGARVTVDV 765 (803)
Q Consensus 696 ~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~-----~~~~~~l~V~~ 765 (803)
+. .|.+.+.|+|+|..+........... .....|.|.++ + |+|.|+|.|+|..+. .+..+.|.|.+
T Consensus 242 ~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 313 (316)
T 3vh8_G 242 SR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPA-T--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG 313 (316)
T ss_dssp ES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC--------CEEEEEEEBTTBTTEECCCCCCEEC----
T ss_pred CC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCc-C--CCEEEEEEeecCCCchhccCCCCcEEEEEeC
Confidence 97 58889999999987643211111112 23468999998 5 999999999998763 46667777754
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=260.64 Aligned_cols=131 Identities=14% Similarity=0.196 Sum_probs=88.1
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCcc--------C--CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGT--------G--PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECV 167 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~--------~--~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~ 167 (803)
...|.|.+++.+|+|.|+|.+.+..|. . ..... ..+.+... ...+|.+...+....+.+|+.+.|.|.
T Consensus 78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~-~~l~V~~~-~~~~P~i~~~~~~~~~~~g~~v~L~C~ 155 (457)
T 1hzh_H 78 TAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKG-TTVIVSSA-STKGPSVFPLAPSSKSTSGGTAALGCL 155 (457)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCC-EEEEECSC-CCBCCEEEEECCCSCCCTTCCEEEEEE
T ss_pred EEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCc-EEEEecCC-CCCCCeEEecCccccccCCCcEEEEEE
Confidence 458999999999999999999987651 0 11122 22333221 123555554444445679999999999
Q ss_pred ECcc-CC-CeeEEEEcCeecccee---EEEecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 168 VSGV-PT-PDIKWYKDDSLIKGRN---ITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 168 ~~g~-p~-p~i~W~~~~~~~~~~~---~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
+.|. |. +.+.|++++..+.... ....++ ...|.|.++..+| |.|+|.|.|..+.......+.+
T Consensus 156 ~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~ 227 (457)
T 1hzh_H 156 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEP 227 (457)
T ss_dssp EESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred EeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecc
Confidence 9986 64 7899999986543211 111111 2479999999999 9999999998776554444433
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=250.35 Aligned_cols=274 Identities=17% Similarity=0.228 Sum_probs=188.4
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
.+|.|...+.+..+.+|+.+.|.|.+.+. +.|++++.. ............|.|.+++.+|+|.|+|.+.|..|.
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 76 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP--HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG 76 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS--SCEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC--ceEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence 57888888888999999999999999873 999976532 222333445679999999999999999999998887
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
...++.|.|...+..
T Consensus 77 ~~~~~~l~V~~~~~~----------------------------------------------------------------- 91 (292)
T 4dkd_C 77 GSAAIHLYVKDPARP----------------------------------------------------------------- 91 (292)
T ss_dssp CCEEECCEECCSSCC-----------------------------------------------------------------
T ss_pred cceEEEEEEcCcccc-----------------------------------------------------------------
Confidence 777777877765210
Q ss_pred CccccccccCCceeeeccccceeEEEEecCCc--eeeEEeec-CeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVELSSPD--IQVKWLKK-GKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~--~~i~W~~~-g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
+ ...+....+.+|+.+.|.|.+..|. +.+.|+++ +..+....+..+...
T Consensus 92 -----~-~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---------------------- 143 (292)
T 4dkd_C 92 -----W-NVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPW---------------------- 143 (292)
T ss_dssp -----E-EESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSS----------------------
T ss_pred -----c-cccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCC----------------------
Confidence 0 1112334456799999999994354 78999997 555544333221111
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~ 459 (803)
..|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 144 -------------------------------------------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~------- 173 (292)
T 4dkd_C 144 -------------------------------------------HGFTIHRAKFIQSQDYQCSALMGGRKVMSI------- 173 (292)
T ss_dssp -------------------------------------------SCCEETTCCGGGCSEEEEEECSTTSCEECC-------
T ss_pred -------------------------------------------ceEEECCCCHHHCeEEEEEEEeCCCceeEE-------
Confidence 127788899999999999999876654431
Q ss_pred ceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCC-
Q psy2776 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR- 537 (803)
Q Consensus 460 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~- 537 (803)
.+.|.|...+ ..|.+... .....+.+|+.+.|.|.+.+.|+
T Consensus 174 ----------------------------------~~~l~V~~~~~~~p~i~~~---~~~~~~~~g~~v~l~C~~~~~~~~ 216 (292)
T 4dkd_C 174 ----------------------------------SIRLKVQKVIPGPPALTLV---PAELVRIRGEAAQIVCSASSVDVN 216 (292)
T ss_dssp ----------------------------------CEEEEEECCCCSSCEEEEE---SSCBCCCSSSCEEEEEEEEESSSC
T ss_pred ----------------------------------EEEEEEeCCCCCCCeEEcc---CCceeEecCCCEEEEEEecCCCCc
Confidence 3344444311 12222211 12344568999999999998776
Q ss_pred CeeEEeeCCeeecCCCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 538 PEISWMKNGAEITDSKACRIFID--EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 538 ~~v~W~~~g~~i~~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+.+.|++++..+........... ...+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|....
T Consensus 217 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp CEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred eEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence 56889999887755433222211 123689999999999999999999999999999999997754
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=248.46 Aligned_cols=275 Identities=15% Similarity=0.224 Sum_probs=186.8
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECcc----CCCeeEEEEcCe--e-------------c---cceeEEE---ecCeeEE
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGV----PTPDIKWYKDDS--L-------------I---KGRNITY---ENNVARF 199 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~----p~p~i~W~~~~~--~-------------~---~~~~~~~---~~~~~~L 199 (803)
+.+...+..+.+.+|+.+.|.|.+.+. +.+.+.|++++. . + ...++.+ .....+|
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 94 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI 94 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence 344455677889999999999999876 455799999541 1 0 0122222 2235679
Q ss_pred EEecCCCCcceEEEEE-EEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccc
Q psy2776 200 TVVNCSESSEGRYTCK-ATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 278 (803)
Q Consensus 200 ~i~~v~~~d~G~Y~C~-a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (803)
.|.+++.+|+|.|+|. +.+..+.....+.|.|...|..
T Consensus 95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~----------------------------------------- 133 (331)
T 3u83_A 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN----------------------------------------- 133 (331)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE-----------------------------------------
T ss_pred EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc-----------------------------------------
Confidence 9999999999999998 5566677777778888765310
Q ss_pred cceeeccccccccceeeeeeccCCCccccccccCCceeeeccc---cceeEEEE-e-cCCceeeEEeecCeeccccceeE
Q psy2776 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHL---GDATFQVE-L-SSPDIQVKWLKKGKEIKESARHI 353 (803)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~C~-~-~~p~~~i~W~~~g~~l~~~~~~~ 353 (803)
.+...+....+.+| +.+.|.|. + +.|.+.+.|++++........
T Consensus 134 -----------------------------~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~-- 182 (331)
T 3u83_A 134 -----------------------------WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQE-- 182 (331)
T ss_dssp -----------------------------EEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEE--
T ss_pred -----------------------------eeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccce--
Confidence 00001222334456 77999997 5 899999999996322211000
Q ss_pred EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCC
Q psy2776 354 ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433 (803)
Q Consensus 354 ~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 433 (803)
.... .|.+. -...|.|.++..+
T Consensus 183 ~~~~---------------~~~~~-------------------------------------------~~~~L~i~~~~~~ 204 (331)
T 3u83_A 183 IRNP---------------NGTVT-------------------------------------------VISRYRLVPSREA 204 (331)
T ss_dssp EECT---------------TSCEE-------------------------------------------EEEEEEECCCGGG
T ss_pred eECC---------------CCcEE-------------------------------------------EEEEEEEEecccc
Confidence 0000 00010 0124888888999
Q ss_pred CceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeec
Q psy2776 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513 (803)
Q Consensus 434 d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~ 513 (803)
|+|.|+|.|.|..|.... .+.|.|..+|.+. ..
T Consensus 205 d~G~Y~C~a~n~~~~~~~------------------------------------------~~~l~V~~~P~~~-----~~ 237 (331)
T 3u83_A 205 HQQSLACIVNYHMDRFKE------------------------------------------SLTLNVQYEPEVT-----IE 237 (331)
T ss_dssp TTCEEEEEEEETTEEEEE------------------------------------------EEECCEEEEEEEE-----EE
T ss_pred CCCEEEEEEecCCCccee------------------------------------------eEEEEEecCCeEE-----Ee
Confidence 999999999999877655 4455555555321 11
Q ss_pred cccceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecCCeEEEEEe-eeccCcCeEEEEEEEcCCCCeE
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIY-SVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~-~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
......+.+|+.+.|.|.+.|.|.|. +.|++++..+.... .+ .+.+|.|. ++..+|+|.|+|.|.|..|..+
T Consensus 238 ~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~----~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~ 311 (331)
T 3u83_A 238 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EA----QNRTLFFKGPINYSLAGTYICEATNPIGTRS 311 (331)
T ss_dssp CCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE----ETTEEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred cCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--ee----cCcEEEEeCCCccccCeEEEEEEEeccccce
Confidence 12234567899999999999999998 99999998886542 11 23579999 9999999999999999999999
Q ss_pred EEEEEEEeeeE
Q psy2776 592 LDLSLQVLGYI 602 (803)
Q Consensus 592 ~s~~l~V~~~p 602 (803)
.++.|.|...+
T Consensus 312 ~~~~l~V~~~~ 322 (331)
T 3u83_A 312 GQVEVNITEAA 322 (331)
T ss_dssp EEEEECCBC--
T ss_pred EEEEEEEeccc
Confidence 99999998754
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=246.36 Aligned_cols=283 Identities=13% Similarity=0.123 Sum_probs=177.3
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..+.... ........|.|.+++.+|+|.|+|.|.|..+
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~ 98 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGRIFQESFNMSPVTTAHAGNYTCRGSHPHS 98 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence 45788887776 568899999999999987 67899999998754321 1122346799999999999999999987432
Q ss_pred -----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 222 -----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 222 -----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.....+.|.|...+.
T Consensus 99 ~~~~~~~s~~~~l~V~~~~~------------------------------------------------------------ 118 (316)
T 3vh8_G 99 PTGWSAPSNPVVIMVTGNHR------------------------------------------------------------ 118 (316)
T ss_dssp SSSBCCCCCCEEEEEECSSC------------------------------------------------------------
T ss_pred CcceecCCCcEEEEEecCCC------------------------------------------------------------
Confidence 223345565544310
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccE
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDI 376 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 376 (803)
.+.+.. .+... +.+|+.++|.|.+..+.+.+.|+|+|..+...........
T Consensus 119 --------~p~~~~-~~~~~-v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~------------------- 169 (316)
T 3vh8_G 119 --------KPSLLA-HPGPL-VKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHD------------------- 169 (316)
T ss_dssp --------CCEEEE-ESCSE-EETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEEET-------------------
T ss_pred --------CCeEEe-cCCCc-cCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeeecC-------------------
Confidence 011111 11122 5679999999999767789999999887753221110000
Q ss_pred EEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccC
Q psy2776 377 GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWP 456 (803)
Q Consensus 377 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~ 456 (803)
......|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 170 ------------------------------------------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~-- 205 (316)
T 3vh8_G 170 ------------------------------------------GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAP-- 205 (316)
T ss_dssp ------------------------------------------TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCC--
T ss_pred ------------------------------------------CCceEEEEECCCChhhCceEEEEEecCCCCccccCC--
Confidence 012345889999999999999999998775322100
Q ss_pred CCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC
Q psy2776 457 GLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP 536 (803)
Q Consensus 457 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p 536 (803)
. ..+.|.|...+..|.+.... ...+.+|+.++|.|.+. .|
T Consensus 206 s-----------------------------------~~~~l~V~~~~~~p~i~~~~----~~~v~~G~~v~L~C~~~-~~ 245 (316)
T 3vh8_G 206 S-----------------------------------DPLDIVVTGPYEKPSLSAQP----GPKVQAGESVTLSCSSR-SS 245 (316)
T ss_dssp C-----------------------------------CCEEEEEECSSCCCEEEEES----CSCCCTTSCCEEEEEES-SC
T ss_pred C-----------------------------------CCEEEEecCCCCCCeEEeCC----CCeecCCCcEEEEEECC-CC
Confidence 0 12334444333333332211 12467899999999998 47
Q ss_pred CCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCC-----CeEEEEEEEEeeeE
Q psy2776 537 RPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAG-----STSLDLSLQVLGYI 602 (803)
Q Consensus 537 ~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-----~~s~s~~l~V~~~p 602 (803)
.+.+.|+|+|..+........... .....|.|.+++ |+|.|+|.|.|..+ ..+..+.|.|.+.|
T Consensus 246 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 246 YDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp CSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred CcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 789999999987654221111111 123789999999 99999999999765 35677778877654
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=243.03 Aligned_cols=286 Identities=17% Similarity=0.253 Sum_probs=195.1
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc-eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA-RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.... ++.+.
T Consensus 11 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~----------------------------------- 55 (305)
T 2nzi_A 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQ----------------------------------- 55 (305)
T ss_dssp CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEE-----------------------------------
T ss_pred ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEE-----------------------------------
Confidence 445677789999999999 89999999999998876432 22111
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
...++...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 56 --------------------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~------------------- 90 (305)
T 2nzi_A 56 --------------------------EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG------------------- 90 (305)
T ss_dssp --------------------------EETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEE-------------------
T ss_pred --------------------------ECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccc-------------------
Confidence 11233456899999999999999999999887654
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|.+..... ........+.+|+.+.|.|.+.|.|.+.+.|++++..+.
T Consensus 91 -----------------------~~~l~V~~~p~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~ 146 (305)
T 2nzi_A 91 -----------------------TASLEVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146 (305)
T ss_dssp -----------------------EEEEEECEEEEECCCHH-HHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCC
T ss_pred -----------------------eEEEEEecCCccCCCcc-ccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECC
Confidence 33444444333211100 011124667889999999999999999999999999998
Q ss_pred CCCcEEEEecCCeEEEEEee-eccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 551 DSKACRIFIDEETSTIAIYS-VVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~-v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
.+.++.+........|.|.+ +..+|+|.|+|.|.|..|....++.|.|...|...
T Consensus 147 ~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p------------------------ 202 (305)
T 2nzi_A 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPP------------------------ 202 (305)
T ss_dssp SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC------------------------
T ss_pred CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCC------------------------
Confidence 88888877777788999999 99999999999999999999999999987654000
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN 709 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~ 709 (803)
...++. +.. .-.+..... .....|....+.|.+.+.|.+...|.+.
T Consensus 203 -------~~~~~~--~~~------------------------~~~v~l~w~-~p~~~g~~~i~~y~v~~~~~~~~~w~~~ 248 (305)
T 2nzi_A 203 -------RGVKVS--DVS------------------------RDSVNLTWT-EPASDGGSKITNYIVEKCATTAERWLRV 248 (305)
T ss_dssp -------EEEEEE--SCC------------------------SSCEEEEEE-CCSCCSBSCEEEEEEEEEETTSCCEEEE
T ss_pred -------CCceee--ecc------------------------CCEEEEEEc-CCccCCCCceeEEEEEEecCCCCccEEC
Confidence 000000 000 000000000 0012355567788888888888888876
Q ss_pred CeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCCCc
Q psy2776 710 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 710 ~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~ 774 (803)
+... ...|.|.++ ...|.|.|+|.|.|.+|....+....+...+..+|.+.
T Consensus 249 ~~~~-------------~~~~~i~~l-~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p~~~ 299 (305)
T 2nzi_A 249 GQAR-------------ETRYTVINL-FGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299 (305)
T ss_dssp EEES-------------SSEEEECSC-CSSCEEEEEEEEEETTEECCCCCCCCCEECCC------
T ss_pred cccc-------------CceEEecCC-CCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCcccccc
Confidence 5432 236889999 78999999999999999886554433322344455554
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=236.74 Aligned_cols=320 Identities=17% Similarity=0.224 Sum_probs=214.5
Q ss_pred eeeccccceeEEEEe-cCCceeeEEeec--Ceeccccc-----eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccce
Q psy2776 316 TLVPHLGDATFQVEL-SSPDIQVKWLKK--GKEIKESA-----RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVS 387 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~~~i~W~~~--g~~l~~~~-----~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 387 (803)
..+.+|+.+.|.|.+ |.|.+.+.|+|+ |..+.... ++.+.
T Consensus 10 ~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~-------------------------------- 57 (389)
T 2jll_A 10 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK-------------------------------- 57 (389)
T ss_dssp EEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEE--------------------------------
T ss_pred eEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEe--------------------------------
Confidence 344559999999999 899999999999 87776421 11111
Q ss_pred eeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
...+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 58 ------------------------------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~---------------- 91 (389)
T 2jll_A 58 ------------------------------GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK---------------- 91 (389)
T ss_dssp ------------------------------ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEE----------------
T ss_pred ------------------------------ccCCcceEEEcccChhhCEEEEEEEEeCCCCcce----------------
Confidence 1124567999999999999999999999988755
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCe
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGA 547 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~ 547 (803)
.+.|.|..+|.+.. ......+.+|+.+.|.|.+.|.|.+.+.|+|+|.
T Consensus 92 --------------------------~~~l~V~~~P~~~~------~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~ 139 (389)
T 2jll_A 92 --------------------------SMYLDIEYAPKFIS------NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKL 139 (389)
T ss_dssp --------------------------EEEEEEEEEEEECC------SCCEEEECTTCCEEEEECEEEESCCEEEEEETTE
T ss_pred --------------------------EEEEEEEeCCEEec------CcceEEeccCCEEEEEEEEEecCCCeEEEEECCc
Confidence 34455555554321 1123467889999999999999999999999999
Q ss_pred eecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEe-----E----eeecc-------
Q psy2776 548 EITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYII-----Q----QQEKN------- 609 (803)
Q Consensus 548 ~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~-----~----~~~~~------- 609 (803)
.+.... ++.+........|.|.++..+|+|.|+|.|.|..|....++.|.|...|. . .....
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p 219 (389)
T 2jll_A 140 VLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219 (389)
T ss_dssp ESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECC
T ss_pred cCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCC
Confidence 987653 66666666778999999999999999999999999999888888866550 0 00111
Q ss_pred -----------cccEEEeee-------eCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 610 -----------SLKFTKVAT-------LDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 610 -----------~~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
.+.|.+... .......+.|.+|.+.+.|.|+|.|.|..|.+..+....+.+.. ..++.
T Consensus 220 ~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~----~~~p~ 295 (389)
T 2jll_A 220 DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP----VREPS 295 (389)
T ss_dssp SCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC----CCCCC
T ss_pred CCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecC----CCCCC
Confidence 233333321 11234679999999999999999999999998877654433221 11344
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec---CCCceE--EeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIV--WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~---p~~~v~--W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.+.. ....+..+.|....... |-..+. |...+.. .........+....+.|.++ .....-.|++
T Consensus 296 ~p~~~~-----~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L-~~~t~Y~~~V 366 (389)
T 2jll_A 296 PPSIHG-----QPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKE---DQWLEKKVQGNKDHIILEHL-QWTMGYEVQI 366 (389)
T ss_dssp CCCEEE-----EEETTTEEEEEECCCCCCSSCCCEEEEEEEC--------CCBCCEECTTCCEEEECSC-CTTCEEEEEE
T ss_pred CCcccc-----ccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCC---cceeEeeccCCcceEEeCCc-CCCCEEEEEE
Confidence 554321 12346678887764211 222233 2221110 00001122333445778887 5566667899
Q ss_pred EEEccCcceeee
Q psy2776 747 VATNELGSATHG 758 (803)
Q Consensus 747 ~a~N~~G~~~~~ 758 (803)
.|.|..|....+
T Consensus 367 ~A~n~~G~s~~s 378 (389)
T 2jll_A 367 TAANRLGYSEPT 378 (389)
T ss_dssp EEEC-CCBCCCE
T ss_pred EEEcCCcCCCce
Confidence 999999986544
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=235.12 Aligned_cols=252 Identities=21% Similarity=0.306 Sum_probs=180.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECc-cCCC--eeEEEEcCeeccceeEEEecCeeEEEEecC---CCCcceE--EE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTP--DIKWYKDDSLIKGRNITYENNVARFTVVNC---SESSEGR--YT 213 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v---~~~d~G~--Y~ 213 (803)
+.+|.+..+ ..+.+|+.+.|.|.+.| .|.| .+.|+|++..+.. .+...+. .|.+..+ +.+|+|. |+
T Consensus 4 ~~~p~~~~~---~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~ 77 (265)
T 2oz4_A 4 ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGND--SFSAKASVSVTAEDEGTQRLT 77 (265)
T ss_dssp SSCCEEECC---SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-EEEECSS--EEEEEEEEEECGGGCEEEEEE
T ss_pred CCCCccccC---ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-eEeeCCC--eEEEEeecccccccCCcceEE
Confidence 345666543 36889999999999998 7877 8999999998875 2233332 4555554 7788774 99
Q ss_pred EEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 214 CKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 214 C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
|.+.|..|....++.|.|...+.
T Consensus 78 C~a~n~~~~~~~~~~l~V~~~p~--------------------------------------------------------- 100 (265)
T 2oz4_A 78 CAVILGNQSQETLQTVTIYSFPA--------------------------------------------------------- 100 (265)
T ss_dssp EEEEETTEEEEEEEEEEEECCCC---------------------------------------------------------
T ss_pred EEEecCCCCcEEEEEEEEeCCCC---------------------------------------------------------
Confidence 99999999888888888876531
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~ 373 (803)
+.+. +....+.+|+.+.|.|.+. |.+.+.| +|.++... +
T Consensus 101 ------------p~~~---~~~~~v~~G~~v~l~C~~~-p~~~i~W--~g~~~~~~--------~--------------- 139 (265)
T 2oz4_A 101 ------------PNVI---LTKPEVSEGTEVTVKCEAH-PRAKVTL--NGVPAQPL--------G--------------- 139 (265)
T ss_dssp ------------CEEE---ESCSEEETTCEEEEEEECC-TTSEEEE--SSCSSSCC--------S---------------
T ss_pred ------------ceee---cCCceecCCCcEEEEEEcc-CCCEEEE--CCEEccCC--------C---------------
Confidence 0000 0112345699999999998 9999999 77777321 1
Q ss_pred ccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc-eeeeee
Q psy2776 374 TDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA-GTAETR 452 (803)
Q Consensus 374 g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~-g~~~~~ 452 (803)
....|.|..+..+|.|.|+|.|.|.. |.....
T Consensus 140 -----------------------------------------------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~ 172 (265)
T 2oz4_A 140 -----------------------------------------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 172 (265)
T ss_dssp -----------------------------------------------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEE
T ss_pred -----------------------------------------------CcEEEEEccccccCCceEEEEEEcCCCCCcccc
Confidence 11236778888889999999998544 544421
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
. ..+.|.|..+|.+... ..+....+.+|+.+.|.|.+
T Consensus 173 s---------------------------------------~~~~l~V~~~p~~~~~----~~p~~~~v~~g~~~~l~C~~ 209 (265)
T 2oz4_A 173 N---------------------------------------QTRELRVLYGPRLDER----DCPGNWTWPENSQQTPMCQA 209 (265)
T ss_dssp E---------------------------------------EEEEEEEEEEEECCGG----GSCSEEEEETTCEECCCCCC
T ss_pred c---------------------------------------ccEEEEEEeCCccccc----cCCCccEEcCCCeEEEEeEC
Confidence 1 1445556665554222 11235678899999999999
Q ss_pred cCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 533 ~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|+|.|.+.|+|+|..+.... . +..+..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 210 ~g~P~p~i~W~~~~~~~~~~g-----------~--~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 210 WGNPLPELKCLKDGTFPLPIG-----------E--SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EEESCCEEEEEETTTEECCTT-----------S--CEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccCCCCeEEEEECCcccCCCC-----------c--EEEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 999999999999997332211 1 124788999999999999999999999999865
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-25 Score=215.18 Aligned_cols=180 Identities=29% Similarity=0.478 Sum_probs=158.7
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.... ++.+....+...|.|.++..+|+|.|+|.|.|..|....+
T Consensus 13 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~ 92 (194)
T 2a38_A 13 QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92 (194)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEE
Confidence 35788999999999999999999999999999887663 5666666778899999999999999999999999988888
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|...+ .+|
T Consensus 93 ~~l~v~~~~--------------------------------------------------------------------~~p 104 (194)
T 2a38_A 93 AELLVKAET--------------------------------------------------------------------APP 104 (194)
T ss_dssp EEEEEECCC--------------------------------------------------------------------EEE
T ss_pred EEEEEccCC--------------------------------------------------------------------CCC
Confidence 888876421 156
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 105 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g 183 (194)
T 2a38_A 105 NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEA-YPEDSGTYSVNATNSVG 183 (194)
T ss_dssp EEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEE-CGGGCEEEEEEEEETTE
T ss_pred EEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCC-ChhcCeEEEEEEEeCCC
Confidence 66666667789999999999999999999999999999999888988888888889999999 78999999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
..+.++.|.|+
T Consensus 184 ~~~~~~~l~V~ 194 (194)
T 2a38_A 184 RATSTAELLVQ 194 (194)
T ss_dssp EEEEEEEEEEC
T ss_pred ceEEEEEEEEC
Confidence 99999988873
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=240.42 Aligned_cols=331 Identities=14% Similarity=0.160 Sum_probs=191.4
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccC----CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-C
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTG----PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-P 172 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~----~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p 172 (803)
...|.|.+++.+|+|.|.|.+.+..|.. ...... .+.+.. ....+|.+..... ..+.+|+.+.|.|.+.|. |
T Consensus 79 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~l~V~~-~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P 155 (475)
T 1iga_A 79 TAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGT-LVTVSS-ASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFP 155 (475)
T ss_pred eEEEEECCCChhhCEEEEEEEeccCCCccceeeecCce-EEEecc-CCCcCCeEEecCc-cccCCCCeEEEEEEEeeecC
Confidence 4689999999999999999999876521 111122 233321 1123455544322 223689999999999986 6
Q ss_pred C-C-eeEEEEcCeecccee--EEE--ecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccce
Q psy2776 173 T-P-DIKWYKDDSLIKGRN--ITY--ENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARH 242 (803)
Q Consensus 173 ~-p-~i~W~~~~~~~~~~~--~~~--~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~ 242 (803)
. | .|.|++++....... ... .++ ...|.|.++..+|+|.|+|.|.|..+. ..+..+.+.+.....
T Consensus 156 ~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~---- 230 (475)
T 1iga_A 156 QEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPP---- 230 (475)
T ss_pred CCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccCcc----
Confidence 5 5 899999875322111 001 111 236889999999999999999998873 223333322210000
Q ss_pred eEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecccc
Q psy2776 243 IITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLG 322 (803)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 322 (803)
..++.|.. ........+.+....|....+.+|+
T Consensus 231 --------------------~~~~~~~~---------------------------~~~~~~~~p~v~~~~p~~~~~~~G~ 263 (475)
T 1iga_A 231 --------------------TPSPSTPP---------------------------TPSPSCCHPRLSLHRPALEDLLLGS 263 (475)
T ss_pred --------------------cccccccc---------------------------cCCCCCCCcEEEEcCCChHHhccCC
Confidence 00000000 0000000111111223333356799
Q ss_pred ceeEEEEe-cCCc---eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCc
Q psy2776 323 DATFQVEL-SSPD---IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGG 398 (803)
Q Consensus 323 ~~~l~C~~-~~p~---~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~ 398 (803)
.+.|.|.+ +.++ +.+.| ++..+........ .....|.|.
T Consensus 264 ~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~--------------~~~~~g~~~--------------------- 306 (475)
T 1iga_A 264 EANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPP--------------ERDLCGCYS--------------------- 306 (475)
T ss_pred ceEEEEEEEcccCCCceEEEE--CCCCcCCccccCc--------------eECCCCCEE---------------------
Confidence 99999999 5533 69999 4443332110000 000011111
Q ss_pred eeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchh
Q psy2776 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMK 478 (803)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 478 (803)
....|.|.++..+|.|.|+|.|.|..+.....
T Consensus 307 ----------------------~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~-------------------------- 338 (475)
T 1iga_A 307 ----------------------VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLT-------------------------- 338 (475)
T ss_pred ----------------------EEEEEEEchHHhccCCcEEEEEEcCCCCCceE--------------------------
Confidence 23458999999999999999999988765431
Q ss_pred hhhcccccccccccceeee---ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCC
Q psy2776 479 RVLQKLAVPFSYKTRTTNL---QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSK 553 (803)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~l---~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~ 553 (803)
..| .+..+|.+ .+... ....+.+|+.+.|.|.+.|.++ +.+.|+|+|..+..+.
T Consensus 339 ----------------~~v~~~~~~~~P~v---~~~~~--~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~ 397 (475)
T 1iga_A 339 ----------------ATLSKSGNTFRPEV---HLLPP--PSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK 397 (475)
T ss_pred ----------------EEeecCCCCCCCeE---EEECC--ChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCc
Confidence 111 12233321 11111 1223578999999999999643 5899999999887653
Q ss_pred cEE--EEec---CC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 554 ACR--IFID---EE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 554 ~~~--~~~~---~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
... .... .+ .+.|.|.....+|.|.|+|.|.|....
T Consensus 398 ~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 398 YLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred eeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 111 1111 11 246778888788999999999998654
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-27 Score=262.32 Aligned_cols=325 Identities=14% Similarity=0.197 Sum_probs=193.7
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC-e
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP-D 175 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p-~ 175 (803)
...|.|.+++.+|+|.|+|.+.+..+.. .... .+.+.... ..+|.+........+.+|+.++|.|.+.|. |.| .
T Consensus 77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~--~~~~-~l~V~~~~-~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~ 152 (434)
T 1igy_B 77 TANIHLSSLTSDDSAVYYCVREGEVPYW--GQGT-TVTVSSAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT 152 (434)
T ss_dssp BBCEEECSBCGGGCSEECCCCSSSSCCC--CCCE-ECEECCSC-CBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCE
T ss_pred EEEEEECCCChHHCEEEEEEEEcccccc--CCce-EEEEccCC-CCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeE
Confidence 3579999999999999999998854321 2222 22332211 234444432223345789999999999986 776 8
Q ss_pred eEEEEcCeecccee--EEEe-c---CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecc
Q psy2776 176 IKWYKDDSLIKGRN--ITYE-N---NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGT 249 (803)
Q Consensus 176 i~W~~~~~~~~~~~--~~~~-~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~ 249 (803)
+.|++++..+.... .... + ....|.|.++..+| |.|+|.|.|..+.......+.+........ .
T Consensus 153 v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~-~-------- 222 (434)
T 1igy_B 153 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPC-I-------- 222 (434)
T ss_dssp EEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCC-C--------
T ss_pred EEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccc-c--------
Confidence 99999987532110 0011 1 12469999999999 999999999998765444443321100000 0
Q ss_pred eeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCcee-eeccccceeEEE
Q psy2776 250 QRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVT-LVPHLGDATFQV 328 (803)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~l~C 328 (803)
. ..... +.+....|... .+.+|+.+.|.|
T Consensus 223 ------------------------------------------------~-~~~~~-p~v~~~~p~~~~~v~~G~~~~L~C 252 (434)
T 1igy_B 223 ------------------------------------------------C-TVPEV-SSVFIFPPKPKDTLLITVTPKVTC 252 (434)
T ss_dssp ------------------------------------------------C-CCSSS-CCEEEECCCHHHHHSTTSCCEEEE
T ss_pred ------------------------------------------------C-CCCcC-cEEEEeCCChHHhcccCCCcEEEE
Confidence 0 00000 11111112212 156799999999
Q ss_pred Ee-cCC----ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeee
Q psy2776 329 EL-SSP----DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFES 403 (803)
Q Consensus 329 ~~-~~p----~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (803)
.+ +.+ .+.+.|+|+|..+......... ....|.|
T Consensus 253 ~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~--------------~~~~~~~--------------------------- 291 (434)
T 1igy_B 253 VVVDISKDDPEVQFSWFVDNVEVHTAQTQPRE--------------EQFNSTF--------------------------- 291 (434)
T ss_dssp EECCCCSSCCCCCBCBBSSSCCBCCCSCCCCC--------------CCCSSSC---------------------------
T ss_pred EEeccccCCCCeEEEEEeCCcccCCcccCcce--------------eCCCCcE---------------------------
Confidence 99 652 4689999998777532211000 0000111
Q ss_pred eecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcc
Q psy2776 404 KYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQK 483 (803)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 483 (803)
.....|.|.++..+|.|.|+|.|.|..|......
T Consensus 292 ----------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~------------------------------ 325 (434)
T 1igy_B 292 ----------------RVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEK------------------------------ 325 (434)
T ss_dssp ----------------CCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCC------------------------------
T ss_pred ----------------EEEEEEEECHHHccCCCcEEEEEECCCCCCceeE------------------------------
Confidence 0123488999999999999999999887653311
Q ss_pred cccccccccceeee--ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEe
Q psy2776 484 LAVPFSYKTRTTNL--QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFI 559 (803)
Q Consensus 484 ~~~~~~~~~~~~~l--~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~ 559 (803)
.+.+ .+..+|.+ .+.... .....|+.+.|.|.+.|.++ +.++|+|+|..+..........
T Consensus 326 ----------~v~~~~~~~~~P~v---~~~~~~---~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 389 (434)
T 1igy_B 326 ----------TISKTKGKPRAPQV---YTIPPP---KEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIM 389 (434)
T ss_dssp ----------CCCCCCSCCBCCCC---EEECCC---SSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCC
T ss_pred ----------EEeccCCCCcCCEE---EEECCC---HHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceecccee
Confidence 1111 23334432 111111 11235778999999999644 3899999999885432111111
Q ss_pred cCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 560 DEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 560 ~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+ .+.|.|.....+|.|.|+|.|.|....
T Consensus 390 ~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 390 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp CSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred CCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 112 246778777778899999999998654
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-25 Score=230.37 Aligned_cols=265 Identities=19% Similarity=0.292 Sum_probs=185.6
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEE---EecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NIT---YENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
.+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+... ++. ..++...|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 5788888889999999999999999999999999999999887632 222 23455689999999999999999999
Q ss_pred cCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 218 NEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 218 n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
|..|....++.|.|...+....
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~---------------------------------------------------------- 104 (305)
T 2nzi_A 83 NQGGSVSGTASLEVEVPAKIHL---------------------------------------------------------- 104 (305)
T ss_dssp ETTEEEEEEEEEEECEEEEECC----------------------------------------------------------
T ss_pred cCCCCccceEEEEEecCCccCC----------------------------------------------------------
Confidence 9999888888888876631110
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccE
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDI 376 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 376 (803)
+.++. .+....+..|+.+.|.|.+ +.|.+.+.|++++..+..+.++.+...+
T Consensus 105 --------~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~------------------ 157 (305)
T 2nzi_A 105 --------PKTLE-GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR------------------ 157 (305)
T ss_dssp --------CHHHH-SSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECS------------------
T ss_pred --------Ccccc-ccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcC------------------
Confidence 00011 1123345569999999999 8999999999999888765554443322
Q ss_pred EEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEe-ccCCCceeEEEEeeCCceeeeeeccc
Q psy2776 377 GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVN-CSESSEGRYTCKATNEAGTAETRTMW 455 (803)
Q Consensus 377 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~~~~g~~~~~~~~ 455 (803)
+...|.|.+ +..+|.|.|+|.|.|..|....
T Consensus 158 --------------------------------------------~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~---- 189 (305)
T 2nzi_A 158 --------------------------------------------SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK---- 189 (305)
T ss_dssp --------------------------------------------SEEEEEETTCCCSTTCEEEEEEEEETTEEEEE----
T ss_pred --------------------------------------------CceEEEEecCCccCccEEEEEEEEeCCCceee----
Confidence 234577777 8888999999999999988776
Q ss_pred CCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeee-ccccceEE------eecceeEE
Q psy2776 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVD-SNLKSQRL------SVKSQWKV 528 (803)
Q Consensus 456 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~~~~~v------~~g~~v~l 528 (803)
.+.|.|..+|..|...... .......+ ..|....+
T Consensus 190 --------------------------------------~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~ 231 (305)
T 2nzi_A 190 --------------------------------------TVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKIT 231 (305)
T ss_dssp --------------------------------------EEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEE
T ss_pred --------------------------------------EEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCcee
Confidence 3333343333332211000 00000000 12344455
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.|.+...+.+...|.+.+... ...|.|.++...|.|.|+|.|.|..|...
T Consensus 232 ~y~v~~~~~~~~~w~~~~~~~-------------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~ 281 (305)
T 2nzi_A 232 NYIVEKCATTAERWLRVGQAR-------------ETRYTVINLFGKTSYQFRVIAENKFGLSK 281 (305)
T ss_dssp EEEEEEEETTSCCEEEEEEES-------------SSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred EEEEEEecCCCCccEECcccc-------------CceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence 666666666666666544321 35789999999999999999999988744
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=209.98 Aligned_cols=182 Identities=24% Similarity=0.314 Sum_probs=155.3
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.+.|.+.+.|+++|..+... .++.+.. ..+...|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 91 (197)
T 2j8h_A 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 91 (197)
T ss_dssp CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred CccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEE
Confidence 4678899999999999999999999999999988764 4555543 3445699999999999999999999999998999
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|..+|.. ..|
T Consensus 92 ~~l~V~~~p~~------------------------------------------------------------------~~~ 105 (197)
T 2j8h_A 92 ASLEVEVPAKI------------------------------------------------------------------HLP 105 (197)
T ss_dssp EEEEEEEEEEE------------------------------------------------------------------CCS
T ss_pred EEEEEcCCCcC------------------------------------------------------------------CCC
Confidence 99998775510 023
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEec-CCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE-ADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~-v~~~~D~G~Y~C~a~N~~ 752 (803)
.++..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.+ + ..+|+|.|+|.|.|.+
T Consensus 106 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~~d~G~Y~C~a~N~~ 184 (197)
T 2j8h_A 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV-ERKDAGFYVVCAKNRF 184 (197)
T ss_dssp SCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCC-CGGGCEEEEEEEEETT
T ss_pred ccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCC-CcccCEeEEEEEEeCC
Confidence 3334445677889999999999999999999999999999988888888877888999999 8 7899999999999999
Q ss_pred cceeeeEEEEEE
Q psy2776 753 GSATHGARVTVD 764 (803)
Q Consensus 753 G~~~~~~~l~V~ 764 (803)
|..+.++.|.|.
T Consensus 185 g~~~~~~~l~V~ 196 (197)
T 2j8h_A 185 GIDQKTVELDVA 196 (197)
T ss_dssp EEEEEEEEEEEE
T ss_pred CcEeEEEEEEEe
Confidence 999999988874
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=208.14 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=147.5
Q ss_pred eEEee-cceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 518 QRLSV-KSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 518 ~~v~~-g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
..+.+ |+.+.|.|.+.+.|. +.+.|+|+|..+....... ....|.|.++..+|+|.|+|.|.|. |..+.++
T Consensus 12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~ 85 (190)
T 2wv3_A 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANA 85 (190)
T ss_dssp EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEE
T ss_pred EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEEeC-CcccccE
Confidence 44556 999999999999887 8899999999987654322 4689999999999999999999999 8888888
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|.. +|.
T Consensus 86 ~l~V~~-----------------------------------------------------------------------~p~ 94 (190)
T 2wv3_A 86 TIEVKA-----------------------------------------------------------------------APD 94 (190)
T ss_dssp EEEEEC-----------------------------------------------------------------------CCE
T ss_pred EEEEec-----------------------------------------------------------------------CCc
Confidence 888866 566
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeecc---CCCCeEEEeeCceEEEEEecCCC-CCCceeEEEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL---SSPKKREIFDGENIILELKEADS-ETDAGDYKVVA 748 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l~---~~~~~~~~~~~~~~~L~i~~v~~-~~D~G~Y~C~a 748 (803)
+...+....+.+|+.+.|.|.+.|.|.|.+.|++ +|.++. .+.++.+..++...+|.|.++ + .+|+|.|+|.|
T Consensus 95 ~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~~d~G~Y~C~a 173 (190)
T 2wv3_A 95 ITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNL-QITEDPGEYECNA 173 (190)
T ss_dssp EEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSC-CTTTSCEEEEEEE
T ss_pred ccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEec-cccCCCEEEEEEE
Confidence 7766777789999999999999999999999999 787765 566777777777789999999 7 69999999999
Q ss_pred EccCcceeeeEEEEEEe
Q psy2776 749 TNELGSATHGARVTVDV 765 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~ 765 (803)
.|.+|..+.++.|.|+|
T Consensus 174 ~N~~g~~~~~~~l~V~V 190 (190)
T 2wv3_A 174 TNSIGSASVSTVLRVRV 190 (190)
T ss_dssp ECSSCEEEEEEEEEEEC
T ss_pred EecCCcceeEEEEEEEC
Confidence 99999999999999864
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=206.11 Aligned_cols=180 Identities=24% Similarity=0.323 Sum_probs=156.0
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 15 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~ 94 (197)
T 3lcy_A 15 KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSK 94 (197)
T ss_dssp CCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEE
Confidence 46788999999999999999999999999999998888888887777789999999999999999999999999888999
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|...|.. .+.
T Consensus 95 l~v~~~p~~-------------------------------------------------------------------~~~- 106 (197)
T 3lcy_A 95 LLLQATPQF-------------------------------------------------------------------HPG- 106 (197)
T ss_dssp EEEEEEEEE-------------------------------------------------------------------CTT-
T ss_pred EEEEcCCCC-------------------------------------------------------------------CCC-
Confidence 988775500 000
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCC-CCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS-ETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~-~~D~G~Y~C~a~N~~G~ 754 (803)
........+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++ . .+|+|.|+|.|.|.+|.
T Consensus 107 ~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~~d~G~Y~C~a~n~~g~ 185 (197)
T 3lcy_A 107 YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNV-QRKTHAGKYKVQLSNVFGT 185 (197)
T ss_dssp SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSC-CHHHHCEEEEEEEECSSCE
T ss_pred ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccc-cchhhCceEEEEEEcCcCc
Confidence 011234567889999999999999999999999999999888888888777889999999 6 37999999999999999
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
.+..+.|.|.
T Consensus 186 ~~~~~~l~V~ 195 (197)
T 3lcy_A 186 VDAILDVEIQ 195 (197)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEEe
Confidence 9999988885
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=210.70 Aligned_cols=189 Identities=19% Similarity=0.266 Sum_probs=144.5
Q ss_pred ceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecC--CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDE--ETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~--~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
...+.+|+.+.|.|.+.+ .|.|.++|+|||.+|..+.++.+..+. +...|.|.++..+|+|.|+|.|.| |.+...
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~ 88 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNH 88 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEE
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEE
Confidence 467899999999999864 799999999999999988887777654 456899999999999999999999 666555
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccC--CCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL--GSPGQ 671 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~--~~~~~ 671 (803)
..+.+.... ...+........ .....
T Consensus 89 ~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~ 116 (207)
T 3rbs_A 89 STVVLVGDV----------------------------------------------------FKKLQKEAEFQRQEWIRKQ 116 (207)
T ss_dssp EEEEECTHH----------------------------------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEccc----------------------------------------------------hhhhcccccccccccccCC
Confidence 554332100 000000000000 00012
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.|...+ ...+.+|+.+.|.|.+.|. |.|.+.|+|||.+|..+.++ .......+|.|.++ +.+|+|.|+|.|.|
T Consensus 117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 192 (207)
T 3rbs_A 117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEF-SKKDAGIYEVILKD 192 (207)
T ss_dssp SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTC-CGGGCEEEEEEEEE
T ss_pred CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCC-CcccCEEEEEEEEc
Confidence 67787766 4788999999999999999 99999999999999877654 23345568999999 79999999999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
.+|.++.++.|++
T Consensus 193 ~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 193 DRGKDKSRLKLVD 205 (207)
T ss_dssp TTEEEEEEEEECC
T ss_pred CCCEEEEEEEEec
Confidence 9999999998875
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-25 Score=215.57 Aligned_cols=169 Identities=13% Similarity=0.078 Sum_probs=134.4
Q ss_pred ceEEeecceeEEEEE---EcCcCCCeeEEeeCCeeecC-----------------CCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVK---YFGFPRPEISWMKNGAEITD-----------------SKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~---~~g~p~~~v~W~~~g~~i~~-----------------~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
...+.+|+.+.|.|. +.+.|.+.+.|+|+|..+.. ..++.+....+...|.|.++..+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 356889999999995 56789999999998743211 1234455566778999999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
|.|+|.|.|..|..+..+.|.|..
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~-------------------------------------------------------- 105 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVK-------------------------------------------------------- 105 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE--------------------------------------------------------
T ss_pred eEEEEEEEcCCCcEEEEEEEEecC--------------------------------------------------------
Confidence 999999999999999999999866
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeec----cCCCCeEEEeeCceEEEEE
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL----LSSPKKREIFDGENIILEL 732 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l----~~~~~~~~~~~~~~~~L~i 732 (803)
||.+...+....+.+|+++.|.|.+.|.|.|.+.|++++..+ ..+.++.+..++....|.|
T Consensus 106 ---------------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i 170 (203)
T 4fa8_A 106 ---------------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVD 170 (203)
T ss_dssp ---------------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEE
T ss_pred ---------------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEE
Confidence 455656666778889999999999999999999999876543 2345666666777777888
Q ss_pred ecCCCCCCceeEEEEEEccCcceee
Q psy2776 733 KEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
.++ +.+|+|.|+|+|+|.+|++..
T Consensus 171 ~~v-~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 171 LSL-PKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp EEE-CSSCCCCEEEEEESSSCEEEE
T ss_pred CCC-CHHHCEEEEEEEEcCCCEEEE
Confidence 899 789999999999999999875
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=208.86 Aligned_cols=186 Identities=25% Similarity=0.351 Sum_probs=151.5
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEe-cCCeEEEEEeee-ccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI-DEETSTIAIYSV-VRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~-~~~~~~L~i~~v-~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+....... ...+..|.|.++ +.+|+|.|+|.|.|..|..+.+
T Consensus 14 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~ 93 (212)
T 2yd6_A 14 VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS 93 (212)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEE
T ss_pred ceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEE
Confidence 35778999999999999999999999999999987654333332 235678999999 5999999999999999998888
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|...+ ..+...|
T Consensus 94 ~~l~V~~~~----------------------------------------------------------------~~~~~~p 109 (212)
T 2yd6_A 94 TRLTVLRED----------------------------------------------------------------QIPRGFP 109 (212)
T ss_dssp EEEEEECGG----------------------------------------------------------------GCCTTCC
T ss_pred EEEEEeccC----------------------------------------------------------------ccCCCcc
Confidence 888886532 0112357
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC---CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS---PKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~---~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|.++... .++.....+....|.|.++ +.+|+|.|+|.|.|
T Consensus 110 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N 188 (212)
T 2yd6_A 110 TIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS-EESDQGKYECVATN 188 (212)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSC-CGGGCEEEEEEEEE
T ss_pred eeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCC-CcccCEEEEEEEEC
Confidence 7777777788999999999999999999999999999998754 4566666667789999999 79999999999999
Q ss_pred cCcce-eeeEEEEEEee
Q psy2776 751 ELGSA-THGARVTVDVE 766 (803)
Q Consensus 751 ~~G~~-~~~~~l~V~~~ 766 (803)
.+|.. +..+.|.|.+.
T Consensus 189 ~~G~~~s~~a~l~~~~~ 205 (212)
T 2yd6_A 189 SAGTRYSAPANLYVRGT 205 (212)
T ss_dssp TTEEEECCCEEEEEEC-
T ss_pred CCCccccccccEEEEec
Confidence 99998 56678888653
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=208.78 Aligned_cols=186 Identities=25% Similarity=0.419 Sum_probs=151.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec-CCCcEEEEec-CCeEEEEEeeecc-CcCeEEEEEEEcCCCC-eE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT-DSKACRIFID-EETSTIAIYSVVR-ADTSTYTVTATNAAGS-TS 591 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~-~~~~~~~~~~-~~~~~L~i~~v~~-~dsG~Y~C~a~n~~g~-~s 591 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+. ...++.+... .+...|.|.++.. +|+|.|+|.|.|..|. .+
T Consensus 14 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~ 93 (212)
T 2yd1_A 14 QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVS 93 (212)
T ss_dssp CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEE
T ss_pred CceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEE
Confidence 45788999999999999999999999999999987 4466666544 3448999999999 9999999999999998 78
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|...+ ..+..
T Consensus 94 ~~~~l~V~~~~----------------------------------------------------------------~~~~~ 109 (212)
T 2yd1_A 94 ADATLTIYEGD----------------------------------------------------------------KTPAG 109 (212)
T ss_dssp EEEEEEEECTT----------------------------------------------------------------CSCTT
T ss_pred eeEEEEEeccc----------------------------------------------------------------CCCCC
Confidence 88888886532 01122
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..........++ .|.|.++ +.+|+|.|+|.|.|.
T Consensus 110 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~---~L~i~~v-~~~d~G~Y~C~a~N~ 185 (212)
T 2yd1_A 110 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENS-REEDQGKYECVAENS 185 (212)
T ss_dssp CCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETT---EEEECSC-CGGGCEEEEEEEEET
T ss_pred CCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCC---eEEEccC-ChhhCEEEEEEeecC
Confidence 577887777788999999999999999999999999999998764433333332 7999999 799999999999999
Q ss_pred Ccceeee-EEEEEEeeccC
Q psy2776 752 LGSATHG-ARVTVDVEKVG 769 (803)
Q Consensus 752 ~G~~~~~-~~l~V~~~~~~ 769 (803)
+|..... +.|.|+.....
T Consensus 186 ~G~~~s~~~~l~V~~~~~~ 204 (212)
T 2yd1_A 186 MGTEHSKATNLYVKVRRVG 204 (212)
T ss_dssp TEEEECCCEEEEEEC---C
T ss_pred CCceeEEEEEEEEEecccc
Confidence 9999765 89999765443
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-24 Score=228.14 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=136.4
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
.|.|.+...+|.|.|+|.|.|..+...... .+.+...+
T Consensus 73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~------------------------------------------~~~~~~~~ 110 (323)
T 2wqr_A 73 ELTLSQKHWLSDRTYTCQVTYQGHTFEDST------------------------------------------KKCADSNP 110 (323)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTEEEEEEE------------------------------------------CCCCCSSG
T ss_pred EEEEcHHHcCCCCcEEEEEEeCCCCcceee------------------------------------------ecCCCCCC
Confidence 488888888899999999999876554321 00000000
Q ss_pred CCccceeeeccccceEEeecceeEEEEEEcCcC-CC---eeEEeeCC-eeecCCCcEEEEecC----CeEEEEEeeeccC
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP-RP---EISWMKNG-AEITDSKACRIFIDE----ETSTIAIYSVVRA 574 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p-~~---~v~W~~~g-~~i~~~~~~~~~~~~----~~~~L~i~~v~~~ 574 (803)
..+. +....+....+.+|+.+.|.|.+.|.+ .+ .+.|+|++ ..+............ ..+.|.|.++..+
T Consensus 111 ~~p~--v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~ 188 (323)
T 2wqr_A 111 RGVS--AYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWI 188 (323)
T ss_dssp GGCE--EEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHH
T ss_pred CCCE--EEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHcc
Confidence 0111 111111233467899999999998864 56 89999974 444332221111111 2358999999999
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcc
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~ 654 (803)
|+|.|+|.|.|..+.......+.+..
T Consensus 189 D~G~Y~C~a~n~~~~~~~~~~v~~~~------------------------------------------------------ 214 (323)
T 2wqr_A 189 EGETYQCRVTHPHLPRALMRSTTKTS------------------------------------------------------ 214 (323)
T ss_dssp TTCCEEEEEECTTSSSCEEEEECCCC------------------------------------------------------
T ss_pred CCCCEEEEEECCCCCCCeeeEEEccC------------------------------------------------------
Confidence 99999999999865433333222110
Q ss_pred ceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEE-----EeeC--
Q psy2776 655 TELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE-----IFDG-- 725 (803)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~-----~~~~-- 725 (803)
....+|.+...+.......|+.++|.|.+.|. |.+ .|.|+++|.+|..+. +.. ..++
T Consensus 215 -------------~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~ 280 (323)
T 2wqr_A 215 -------------GPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGF 280 (323)
T ss_dssp -------------SCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSE
T ss_pred -------------CCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcE
Confidence 00114554433222222239999999999985 443 799999999886432 111 1122
Q ss_pred -ceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 726 -ENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 726 -~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
....|.|..+ ..+|+|.|+|.|.|..+.
T Consensus 281 ~~~s~L~i~~~-~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 281 FVFSRLEVTRA-EWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEEEEEHH-HHHHCCCEEEEEECTTST
T ss_pred EEEEEEEEChH-HccCCCEEEEEEEeCCCC
Confidence 1357999998 678999999999999887
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=204.65 Aligned_cols=194 Identities=19% Similarity=0.276 Sum_probs=151.4
Q ss_pred eecceeEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 521 SVKSQWKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
-.++.+.|.|.+.+. |.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence 357889999999886 5789999999999998888888777777899999999999999999999998888777777664
Q ss_pred eeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecc
Q psy2776 600 GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679 (803)
Q Consensus 600 ~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~ 679 (803)
..+.. .................++.+...+
T Consensus 95 ~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~p~~~~~~~ 124 (212)
T 2r15_A 95 AYDEA--------------------------------------------------YAEFQRLKQAAIAEKNRARVLGGLP 124 (212)
T ss_dssp HHHHH--------------------------------------------------HHHHHHHHHHHHHHHHSCEEEEBCC
T ss_pred eccch--------------------------------------------------hhhccccCcccccccCCCcccccCC
Confidence 31100 0000000000000001133444445
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+++|.++..+.++.+... +....|.|.++ +.+|+|.|+|.|.|.+|..+..
T Consensus 125 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~g~~~~~ 203 (212)
T 2r15_A 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGV-STADSGKYGLVVKNKYGSETSD 203 (212)
T ss_dssp SEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSC-CGGGCEEEEEEEEETTEEEEEE
T ss_pred CcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCc-chHHCeEEEEEEEcCCCcEEEE
Confidence 567899999999999999999999999999999998888877776 66789999999 7999999999999999999999
Q ss_pred EEEEEEe
Q psy2776 759 ARVTVDV 765 (803)
Q Consensus 759 ~~l~V~~ 765 (803)
+.|.|.+
T Consensus 204 ~~l~V~~ 210 (212)
T 2r15_A 204 FTVSVFI 210 (212)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9998854
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-24 Score=228.06 Aligned_cols=242 Identities=13% Similarity=0.131 Sum_probs=139.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|+|.|.|..+.... ...|.|.
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~------------------------------------------~~~l~V~ 114 (344)
T 1za6_B 77 STAYVELSSLRSEDTAVYFCTRSLNMAYWGQ------------------------------------------GTLVTVS 114 (344)
T ss_dssp TEEEEEECSCCGGGCEEEEEEETTTTCEECC------------------------------------------CEEEEEC
T ss_pred CEEEEEECCCCcccCEEEEEEEecCcceecC------------------------------------------cEEEEEe
Confidence 4578999999999999999999995433222 2233443
Q ss_pred -CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC----eEEEEEeeecc
Q psy2776 501 -SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE----TSTIAIYSVVR 573 (803)
Q Consensus 501 -~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~ 573 (803)
.++..|.+..... ...+.+|+.+.|.|.+.|. |. +.+.|+|+|..+...........++ .+.|.|.++..
T Consensus 115 ~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 191 (344)
T 1za6_B 115 SASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL 191 (344)
T ss_dssp SSCCBCCEEEEECC---SCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHH
T ss_pred cCCCCCCeEEEccc---cccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHc
Confidence 2222222221111 1224689999999999987 54 7999999997642110000011111 25799999988
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+| |.|+|.|.|..+.......+.+..... + ..+. .|.+...++
T Consensus 192 ~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~------------------------~------~~~~-~~~~~~~l~----- 234 (344)
T 1za6_B 192 GT-QTYICNVNHKPSNTKVDKKVEPKSCDK------------------------T------HTCP-PCGGGSSGG----- 234 (344)
T ss_dssp HH-BCEEEEEEEGGGTEEEEEEECCCCC----------------------------------------------------
T ss_pred CC-CcEEEEEEeCCCCccceEeeccccccc------------------------c------cccC-CCCCCcccc-----
Confidence 88 999999999988755444333211000 0 0000 000000000
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCCeEE--EeeCc---
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKKRE--IFDGE--- 726 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~~--~~~~~--- 726 (803)
.......+|.+...........|+.++|.|.+.|. | .+.+.|++||.++........ ..++.
T Consensus 235 -----------~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~ 303 (344)
T 1za6_B 235 -----------GSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL 303 (344)
T ss_dssp ---------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEE
T ss_pred -----------ccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEE
Confidence 00011225655544332222346679999999996 4 358999999998864322211 22232
Q ss_pred eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 727 NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 727 ~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
...|.|... ..+|+|.|+|.|.|......
T Consensus 304 ~s~l~i~~~-~~~~~g~YtC~a~~~~l~~~ 332 (344)
T 1za6_B 304 YSKLTVDKS-RWQQGNVFSCSVMHEALHNH 332 (344)
T ss_dssp EEEEEECHH-HHHTTCEEEEEEECTTSTTS
T ss_pred EEEEEEChH-HccCCCeEEEEEEcCCCCCC
Confidence 234666665 34679999999999876543
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-22 Score=222.01 Aligned_cols=374 Identities=16% Similarity=0.180 Sum_probs=193.5
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCc-----------cCCCcceeeEEEEcCCCCCCCCeeec-cCcCeeeecCCcEEEE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIG-----------TGPASHNTRYVVVKAPVDAEAPVIQE-PLKDSVAGFQSSVTLE 165 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g-----------~~~~s~~~~~~~~~~~~~~~~p~i~~-~~~~~~v~~G~~~~L~ 165 (803)
...|.|.+++.+|+|.|.|.+.+..+ ....... ..+.+... ...+|.+.. .+......+|+.+.|.
T Consensus 79 ~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~V~~~-~~~~P~i~~~~~~~~~~~~~~~v~L~ 156 (512)
T 1zvo_C 79 QFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQG-TTVHVSSA-PTKAPDVFPIISGCRHPKDNSPVVLA 156 (512)
T ss_pred EEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCc-eEEEeccc-CCcCCeEEeccCCcccccCCCeEEEE
Confidence 47899999999999999999987642 1011112 22333211 123555542 2221112257899999
Q ss_pred EEECcc-CCC-eeEEEEcCeeccc--e-eEEEecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEE---------
Q psy2776 166 CVVSGV-PTP-DIKWYKDDSLIKG--R-NITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSC--------- 227 (803)
Q Consensus 166 C~~~g~-p~p-~i~W~~~~~~~~~--~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~--------- 227 (803)
|.+.+. |.| .|.|++++..... . .....++ ...|.|.....+ .|.|+|.|.|..+......
T Consensus 157 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~ 235 (512)
T 1zvo_C 157 CLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKA 235 (512)
T ss_pred EEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCc
Confidence 999985 765 8999997643210 0 1111111 245888888777 9999999999988765443
Q ss_pred --EEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcc
Q psy2776 228 --TLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305 (803)
Q Consensus 228 --~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (803)
.+.+..+|..... ...+.+.... . ..+.+. .. ..+|...-..-.+.......+.....+
T Consensus 236 ~~~v~l~~pp~~~~~--~~~~~~~~~~-----~---~~g~~~---~~-----~~~~~~~~~~h~~~~~~~~~~~~~~~~- 296 (512)
T 1zvo_C 236 QASSVPTAQPQAEGS--LAKATTAPAT-----T---RNTGRG---GE-----EKKKEKEKEEQEERETKTPECPSHTQP- 296 (512)
T ss_pred CCEEEEeCCCchhcc--ccccccCchh-----h---ccCccc---cc-----ceeccCCcccccccCcccccCCCCCCC-
Confidence 1222211100000 0000000000 0 000000 00 000000000000000000000000011
Q ss_pred ccccccCCceeeeccccceeEEEEe-cC-C-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-SS-P-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
+.+....|....+..|+.+.|.|.+ +. | ...+.|+|+|..+....... ....+..|.|..
T Consensus 297 p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~-------------~~~~~~~gt~~~---- 359 (512)
T 1zvo_C 297 LGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEG-------------LLERHSNGSQSQ---- 359 (512)
T ss_pred CEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceecc-------------ceecCCCCeEEE----
Confidence 1221222333335579999999999 53 4 45999999998865211100 000111222221
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
...|.|.....+|.|.|+|.|.|..+... ..
T Consensus 360 ---------------------------------------~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~--------- 390 (512)
T 1zvo_C 360 ---------------------------------------HSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RL--------- 390 (512)
T ss_pred ---------------------------------------EEEEEEchHHhcCCCeEEEEEEeCCCCCC-ce---------
Confidence 23488988999999999999999876543 11
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeee--cc--CCCCCCccceeeeccccceEEeecceeE-EEEEEcCcCC
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL--QI--QSPPQQPAIKLVDSNLKSQRLSVKSQWK-VEVKYFGFPR 537 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v--~~~p~~~~~~~~~~~~~~~~v~~g~~v~-l~C~~~g~p~ 537 (803)
.+.. .+ ..+|. +.+... .. .|+.+. |.|.+.|+++
T Consensus 391 -------------------------------~~~~~~~~~~~~~p~---v~~~~~--~~----~~~~~~~L~C~~~g~~P 430 (512)
T 1zvo_C 391 -------------------------------MALREPAAQAPVKLS---LNLLAS--SD----PPEAASWLLCEVSGFSP 430 (512)
T ss_pred -------------------------------eEEeecCCCCCCCCE---EEEEcc--Cc----CCCCceEEEEEEeeeCC
Confidence 1100 01 12222 111111 11 688999 9999999655
Q ss_pred C--eeEEeeCCeeecCCCcE--EEEecCCe------EEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEEEe
Q psy2776 538 P--EISWMKNGAEITDSKAC--RIFIDEET------STIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQVL 599 (803)
Q Consensus 538 ~--~v~W~~~g~~i~~~~~~--~~~~~~~~------~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~V~ 599 (803)
+ .+.|+|+|..+...... ......++ +.|.|.....+|.|.|+|.|.|..... .....|.|.
T Consensus 431 ~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 431 PNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred CCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence 3 68899999998764211 11222222 456777777777999999999986653 344444443
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=201.40 Aligned_cols=174 Identities=26% Similarity=0.348 Sum_probs=144.2
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+... .++.+. .++..|.|.+++.+|+|.|+|.+.|..|. ....
T Consensus 15 ~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 92 (192)
T 2iep_A 15 ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR--ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC 92 (192)
T ss_dssp CEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE--GGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEE
T ss_pred cceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc--CCccEEEEcCCCcccCeEEEEEEEcCCCceeEeE
Confidence 3577899999999999999999999999999988753 444443 23458999999999999999999999887 4566
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|..+ |
T Consensus 93 ~~l~v~~~-----------------------------------------------------------------------p 101 (192)
T 2iep_A 93 GALQVKMK-----------------------------------------------------------------------P 101 (192)
T ss_dssp EEEEEEEE-----------------------------------------------------------------------E
T ss_pred EEEEEEeC-----------------------------------------------------------------------C
Confidence 77777653 4
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+..++ .|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 102 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~-~~~d~G~Y~C~a~n~~g 177 (192)
T 2iep_A 102 KITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNV-QKEDAGQYRCVAKNSLG 177 (192)
T ss_dssp EEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTS---CEEESSC-CGGGCEEEEEEEEETTE
T ss_pred ccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCC---cEEEecC-ChhhCEEEEEEEEcCCC
Confidence 4555555677889999999999999999999999999999887776554433 5999999 78999999999999999
Q ss_pred ce-eeeEEEEEEee
Q psy2776 754 SA-THGARVTVDVE 766 (803)
Q Consensus 754 ~~-~~~~~l~V~~~ 766 (803)
.. +..+.|.|.++
T Consensus 178 ~~~s~~~~l~V~~p 191 (192)
T 2iep_A 178 TAYSKLVKLEVEVF 191 (192)
T ss_dssp EEECCCEEEEEEC-
T ss_pred cEEEEEEEEEEEeC
Confidence 98 56788888653
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=198.80 Aligned_cols=169 Identities=20% Similarity=0.341 Sum_probs=141.0
Q ss_pred cceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCCC--cEEEEecCC-------eEEEEEeeeccCcCeEEEEEEEc
Q psy2776 516 KSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDSK--ACRIFIDEE-------TSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~-------~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
....+.+|+.+.|.|.+. |.|.+.+.|+|+|..+.... ++++....+ .+.|.|.++..+|+|.|+|.|.|
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 89 (195)
T 2c5d_C 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFL 89 (195)
T ss_dssp CCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEE
T ss_pred hheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEe
Confidence 467889999999999999 99999999999999998763 444444333 57999999999999999999999
Q ss_pred CCCCeEE-EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecc
Q psy2776 586 AAGSTSL-DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664 (803)
Q Consensus 586 ~~g~~s~-s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~ 664 (803)
..|.... .+.|.|..
T Consensus 90 ~~~~~~~~~~~l~V~~---------------------------------------------------------------- 105 (195)
T 2c5d_C 90 GHQTFVSQPGYVGLEG---------------------------------------------------------------- 105 (195)
T ss_dssp TTEEEECCCEEEEECC----------------------------------------------------------------
T ss_pred CCCceecccEEEEEec----------------------------------------------------------------
Confidence 8765433 36666644
Q ss_pred cCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCcee
Q psy2776 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 665 ~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+...... .....|.|.++ + |+|.
T Consensus 106 -------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~-~--d~G~ 170 (195)
T 2c5d_C 106 -------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGL-N--KTSS 170 (195)
T ss_dssp -------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCC-S--SCEE
T ss_pred -------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEccc-c--cCce
Confidence 5667777777889999999999999999999 99999999998766543 45568999988 4 8999
Q ss_pred EEEEEEccCccee-eeEEEEE
Q psy2776 744 YKVVATNELGSAT-HGARVTV 763 (803)
Q Consensus 744 Y~C~a~N~~G~~~-~~~~l~V 763 (803)
|+|.|.|.+|... +.+.|.|
T Consensus 171 Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 171 FSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEEEEEETTEEEECCCEEEEE
T ss_pred EEEEEEcCCCceEEEEEEEEE
Confidence 9999999999995 7888888
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=222.01 Aligned_cols=287 Identities=15% Similarity=0.199 Sum_probs=162.8
Q ss_pred CcCeeeecCCcEEEEEEECcc--CCCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV--PTPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+....+.+|+.+.|.|.+.+. +.+.+.|+|+. ..+. ..++... .+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL 86 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence 345678899999999999876 36789999973 2210 1223322 24578999999
Q ss_pred CCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 205 SESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
+.+|+|.|+|.+.|..+.......|.|...+.. .
T Consensus 87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~--~-------------------------------------------- 120 (344)
T 1za6_B 87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTK--G-------------------------------------------- 120 (344)
T ss_dssp CGGGCEEEEEEETTTTCEECCCEEEEECSSCCB--C--------------------------------------------
T ss_pred CcccCEEEEEEEecCcceecCcEEEEEecCCCC--C--------------------------------------------
Confidence 999999999999996544444567777642100 0
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-eeeEEeecCeeccccceeEEEEcCcee
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-IQVKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~~i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
+.+....+. ..+.+|+.++|.|.+ +. |. +.+.|+|+|..+.........
T Consensus 121 ---------------------P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~------ 172 (344)
T 1za6_B 121 ---------------------PSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL------ 172 (344)
T ss_dssp ---------------------CEEEEECCS-CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEE------
T ss_pred ---------------------CeEEEcccc-ccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeE------
Confidence 000000111 123569999999999 54 65 799999998765321000000
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
...|.|.. ...|+|.++..+| |.|+|.
T Consensus 173 ---------~~~~~~~~-------------------------------------------~s~L~i~~~~~~d-G~Y~C~ 199 (344)
T 1za6_B 173 ---------QSSGLYSL-------------------------------------------SSVVTVPSSSLGT-QTYICN 199 (344)
T ss_dssp ---------CTTSCEEE-------------------------------------------EEEEEEETTHHHH-BCEEEE
T ss_pred ---------CCCCCEEE-------------------------------------------EEEEEEcHHHcCC-CcEEEE
Confidence 01112211 1248888888878 999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccC--cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceE
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKAD--TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~ 519 (803)
|.|..+....... +.+.... ..+.+ . ..... .........+|. +.+.... ..
T Consensus 200 a~n~~~~~~~~~~---------~~~~v~~~~~~~~~-~-----~~~~~-----l~~~~~~~~~P~---v~~~~~~--~~- 253 (344)
T 1za6_B 200 VNHKPSNTKVDKK---------VEPKSCDKTHTCPP-C-----GGGSS-----GGGSGGQPREPQ---VYTLPPS--RD- 253 (344)
T ss_dssp EEEGGGTEEEEEE---------ECCCCC-------------------------------CCBCCE---EEEECCC--GG-
T ss_pred EEeCCCCccceEe---------ecccccccccccCC-C-----CCCcc-----ccccCCCCcCCE---EEEeCCC--hH-
Confidence 9998775433210 1000000 00000 0 00000 000001122222 1111111 11
Q ss_pred EeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
...|..+.|.|.+.|.++ +.+.|+|+|..+.......+....+ .+.|.|.....+|.|.|+|.|.|.....
T Consensus 254 ~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~ 331 (344)
T 1za6_B 254 ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 331 (344)
T ss_dssp GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence 124667999999999643 5899999998886542222222222 2456666666678999999999986543
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=193.63 Aligned_cols=167 Identities=23% Similarity=0.378 Sum_probs=139.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCC--eEEEEEeeeccCcCeEEEEEEEcCCCC-eEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGS-TSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s 593 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|++..+....+..+..... ...|.|.++..+|+|.|+|.|.|..|. .+..
T Consensus 11 ~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 90 (182)
T 1rhf_A 11 KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90 (182)
T ss_dssp EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred ceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEE
Confidence 5778999999999999999999999999999998776555544333 478999999999999999999998775 4466
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|.. +|
T Consensus 91 ~~l~V~~-----------------------------------------------------------------------~p 99 (182)
T 1rhf_A 91 VWLTVEG-----------------------------------------------------------------------VP 99 (182)
T ss_dssp EEEEEEC-----------------------------------------------------------------------SC
T ss_pred EEEEEec-----------------------------------------------------------------------CC
Confidence 7777755 56
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+..... ....|.|.++ +|+|.|+|.|.|.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~---~d~G~Y~C~a~N~~ 169 (182)
T 1rhf_A 100 FFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV---TQSTMFSCEAHNLK 169 (182)
T ss_dssp EEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC---SSCEEEEEEEEETT
T ss_pred eEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc---ccCeEEEEEEECCC
Confidence 67777777889999999999999999999 9999999998854421 4568999987 58999999999999
Q ss_pred ccee-eeEEEEEE
Q psy2776 753 GSAT-HGARVTVD 764 (803)
Q Consensus 753 G~~~-~~~~l~V~ 764 (803)
|... .++.|.|+
T Consensus 170 g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 170 GLASSRTATVHLQ 182 (182)
T ss_dssp EEEECCCEEEEEC
T ss_pred CCcccceEEEEeC
Confidence 9984 58888773
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=195.13 Aligned_cols=173 Identities=17% Similarity=0.302 Sum_probs=141.1
Q ss_pred ceEEeecceeEEEEEEcCcC-CCeeEEee-CCeeecC-CCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCC-CCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-RPEISWMK-NGAEITD-SKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAA-GSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-~~~v~W~~-~g~~i~~-~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g~~s 591 (803)
...+.+|+.+.|.|.+.+.| .+.+.|++ +|..+.. ..++.+.. ......|.|.++..+|+|.|+|.|.|.. +..+
T Consensus 11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 90 (191)
T 1epf_A 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90 (191)
T ss_dssp SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceE
Confidence 57789999999999999987 78999999 8888874 35555443 3567899999999999999999999997 4556
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|..
T Consensus 91 ~~~~l~v~~----------------------------------------------------------------------- 99 (191)
T 1epf_A 91 ATVNVKIFQ----------------------------------------------------------------------- 99 (191)
T ss_dssp EEEEEEEEC-----------------------------------------------------------------------
T ss_pred EEEEEEeec-----------------------------------------------------------------------
Confidence 666666644
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC--CCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++....++ .|.|.++ +.+|+|.|+|.|.
T Consensus 100 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~-~~~d~G~Y~C~a~ 175 (191)
T 1epf_A 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGI-KKTDEGTYRCEGR 175 (191)
T ss_dssp CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS---CEEETTC-CGGGCEEEEEEEE
T ss_pred CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCC---eEEECCC-ChhhCEEEEEEEE
Confidence 566766777788899999999999999999999999999998643 344433322 5999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|.+|.......+.|.
T Consensus 176 n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 176 ILARGEINFKDIQVI 190 (191)
T ss_dssp EGGGTEEEEEEEEEE
T ss_pred EecceeEEEEEEEEe
Confidence 999888777777764
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=195.73 Aligned_cols=173 Identities=21% Similarity=0.291 Sum_probs=133.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE--
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS-- 591 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s-- 591 (803)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+. ....|.|.++..+|+|.|+|.|.|..+...
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 86 (189)
T 2v5t_A 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDF 86 (189)
T ss_dssp SSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC---TTSCEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred CCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe---cCCCEEEeeCCHhHCcEEEEEEEEcCCCceEE
Confidence 3577899999999999999999999999999887643 333322 234699999999999999999999876543
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|..+|
T Consensus 87 ~~~~l~v~~~p--------------------------------------------------------------------- 97 (189)
T 2v5t_A 87 RDIIVIVNVPP--------------------------------------------------------------------- 97 (189)
T ss_dssp EEEEEEEEEEE---------------------------------------------------------------------
T ss_pred EEEEEEecCCC---------------------------------------------------------------------
Confidence 44455554433
Q ss_pred CCeeEeccc--eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFE--EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~--~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+..... ...+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+..++ ..|.|.++ +.+|+|.|+|.|.
T Consensus 98 --~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~-~~~d~G~Y~C~a~ 172 (189)
T 2v5t_A 98 --AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNI-INSDGGPYVCRAT 172 (189)
T ss_dssp --EEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTT--TEEEECSC-CGGGCEEEEEEEE
T ss_pred --CcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCC--CEEEEcCC-ChhhCeeEEEEEE
Confidence 2222222 346778999999999999999999999999999888776654433 47999999 7899999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|.+|....++.|.|.|
T Consensus 173 n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 173 NKAGEDEKQAFLQVFV 188 (189)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCceeEEEEEEEEe
Confidence 9999999999998864
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=215.19 Aligned_cols=274 Identities=18% Similarity=0.238 Sum_probs=162.7
Q ss_pred CCCeeeccCcCeeeecC--CcEEEEEEECcc-C-CCeeEEEEcCeecccee----EEEecC----eeEEEEecCCCCcce
Q psy2776 143 EAPVIQEPLKDSVAGFQ--SSVTLECVVSGV-P-TPDIKWYKDDSLIKGRN----ITYENN----VARFTVVNCSESSEG 210 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G--~~~~L~C~~~g~-p-~p~i~W~~~~~~~~~~~----~~~~~~----~~~L~i~~v~~~d~G 210 (803)
.+|.+...+.......| +.+.|.|.+.|. | .+.|.|+|++..+.... ....++ ...|.|.+...+|+|
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g 85 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 85 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence 34544443322222334 699999999985 4 46899999999876431 111122 236888888888999
Q ss_pred EEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 211 RYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 211 ~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
.|+|.|.|..+....++.+.+...
T Consensus 86 ~Y~C~a~n~~~~~~~~~~~~~~~~-------------------------------------------------------- 109 (323)
T 2wqr_A 86 TYTCQVTYQGHTFEDSTKKCADSN-------------------------------------------------------- 109 (323)
T ss_dssp CEEEEEEETTEEEEEEECCCCCSS--------------------------------------------------------
T ss_pred cEEEEEEeCCCCcceeeecCCCCC--------------------------------------------------------
Confidence 999999998764433322100000
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce---eeEEeecC-eeccccceeEEEEcCceeEEE
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI---QVKWLKKG-KEIKESARHIITSRGTQRKLV 364 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~---~i~W~~~g-~~l~~~~~~~~~~~~~~~~l~ 364 (803)
...+.+....|....+.+|+.+.|.|.+ + .|.+ .+.|+|++ ..+.........
T Consensus 110 ------------~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~--------- 168 (323)
T 2wqr_A 110 ------------PRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEK--------- 168 (323)
T ss_dssp ------------GGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEE---------
T ss_pred ------------CCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCcc---------
Confidence 0001111112233345679999999998 5 4555 99999974 544321111000
Q ss_pred EeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeC
Q psy2776 365 IKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444 (803)
Q Consensus 365 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~ 444 (803)
...|.|. ....|+|.++..+|+|.|+|.|.|
T Consensus 169 ------~~~g~~~-------------------------------------------~~~~L~I~~~~~~D~G~Y~C~a~n 199 (323)
T 2wqr_A 169 ------QRNGTLT-------------------------------------------VTSTLPVGTRDWIEGETYQCRVTH 199 (323)
T ss_dssp ------CTTSCEE-------------------------------------------EEEEEECCHHHHHTTCCEEEEEEC
T ss_pred ------CCCCCEE-------------------------------------------EEEEEEECHHHccCCCCEEEEEEC
Confidence 0001111 123589999999999999999999
Q ss_pred CceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec--cCCCCCCccceeeeccccceEEee
Q psy2776 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ--IQSPPQQPAIKLVDSNLKSQRLSV 522 (803)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~~~p~~~~~~~~~~~~~~~~v~~ 522 (803)
..+..... +. +.+. +..+|. +.+..... . ...
T Consensus 200 ~~~~~~~~-----------~~-----------------------------v~~~~~~~~~P~---v~~~~~~~--~-~~~ 233 (323)
T 2wqr_A 200 PHLPRALM-----------RS-----------------------------TTKTSGPRAAPE---VYAFATPE--W-PGS 233 (323)
T ss_dssp TTSSSCEE-----------EE-----------------------------ECCCCSCCBCCE---EEEEECCC--C-TTC
T ss_pred CCCCCCee-----------eE-----------------------------EEccCCCCCCCE---EEEeCCCh--H-Hhc
Confidence 76322211 00 0000 112222 22211111 1 122
Q ss_pred cceeEEEEEEcCcCC-C-eeEEeeCCeeecCCCcEEE----EecC----CeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGFPR-P-EISWMKNGAEITDSKACRI----FIDE----ETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~p~-~-~v~W~~~g~~i~~~~~~~~----~~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.+.|.|.+.|.++ + .+.|+|+|..|..+. ... ...+ ..+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 234 g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 999999999998544 3 799999999886532 111 1111 1357999999999999999999999776
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=205.59 Aligned_cols=190 Identities=23% Similarity=0.328 Sum_probs=143.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+. ..........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 24 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 103 (241)
T 3grw_A 24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 103 (241)
T ss_dssp EEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEE
Confidence 467889999999999999999999999999988765332 1122334568999999999999999999999998888888
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe-
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL- 674 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~- 674 (803)
|.|...+ ..+|.
T Consensus 104 l~V~~~~-------------------------------------------------------------------~~~~~~ 116 (241)
T 3grw_A 104 LDVLERS-------------------------------------------------------------------PHRPIL 116 (241)
T ss_dssp EEEECCC-------------------------------------------------------------------CCCCEE
T ss_pred EEEeccC-------------------------------------------------------------------CCCcee
Confidence 8886532 11233
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEee----CCeeccCCCCeEEEe--------eCceEEEEEecCCCCCCce
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR----NNKPLLSSPKKREIF--------DGENIILELKEADSETDAG 742 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~~--------~~~~~~L~i~~v~~~~D~G 742 (803)
+...+....+.+|+.+.|.|.+.|.|.+.+.|++ +|..+..+....... ......|.|.++ +.+|+|
T Consensus 117 ~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G 195 (241)
T 3grw_A 117 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SERDGG 195 (241)
T ss_dssp EECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSC-CGGGCE
T ss_pred ecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcC-CcccCc
Confidence 3334556778899999999999999999999999 888887654432221 123567999999 789999
Q ss_pred eEEEEEEccCcceeeeEEEEEEeeccCCCCCc
Q psy2776 743 DYKVVATNELGSATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~ 774 (803)
.|+|.|.|..|..+.++.|.|..++..|+...
T Consensus 196 ~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~v 227 (241)
T 3grw_A 196 EYLCRATNFIGVAEKAFWLSVHGPRAAEEELV 227 (241)
T ss_dssp EEEEEEECSSCEEEEEEEEEC-----------
T ss_pred EEEEEEecCcceEEEEEEEEecCCCCCCccce
Confidence 99999999999999999999977665555443
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=190.77 Aligned_cols=183 Identities=27% Similarity=0.450 Sum_probs=141.3
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+......
T Consensus 11 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-------------------------------------- 52 (194)
T 2a38_A 11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-------------------------------------- 52 (194)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST--------------------------------------
T ss_pred cCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC--------------------------------------
Confidence 3445567779999999999 8889999999999887654210
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
+..+...++...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 53 ----------------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~------------------ 92 (194)
T 2a38_A 53 ----------------------GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST------------------ 92 (194)
T ss_dssp ----------------------TCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE------------------
T ss_pred ----------------------ceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEE------------------
Confidence 0112233455679999999999999999999988776652
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
..|.|...+..|.+. .......+.+|+.+.|.|.+.|.|.+.+.|+++|..+.
T Consensus 93 ------------------------~~l~v~~~~~~p~~~---~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~ 145 (194)
T 2a38_A 93 ------------------------AELLVKAETAPPNFV---QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145 (194)
T ss_dssp ------------------------EEEEEECCCEEEEEE---ECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECC
T ss_pred ------------------------EEEEEccCCCCCEEE---eCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECC
Confidence 233333221111111 11235678899999999999999999999999999998
Q ss_pred CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 551 DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
.+.++.+...+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 146 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp CSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 8888888777777899999999999999999999999999999988873
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=193.08 Aligned_cols=183 Identities=21% Similarity=0.353 Sum_probs=140.1
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc-eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA-RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.... ++.+..
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---------------------------------- 56 (197)
T 2j8h_A 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQE---------------------------------- 56 (197)
T ss_dssp CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEE----------------------------------
T ss_pred CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEE----------------------------------
Confidence 445667789999999999 88999999999998876432 221111
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
..++...|.|.+++.+|+|.|+|.+.|..|....
T Consensus 57 ---------------------------~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~------------------- 90 (197)
T 2j8h_A 57 ---------------------------FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG------------------- 90 (197)
T ss_dssp ---------------------------ETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEE-------------------
T ss_pred ---------------------------cCCCEEEEEECcCCHHhCEEEEEEEEECCCceeE-------------------
Confidence 1233456899999999999999999998877654
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|....... ........+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 91 -----------------------~~~l~V~~~p~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~ 146 (197)
T 2j8h_A 91 -----------------------TASLEVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146 (197)
T ss_dssp -----------------------EEEEEEEEEEEECCSSC-BTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEEC
T ss_pred -----------------------EEEEEEcCCCcCCCCcc-ccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEee
Confidence 22333333222111100 011124667889999999999999999999999999998
Q ss_pred CCCcEEEEecCCeEEEEEee-eccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 551 DSKACRIFIDEETSTIAIYS-VVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~-v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
...++.+........|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 147 ~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 88888887777789999999 99999999999999999999999999885
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=185.41 Aligned_cols=166 Identities=15% Similarity=0.225 Sum_probs=134.9
Q ss_pred ceEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
...+.+|+.+.|.|.+.+.|.| .+.|+|+|..+...... .....|.|. ..+|+|.|+|.|.|. ....+
T Consensus 7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~ 76 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPE---PMGTA 76 (184)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEEST---TSCEE
T ss_pred EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECC---cCcEE
Confidence 4678899999999999988877 89999999988765422 124566666 689999999999983 23556
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|.. +|.
T Consensus 77 ~l~V~~-----------------------------------------------------------------------~P~ 85 (184)
T 3b5h_A 77 NIQLHG-----------------------------------------------------------------------PPR 85 (184)
T ss_dssp EEEECC-----------------------------------------------------------------------SCC
T ss_pred EEEEec-----------------------------------------------------------------------CCc
Confidence 666654 556
Q ss_pred eEeccceeEEecCCeEEEEEEEeecC-CCceEEee---CC-eeccC--CCCeEEEeeCceEEEEEecCCC-CCCceeEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFR---NN-KPLLS--SPKKREIFDGENIILELKEADS-ETDAGDYKV 746 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~---~~-~~l~~--~~~~~~~~~~~~~~L~i~~v~~-~~D~G~Y~C 746 (803)
+...+....+.+|+.+.|.|.+.|.| .+.+.|++ ++ ..+.. +.++.+..++....|.|.++ + .+|+|.|+|
T Consensus 86 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~~d~G~Y~C 164 (184)
T 3b5h_A 86 VKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL-NMEADPGQYRC 164 (184)
T ss_dssp CEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSC-CTTTSSEEEEE
T ss_pred eeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeec-cccccCceEEE
Confidence 66666667889999999999999999 79999999 44 44433 26788887888889999999 8 799999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+|.....+.|.|.
T Consensus 165 ~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 165 NGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp EEEETTEEEEEEEEEEEC
T ss_pred EEEeCCCcceEEEEEEEe
Confidence 999999999999888885
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=189.57 Aligned_cols=182 Identities=25% Similarity=0.376 Sum_probs=142.1
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|++++..+....+..+..++
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------------------------------- 60 (197)
T 3lcy_A 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG-------------------------------- 60 (197)
T ss_dssp CCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESS--------------------------------
T ss_pred cCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCC--------------------------------
Confidence 3445567789999999999 8899999999999888766555444333
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
+...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 61 ------------------------------~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~------------------ 92 (197)
T 3lcy_A 61 ------------------------------RTHTLTVMTEEQEDEGVYTCIATNEVGEVETS------------------ 92 (197)
T ss_dssp ------------------------------SEEEEEEECCSGGGCEEEEEEEECSSCEEEEE------------------
T ss_pred ------------------------------CEEEEEEecCCccCCEEEEEEEECCCCceeEE------------------
Confidence 23458888899999999999999988776652
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
..|.|..+|...... .......+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 93 ------------------------~~l~v~~~p~~~~~~---~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~ 145 (197)
T 3lcy_A 93 ------------------------SKLLLQATPQFHPGY---PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ 145 (197)
T ss_dssp ------------------------EEEEEEEEEEECTTS---CCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECC
T ss_pred ------------------------EEEEEEcCCCCCCCc---cCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECC
Confidence 223333322211100 00124567889999999999999999999999999999
Q ss_pred CCCcEEEEecCCeEEEEEeeecc-CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 551 DSKACRIFIDEETSTIAIYSVVR-ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~v~~-~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+.++.+........|.|.++.. +|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 146 ~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 146 NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp CCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 88888887777778999999995 899999999999999999999999865
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=199.94 Aligned_cols=185 Identities=22% Similarity=0.316 Sum_probs=143.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEE-EecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI-FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~-~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+....++.. ........|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 28 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~ 107 (231)
T 3ojm_B 28 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107 (231)
T ss_dssp CEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEE
Confidence 56789999999999999999999999999998876533211 22234568999999999999999999999998888888
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|...+ ..+|.+
T Consensus 108 l~V~~~~-------------------------------------------------------------------~~~p~~ 120 (231)
T 3ojm_B 108 LDVVERS-------------------------------------------------------------------RHRPIL 120 (231)
T ss_dssp EEEECCC-------------------------------------------------------------------CCCCEE
T ss_pred EEEEcCC-------------------------------------------------------------------CCCCce
Confidence 8886532 012333
Q ss_pred Ee-ccceeEEecCCeEEEEEEEeecCCCceEEee----CCeeccCCCCeEEE--e-----eCceEEEEEecCCCCCCcee
Q psy2776 676 IE-RFEEKTVKEKGTIRLMAKVKASPAPSIVWFR----NNKPLLSSPKKREI--F-----DGENIILELKEADSETDAGD 743 (803)
Q Consensus 676 ~~-~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~--~-----~~~~~~L~i~~v~~~~D~G~ 743 (803)
.. .+....+.+|+.+.|.|.+.|.|.+.+.|++ +|..+..+...... . ......|.|.++ +.+|+|.
T Consensus 121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~ 199 (231)
T 3ojm_B 121 QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV-TEADAGE 199 (231)
T ss_dssp CTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSC-CGGGCEE
T ss_pred eeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecC-CHHHCeE
Confidence 32 2445778899999999999999999999999 88877655432221 1 112346999999 7899999
Q ss_pred EEEEEEccCcceeeeEEEEEEeeccC
Q psy2776 744 YKVVATNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V~~~~~~ 769 (803)
|+|.|.|..|..+.++.|.|..++..
T Consensus 200 Y~C~a~n~~g~~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 200 YICKVSNYIGQANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCC--
T ss_pred EEEEEEeccceEeeEEEEEEecCCCC
Confidence 99999999999999999999654443
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=195.17 Aligned_cols=172 Identities=22% Similarity=0.291 Sum_probs=130.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+. ...|.|.+++.+|+|.|+|.|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~v~~~D~G~Y~C~~~ 85 (212)
T 1f97_A 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----SSGITFSSVTRKDNGEYTCMVS 85 (212)
T ss_dssp EEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----TTEEEESCCCGGGCEEEEEEEE
T ss_pred CeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee----ceeEEEcccCcccCeEEEEEEE
Confidence 5778999999999999999999999999886531 12333322 2689999999999999999999
Q ss_pred cCCC--CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 585 NAAG--STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 585 n~~g--~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|..| ..+..+.|.|..+|
T Consensus 86 ~~~g~~~~~~~~~l~V~~~p------------------------------------------------------------ 105 (212)
T 1f97_A 86 EEGGQNYGEVSIHLTVLVPP------------------------------------------------------------ 105 (212)
T ss_dssp ETTSSSEEEEEEEEEEEBCC------------------------------------------------------------
T ss_pred ccCCCcccEEEEEEEEEcCC------------------------------------------------------------
Confidence 9977 45666777776532
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEE-EeecCCCceEEeeCCe-eccCCCCe-------EEEeeCceEEEEEe
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK-VKASPAPSIVWFRNNK-PLLSSPKK-------REIFDGENIILELK 733 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~~~-~l~~~~~~-------~~~~~~~~~~L~i~ 733 (803)
.+...+....+.+|+.+.|.|. +.|.|.|.+.|++++. ++..+... ..........|.|.
T Consensus 106 -----------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~ 174 (212)
T 1f97_A 106 -----------SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 174 (212)
T ss_dssp -----------CCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEES
T ss_pred -----------CCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEE
Confidence 2333333456889999999999 7999999999999999 88654331 12223344579999
Q ss_pred cCCCCCCceeEEEEEEccCcce--eeeEEEEEE
Q psy2776 734 EADSETDAGDYKVVATNELGSA--THGARVTVD 764 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~ 764 (803)
++ +.+|+|.|+|.|.|.+|.. +..+.|.|.
T Consensus 175 ~~-~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 175 PV-TAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp SC-CGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred ec-ChhhCcEEEEEEccccCCccccceEEEEEE
Confidence 99 7999999999999999999 445555553
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=191.89 Aligned_cols=187 Identities=18% Similarity=0.251 Sum_probs=129.6
Q ss_pred eeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 315 VTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
...+.+|+.+.|.|.+ +.|.+++.|+|||+++..+.+..+..++.
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~--------------------------------- 57 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN--------------------------------- 57 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTT---------------------------------
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCC---------------------------------
Confidence 3456679999999998 47999999999999998776655543321
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
++...|.|.+++.+|+|.|+|.|.|..+..... +.+..
T Consensus 58 ---------------------------~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~-----------~~~~~---- 95 (207)
T 3rbs_A 58 ---------------------------TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST-----------VVLVG---- 95 (207)
T ss_dssp ---------------------------TCEEEEEESCCCGGGCEEEEEEEEETTEEEEEE-----------EEECT----
T ss_pred ---------------------------CCEEEEEECCCChhhCEEEEEEEECCCeEEEEE-----------EEEEc----
Confidence 134458888888999999999998833322221 10000
Q ss_pred cCCchhhhhcccccccccccceeeecc-----CCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCCeeEEeeCC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQI-----QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRPEISWMKNG 546 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v-----~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~~v~W~~~g 546 (803)
..+...+. ...+.+ ..+|.+. ..+ ...+.+|+.+.|.|.+.|. |.|.++|+|+|
T Consensus 96 --~~~~~~~~-----------~~~~~~~~~~~~~~P~~~------~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g 155 (207)
T 3rbs_A 96 --DVFKKLQK-----------EAEFQRQEWIRKQGPHFV------EYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDE 155 (207)
T ss_dssp --HHHHHHHH-----------HHHHHHHHHHHHTSSEEE------EEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETT
T ss_pred --cchhhhcc-----------cccccccccccCCCCceE------ecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECC
Confidence 00000000 000000 1133221 111 3678899999999999999 99999999999
Q ss_pred eeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 547 AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 547 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
..|..+.++ ....+..+|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus 156 ~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 156 REISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp EEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred EECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 999876543 22334568999999999999999999999999999998865
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=190.68 Aligned_cols=180 Identities=18% Similarity=0.257 Sum_probs=138.3
Q ss_pred cceEEeecceeEEEEE-EcCcCC-CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVK-YFGFPR-PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~-~~g~p~-~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|. +.+.|. +.+.|++++..+................|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 95 (201)
T 3s97_C 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF 95 (201)
T ss_dssp CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred ceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchh
Confidence 3578899999999999 889999 99999999987753322222333345689999999999999999999977665432
Q ss_pred ---EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 594 ---LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 594 ---~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
+.+.+... .....
T Consensus 96 ~~~~~~~~~~~----------------------------------------------------------------~~~~~ 111 (201)
T 3s97_C 96 SKFIPLIPIPE----------------------------------------------------------------RTTKP 111 (201)
T ss_dssp CCCEEEEEECC----------------------------------------------------------------SSCCC
T ss_pred hcccceeeccc----------------------------------------------------------------cccCC
Confidence 22222110 00112
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .+...+ ..|.|.++ +.+|+|.|+|.|.|
T Consensus 112 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~~~--~~L~i~~v-~~~d~G~Y~C~a~n 186 (201)
T 3s97_C 112 YPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EISTSG--AVLKIFNI-QLEDEGIYECEAEN 186 (201)
T ss_dssp EEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEETTT--TEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eecCCC--CEEEEccC-ChhhCEEEEEEEEe
Confidence 25666666667889999999999999999999999999999876542 223233 37999999 78999999999999
Q ss_pred cCcceeeeEEEEEE
Q psy2776 751 ELGSATHGARVTVD 764 (803)
Q Consensus 751 ~~G~~~~~~~l~V~ 764 (803)
.+|..+.++.|.|+
T Consensus 187 ~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 187 IRGKDKHQARIYVQ 200 (201)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred cCCceeeeEEEEEe
Confidence 99999999999885
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=191.11 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=140.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~ 594 (803)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+..+ ....|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus 26 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~ 96 (218)
T 3k0w_A 26 ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG---------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96 (218)
T ss_dssp CCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC---------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCE
T ss_pred CCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC---------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEE
Confidence 3678899999999999999999999999999988654 24689999999999999999999998764 5557
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|...+.. ...........+|.
T Consensus 97 ~l~V~~~~~~--------------------------------------------------------~~~~~~~~~~~~p~ 120 (218)
T 3k0w_A 97 QLDVCDIPES--------------------------------------------------------FQRSVDGVSESKLQ 120 (218)
T ss_dssp EEEEECCCGG--------------------------------------------------------GCTTCCSBCCSSCE
T ss_pred EEEEEccCcc--------------------------------------------------------cccccccccCCCce
Confidence 7777553200 00000011223577
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.+ ..|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 121 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v-~~~d~G~Y~C~a~n~~g~ 190 (218)
T 3k0w_A 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYV-DLEHQGTYWCHVYNDRDS 190 (218)
T ss_dssp EEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---------SEEEESSC-CGGGCEEEEEEEECSSCE
T ss_pred EEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---------CEEEEeec-ChhcCEEEEEEEEcCCCC
Confidence 88888888999999999999999999999999999999866532 36999999 789999999999999998
Q ss_pred -eeeeEEEEEEe
Q psy2776 755 -ATHGARVTVDV 765 (803)
Q Consensus 755 -~~~~~~l~V~~ 765 (803)
.+..+.|.|..
T Consensus 191 ~~s~~~~l~V~~ 202 (218)
T 3k0w_A 191 QDSKKVEIIIDE 202 (218)
T ss_dssp EECCCEEEEECC
T ss_pred ceeeeEEEEEeC
Confidence 57788888854
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=194.65 Aligned_cols=175 Identities=22% Similarity=0.334 Sum_probs=134.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeE--EEEEeeeccCcCeEEEEEEEcCCCCe-
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETS--TIAIYSVVRADTSTYTVTATNAAGST- 590 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~--~L~i~~v~~~dsG~Y~C~a~n~~g~~- 590 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.... ..++....+.. .|.|.++..+|+|.|+|.|.|..|..
T Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~ 96 (217)
T 2vr9_A 17 TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96 (217)
T ss_dssp CCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEE
T ss_pred CceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccc
Confidence 35778999999999999999999999999999887642 22333332222 23688999999999999999988765
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
+..+.|.|...
T Consensus 97 ~~~~~l~v~~~--------------------------------------------------------------------- 107 (217)
T 2vr9_A 97 SRHASLQIAVL--------------------------------------------------------------------- 107 (217)
T ss_dssp CCCEEEEECEE---------------------------------------------------------------------
T ss_pred cccceEEEEEe---------------------------------------------------------------------
Confidence 33556665442
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccC--------CCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLS--------SPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~--------~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
+|.+...+....+.+|+.+.|.|.+ .|.|.+.+.|+++|.++.. ..++.... . ..|.|.++ +.+|+
T Consensus 108 -~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~L~i~~~-~~~d~ 182 (217)
T 2vr9_A 108 -RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD-G--GNLLISNV-EPIDE 182 (217)
T ss_dssp -CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEET-T--TEEEESSC-CSTTC
T ss_pred -CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecC-C--CcEEEeeC-CHHHC
Confidence 2333344456778899999999999 8999999999999999873 33333322 2 26999999 79999
Q ss_pred eeEEEEEEccCcceeeeEEEEEE
Q psy2776 742 GDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 742 G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|+|.|.|.+|....+..+.+.
T Consensus 183 G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 183 GNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred eEEEEEEEcccceeccccEEEEE
Confidence 99999999999999877666664
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=189.26 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=123.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.|.+. +.|+|+|..+... ...|.|.+++.+|+|.|+|.|.|. ..+..+.
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~----------~~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~ 83 (204)
T 3sgj_C 16 WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ----------ASSYFIDAATVDDSGEYRCQTQLS--TLSDPVQ 83 (204)
T ss_dssp CSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC----------SSEEEESSCCGGGCEEEEEEETTS--BCCCCEE
T ss_pred CeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC----------ccEEEEecccccCCEEEEEEeCCC--cccccEE
Confidence 36789999999999999998875 9999999988653 268999999999999999999985 3444566
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. +|.+
T Consensus 84 l~V~~-----------------------------------------------------------------------~p~~ 92 (204)
T 3sgj_C 84 LEVHI-----------------------------------------------------------------------GWLL 92 (204)
T ss_dssp EEEEC-----------------------------------------------------------------------SSEE
T ss_pred EEEec-----------------------------------------------------------------------CceE
Confidence 66644 3333
Q ss_pred EeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc-cCc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN-ELG 753 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N-~~G 753 (803)
...+ ...+.+|+.+.|.|.+.+. |.+.+.|+++|..+.. ......|.|.++ +.+|+|.|+|.|.| ..+
T Consensus 93 ~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~--------~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~~~ 162 (204)
T 3sgj_C 93 LQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY--------FHHNSDFYIPKA-TLKDSGSYFCRGLVGSKN 162 (204)
T ss_dssp EECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------EEECCCEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred ecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec--------ccCCceEEECcC-CcccCEEEEEEEEeCCCc
Confidence 3333 3678899999999999766 6688999999998632 122347999999 78999999999999 566
Q ss_pred ceeeeEEEEEEeec
Q psy2776 754 SATHGARVTVDVEK 767 (803)
Q Consensus 754 ~~~~~~~l~V~~~~ 767 (803)
..+..+.|.|..++
T Consensus 163 ~~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 163 VSSETVQITITQGL 176 (204)
T ss_dssp EECCCEEEEEEC--
T ss_pred eecCcEEEEEeCcC
Confidence 67888888886543
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=191.57 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=124.6
Q ss_pred cceEEeec--ceeEEEEEEcCcCCCeeEEeeC---CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 516 KSQRLSVK--SQWKVEVKYFGFPRPEISWMKN---GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 516 ~~~~v~~g--~~v~l~C~~~g~p~~~v~W~~~---g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
....+.+| +.+.|.|.+.+ |.+.+.|+++ |..+..+.++... ....|.|.+++.+|+|.|+|.|.|..+..
T Consensus 15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~---~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~ 90 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPSYMISYAGMVFCEAKINDESY 90 (213)
T ss_dssp EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE---TTTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc---CCccEEEccCChhcCceEEEEEEECCeeE
Confidence 35778899 99999999986 7899999884 6666655444332 23469999999999999999999854432
Q ss_pred EE-EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCC
Q psy2776 591 SL-DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSP 669 (803)
Q Consensus 591 s~-s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~ 669 (803)
.. .+.|.|...+
T Consensus 91 ~s~~~~l~v~~~~------------------------------------------------------------------- 103 (213)
T 2x1w_L 91 QSIMYIVVVVGYR------------------------------------------------------------------- 103 (213)
T ss_dssp ECCCEEEEECBCC-------------------------------------------------------------------
T ss_pred EEEEEEEEEeCCc-------------------------------------------------------------------
Confidence 22 2555553211
Q ss_pred CCCCeeE-eccceeEEecCCeEEEEEEEeecCC--CceEEeeCCeeccCCCC-eEEEe-------eCceEEEEEecCCCC
Q psy2776 670 GQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNNKPLLSSPK-KREIF-------DGENIILELKEADSE 738 (803)
Q Consensus 670 ~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~~~l~~~~~-~~~~~-------~~~~~~L~i~~v~~~ 738 (803)
+|.+. .......+.+|++++|.|.+.|.|. +.+.|+++|..+..... ..... .....+|.|.++ +.
T Consensus 104 --~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~ 180 (213)
T 2x1w_L 104 --IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TR 180 (213)
T ss_dssp --EEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSC-CG
T ss_pred --ccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCC-Cc
Confidence 23233 3333458999999999999999654 47999999887532211 00100 122457999999 79
Q ss_pred CCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 739 TDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+|+|.|+|.|.|..|..++++.|.|.
T Consensus 181 ~D~G~Y~C~a~N~~g~~~~~~~l~V~ 206 (213)
T 2x1w_L 181 SDQGLYTCAASSGLMTKKNSTFVRVH 206 (213)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ccCEEEEEEEecCCCcEEEEEEEEEe
Confidence 99999999999999999999999985
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=185.10 Aligned_cols=180 Identities=18% Similarity=0.349 Sum_probs=137.6
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeecc--ceeEEE---ecCeeEEEEecCCC-CcceEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GRNITY---ENNVARFTVVNCSE-SSEGRYTCK 215 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~--~~~~~~---~~~~~~L~i~~v~~-~d~G~Y~C~ 215 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+. ..++.. .++...|.|.++.. +|+|.|+|.
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 83 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV 83 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence 467889988999999999999999999999999999999998885 222222 23457899999999 999999999
Q ss_pred EEcCCcC-eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 216 ATNEAGT-AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 216 a~n~~g~-~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
+.|..|. ...++.|.|...+..+...
T Consensus 84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~----------------------------------------------------- 110 (212)
T 2yd1_A 84 AENGVGDAVSADATLTIYEGDKTPAGF----------------------------------------------------- 110 (212)
T ss_dssp EECSSSCEEEEEEEEEEECTTCSCTTC-----------------------------------------------------
T ss_pred EEeCCCCeEEeeEEEEEecccCCCCCC-----------------------------------------------------
Confidence 9999998 6677888887653211100
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~ 373 (803)
+ .+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..........+
T Consensus 111 -----------p-~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~---------------- 162 (212)
T 2yd1_A 111 -----------P-VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD---------------- 162 (212)
T ss_dssp -----------C-EEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET----------------
T ss_pred -----------C-eeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC----------------
Confidence 1 11112333456679999999999 899999999999988865322111111
Q ss_pred ccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 374 TDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 374 g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
+ .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 163 -----------------------------------------------~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s 191 (212)
T 2yd1_A 163 -----------------------------------------------G--FLQIENSREEDQGKYECVAENSMGTEHS 191 (212)
T ss_dssp -----------------------------------------------T--EEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred -----------------------------------------------C--eEEEccCChhhCEEEEEEeecCCCceeE
Confidence 1 4888999999999999999999998876
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=184.40 Aligned_cols=182 Identities=18% Similarity=0.282 Sum_probs=141.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEE---e-cCeeEEEEecC-CCCcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY---E-NNVARFTVVNC-SESSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~-~~~~~L~i~~v-~~~d~G~Y~C~a 216 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+....... . +....|.|.++ ..+|+|.|+|.+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 357888888888999999999999999999999999999999887543222 1 34578999999 599999999999
Q ss_pred EcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 217 TNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.|..|....++.|.|...+..+..
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~~~~-------------------------------------------------------- 107 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQIPRG-------------------------------------------------------- 107 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGCCTT--------------------------------------------------------
T ss_pred EcCCCcEEEEEEEEEeccCccCCC--------------------------------------------------------
Confidence 999998888888888765311110
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeecccc---ceeEEEEcCceeEEEEeecCCCC
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKES---ARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~---~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
...+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+ .++.....+....|.|.++..+|
T Consensus 108 ---------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 178 (212)
T 2yd6_A 108 ---------FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178 (212)
T ss_dssp ---------CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGG
T ss_pred ---------cceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCccc
Confidence 0011112333456679999999999 8999999999999998754 34555555667889999999999
Q ss_pred CccEEEEEecccccee
Q psy2776 373 ETDIGVLALNVKSVSK 388 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~ 388 (803)
.|.|+|.|.|..|...
T Consensus 179 ~G~Y~C~a~N~~G~~~ 194 (212)
T 2yd6_A 179 QGKYECVATNSAGTRY 194 (212)
T ss_dssp CEEEEEEEEETTEEEE
T ss_pred CEEEEEEEECCCCccc
Confidence 9999999999887643
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=197.91 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=120.4
Q ss_pred cceEEeecceeEEEEEEcCcC-----CCeeEEeeCC--eee----------cC--CCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFP-----RPEISWMKNG--AEI----------TD--SKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g--~~i----------~~--~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
....+.+|+.+.|.|.+.+.| .+.+.|+|++ ..+ .. ..++.+........|.|.+++.+|+
T Consensus 46 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 125 (254)
T 2c1o_A 46 LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDL 125 (254)
T ss_dssp SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred ceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccC
Confidence 357889999999999999988 4899999843 222 11 2466665555677999999999999
Q ss_pred eEEEEEEEcCCCCeE-EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 577 STYTVTATNAAGSTS-LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s-~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|+|.|.|..+... ....|.|...
T Consensus 126 G~Y~C~a~n~~~~~~~~~~~l~V~~~------------------------------------------------------ 151 (254)
T 2c1o_A 126 GIYYCVQGSHFPPTFGAGTKLELKRA------------------------------------------------------ 151 (254)
T ss_dssp SEEEEEECSSSSCEEBCCEEEEECCC------------------------------------------------------
T ss_pred EEEEEEEEcCcceEecCCEEEEECCC------------------------------------------------------
Confidence 999999999865421 2234544321
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCC-C-eEEEe--eC---c
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSP-K-KREIF--DG---E 726 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~-~-~~~~~--~~---~ 726 (803)
..+|.+...+....+..|+.++|.|.+.|. |+ +.+.|+|+|.++..+. . ..... ++ .
T Consensus 152 --------------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~ 217 (254)
T 2c1o_A 152 --------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 217 (254)
T ss_dssp --------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEE
T ss_pred --------------CCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEE
Confidence 114555544333333468899999999985 44 3599999999886551 1 11111 11 1
Q ss_pred eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 727 NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 727 ~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
...|.|.++ ..+|+|.|+|.|.|.....
T Consensus 218 ~~~L~i~~~-~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 218 SSTLTLTKD-EYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp EEEEEEEHH-HHHTCCEEEEEEECTTCSS
T ss_pred EEEEEeccc-cccCCCeEEEEEEcCCCCC
Confidence 467999999 6899999999999988765
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=180.96 Aligned_cols=170 Identities=23% Similarity=0.369 Sum_probs=132.9
Q ss_pred ceeeeccccceeEEEEe-cCCc--eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 314 SVTLVPHLGDATFQVEL-SSPD--IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 314 ~~~~~~~g~~~~l~C~~-~~p~--~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.......|+.+.|.|.+ +.|. +.+.|+|+|..+.......
T Consensus 11 ~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~------------------------------------- 53 (190)
T 2wv3_A 11 EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA------------------------------------- 53 (190)
T ss_dssp CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-------------------------------------
T ss_pred eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-------------------------------------
Confidence 33333339999999999 6766 8999999998886532210
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.+.|. +....
T Consensus 54 ------------------------------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~------------------- 83 (190)
T 2wv3_A 54 ------------------------------SNMEYRINKPRAEDSGEYHCVYHFV-SAPKA------------------- 83 (190)
T ss_dssp ------------------------------SEEEEEESSCCGGGCEEEEEEEEET-TEEEE-------------------
T ss_pred ------------------------------ccEEEEEecCCcccCEEEEEEEEeC-Ccccc-------------------
Confidence 2245888999999999999999988 55444
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEee--CCee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAE 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~ 548 (803)
.+.|.|..+|.+.. ......+.+|+.+.|.|.+.|.|.|.+.|++ +|..
T Consensus 84 -----------------------~~~l~V~~~p~~~~------~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~ 134 (190)
T 2wv3_A 84 -----------------------NATIEVKAAPDITG------HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVF 134 (190)
T ss_dssp -----------------------EEEEEEECCCEEEE------ECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEE
T ss_pred -----------------------cEEEEEecCCcccc------cCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCce
Confidence 45556666654321 1234678899999999999999999999999 7877
Q ss_pred ec---CCCcEEEEecCCeEEEEEeeec-cCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 549 IT---DSKACRIFIDEETSTIAIYSVV-RADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 549 i~---~~~~~~~~~~~~~~~L~i~~v~-~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+. ...++.+......+.|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 135 EEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred eeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 65 4466777666677899999999 799999999999999999999998885
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=186.18 Aligned_cols=173 Identities=28% Similarity=0.481 Sum_probs=134.7
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .+.........|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence 3567788778888899999999999999999999999999988763 34455555568999999999999999999999
Q ss_pred CcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 220 AGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 220 ~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
.|.. ...+.|.|...|..
T Consensus 85 ~~~~~~~~~~l~v~~~p~~------------------------------------------------------------- 103 (192)
T 2iep_A 85 VGGAVESCGALQVKMKPKI------------------------------------------------------------- 103 (192)
T ss_dssp SSCCEEEEEEEEEEEEEEE-------------------------------------------------------------
T ss_pred CCceeEeEEEEEEEeCCcc-------------------------------------------------------------
Confidence 8874 45567777665310
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+....+..+..++
T Consensus 104 -----------~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~------------------- 153 (192)
T 2iep_A 104 -----------TRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG------------------- 153 (192)
T ss_dssp -----------EECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTS-------------------
T ss_pred -----------ccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCC-------------------
Confidence 001223345679999999999 8899999999999988765443332221
Q ss_pred EEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 378 VLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 378 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
.|.|.++..+|+|.|+|.|.|..|....
T Consensus 154 ----------------------------------------------~L~i~~~~~~d~G~Y~C~a~n~~g~~~s 181 (192)
T 2iep_A 154 ----------------------------------------------SLRIHNVQKEDAGQYRCVAKNSLGTAYS 181 (192)
T ss_dssp ----------------------------------------------CEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred ----------------------------------------------cEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence 3888888999999999999999887755
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=194.54 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=130.3
Q ss_pred ceEEeecceeEEEEEEcCcC----CCeeEEee----------------CCeeecC-----CCcEEEEe---cCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP----RPEISWMK----------------NGAEITD-----SKACRIFI---DEETSTIAI 568 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p----~~~v~W~~----------------~g~~i~~-----~~~~~~~~---~~~~~~L~i 568 (803)
...+.+|+.+.|.|.+.+.| .+.+.|++ ++..+.. ..+..+.. ..+..+|.|
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i 88 (214)
T 3jz7_A 9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINV 88 (214)
T ss_dssp EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEE
T ss_pred eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEE
Confidence 57789999999999999887 46999998 4444332 22333321 224578999
Q ss_pred eeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 569 ~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
.+++.+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus 89 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p---------------------------------------------- 122 (214)
T 3jz7_A 89 TNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP---------------------------------------------- 122 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----------------------------------------------
T ss_pred ccCChhhCeEEEEEEEeCCCccccEEEEEEEcCC----------------------------------------------
Confidence 9999999999999999999988888888886633
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCC--eeccCCCCeEEEeeC
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNN--KPLLSSPKKREIFDG 725 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~--~~l~~~~~~~~~~~~ 725 (803)
.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++ ..+..... ...
T Consensus 123 -------------------------~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~----~~~ 173 (214)
T 3jz7_A 123 -------------------------SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL----AEM 173 (214)
T ss_dssp -------------------------BSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG----GGT
T ss_pred -------------------------CCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce----ecc
Confidence 22222333447889999999999 89999999999954 33322211 111
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
....|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 174 ~~~~L~i~~~-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 174 TSPVISVKNA-SSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp TSSEEEECSC-CGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred CCCEEEEecC-CHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 2238999999 7999999999999999999998888874
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=190.02 Aligned_cols=176 Identities=26% Similarity=0.341 Sum_probs=134.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc----EEEEecCCeE---EEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA----CRIFIDEETS---TIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~----~~~~~~~~~~---~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..... .......+.. .|.|.++..+|+|.|+|.|.|..|
T Consensus 17 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g 96 (212)
T 2v9r_A 17 SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96 (212)
T ss_dssp CCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTE
T ss_pred CceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCC
Confidence 357789999999999999999999999999998865421 1222222221 344567799999999999999887
Q ss_pred Ce-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCC
Q psy2776 589 ST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667 (803)
Q Consensus 589 ~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~ 667 (803)
.. +..+.|.|...
T Consensus 97 ~~~~~~~~l~V~~~------------------------------------------------------------------ 110 (212)
T 2v9r_A 97 EAVSHDASLEVAIL------------------------------------------------------------------ 110 (212)
T ss_dssp EEECCCEEEEECEE------------------------------------------------------------------
T ss_pred ceeecceEEEEEec------------------------------------------------------------------
Confidence 65 44566666542
Q ss_pred CCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 668 ~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.+...+....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+.......... +. .|.|.++ +.+|+|.|+|
T Consensus 111 ----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-~~--~L~i~~~-~~~d~G~Y~C 182 (212)
T 2v9r_A 111 ----RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-GG--KLMITYT-RKSDAGKYVC 182 (212)
T ss_dssp ----CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE-TT--EEEESSC-CGGGCEEEEE
T ss_pred ----cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc-CC--eEEEeeC-CHhhCeeEEE
Confidence 2233344456678899999999999 899999999999999998665443333 33 6999999 7899999999
Q ss_pred EEEccCcceee-eEEEEEEe
Q psy2776 747 VATNELGSATH-GARVTVDV 765 (803)
Q Consensus 747 ~a~N~~G~~~~-~~~l~V~~ 765 (803)
.|.|.+|.... .+.|.|..
T Consensus 183 ~a~N~~g~~~s~~~~l~V~~ 202 (212)
T 2v9r_A 183 VGTNMVGERESEVAELTVLE 202 (212)
T ss_dssp EEEETTEEEECCCEEEEEEC
T ss_pred EEecccCceecceEEEEEEe
Confidence 99999999754 47888853
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-22 Score=212.64 Aligned_cols=170 Identities=17% Similarity=0.171 Sum_probs=137.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCe-EEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.+.+.|++++..+...... ......+.|.|.++..+|+| .|+|.|.|..|..+.++.
T Consensus 167 ~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~ 244 (347)
T 2ifg_A 167 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ 244 (347)
T ss_dssp SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred ceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEE
Confidence 567889999999999999999999999998765432111 12335689999999999999 999999999999888888
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|..+| .+
T Consensus 245 l~V~~~P-----------------------------------------------------------------------~i 253 (347)
T 2ifg_A 245 VNVSFPA-----------------------------------------------------------------------SV 253 (347)
T ss_dssp CCCBEEE-----------------------------------------------------------------------EE
T ss_pred EEEcCCC-----------------------------------------------------------------------ee
Confidence 8886644 22
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-------CceEEEEEecCCCCCCceeEEEEE
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
....+.+|+.++|.|.+.|.|.|.+.|+++|..+..+........ ....+|.|.++ +.+|+|.|+|.|
T Consensus 254 ----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a 328 (347)
T 2ifg_A 254 ----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLA 328 (347)
T ss_dssp ----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSC-CGGGCEEEEEEE
T ss_pred ----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCC-CcccCceEEEEE
Confidence 112245689999999999999999999999999986655433321 23567999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|.+|.++.++.|.|.
T Consensus 329 ~N~~G~~~~~~~l~V~ 344 (347)
T 2ifg_A 329 ANPFGQASASIMAAFM 344 (347)
T ss_dssp EETTEEEEEEEEECSC
T ss_pred ecCCCceeeEEEEEec
Confidence 9999999999888874
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=186.49 Aligned_cols=173 Identities=10% Similarity=0.100 Sum_probs=128.2
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC--CeEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG--STSLDLSL 596 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g--~~s~s~~l 596 (803)
.+.+|++++|.|.+.+ |.+.+.|+|+|..+.... ...........|.|.+++.+|+|.|+|.|.|..| ..+..+.|
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l 92 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLEL 92 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEE
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEE
Confidence 6789999999999998 778999999998775421 1111124568999999999999999999999987 34556666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|...+ .+|.+.
T Consensus 93 ~V~~~~--------------------------------------------------------------------~~p~~~ 104 (196)
T 3p2t_A 93 VMTGAY--------------------------------------------------------------------SKPTLS 104 (196)
T ss_dssp EEECSS--------------------------------------------------------------------CCCEEE
T ss_pred EecCCC--------------------------------------------------------------------CCCEEE
Confidence 664421 145554
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEeeCceEEEEEecCCCCCCceeEEEEEEccCc--
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELG-- 753 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G-- 753 (803)
..+. ..+.+|+.++|.|.+.+ +++.+.|+|+|..+...... ..........|.|.++ +.+|+|.|+|.|.|..+
T Consensus 105 ~~~~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~~~~ 181 (196)
T 3p2t_A 105 ALPS-PLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPV-TSVHGGTYRCFSSHGFSHY 181 (196)
T ss_dssp EESC-SEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSC-CGGGCEEEEEEEECGGGTT
T ss_pred eCCc-ceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCC-cccCCCeEEEEEEcCCCCc
Confidence 4443 36789999999999988 45689999999876543322 1222334568999999 79999999999999987
Q ss_pred ---ceeeeEEEEEE
Q psy2776 754 ---SATHGARVTVD 764 (803)
Q Consensus 754 ---~~~~~~~l~V~ 764 (803)
..+..+.|.|.
T Consensus 182 ~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 182 LLSHPSDPLELIVS 195 (196)
T ss_dssp EECCCCCCEEEEEC
T ss_pred ccCCCCCCEEEEeC
Confidence 34556666663
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=185.45 Aligned_cols=172 Identities=12% Similarity=0.143 Sum_probs=124.0
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCC-eeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNG-AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g-~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
..+.+|+.+.|.|.+.|.|.|.+.|+++. ..+. . ..........|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l 86 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--G--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--S--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--c--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence 44568999999999999999999999843 2221 1 22233456789999999999999999999998888888888
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|..+| ..+.+.
T Consensus 87 ~V~~~p--------------------------------------------------------------------~~~~~~ 98 (202)
T 1vca_A 87 EIYSFP--------------------------------------------------------------------KDPEIH 98 (202)
T ss_dssp EEEBCC--------------------------------------------------------------------SCCEEE
T ss_pred EEEeCC--------------------------------------------------------------------CCCEeC
Confidence 887643 012222
Q ss_pred eccceeEEecCCeEEEEEEEeecCC---CceEEeeCCeeccCCCCeEE----EeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPLLSSPKKRE----IFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~~~~l~~~~~~~~----~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+ ...+.+|+.++|.|.+.|.|+ +.|.|++++.+|........ .......+|.|..+ ..+|.|.|+|+|.
T Consensus 99 --~-~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~-~~d~~g~ytC~A~ 174 (202)
T 1vca_A 99 --L-SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV-IEDIGKVLVCRAK 174 (202)
T ss_dssp --E-SSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC-GGGTTCEEEEEEE
T ss_pred --C-ceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee-eccCCCeEEEEEE
Confidence 1 156889999999999998644 36899999998753210000 00122456778877 6788999999999
Q ss_pred ccCcce-------eeeEEEEEEe
Q psy2776 750 NELGSA-------THGARVTVDV 765 (803)
Q Consensus 750 N~~G~~-------~~~~~l~V~~ 765 (803)
|.+|.. +.++.|.|..
T Consensus 175 n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 175 LHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp ECSCCCTTSCSEEEEEEECCEEC
T ss_pred ccccCCCCcceeEeeEEEEEEec
Confidence 999873 4566666653
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=188.44 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=120.6
Q ss_pred eccccceeEEEEe----cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeee
Q psy2776 318 VPHLGDATFQVEL----SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLD 393 (803)
Q Consensus 318 ~~~g~~~~l~C~~----~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 393 (803)
+..|++++|.|.+ +.|.+.+.|+|+|..+..........+. +.
T Consensus 5 a~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~----~~----------------------------- 51 (203)
T 4fa8_A 5 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDV----IF----------------------------- 51 (203)
T ss_dssp EETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTE----EE-----------------------------
T ss_pred EEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCce----EE-----------------------------
Confidence 4569999999963 6899999999998655432111110000 00
Q ss_pred cCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 394 FGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
..+.......+....+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 52 ------------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~---------------------- 97 (203)
T 4fa8_A 52 ------------IEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTK---------------------- 97 (203)
T ss_dssp ------------ECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE----------------------
T ss_pred ------------eeccccceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEE----------------------
Confidence 0000001122334566778999999999999999999998888776
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC--
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD-- 551 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~-- 551 (803)
.+.|.|..||.+. .......+.+|+.+.|.|.+.|.|.|.++|++++..+..
T Consensus 98 --------------------~~~l~V~~p~~~~------~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~ 151 (203)
T 4fa8_A 98 --------------------QEHLSVVKPLTLS------VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT 151 (203)
T ss_dssp --------------------EEEEEEEEEEEEE------EEEEECCSSCSCCEEEEEEEEEESCCEEEECCC--------
T ss_pred --------------------EEEEEecCCceee------ecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcc
Confidence 3445555444322 122345677899999999999999999999987654432
Q ss_pred --CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEE
Q psy2776 552 --SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 552 --~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
..++.+..++.-..|.|.++..+|+|.|+|.|+|..|.+..
T Consensus 152 ~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 152 AANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp ----CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred cccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 23334333333456777899999999999999999998764
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=183.97 Aligned_cols=196 Identities=17% Similarity=0.298 Sum_probs=136.6
Q ss_pred eeccccceeEEEEe-c-CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeec
Q psy2776 317 LVPHLGDATFQVEL-S-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDF 394 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~-~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 394 (803)
+.-.++.+.|.|.+ + .|.+.+.|+|+|.++..+.++.+...+
T Consensus 13 l~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~------------------------------------ 56 (212)
T 2r15_A 13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG------------------------------------ 56 (212)
T ss_dssp EEECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEET------------------------------------
T ss_pred EEEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeC------------------------------------
Confidence 33457778889988 4 568999999999998876555443332
Q ss_pred CCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccC
Q psy2776 395 GSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVK 474 (803)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~ 474 (803)
+...|.|.+++.+|+|.|+|.+.|..|...... .+.+......
T Consensus 57 --------------------------~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~---------~l~v~~~~~~-- 99 (212)
T 2r15_A 57 --------------------------EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV---------DLSGQAYDEA-- 99 (212)
T ss_dssp --------------------------TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE---------EECHHHHHHH--
T ss_pred --------------------------CEEEEEECCCCcccCEEEEEEEecCCcceEEEE---------EEEEeeccch--
Confidence 344688888999999999999999877666521 1211100000
Q ss_pred CchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc
Q psy2776 475 PPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554 (803)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~ 554 (803)
. ..++.+. ...+.....| .+.........+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+
T Consensus 100 ~---~~~~~~~--------~~~~~~~~~p-----~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~ 163 (212)
T 2r15_A 100 Y---AEFQRLK--------QAAIAEKNRA-----RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH 163 (212)
T ss_dssp H---HHHHHHH--------HHHHHHHHSC-----EEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSS
T ss_pred h---hhccccC--------cccccccCCC-----cccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCC
Confidence 0 0000000 0000000011 1122222356789999999999999999999999999999998888
Q ss_pred EEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 555 CRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 555 ~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
+.+... +....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 164 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp EEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 777665 55689999999999999999999999999999999988653
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=186.44 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=119.7
Q ss_pred ceEEeecceeEEEEEEcCcCCC---eeEEeeCCee-----------ecCC------CcEEEEe---cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP---EISWMKNGAE-----------ITDS------KACRIFI---DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~---~v~W~~~g~~-----------i~~~------~~~~~~~---~~~~~~L~i~~v~~ 573 (803)
...+.+|+++.|.|.+.+.+.+ .+.|+|++.. +... .+..... ..+...|.|.+++.
T Consensus 13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 92 (226)
T 4f80_A 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA 92 (226)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence 4668899999999999877654 6899987632 1110 1222221 23467999999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.|..|.....+.+.+...
T Consensus 93 ~D~G~Y~C~a~n~~~~~~~~v~~~~~~~---------------------------------------------------- 120 (226)
T 4f80_A 93 SDSGKYLCYFQDGDFYEKALVELKVAAL---------------------------------------------------- 120 (226)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEBC----------------------------------------------------
T ss_pred HHCeeEEEEEECCCcEEEEEEEEeeccc----------------------------------------------------
Confidence 9999999999998877666655554321
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEe--eCceEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIF--DGENIIL 730 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~--~~~~~~L 730 (803)
+........+.+|+.+.|.|.+.| .|.|.|.|++++..+.......+.. ++....+
T Consensus 121 ---------------------~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~ 179 (226)
T 4f80_A 121 ---------------------GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVA 179 (226)
T ss_dssp ---------------------CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEE
T ss_pred ---------------------eecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEE
Confidence 111223456778999999999988 4999999999654443332222222 2334455
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.+..+ +.+|+|.|+|+|+|.+|....++.|.|.
T Consensus 180 s~l~v-~~~d~G~YtC~a~N~~g~~~~~~~v~v~ 212 (226)
T 4f80_A 180 ASVIM-RGSSGEGVSCTIRSSLLGLEKTASISIA 212 (226)
T ss_dssp EEEEE-CC----CEEEEEEETTTTEEEEEEECCC
T ss_pred EEEEe-chhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence 66677 6899999999999999999998888873
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=194.74 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=127.1
Q ss_pred ceEEeecceeEEEEEEcC---cCCCeeEEeeCCeeec------------------------------CCCcEEEEecCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFG---FPRPEISWMKNGAEIT------------------------------DSKACRIFIDEET 563 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g---~p~~~v~W~~~g~~i~------------------------------~~~~~~~~~~~~~ 563 (803)
...+.+|+.+.|.|.+.+ .|.+.+.|+|++.... ...+..+.. .+.
T Consensus 11 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~ 89 (250)
T 2fbo_J 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-LAA 89 (250)
T ss_dssp EEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-TTS
T ss_pred ceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-CCc
Confidence 577899999999999988 7889999999875321 001111111 123
Q ss_pred EEEEEeeeccCcCeEEEEEEEcCCCCe-----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeE
Q psy2776 564 STIAIYSVVRADTSTYTVTATNAAGST-----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638 (803)
Q Consensus 564 ~~L~i~~v~~~dsG~Y~C~a~n~~g~~-----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (803)
..|.|.+++.+|+|.|+|.|.|..+.. +.++.|.|..++
T Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------ 133 (250)
T 2fbo_J 90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT------------------------------------ 133 (250)
T ss_dssp CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS------------------------------------
T ss_pred ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC------------------------------------
Confidence 589999999999999999999987753 567778775531
Q ss_pred EEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC
Q psy2776 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP 717 (803)
Q Consensus 639 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~ 717 (803)
.+|.+ +..+....+.+|+.+.|.|.+.|.|.|.+.|++++.++....
T Consensus 134 --------------------------------~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~ 181 (250)
T 2fbo_J 134 --------------------------------PSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYE 181 (250)
T ss_dssp --------------------------------CCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSS
T ss_pred --------------------------------CCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccc
Confidence 02222 233445778889999999999999999999999998875432
Q ss_pred Ce--EEE-------------------eeCceEEEEEecCCCCCCceeEEEEEEc---cCcceeeeEEEEE
Q psy2776 718 KK--REI-------------------FDGENIILELKEADSETDAGDYKVVATN---ELGSATHGARVTV 763 (803)
Q Consensus 718 ~~--~~~-------------------~~~~~~~L~i~~v~~~~D~G~Y~C~a~N---~~G~~~~~~~l~V 763 (803)
.. ... .......|.|.++ +.+|+|.|+|.|.| ..|.+..++.|.|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 182 TGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAA-KITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp SCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSC-CGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cCcceeEeccCCCCccccCceEecccccCCccEEEEecC-CcccCEEEEEEecCCccccCccceeEEEeC
Confidence 11 000 0001247999999 79999999999999 5556666665543
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=177.85 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=121.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.|.+. +.|+|+|..+.. ....|.|.+++.+|+|.|+|.|.|..+ +..+.
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~ 83 (175)
T 1fnl_A 16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQ 83 (175)
T ss_dssp CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECSSSCC--CCCEE
T ss_pred ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEeeCCcc--cccEE
Confidence 45789999999999999998876 789999987764 356899999999999999999998655 34455
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. +|.+
T Consensus 84 l~V~~-----------------------------------------------------------------------~~~~ 92 (175)
T 1fnl_A 84 LEVHI-----------------------------------------------------------------------GWLL 92 (175)
T ss_dssp EEEEC-----------------------------------------------------------------------SSEE
T ss_pred EEEeC-----------------------------------------------------------------------CCce
Confidence 55543 2223
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
+.. ....+.+|+.+.|.|.+.+.|++ .+.|+++|..+.. ......|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 93 ~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~--------~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~~~ 162 (175)
T 1fnl_A 93 LQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY--------FHHNSDFHIPKA-TLKDSGSYFCRGLVGSKN 162 (175)
T ss_dssp EEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE--------EEECCCEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred eeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC--------CCCCCEEEEccc-ChhhCeEEEEEEEcCCCC
Confidence 222 23568899999999999988665 9999999998732 122346999999 799999999999997654
Q ss_pred -eeeeEEEEEEe
Q psy2776 755 -ATHGARVTVDV 765 (803)
Q Consensus 755 -~~~~~~l~V~~ 765 (803)
.+..+.|.|.+
T Consensus 163 ~~s~~~~l~V~~ 174 (175)
T 1fnl_A 163 VSSETVNITITQ 174 (175)
T ss_dssp EECCCEEEEEEC
T ss_pred ccCccEEEEEeC
Confidence 57777777753
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=181.94 Aligned_cols=170 Identities=16% Similarity=0.273 Sum_probs=130.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-------------------CcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-------------------KACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-------------------~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+.+.|.|...+.|.+.+.|++++...... .+..+. .+..|.|.+++.+|+|
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMG 84 (208)
T ss_dssp SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC---TTSCEEECSCCGGGCE
T ss_pred cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe---cCCeEEEccccccCCe
Confidence 356889999999999888888999999875432211 111111 1247999999999999
Q ss_pred EEEEEEEcCC-CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAA-GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~-g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|+|.+.|.. +.....+.|.|..++
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~------------------------------------------------------ 110 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPV------------------------------------------------------ 110 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCC------------------------------------------------------
T ss_pred EEEEEEEcccCceeEEEEEEEeccCC------------------------------------------------------
Confidence 9999999985 556677777775532
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCC
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 736 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~ 736 (803)
..|.+...... +.+|+.+.|.|.+.+.| |.+.|+++|..+..+.++.+..++ .+|.|.++
T Consensus 111 --------------~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v- 170 (208)
T 3r4d_A 111 --------------TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPI- 170 (208)
T ss_dssp --------------CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSC-
T ss_pred --------------CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEecc-
Confidence 13545444333 88899999999999866 799999999999888887665544 47999999
Q ss_pred CCCCceeEEEEEEccCcce-eeeEEEEE
Q psy2776 737 SETDAGDYKVVATNELGSA-THGARVTV 763 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 763 (803)
+.+|+|.|+|.|.|.+|.. +..+.|.|
T Consensus 171 ~~~d~G~Y~C~a~N~~g~~~s~~~~l~v 198 (208)
T 3r4d_A 171 KREDAGEYQCEISNPVSVRRSNSIKLDI 198 (208)
T ss_dssp CGGGCEEEEEEEECTTCCEECCCEEECC
T ss_pred CHHhCeEEEEEEecCCCcccCCceeeeE
Confidence 7999999999999999997 44555554
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=182.76 Aligned_cols=160 Identities=11% Similarity=0.087 Sum_probs=123.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC--------------CCcEEEEe---cCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD--------------SKACRIFI---DEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~--------------~~~~~~~~---~~~~~~L~i~~v~~~dsG~Y 579 (803)
.+.+.+|+++.|.|.+.+.|.+.+.|+|++..+.. ..++.... ..+...|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 46788999999999999999999999999863211 11222221 22356799999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeee
Q psy2776 580 TVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659 (803)
Q Consensus 580 ~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~ 659 (803)
+|.|.|..| .+.|.|...+
T Consensus 84 ~C~~~~~~~----~~~l~V~~~~--------------------------------------------------------- 102 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFGLT--------------------------------------------------------- 102 (184)
T ss_dssp EEEETTEEE----EEEEEEEEEE---------------------------------------------------------
T ss_pred EEEEEcCCC----cEEEEEEEec---------------------------------------------------------
Confidence 999988744 4455553311
Q ss_pred eeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCC
Q psy2776 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739 (803)
Q Consensus 660 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~ 739 (803)
.+....+.+|++++|.|.+.|.|.|.+.|++++..+ .. ....|.|.++ +.+
T Consensus 103 ------------------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~--~~~~L~i~~v-~~~ 153 (184)
T 2ny1_B 103 ------------------ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQ--GGKTLSVSQL-ELQ 153 (184)
T ss_dssp ------------------ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE--------EE--ESSEEEESSC-CGG
T ss_pred ------------------CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc--------cc--CceEEEEecC-CcC
Confidence 112346789999999999999999999999987654 11 2347999999 799
Q ss_pred CceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 740 DAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
|+|.|+|.|.|..|..+..+.|.|...
T Consensus 154 d~G~Y~C~a~n~~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 154 DSGTWTCTVLQNQKKVEFKIDIVVLAF 180 (184)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCeEEEEEEEECCceEEEEEEEEEEec
Confidence 999999999999999999999998643
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-21 Score=187.12 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=110.5
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~ 595 (803)
..+.+|+++.|.|.+.+.|. .+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 91 (196)
T 2d3v_A 14 SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLE 91 (196)
T ss_dssp SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEE
T ss_pred CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEE
Confidence 36889999999999998766 9999999987653211 01123456899999999999999999999987632 44566
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|...+ .+|.+
T Consensus 92 l~V~~~~--------------------------------------------------------------------~~p~i 103 (196)
T 2d3v_A 92 LVVTGFY--------------------------------------------------------------------NKPTL 103 (196)
T ss_dssp EEEECSS--------------------------------------------------------------------CCCEE
T ss_pred EEecCCC--------------------------------------------------------------------CCCeE
Confidence 6664411 14555
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEe-eCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIF-DGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
...+ ...+.+|++++|.|.+.|.| +.+.|+|+|..+...... .... ......|.|.++ +.+|+|.|+|.|.|..+
T Consensus 104 ~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 104 SALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPV-TPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCC-BTTBCEEEEEEEEETTE
T ss_pred EccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeec-CcccCeeEEEEEEccCC
Confidence 4433 35788999999999999999 899999999877432111 1111 123468999999 79999999999999876
Q ss_pred c
Q psy2776 754 S 754 (803)
Q Consensus 754 ~ 754 (803)
.
T Consensus 181 ~ 181 (196)
T 2d3v_A 181 L 181 (196)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-21 Score=190.03 Aligned_cols=171 Identities=22% Similarity=0.341 Sum_probs=127.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec----------C--CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT----------D--SKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~----------~--~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+. . ..++.+. ...|.|.++..+|+|.|+|.|.
T Consensus 13 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~~~~~d~G~Y~C~~~ 88 (209)
T 1nbq_A 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL----PTGITFKSVTREDTGTYTCMVS 88 (209)
T ss_dssp BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE----TTEEECSCCCTTSCSEEEEEEE
T ss_pred ceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee----ccEEEEeeCCHHHCcEEEEEEe
Confidence 5678899999999999999999999999876531 1 1233322 2689999999999999999999
Q ss_pred cCCCC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 585 NAAGS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 585 n~~g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|..|. .+..+.|.|..+|
T Consensus 89 ~~~g~~~~~~~~~l~V~~~p------------------------------------------------------------ 108 (209)
T 1nbq_A 89 EEGGNSYGEVKVKLIVLVPP------------------------------------------------------------ 108 (209)
T ss_dssp ETTSSCEECCEEECCEEBCC------------------------------------------------------------
T ss_pred cCCCCccceEEEEEEEecCC------------------------------------------------------------
Confidence 98664 3445556554432
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCe-------EEEeeCceEEEEEec
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKK-------REIFDGENIILELKE 734 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~-------~~~~~~~~~~L~i~~ 734 (803)
.+........+.+|+.+.|.|.+ .|.|.|.+.|++++..+..+.+. ..........|.|.+
T Consensus 109 -----------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 177 (209)
T 1nbq_A 109 -----------SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177 (209)
T ss_dssp -----------CCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESS
T ss_pred -----------cCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEe
Confidence 22222334467889999999997 89999999999999988765432 011112345799999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+ +.+|+|.|+|.|.|.+|....+..+.|
T Consensus 178 ~-~~~d~G~Y~C~a~n~~g~~~~s~~v~l 205 (209)
T 1nbq_A 178 L-SASDTGEYSCEARNGYGTPMTSNAVRM 205 (209)
T ss_dssp C-CGGGCCCEEEEEECSSSCCEECCCBCC
T ss_pred c-cccCCeEEEEEEeCCcCcccccccEEE
Confidence 9 789999999999999999944444444
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-21 Score=185.41 Aligned_cols=174 Identities=12% Similarity=0.051 Sum_probs=121.4
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC-C--CeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA-G--STSLDL 594 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g--~~s~s~ 594 (803)
..+.+|++++|.|.+.+.|. .+.|+|+|..+....+.. ........|.|.++..+|+|.|+|.|.|.. | ..+..+
T Consensus 14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~ 91 (198)
T 1ugn_A 14 SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPL 91 (198)
T ss_dssp SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCE
T ss_pred CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccE
Confidence 46789999999999998876 799999998774221100 012235689999999999999999999987 4 345667
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|...+ .+|.
T Consensus 92 ~l~V~~~~--------------------------------------------------------------------~~p~ 103 (198)
T 1ugn_A 92 ELVVTGAY--------------------------------------------------------------------IKPT 103 (198)
T ss_dssp EEEEECSS--------------------------------------------------------------------CCCE
T ss_pred EEEEcccc--------------------------------------------------------------------cCCc
Confidence 77775421 1344
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEe-eCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIF-DGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
+...+ ...+.+|++++|.|.+.|. .+.+.|+|+|..+...... .... .+....|.|.++ +.+|+|.|+|.|.|..
T Consensus 104 i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~ 180 (198)
T 1ugn_A 104 LSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPV-SPSRRWWYRCYAYDSN 180 (198)
T ss_dssp EEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCC-CTTSCEEEEEEEECTT
T ss_pred cccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEeccc-CcccCeEEEEEEEeCC
Confidence 44332 3678899999999999988 7899999999887543221 1111 223578999999 7999999999999987
Q ss_pred cc-----eeeeEEEEEE
Q psy2776 753 GS-----ATHGARVTVD 764 (803)
Q Consensus 753 G~-----~~~~~~l~V~ 764 (803)
+. .+..+.|.|.
T Consensus 181 ~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 181 SPYEWSLPSDLLELLVL 197 (198)
T ss_dssp STTEECCCCCCEEEEEE
T ss_pred CCccccCcCceEEEEec
Confidence 62 2556666664
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=179.25 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=124.2
Q ss_pred ceEEeecceeEEEEEEcCcCC-----CeeEEeeCCeeec---------C------CCcEEEEe---cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-----PEISWMKNGAEIT---------D------SKACRIFI---DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-----~~v~W~~~g~~i~---------~------~~~~~~~~---~~~~~~L~i~~v~~ 573 (803)
...+.+|+.+.|.|.+.+.|. +.+.|+|++..+. . ..+..+.. ..+...|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 89 (222)
T 3sbw_C 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKL 89 (222)
T ss_dssp EEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCG
T ss_pred cEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCccc
Confidence 467889999999999988774 4899999763321 1 12222221 12457899999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.| .|.....+.|.|..++
T Consensus 90 ~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~--------------------------------------------------- 117 (222)
T 3sbw_C 90 QDAGVYRCMISY-GGADYKRITVKVNAPY--------------------------------------------------- 117 (222)
T ss_dssp GGCEEEEEEEES-SSEEEEEEEEEEEBCC---------------------------------------------------
T ss_pred ccCeEEEEEEEe-CCCceeEEEEEEECCC---------------------------------------------------
Confidence 999999999999 6777778888886532
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC-CeeccCCCCeEEEe--eCceEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIF--DGENIIL 730 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~--~~~~~~L 730 (803)
..|.. .....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+..... ++.....
T Consensus 118 -----------------~~~~~---~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~ 177 (222)
T 3sbw_C 118 -----------------NKINQ---RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVT 177 (222)
T ss_dssp -----------------CCCEE---EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEE
T ss_pred -----------------CCCCc---eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEE
Confidence 01111 1113567899999999999999999999998 66654433221211 2222233
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+..+ ..+|+|.|+|.|.|.+|.....+.|.|..
T Consensus 178 ~~l~v-~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 178 STLRI-NTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp EEEEE-ECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEE-eccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 33344 46899999999999999999999999863
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=184.58 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=124.2
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeE--EEEEeeeccCcCeEEEEEEEcCCCCe--EEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS--TIAIYSVVRADTSTYTVTATNAAGST--SLD 593 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~--~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s 593 (803)
..+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ......... .|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~ 95 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT 95 (218)
T ss_dssp SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCC
T ss_pred CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCC
Confidence 46889999999999987 6789999999876643221 111112234 89999999999999999999987633 334
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|... ..+|
T Consensus 96 ~~l~V~~~--------------------------------------------------------------------~~~P 107 (218)
T 1uct_A 96 LELVVTGL--------------------------------------------------------------------YGKP 107 (218)
T ss_dssp EEEEEECS--------------------------------------------------------------------SCCC
T ss_pred EEEEEcCc--------------------------------------------------------------------ccCC
Confidence 55555431 1145
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+...+ ...+.+|++++|.|.+.+.|.+.+.|+|+|..+... . ........|.|.++ +.+|+|.|+|.|.|..+
T Consensus 108 ~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~--~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~ 181 (218)
T 1uct_A 108 FLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPV-DLNVSGIYRCYGWYNRS 181 (218)
T ss_dssp EEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSC-CGGGCEEEEEEEECTTS
T ss_pred EEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--c--cCCCccCEEEEccC-CcccCEEEEEEEEcCCC
Confidence 554444 457889999999997777888999999999877542 1 22345568999999 79999999999998642
Q ss_pred -----ceeeeEEEEEEe
Q psy2776 754 -----SATHGARVTVDV 765 (803)
Q Consensus 754 -----~~~~~~~l~V~~ 765 (803)
..+..+.|.|.+
T Consensus 182 ~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 182 PYLWSFPSNALELVVTD 198 (218)
T ss_dssp TTEECCCCCCEEEEEC-
T ss_pred CCcCCCCCCcEEEEEec
Confidence 335667777754
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=183.03 Aligned_cols=188 Identities=26% Similarity=0.406 Sum_probs=136.3
Q ss_pred CCCeeecc----CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce----eEEEecCeeEEEEecCCCCcceEEEE
Q psy2776 143 EAPVIQEP----LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR----NITYENNVARFTVVNCSESSEGRYTC 214 (803)
Q Consensus 143 ~~p~i~~~----~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C 214 (803)
.+|.|..+ +....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ..........|.|.+++.+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 45555543 34578899999999999999999999999999887632 23445566789999999999999999
Q ss_pred EEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 215 KATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 215 ~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
.+.|..|....++.|.|...+.
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~---------------------------------------------------------- 111 (241)
T 3grw_A 90 VVENKFGSIRQTYTLDVLERSP---------------------------------------------------------- 111 (241)
T ss_dssp EEEETTEEEEEEEEEEEECCCC----------------------------------------------------------
T ss_pred EEeecCCceEEEEEEEEeccCC----------------------------------------------------------
Confidence 9999999888888888866421
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEee----cCeeccccceeEEEEcCceeEEEEeecC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLK----KGKEIKESARHIITSRGTQRKLVIKRVT 369 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~----~g~~l~~~~~~~~~~~~~~~~l~i~~~~ 369 (803)
..+.+....+....+.+|+.+.|.|.+ +.|.+.+.|++ +|..+..+..........
T Consensus 112 ---------~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~---------- 172 (241)
T 3grw_A 112 ---------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKS---------- 172 (241)
T ss_dssp ---------CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEE----------
T ss_pred ---------CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeE----------
Confidence 111122223344556679999999999 89999999999 777775433221110000
Q ss_pred CCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceee
Q psy2776 370 QDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449 (803)
Q Consensus 370 ~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~ 449 (803)
...........|.|.++..+|+|.|+|.|.|..|..
T Consensus 173 --------------------------------------------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~ 208 (241)
T 3grw_A 173 --------------------------------------------WISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208 (241)
T ss_dssp --------------------------------------------EECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred --------------------------------------------eeeeecCCceEEEECcCCcccCcEEEEEEecCcceE
Confidence 000001234569999999999999999999999988
Q ss_pred ee
Q psy2776 450 ET 451 (803)
Q Consensus 450 ~~ 451 (803)
..
T Consensus 209 ~~ 210 (241)
T 3grw_A 209 EK 210 (241)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=182.58 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=128.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCe---eEEeeCCeeecCCC------------------cEEEE---ecCCeEEEEEeeec
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE---ISWMKNGAEITDSK------------------ACRIF---IDEETSTIAIYSVV 572 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~---v~W~~~g~~i~~~~------------------~~~~~---~~~~~~~L~i~~v~ 572 (803)
.+.+.+|+++.|.|.+.+.|.+. +.|+|++..+.... +.... ......+|.|.+++
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 87 (218)
T 4frw_A 8 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV 87 (218)
T ss_dssp EEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCC
T ss_pred eEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeecc
Confidence 57789999999999999988764 88999875443211 11100 01123579999999
Q ss_pred cCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 573 RADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
.+|+|.|.|.+.|..+.........+...+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 117 (218)
T 4frw_A 88 QADEGEYECRVSTFPAGSFQARLRLRVLVP-------------------------------------------------- 117 (218)
T ss_dssp GGGCEEEEEEEEEETTEEEEEEEEEEEEBC--------------------------------------------------
T ss_pred HHHCCceeEEEEeccCceeeeEEEEEEeee--------------------------------------------------
Confidence 999999999999876654433332222211
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEE
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILE 731 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~ 731 (803)
++..........+..|+.+.|.|.+.|.|+|.+.|++++..+........... ...+.|.
T Consensus 118 -------------------~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~ 178 (218)
T 4frw_A 118 -------------------PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFH 178 (218)
T ss_dssp -------------------CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEE
T ss_pred -------------------ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEE
Confidence 22233344456677899999999999999999999999887754432211111 1245799
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
|.++ ..+|+|.|+|+|+|.+|..+..+.|.|.|-
T Consensus 179 i~~~-~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~ 212 (218)
T 4frw_A 179 LVPS-RSMNGQPLTCVVSHPGLLQDQRITHILHVS 212 (218)
T ss_dssp ECCC-GGGTTCEEEEEEECTTCSSCEEEEEECCEE
T ss_pred EeeC-CHHhCeEEEEEEEeCCCCeEEEEEEEEEEC
Confidence 9999 789999999999999999998888888764
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=172.73 Aligned_cols=171 Identities=16% Similarity=0.327 Sum_probs=130.1
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.|....+.+|+.+.|.|.+ +.|.+.+.|+|++..+.......+...+.
T Consensus 8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~------------------------------- 56 (182)
T 1rhf_A 8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ------------------------------- 56 (182)
T ss_dssp CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT-------------------------------
T ss_pred CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCC-------------------------------
Confidence 3455667789999999999 88999999999999887654433322211
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 57 -----------------------------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~------------------ 89 (182)
T 1rhf_A 57 -----------------------------HWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ------------------ 89 (182)
T ss_dssp -----------------------------EEEEEEEESSCCGGGCEEEEEEESSCTTCEECC------------------
T ss_pred -----------------------------CceEEEEEeecCcccCeEEEEEEEcCCCcEEEE------------------
Confidence 113468899999999999999999986544331
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-eeEEeeCCeee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEI 549 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i 549 (803)
.+.|.|..+|.+.. ......+.+|+.+.|.|.+.|.|.| .+.|+++|..+
T Consensus 90 -----------------------~~~l~V~~~p~~~~------~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~ 140 (182)
T 1rhf_A 90 -----------------------PVWLTVEGVPFFTV------EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI 140 (182)
T ss_dssp -----------------------CEEEEEECSCEEEE------CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEEC
T ss_pred -----------------------EEEEEEecCCeEEe------cCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeEC
Confidence 45556666654211 1234678899999999999999999 99999999988
Q ss_pred cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE-EEEEEEE
Q psy2776 550 TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS-LDLSLQV 598 (803)
Q Consensus 550 ~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s-~s~~l~V 598 (803)
..... ....|.|.++ +|+|.|+|.|.|..|... .++.|.|
T Consensus 141 ~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 141 GGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp SCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 65421 4688999998 589999999999999874 4777776
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=176.86 Aligned_cols=156 Identities=16% Similarity=0.194 Sum_probs=119.4
Q ss_pred ceEEeecceeEEEEEEcCcCCC-eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.|.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.|.|..+.. .+.
T Consensus 13 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~--~~~ 80 (176)
T 1f2q_A 13 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQHQQVNESE--PVY 80 (176)
T ss_dssp CSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEECTTSSCCC--CEE
T ss_pred CcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------CceEEEEeccceecCEEEEEEcCCccccc--cEE
Confidence 4578999999999999998885 6999999988764 25689999999999999999999876544 445
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. ++.+
T Consensus 81 l~V~~-----------------------------------------------------------------------~~~~ 89 (176)
T 1f2q_A 81 LEVFS-----------------------------------------------------------------------DWLL 89 (176)
T ss_dssp EEEEC-----------------------------------------------------------------------SSEE
T ss_pred EEEeC-----------------------------------------------------------------------ccee
Confidence 55532 2222
Q ss_pred EeccceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC-c
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL-G 753 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~-G 753 (803)
+.. ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+.... ....|.|.++ +.+|+|.|+|.|.|.. +
T Consensus 90 ~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v-~~~d~G~Y~C~a~n~~~~ 159 (176)
T 1f2q_A 90 LQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNA-TVEDSGTYYCTGKVWQLD 159 (176)
T ss_dssp EEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred ecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------CCCeEEECCC-CcccCEEEEEEEEeCCcc
Confidence 222 235678999999999994 66778999999999884332 2347999999 7899999999999964 4
Q ss_pred ceeeeEEEEEEe
Q psy2776 754 SATHGARVTVDV 765 (803)
Q Consensus 754 ~~~~~~~l~V~~ 765 (803)
..+..+.|.|..
T Consensus 160 ~~s~~~~l~V~~ 171 (176)
T 1f2q_A 160 YESEPLNITVIK 171 (176)
T ss_dssp EECCCEEEEEEC
T ss_pred eEecCEEEEEec
Confidence 456667888753
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=177.40 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=117.7
Q ss_pred ceEEeecceeEEEEEEcC--cCCCeeEEeeCCeeec----------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFG--FPRPEISWMKNGAEIT----------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g--~p~~~v~W~~~g~~i~----------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
.+.+.+|+.+.|.|...+ .|.+.+.|+|++..|. ...++.+. .+ +.|.|.++..+|+|.|+|.|.
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~--~~-gsL~I~~v~~~D~G~Y~C~~~ 81 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL--AN-GDLKIKNLTRDDSGTYNVTVY 81 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC--TT-SCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC--CC-CcEEEcccccccCEEEEEEEE
Confidence 466789999999995333 4567899999997553 23444442 22 349999999999999999999
Q ss_pred cCCCCe--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 585 NAAGST--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 585 n~~g~~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|..|.. +..+.|.|..++
T Consensus 82 n~~g~~~~~~~~~l~V~~~~------------------------------------------------------------ 101 (176)
T 1hng_A 82 STNGTRILNKALDLRILEMV------------------------------------------------------------ 101 (176)
T ss_dssp ETTCCEEEEEEEEEEEECCC------------------------------------------------------------
T ss_pred eCCCCEEEEEEEEEEEeCCC------------------------------------------------------------
Confidence 999986 666777775422
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|.+.. .+..+.|.|.+.|.|.|.+.|+++|.++..+.+ +.|..+ ..+|+|
T Consensus 102 --------~~p~i~~--------~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~-~~~d~G 153 (176)
T 1hng_A 102 --------SKPMIYW--------ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQ-WTNLRA 153 (176)
T ss_dssp --------CCCEEEE--------ETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEE-CSCCSS
T ss_pred --------CCCEEEe--------cCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEE-EccCCe
Confidence 1333321 245699999999999999999999998754433 334466 689999
Q ss_pred eEEEEEEccCcceeeeEEEEE
Q psy2776 743 DYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.|+|.|.|.+|..+..+.|.+
T Consensus 154 ~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 154 PFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp CEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEEecCCCceecccccC
Confidence 999999999999988876654
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-20 Score=182.77 Aligned_cols=187 Identities=21% Similarity=0.369 Sum_probs=136.4
Q ss_pred CCCeeeccC----cCeeeecCCcEEEEEEECccCCCeeEEEEcCeecccee----EEEecCeeEEEEecCCCCcceEEEE
Q psy2776 143 EAPVIQEPL----KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTC 214 (803)
Q Consensus 143 ~~p~i~~~~----~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C 214 (803)
.+|.|...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .........|.|.+++.+|+|.|+|
T Consensus 14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 93 (231)
T 3ojm_B 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93 (231)
T ss_dssp EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence 455665544 67789999999999999999999999999998876421 2445556789999999999999999
Q ss_pred EEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 215 KATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 215 ~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
.+.|..|....++.|.|...+.
T Consensus 94 ~~~n~~~~~~~~~~l~V~~~~~---------------------------------------------------------- 115 (231)
T 3ojm_B 94 VVENEYGSINHTYHLDVVERSR---------------------------------------------------------- 115 (231)
T ss_dssp EEEETTEEEEEEEEEEEECCCC----------------------------------------------------------
T ss_pred EEecccCcccccEEEEEEcCCC----------------------------------------------------------
Confidence 9999999888888888876521
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEee----cCeeccccceeEEEEcCceeEEEEeecC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLK----KGKEIKESARHIITSRGTQRKLVIKRVT 369 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~----~g~~l~~~~~~~~~~~~~~~~l~i~~~~ 369 (803)
..+.+....+....+..|+.+.|.|.+ +.|.+.+.|++ +|..+..+........ ....
T Consensus 116 ---------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~------~~~~-- 178 (231)
T 3ojm_B 116 ---------HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------KHSG-- 178 (231)
T ss_dssp ---------CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEE------EECS--
T ss_pred ---------CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEe------cccc--
Confidence 111222223445556779999999999 89999999999 7766654322111000 0000
Q ss_pred CCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceee
Q psy2776 370 QDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449 (803)
Q Consensus 370 ~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~ 449 (803)
........|.|.++..+|+|.|+|.|.|..|..
T Consensus 179 -----------------------------------------------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 211 (231)
T 3ojm_B 179 -----------------------------------------------INSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211 (231)
T ss_dssp -----------------------------------------------TTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred -----------------------------------------------cccCCccEEEEecCCHHHCeEEEEEEEeccceE
Confidence 001123459999999999999999999999988
Q ss_pred ee
Q psy2776 450 ET 451 (803)
Q Consensus 450 ~~ 451 (803)
..
T Consensus 212 ~~ 213 (231)
T 3ojm_B 212 NQ 213 (231)
T ss_dssp EE
T ss_pred ee
Confidence 66
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=180.32 Aligned_cols=167 Identities=12% Similarity=0.160 Sum_probs=114.3
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEee-eccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYS-VVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~-v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
....+|+.+.|.|.+.+ |+ .+.|+|+|..+..+ .+.+|.|.+ +..+|+|.|+|.|.|..|..+..+.+
T Consensus 9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~---------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC---------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC---------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence 34577999999999987 44 49999999988764 234799999 99999999999999999987666666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|....... ... ........... +...|...
T Consensus 78 ~v~~~~~~~-------------------------------------------~~~-~~~~~~~~~~~-----~~~~~~~~ 108 (186)
T 1jbj_A 78 RVGSADDAK-------------------------------------------KDA-AKKDDAKKDDA-----KKDGSQTN 108 (186)
T ss_dssp CCCSCCCCC-------------------------------------------CCC-CCCCCCSCCSS-----STTCCSCC
T ss_pred EEecccccc-------------------------------------------ccc-ccccccccCCc-----cccccccc
Confidence 654321000 000 00000000000 00000000
Q ss_pred ecc---ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 677 ERF---EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 677 ~~~---~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
... ....+.+|+++.|.|.+ |.|.+.|+|+|.++..... ....|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 109 ~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v-~~~D~G~Y~C~a~N~~g 177 (186)
T 1jbj_A 109 KAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNN-AKDPRGTYQCQGAKETS 177 (186)
T ss_dssp CCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEET-TSCCEEEEEEEESSCEE
T ss_pred cccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCC-CcCcCEEEEEEEEcCcC
Confidence 000 01235589999999988 8899999999999864432 3346999999 79999999999999999
Q ss_pred ce
Q psy2776 754 SA 755 (803)
Q Consensus 754 ~~ 755 (803)
+.
T Consensus 178 ~~ 179 (186)
T 1jbj_A 178 NP 179 (186)
T ss_dssp EE
T ss_pred Cc
Confidence 87
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=179.02 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=115.5
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC--eEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~--~s~s~~ 595 (803)
..+.+|+++.|.|.+.+ |.+.+.|+|+|... ......|.|.+++.+|+|.|+|.|.|..|. .+..+.
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 85 (184)
T 2gi7_A 17 SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR----------YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLE 85 (184)
T ss_dssp SEEETTCCEEEEEECST-TCSEEEEEETTTCC----------EESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEE
T ss_pred ccccCCCcEEEEEeCCC-CCCEEEEEECCccc----------cCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEE
Confidence 36889999999999988 78899999998651 123568999999999999999999998753 344556
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.... .+|.+
T Consensus 86 l~V~~~~--------------------------------------------------------------------~~p~i 97 (184)
T 2gi7_A 86 LVATGVF--------------------------------------------------------------------AKPSL 97 (184)
T ss_dssp EEEESSS--------------------------------------------------------------------CCCEE
T ss_pred EEecCcC--------------------------------------------------------------------CCCEE
Confidence 6663311 14555
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+..... .......|.|.++ +.+|+|.|+|.|.|..+.
T Consensus 98 ~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~----~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 98 SAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP----ERWYRASFPIITV-TAAHSGTYRCYSFSSRDP 169 (184)
T ss_dssp EEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC----CEEEEESSSEEEE-TTCCSEEEEEEEECTTST
T ss_pred EeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec----CCCceEEEEEccC-CccCCeEEEEEEEeCCCC
Confidence 5444 45678999999999987654 69999999988765322 1233456999999 799999999999998653
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=174.15 Aligned_cols=174 Identities=22% Similarity=0.388 Sum_probs=125.2
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.... ...|.|.+++.+|+|.|+|.+.|..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec-CCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 56777778889999999999999999999999999999877652 2333322 3469999999999999999999987
Q ss_pred cCeee--EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 221 GTAET--SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 221 g~~~~--s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
+.... ...+.|..+|...
T Consensus 81 ~~~~~~~~~~l~v~~~p~~~------------------------------------------------------------ 100 (189)
T 2v5t_A 81 RGEIDFRDIIVIVNVPPAIS------------------------------------------------------------ 100 (189)
T ss_dssp TTEEEEEEEEEEEEEEEEEE------------------------------------------------------------
T ss_pred CCceEEEEEEEEecCCCCcc------------------------------------------------------------
Confidence 65443 3445444432100
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
....+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......+..
T Consensus 101 ----------~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~--------------------- 149 (189)
T 2v5t_A 101 ----------MPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--------------------- 149 (189)
T ss_dssp ----------CSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET---------------------
T ss_pred ----------cccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec---------------------
Confidence 0000112345679999999999 88999999999999887654433321
Q ss_pred EEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 378 VLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 378 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
+...|+|.++..+|+|.|+|.|.|..|....+
T Consensus 150 -------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 181 (189)
T 2v5t_A 150 -------------------------------------------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181 (189)
T ss_dssp -------------------------------------------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred -------------------------------------------CCCEEEEcCCChhhCeeEEEEEEeCCCceeEE
Confidence 22358888899999999999999999887763
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=179.16 Aligned_cols=176 Identities=11% Similarity=0.123 Sum_probs=128.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|. +.... ...++.+........|.|.++..+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ 88 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence 46788999999999999999999999983 22110 22455555566678999999999999999999
Q ss_pred EEcCCC---CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeee
Q psy2776 583 ATNAAG---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659 (803)
Q Consensus 583 a~n~~g---~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~ 659 (803)
|.|..| .....+.|.|...+
T Consensus 89 ~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------------- 111 (213)
T 3mj8_L 89 SWDGTNSAWVFGSGTKVTVLGQP--------------------------------------------------------- 111 (213)
T ss_dssp EEETTTTEEEEBCCEEEEEECSC---------------------------------------------------------
T ss_pred eccCCcceeEEcCceEEEEeCCC---------------------------------------------------------
Confidence 999987 33445566664311
Q ss_pred eeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCe--EEEeeCc---eEEEEE
Q psy2776 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK--REIFDGE---NIILEL 732 (803)
Q Consensus 660 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~--~~~~~~~---~~~L~i 732 (803)
..+|.+...+....+.+|+.++|.|.+.|. |+ +.+.|+++|.++..+... ....++. ...|.|
T Consensus 112 ----------~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i 181 (213)
T 3mj8_L 112 ----------NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTM 181 (213)
T ss_dssp ----------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEE
T ss_pred ----------CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEE
Confidence 126666666555555689999999999986 44 389999999998653111 0111111 245899
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
.++ ..+|+|.|+|.|.|..|....++.
T Consensus 182 ~~~-~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 182 TAD-AWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp ESH-HHHSCSCEEEEEEETTEEEEEEEC
T ss_pred eHH-HcCCCCEEEEEEEECCccEEeeec
Confidence 999 689999999999999987766553
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=173.80 Aligned_cols=169 Identities=9% Similarity=0.040 Sum_probs=122.6
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC--eEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLSL 596 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~--~s~s~~l 596 (803)
.+.+|++++|.|.+.+ +++.+.|+|+|..+..... .......+..|.|.+++.+|+|.|+|.|.|..+. .+..+.|
T Consensus 14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l 91 (188)
T 1oll_A 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 91 (188)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEE
Confidence 6889999999999876 4578999999987652100 0011235678999999999999999999986542 3455666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|.... .+|.+.
T Consensus 92 ~V~~~~--------------------------------------------------------------------~~p~i~ 103 (188)
T 1oll_A 92 VVTEMY--------------------------------------------------------------------DTPTLS 103 (188)
T ss_dssp EEESCS--------------------------------------------------------------------CCCEEE
T ss_pred EecccC--------------------------------------------------------------------CCCeEE
Confidence 664311 145555
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc---
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG--- 753 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G--- 753 (803)
..+ ...+.+|+.++|.|.+.+ +.+.+.|+|+|..+.. ..........|.|.++ +.+|+|.|+|.|.|...
T Consensus 104 ~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~n~~~~~s 176 (188)
T 1oll_A 104 VHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPV-TTAHRGTYRCFGSYNNHAWS 176 (188)
T ss_dssp EES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEEECSSEEEEEEEEC-CGGGCEEEEEECEEETTEEC
T ss_pred ECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----cccCCCceeEEEECCC-CcCCCcEEEEEEEcCCCcCC
Confidence 444 456889999999999875 5578999999877643 1223355678999999 79999999999999752
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
..+..+.|.|.
T Consensus 177 ~~S~~~~l~V~ 187 (188)
T 1oll_A 177 FPSEPVKLLVT 187 (188)
T ss_dssp CCCCCEEEEEE
T ss_pred CCCCcEEEEec
Confidence 33556666664
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=169.47 Aligned_cols=154 Identities=19% Similarity=0.248 Sum_probs=118.9
Q ss_pred ceEEeecceeEEEEEEcCcC-CCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-RPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.| .+.+.|+|+|..+... ...+.|.+++.+|+|.|+|.|.|..+.. .+.
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~d~G~Y~C~~~~~~~s~--~~~ 80 (170)
T 3ry4_A 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQTSLSD--PVH 80 (170)
T ss_dssp CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEEETTSBCCC--CEE
T ss_pred CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC----------ccceEEEecccccCeEEEEEEeCCCceE--eEE
Confidence 45688999999999999987 5799999999988764 2346678999999999999999865443 455
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. +|.+
T Consensus 81 l~v~~-----------------------------------------------------------------------~~~~ 89 (170)
T 3ry4_A 81 LTVLF-----------------------------------------------------------------------EWLV 89 (170)
T ss_dssp EEEEC-----------------------------------------------------------------------CSEE
T ss_pred EEEEC-----------------------------------------------------------------------CceE
Confidence 55544 2222
Q ss_pred EeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.. .....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ......|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 90 ~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--------~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 90 LQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSIPQA-NHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp EE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE--------ESSCCEEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred ec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc--------cCCCCeEEEEec-cccCCEEEEEEEEeCcCc
Confidence 22 224567889999999999 4557789999999988642 123447999999 789999999999999997
Q ss_pred -eeeeEEEEE
Q psy2776 755 -ATHGARVTV 763 (803)
Q Consensus 755 -~~~~~~l~V 763 (803)
.+..+.|.|
T Consensus 160 ~~s~~~~l~V 169 (170)
T 3ry4_A 160 FSSKPVTITV 169 (170)
T ss_dssp EECCCEEEEE
T ss_pred cccccEEEEE
Confidence 466666665
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=176.12 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=121.2
Q ss_pred CCceeeeccc--cceeEEEEecCCceeeEEeec---CeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccc
Q psy2776 312 LPSVTLVPHL--GDATFQVELSSPDIQVKWLKK---GKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 312 ~~~~~~~~~g--~~~~l~C~~~~p~~~i~W~~~---g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
.|....+.+| +++.|.|.+..|.+.+.|+++ |..+..+......
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~~~~~~~~------------------------------- 61 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD------------------------------- 61 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCCSSSCEEE-------------------------------
T ss_pred CceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccCCCccccc-------------------------------
Confidence 3467778889 999999999668899999884 6655543222111
Q ss_pred eeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEee
Q psy2776 387 SKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSL 466 (803)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~ 466 (803)
....|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 62 ----------------------------------~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~-------------- 93 (213)
T 2x1w_L 62 ----------------------------------SKKGFTIPSYMISYAGMVFCEAKINDESYQSI-------------- 93 (213)
T ss_dssp ----------------------------------TTTEEEEEGGGTTTCSEEEEEEC----CEECC--------------
T ss_pred ----------------------------------CCccEEEccCChhcCceEEEEEEECCeeEEEE--------------
Confidence 11248899999999999999999854332221
Q ss_pred eccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEee
Q psy2776 467 RKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMK 544 (803)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~ 544 (803)
.+.|.|.. +..+. +...+.....+.+|++++|.|.+.|.|. +.+.|++
T Consensus 94 ---------------------------~~~l~v~~-~~~p~--~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~ 143 (213)
T 2x1w_L 94 ---------------------------MYIVVVVG-YRIYD--VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 143 (213)
T ss_dssp ---------------------------CEEEEECB-CCEEE--EEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC
T ss_pred ---------------------------EEEEEEeC-Ccccc--eEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe
Confidence 12333321 11111 1111222347899999999999998654 5799999
Q ss_pred CCeeecCCCc-EEEEe-------cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 545 NGAEITDSKA-CRIFI-------DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 545 ~g~~i~~~~~-~~~~~-------~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+|..+..... ..... ....++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 144 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp SCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred cCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 9876533211 00000 1124689999999999999999999999999999999998866
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=174.39 Aligned_cols=177 Identities=19% Similarity=0.288 Sum_probs=126.3
Q ss_pred CceeeeccccceeEEEEe-cCC-ceeeEEee-cCeecccc-ceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSP-DIQVKWLK-KGKEIKES-ARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~-~g~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
|....+.+|+.+.|.|.+ +.| .+.+.|++ +|..+... .++.+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~-------------------------------- 56 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW-------------------------------- 56 (191)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEE--------------------------------
T ss_pred CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEE--------------------------------
Confidence 344556779999999999 655 89999999 88777632 2222111
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
...+...|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 57 -----------------------------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~---------------- 91 (191)
T 1epf_A 57 -----------------------------NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA---------------- 91 (191)
T ss_dssp -----------------------------EETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE----------------
T ss_pred -----------------------------CCCCceEEEEccCCcccCEEEEEEEEcCCCcceEE----------------
Confidence 12345679999999999999999999987432221
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.+..+|.+.. ......+.+|+.+.|.|.+.|.|.+.+.|+++|..
T Consensus 92 -------------------------~~~l~v~~~p~~~~------~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~ 140 (191)
T 1epf_A 92 -------------------------TVNVKIFQKLMFKN------APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140 (191)
T ss_dssp -------------------------EEEEEEECCSEEEE------CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEE
T ss_pred -------------------------EEEEEeecCceEec------CCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEE
Confidence 34445555543211 11346678899999999999999999999999998
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+......++.... +..|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 141 ~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 141 VILKKDVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp GGGGCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred eeccCCceEEEec-CCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 8654322222222 347999999999999999999999876666555554
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=178.50 Aligned_cols=189 Identities=19% Similarity=0.333 Sum_probs=131.9
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..- ....+. ..
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~--------~~--------------------- 53 (212)
T 1f97_A 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTAL----VCYNSQ--------IT--------------------- 53 (212)
T ss_dssp SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEE----EEETTE--------EC---------------------
T ss_pred cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeE----EecCCc--------cc---------------------
Confidence 3455667789999999999 7799999999987653210 000000 00
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.....++...+ ..|.|.+++.+|+|.|+|.+.+..|....+.
T Consensus 54 -------------------~~~~~r~~~~~--~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~----------------- 95 (212)
T 1f97_A 54 -------------------APYADRVTFSS--SGITFSSVTRKDNGEYTCMVSEEGGQNYGEV----------------- 95 (212)
T ss_dssp -------------------GGGTTTEEEET--TEEEESCCCGGGCEEEEEEEEETTSSSEEEE-----------------
T ss_pred -------------------ccccCcEEeec--eeEEEcccCcccCeEEEEEEEccCCCcccEE-----------------
Confidence 00001112222 5699999999999999999999876322211
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEE-EcCcCCCeeEEeeCCe-e
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK-YFGFPRPEISWMKNGA-E 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~-~~g~p~~~v~W~~~g~-~ 548 (803)
.+.|.|..+|..+.... ...+.+|+.+.|.|. +.|.|.+.+.|++++. .
T Consensus 96 -----------------------~~~l~V~~~p~~~~~~~------~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~ 146 (212)
T 1f97_A 96 -----------------------SIHLTVLVPPSKPTISV------PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM 146 (212)
T ss_dssp -----------------------EEEEEEEBCCCCCEEEC------CSEEETTSCEEEEEECSCCBSCCEEEEEETTEES
T ss_pred -----------------------EEEEEEEcCCCCcccCC------ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccc
Confidence 56667777776654431 356889999999999 7999999999999999 8
Q ss_pred ecCCCc-------EEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEEEee
Q psy2776 549 ITDSKA-------CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQVLG 600 (803)
Q Consensus 549 i~~~~~-------~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~V~~ 600 (803)
+..... ...........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 147 LTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp BC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 775432 122333456789999999999999999999999998 5566666654
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=180.11 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=130.7
Q ss_pred ceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeec---------CCC--cEEEE----------ecCCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEIT---------DSK--ACRIF----------IDEETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~---------~~~--~~~~~----------~~~~~~~L~i~~v~~~ 574 (803)
...+.+|+.+.|.|.+.+.|. +.+.|++++.... ... ..++. ...+ +.|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~L~i~~v~~~ 87 (231)
T 2pet_A 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-GRLVLAEAQVG 87 (231)
T ss_dssp EEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-CCEEESSCCGG
T ss_pred cEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-ceEEEcccCcc
Confidence 577899999999999999985 8999998654311 111 11221 2222 34999999999
Q ss_pred cCeEEEEEEEcCC-CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 575 DTSTYTVTATNAA-GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 575 dsG~Y~C~a~n~~-g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
|+|.|+|.|.|.. +..+..+.|.|..+|
T Consensus 88 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p--------------------------------------------------- 116 (231)
T 2pet_A 88 DERDYVCVVRAGAAGTAEATARLNVFAKP--------------------------------------------------- 116 (231)
T ss_dssp GCEEEEEEEECGGGCEEEEEEEEEEEBCC---------------------------------------------------
T ss_pred cCceEEEEEEecCCCceEEEEEEEEEecC---------------------------------------------------
Confidence 9999999999997 788888888887643
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeE-EEEEEE-eecCCCceEEeeCCeeccCCC----CeEEEeeCc-
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI-RLMAKV-KASPAPSIVWFRNNKPLLSSP----KKREIFDGE- 726 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v-~L~C~~-~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~- 726 (803)
..|.+...+....+.+|+.+ .|.|.+ .|.|.|.+.|+++|.++.... ++.+.....
T Consensus 117 -----------------~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (231)
T 2pet_A 117 -----------------EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVR 179 (231)
T ss_dssp -----------------CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEE
T ss_pred -----------------CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEe
Confidence 14556655556667789988 999999 899999999999999987665 444443211
Q ss_pred --------eEEEEEecCCCCCCceeEEEEEEc-----cCcc-eeeeEEEEE
Q psy2776 727 --------NIILELKEADSETDAGDYKVVATN-----ELGS-ATHGARVTV 763 (803)
Q Consensus 727 --------~~~L~i~~v~~~~D~G~Y~C~a~N-----~~G~-~~~~~~l~V 763 (803)
...|.|... ..+|+|.|+|.|.| ..|. .+..+.|.|
T Consensus 180 ~~~g~~~~~~~L~i~~~-~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 180 EASGLLSLTSTLYLRLR-KDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CTTSCEEEEEEEEEECC-GGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred cCCCeEEEEEEEEEecc-hhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 256888755 55569999999999 5666 566665554
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-19 Score=177.93 Aligned_cols=191 Identities=13% Similarity=0.156 Sum_probs=132.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eee-----------------cCCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEI-----------------TDSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i-----------------~~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.|.| .+.+.|+|++ ..+ ....++.+..+ .+..+|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 90 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999999987 5789999842 111 01245555543 3467899999999
Q ss_pred CcCeEEEEEEEcCCCC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCC
Q psy2776 574 ADTSTYTVTATNAAGS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~ 651 (803)
+|+|.|+|.|.|..+. ....+.|.|...+... +..
T Consensus 91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~------------------------------------------~~~- 127 (247)
T 2ghw_B 91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGS------------------------------------------GGG- 127 (247)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEECSCC-------------------------------------------------
T ss_pred HHCEEEEEeeeccCCccccCCceEEEEecccccc------------------------------------------ccc-
Confidence 9999999999997322 1223456665432000 000
Q ss_pred CccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeec------------cCCC
Q psy2776 652 EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPL------------LSSP 717 (803)
Q Consensus 652 ~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l------------~~~~ 717 (803)
.+.....+|.+...+....+.+|++++|.|.+.|.|.+.+.|+| ++..+ ....
T Consensus 128 -------------~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~ 194 (247)
T 2ghw_B 128 -------------GSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPD 194 (247)
T ss_dssp -------------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCT
T ss_pred -------------ccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCC
Confidence 00001125566666677889999999999999999999999999 55443 1245
Q ss_pred CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 718 KKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 718 ~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
++.+..++...+|.|.++ +.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 195 r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 195 RFSGSGSGTDFTLTISRL-EPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp TEEEECSSSEEEEEECSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CEEEecCCCeEEEEECcC-CHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 666655667788999999 7999999999999965443 344566664
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=169.45 Aligned_cols=165 Identities=18% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccce---eEEEe--cC-------eeEEEEecCCCCcce
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGR---NITYE--NN-------VARFTVVNCSESSEG 210 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~---~~~~~--~~-------~~~L~i~~v~~~d~G 210 (803)
+|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+... +.... .. ...|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 56788888999999999999999999 8999999999999988644 22222 21 468999999999999
Q ss_pred EEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 211 RYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 211 ~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|+|.+.|..|.... .+.|.|...|.
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~----------------------------------------------------- 108 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEGLPY----------------------------------------------------- 108 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECCSCE-----------------------------------------------------
T ss_pred EEEEEEEeCCCceecccEEEEEecCCe-----------------------------------------------------
Confidence 999999998876543 36777765420
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCce-eeEEeecCeeccccceeEEEEcCceeEEEEee
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 367 (803)
+. ..+....+.+|+.+.|.|.+ +.|.+ .+.|+++|..+...... .....|.|.+
T Consensus 109 ------------------~~-~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~ 164 (195)
T 2c5d_C 109 ------------------FL-EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPG 164 (195)
T ss_dssp ------------------EE-ECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECC
T ss_pred ------------------EE-cCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcc
Confidence 10 11223455679999999999 89999 99999999988765443 3446789998
Q ss_pred cCCCCCccEEEEEeccccce
Q psy2776 368 VTQDDETDIGVLALNVKSVS 387 (803)
Q Consensus 368 ~~~~d~g~y~c~~~~~~~~~ 387 (803)
+. |+|.|+|.|.|..|..
T Consensus 165 ~~--d~G~Y~C~a~N~~g~~ 182 (195)
T 2c5d_C 165 LN--KTSSFSCEAHNAKGVT 182 (195)
T ss_dssp CS--SCEEEEEEEEETTEEE
T ss_pred cc--cCceEEEEEEcCCCce
Confidence 87 7899999999987654
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=182.31 Aligned_cols=129 Identities=14% Similarity=0.186 Sum_probs=84.7
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.|.|..+..... ...|.
T Consensus 109 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~-----------------------------------------~~~l~ 147 (254)
T 2c1o_A 109 SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGA-----------------------------------------GTKLE 147 (254)
T ss_dssp ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBC-----------------------------------------CEEEE
T ss_pred CCCEEEEEECcCCcccCEEEEEEEEcCcceEecC-----------------------------------------CEEEE
Confidence 3456689999999999999999999875432221 12233
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCC-c-EEEEecCC-----eEEEEEe
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSK-A-CRIFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~-~-~~~~~~~~-----~~~L~i~ 569 (803)
|...+..|.+.+... ......|+.+.|.|.+.|.++ +.+.|+|+|..+..+. . .......+ .+.|.|.
T Consensus 148 V~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~ 224 (254)
T 2c1o_A 148 LKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 224 (254)
T ss_dssp ECCCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred ECCCCCCCeeEeecC---ChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEec
Confidence 333222222222111 111235789999999988544 4699999999887651 1 11111111 4689999
Q ss_pred eeccCcCeEEEEEEEcCCCCeE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
++..+|+|.|+|.|.|......
T Consensus 225 ~~~~~d~G~Y~C~a~n~~~~~~ 246 (254)
T 2c1o_A 225 KDEYERHNSYTCEATHKTSTSP 246 (254)
T ss_dssp HHHHHTCCEEEEEEECTTCSSC
T ss_pred cccccCCCeEEEEEEcCCCCCc
Confidence 9999999999999999977643
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=176.85 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=123.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--eee----------cC--CCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AEI----------TD--SKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~i----------~~--~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|++ ..+ .. ..++.+........|.|.++..+|+|.|+|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (213)
T 3d9a_L 10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ 89 (213)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEe
Confidence 577899999999999999998999999853 211 11 2456665555677999999999999999999
Q ss_pred EEcCCCCeE-EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGSTS-LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~s-~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+... ....|.|...
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~------------------------------------------------------------ 109 (213)
T 3d9a_L 90 QSNSWPYTFGGGTKLEIKRA------------------------------------------------------------ 109 (213)
T ss_dssp ECSSSSCEECCCEEEEECCC------------------------------------------------------------
T ss_pred eecCCcceeCCCEEEEEecC------------------------------------------------------------
Confidence 999877532 2335555331
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeE--EEe--eC---ceEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKR--EIF--DG---ENIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~--~~~--~~---~~~~L~i 732 (803)
..+|.+........+..|+.++|.|.+.| .|.+ .+.|+++|.++..+.... ... ++ ....|.|
T Consensus 110 --------~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 181 (213)
T 3d9a_L 110 --------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 181 (213)
T ss_dssp --------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEE
T ss_pred --------CCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEE
Confidence 11455554443333447999999999988 5665 899999999986651110 011 11 1358999
Q ss_pred ecCCCCCCceeEEEEEEccCccee
Q psy2776 733 KEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++ ..+|+|.|+|.|.|......
T Consensus 182 ~~~-~~~d~G~Y~C~a~n~~~~~~ 204 (213)
T 3d9a_L 182 TKD-EYERHNSYTCEATHKTSTSP 204 (213)
T ss_dssp EHH-HHHHCCEEEEEEECTTCSSC
T ss_pred ecc-ccCCCCEEEEEEEEccCCCc
Confidence 999 78999999999999887754
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=180.82 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=130.1
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Cee---ec-------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAE---IT-------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~---i~-------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+.++|.|.+.|.| .+.+.|+|+ +.. +. ...++.+..+ ....+|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (257)
T 1f3r_B 9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD 88 (257)
T ss_dssp CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence 35688999999999999985 689999986 221 10 1245555542 45679999999999
Q ss_pred cCeEEEEEEEcCCCC------e---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 575 DTSTYTVTATNAAGS------T---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~------~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
|+|.|.|.|.|..|. . ...+.|.|...+.
T Consensus 89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------ 126 (257)
T 1f3r_B 89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGG------------------------------------------ 126 (257)
T ss_dssp CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCC------------------------------------------
T ss_pred cCEEEEEEEcccccCccccccccccCCceEEEEEeCCc------------------------------------------
Confidence 999999999998651 1 1234555544210
Q ss_pred CCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeecc---------
Q psy2776 646 SVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL--------- 714 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l~--------- 714 (803)
..+. ..+.....++.+...+....+.+|++++|.|.+.|.|.+.+.|+| +|..+.
T Consensus 127 ~~~~--------------~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~ 192 (257)
T 1f3r_B 127 GSGG--------------GGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSL 192 (257)
T ss_dssp SSCC--------------SSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEE
T ss_pred cccc--------------cccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCC
Confidence 0000 000001113344455556778999999999999999989999999 554331
Q ss_pred ---CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 715 ---SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 715 ---~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
...++.+..++....|.|.++ +.+|+|.|+|.|.|....-.....|.|+
T Consensus 193 ~~~~~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~~~g~gt~l~V~ 244 (257)
T 1f3r_B 193 QTGIPSRFSGSGSGTDYTLTISSL-QPEDVATYFCYQYNNGYTFGAGTKLELK 244 (257)
T ss_dssp CTTCCTTEEEEEEBTEEEEEECSC-CGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred CCCcCCCEEEecCCCEEEEEECCC-ChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence 135666665667789999999 7999999999999975222344556663
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=175.84 Aligned_cols=176 Identities=13% Similarity=0.194 Sum_probs=129.9
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+ +..+. ...++.+..+ .+..+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (256)
T 1nqb_A 9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS 88 (256)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence 46788999999999999876 579999984 22220 1245555543 3467999999999
Q ss_pred CcCeEEEEEEEcCCCC-----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 574 ADTSTYTVTATNAAGS-----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~-----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+|+|.|.|.|.|..|. ....+.|.|..
T Consensus 89 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~------------------------------------------------ 120 (256)
T 1nqb_A 89 EDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS------------------------------------------------ 120 (256)
T ss_dssp GGCEEEEEEECCTTSSSSCSEECCCEEEEECC------------------------------------------------
T ss_pred hhCEEEEEEEeeccCccceeEEcCceeeeecc------------------------------------------------
Confidence 9999999999998663 11234455533
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-----ceEEee--CCeecc-------
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-----SIVWFR--NNKPLL------- 714 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-----~v~W~~--~~~~l~------- 714 (803)
+|.+...+....+.+|++++|.|.+.|.|.+ .+.|+| +|..+.
T Consensus 121 -----------------------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~ 177 (256)
T 1nqb_A 121 -----------------------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVS 177 (256)
T ss_dssp -----------------------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTT
T ss_pred -----------------------cccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeC
Confidence 4555566667789999999999999998875 999999 555431
Q ss_pred -----CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 715 -----SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 715 -----~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
...++.........+|.|.++ +.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 178 ~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 178 NRFSGVPDRFSGSGSGTDFTLKISRV-EAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp EECTTCCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCCccCCcEEEEccCCEEEEEECCC-ChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 135666666667789999999 7999999999999965432 334556664
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=178.61 Aligned_cols=129 Identities=20% Similarity=0.267 Sum_probs=102.4
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+..|.... .+.|.|.
T Consensus 82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~------------------------------------------~~~l~V~ 119 (214)
T 3jz7_A 82 GDASINVTNLQLSDIGTYQCKVKKAPGVANK------------------------------------------KFLLTVL 119 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTEEEEE------------------------------------------EEEEEEE
T ss_pred CcccEEEccCChhhCeEEEEEEEeCCCcccc------------------------------------------EEEEEEE
Confidence 5667999999999999999999998876654 5667777
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCC--eeecCCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNG--AEITDSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g--~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
.+|.++.... ...+.+|+.+.|.|.+ .|.|.+.+.|++++ ..+..... ....+..|.|.++..+|+|
T Consensus 120 ~~p~~~~~~~------~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G 189 (214)
T 3jz7_A 120 VKPSGTRCFV------DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL----AEMTSPVISVKNASSEYSG 189 (214)
T ss_dssp CCCBSCEEEE------ESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG----GGTTSSEEEECSCCGGGCE
T ss_pred cCCCCceeee------ecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce----eccCCCEEEEecCCHHHCE
Confidence 7777654432 2336789999999999 89999999999954 33332211 1223459999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
.|+|.|.|..|..+.++.|.|..+
T Consensus 190 ~Y~C~a~N~~g~~~~~~~l~V~~P 213 (214)
T 3jz7_A 190 TYSCTVQNRVGSDQCMLRLDVVPP 213 (214)
T ss_dssp EEEEEEECSSCEEEEEEEECCBCC
T ss_pred EEEEEEEcCCCcEEEEEEEEEeCC
Confidence 999999999999999999998754
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=165.46 Aligned_cols=165 Identities=24% Similarity=0.344 Sum_probs=124.0
Q ss_pred eeeccccceeEEEEe-cCCce--eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 316 TLVPHLGDATFQVEL-SSPDI--QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
..+.+|+.+.|.|.+ +.|.+ .+.|+|+|..+......
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------------------------------------- 47 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------------------------------------- 47 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----------------------------------------
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc----------------------------------------
Confidence 345679999999998 66665 99999999877653211
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
.....|.|. +.+|+|.|+|.|.|.. ..
T Consensus 48 ---------------------------~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~--------------------- 74 (184)
T 3b5h_A 48 ---------------------------GQKTEFKVD--SDDQWGEYSCVFLPEP---MG--------------------- 74 (184)
T ss_dssp ---------------------------CSEEEEEEC--GGGCCEEEEEEEESTT---SC---------------------
T ss_pred ---------------------------CCcEEEEEe--chhhCeEEEEEEECCc---Cc---------------------
Confidence 011234454 5789999999999721 11
Q ss_pred cCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC-CCeeEEee---CCe-
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP-RPEISWMK---NGA- 547 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p-~~~v~W~~---~g~- 547 (803)
.+.|.|..+|.+.... ....+.+|+.+.|.|.+.|.| .+.+.|++ ++.
T Consensus 75 ---------------------~~~l~V~~~P~~~~~~------~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~ 127 (184)
T 3b5h_A 75 ---------------------TANIQLHGPPRVKAVK------SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127 (184)
T ss_dssp ---------------------EEEEEECCSCCCEESC------SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCE
T ss_pred ---------------------EEEEEEecCCceeecC------CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCE
Confidence 4556666777543221 345688999999999999999 79999999 444
Q ss_pred eecCC--CcEEEEecCCeEEEEEeeec-cCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 548 EITDS--KACRIFIDEETSTIAIYSVV-RADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 548 ~i~~~--~~~~~~~~~~~~~L~i~~v~-~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+... .++.+......+.|.|.++. .+|+|.|+|.|.|..|....++.|.|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp ECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 44332 56777766777899999999 8999999999999999999999998864
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-19 Score=173.56 Aligned_cols=174 Identities=25% Similarity=0.420 Sum_probs=128.1
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-------eEEEecCe---eEEEEecCCCCcceE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-------NITYENNV---ARFTVVNCSESSEGR 211 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~~~~---~~L~i~~v~~~d~G~ 211 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... .....++. ..|.|.+++.+|+|.
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 86 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence 35678888888899999999999999999999999999999877532 11222221 134556789999999
Q ss_pred EEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 212 YTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 212 Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
|+|.+.|..|.. ...+.|.|...+..
T Consensus 87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~----------------------------------------------------- 113 (212)
T 2v9r_A 87 YVCVARNYLGEAVSHDASLEVAILRDD----------------------------------------------------- 113 (212)
T ss_dssp EEEEEEETTEEEECCCEEEEECEECSS-----------------------------------------------------
T ss_pred EEEEEECCCCceeecceEEEEEecccc-----------------------------------------------------
Confidence 999999998865 34567777654210
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeec
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~ 368 (803)
+...+....+..|+.+.|.|.+ +.|.+.+.|+++|..+..........+
T Consensus 114 ------------------~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~----------- 164 (212)
T 2v9r_A 114 ------------------FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG----------- 164 (212)
T ss_dssp ------------------CSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEET-----------
T ss_pred ------------------ceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccC-----------
Confidence 0111233445679999999997 689999999999988875432211111
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
..|.|.++..+|+|.|+|.|.|..|.
T Consensus 165 ------------------------------------------------------~~L~i~~~~~~d~G~Y~C~a~N~~g~ 190 (212)
T 2v9r_A 165 ------------------------------------------------------GKLMITYTRKSDAGKYVCVGTNMVGE 190 (212)
T ss_dssp ------------------------------------------------------TEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred ------------------------------------------------------CeEEEeeCCHhhCeeEEEEEecccCc
Confidence 14888889999999999999999887
Q ss_pred eee
Q psy2776 449 AET 451 (803)
Q Consensus 449 ~~~ 451 (803)
...
T Consensus 191 ~~s 193 (212)
T 2v9r_A 191 RES 193 (212)
T ss_dssp EEC
T ss_pred eec
Confidence 655
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-19 Score=174.08 Aligned_cols=171 Identities=13% Similarity=0.076 Sum_probs=121.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--eee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|++ ..+ ....++.+........|.|.++..+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (210)
T 1lk3_L 9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ 88 (210)
T ss_dssp EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEE
Confidence 577899999999999999998999999852 221 112456555555667999999999999999999
Q ss_pred EEcCCCCeE-EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGSTS-LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~s-~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+... ....|.|...
T Consensus 89 ~~~~~~~~~~~~~~l~V~~~------------------------------------------------------------ 108 (210)
T 1lk3_L 89 QSWNGPLTFGAGTKLELKRA------------------------------------------------------------ 108 (210)
T ss_dssp ECSSSSCEECCCEEEEECCC------------------------------------------------------------
T ss_pred EEcCCCceeCCCEEEEEcCC------------------------------------------------------------
Confidence 999876432 2334555331
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCC-CC-eEEEe--eCc---eEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS-PK-KREIF--DGE---NIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~-~~-~~~~~--~~~---~~~L~i 732 (803)
..+|.+...+....+..|+.++|.|.+.|. |.+ .|.|+++|.++..+ .. ..... ++. .+.|.|
T Consensus 109 --------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 180 (210)
T 1lk3_L 109 --------DAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSL 180 (210)
T ss_dssp --------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEE
T ss_pred --------CcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEE
Confidence 114555544433334579999999999985 554 89999999988655 11 00111 111 247999
Q ss_pred ecCCCCCCceeEEEEEEccCccee
Q psy2776 733 KEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++ ..+|+|.|+|.|.|......
T Consensus 181 ~~~-~~~d~G~Y~C~a~n~~~~~~ 203 (210)
T 1lk3_L 181 TKA-DYESHNLYTCEVVHKTSSSP 203 (210)
T ss_dssp EHH-HHHTCCEEEEEEECTTCSSC
T ss_pred ChH-HhccCCcEEEEEEecCCCCe
Confidence 999 68999999999999877543
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=169.69 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=69.5
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEE--ecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY--ENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.+|.|...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+....... ......|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV 81 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence 46777777776 7889999999999988 778999999998776432111 2456789999999999999999999998
Q ss_pred cC--eeeEEEEEEee
Q psy2776 221 GT--AETSCTLLVQG 233 (803)
Q Consensus 221 g~--~~~s~~l~V~~ 233 (803)
|. ....+.|.|..
T Consensus 82 g~~~~s~~~~l~V~~ 96 (196)
T 3p2t_A 82 GWSQPSDPLELVMTG 96 (196)
T ss_dssp EEBCCCCCEEEEEEC
T ss_pred cccCCCccEEEEecC
Confidence 83 33445666654
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=179.31 Aligned_cols=180 Identities=14% Similarity=0.191 Sum_probs=124.1
Q ss_pred ceEEeecceeEEEEEEcCcCC-----CeeEEeeCCeeec-------------CCCcEEEEe---cCCeEEEEEeeeccCc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-----PEISWMKNGAEIT-------------DSKACRIFI---DEETSTIAIYSVVRAD 575 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-----~~v~W~~~g~~i~-------------~~~~~~~~~---~~~~~~L~i~~v~~~d 575 (803)
...+.+|+.+.|.|.+.+.|. +.+.|++++.... ...+..+.. ..+...|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 355788999999999988764 7899999874320 112222211 1125689999999999
Q ss_pred CeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
+|.|+|.+.|. +..+..+.|.|..++
T Consensus 84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~----------------------------------------------------- 109 (222)
T 4i0k_A 84 EGSYTCFVSIQ-DFDSAAVSLQVAAPY----------------------------------------------------- 109 (222)
T ss_dssp CSCEEEEEEEC-CCCCCCCCCCCCBCC-----------------------------------------------------
T ss_pred CEEEEEEEEeC-CCceEEEEEEEEcCC-----------------------------------------------------
Confidence 99999999985 344444455443321
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEee-CCeeccCCCCeEEEe--eCceEEEE
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFR-NNKPLLSSPKKREIF--DGENIILE 731 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~-~~~~l~~~~~~~~~~--~~~~~~L~ 731 (803)
.+|.+...+ ...+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+.......... ++....|.
T Consensus 110 ---------------~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (222)
T 4i0k_A 110 ---------------SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHS 173 (222)
T ss_dssp ---------------CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEE
T ss_pred ---------------CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEE
Confidence 245444333 3467889999999999 889999999999 555554332222222 23455688
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEeec
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 767 (803)
|.++ +.+|+|.|+|.|.|.+|.....+.|.|.+++
T Consensus 174 i~~v-~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 208 (222)
T 4i0k_A 174 VLRV-VLGANGTYSCLVRNPVLQQDAHGSVTITGQP 208 (222)
T ss_dssp EEEE-ECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred EEEE-EeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence 9999 7899999999999999999999999986543
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-19 Score=171.82 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=130.5
Q ss_pred ccccccCCceeeeccccceeEEEE-e-cCCc-eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVE-L-SSPD-IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~-~-~~p~-~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
+.|....+....+.+|+.+.|.|. + +.|. +.+.|++++..+........
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~---------------------------- 59 (201)
T 3s97_C 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR---------------------------- 59 (201)
T ss_dssp CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSE----------------------------
T ss_pred CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCe----------------------------
Confidence 445555666777888999999999 6 7888 99999999877642111000
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
........|.|.+++.+|+|.|+|.+.+..+....... .+
T Consensus 60 ----------------------------------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~------~~ 99 (201)
T 3s97_C 60 ----------------------------------FVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK------FI 99 (201)
T ss_dssp ----------------------------------EECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECC------CE
T ss_pred ----------------------------------EEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhc------cc
Confidence 00111234888889999999999999987655444210 00
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEE
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W 542 (803)
.+.+.... .....+|. +. . ......+.+|+.+.|.|.+.|.|.+.+.|
T Consensus 100 ~~~~~~~~--------------------------~~~~~~p~---~~--~-~~~~~~~~~g~~~~l~C~~~g~p~p~v~W 147 (201)
T 3s97_C 100 PLIPIPER--------------------------TTKPYPAD---IV--V-QFKDVYALMGQNVTLECFALGNPVPDIRW 147 (201)
T ss_dssp EEEEECCS--------------------------SCCCEEEE---EE--E-ECCCEEEETTCCEEEEEEEEEESCCEEEE
T ss_pred ceeecccc--------------------------ccCCCCCc---eE--e-cCCceEEecCCcEEEEEEccCCCCCceEE
Confidence 11110000 00001111 11 1 11256788999999999999999999999
Q ss_pred eeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 543 MKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 543 ~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
++++..+.... .+. ..+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 148 ~~~~~~~~~~~--~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 148 RKVLEPMPSTA--EIS--TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp EETTBCCCTTC--EEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeCCCcCCCce--eec--CCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 99999777542 222 235689999999999999999999999999999999885
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=173.49 Aligned_cols=184 Identities=24% Similarity=0.394 Sum_probs=132.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-----eEEEecCee--EEEEecCCCCcceEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-----NITYENNVA--RFTVVNCSESSEGRYTC 214 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~~~~~~--~L~i~~v~~~d~G~Y~C 214 (803)
..+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++...++.. .|.|.+++.+|+|.|+|
T Consensus 7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 86 (217)
T 2vr9_A 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86 (217)
T ss_dssp CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence 56889999889999999999999999999999999999999887642 222222222 23788999999999999
Q ss_pred EEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 215 KATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 215 ~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
.+.|..|... ..+.|.|...+..
T Consensus 87 ~~~n~~g~~~~~~~~l~v~~~~~~-------------------------------------------------------- 110 (217)
T 2vr9_A 87 VAKNRVGQAVSRHASLQIAVLRDD-------------------------------------------------------- 110 (217)
T ss_dssp EEEETTEEEECCCEEEEECEECCS--------------------------------------------------------
T ss_pred EEecCCCccccccceEEEEEeCCC--------------------------------------------------------
Confidence 9999888653 3566666554210
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQD 371 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~ 371 (803)
+ ...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.............
T Consensus 111 --------------~-~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~------------ 163 (217)
T 2vr9_A 111 --------------F-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR------------ 163 (217)
T ss_dssp --------------C-SBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCS------------
T ss_pred --------------c-EECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCc------------
Confidence 0 111223445679999999997 78999999999999887543221111110
Q ss_pred CCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 372 DETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 372 d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
.... ....|.|.+++.+|+|.|+|.|.|..|....
T Consensus 164 --------------------------------------------~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~ 198 (217)
T 2vr9_A 164 --------------------------------------------VRIV-DGGNLLISNVEPIDEGNYKCIAQNLVGTRES 198 (217)
T ss_dssp --------------------------------------------EEEE-TTTEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred --------------------------------------------EEec-CCCcEEEeeCCHHHCeEEEEEEEcccceecc
Confidence 0111 1125889999999999999999999998877
Q ss_pred ec
Q psy2776 452 RT 453 (803)
Q Consensus 452 ~~ 453 (803)
+.
T Consensus 199 ~~ 200 (217)
T 2vr9_A 199 SY 200 (217)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=171.18 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=67.1
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCe-eEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..|.+...+....+.+|+.+.|.|.+.+.|.+. +.|+|++..+.... ..|.|.+++.+|+|.|+|.+.|.
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------~~L~i~~v~~~D~G~Y~C~a~n~-- 76 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------SSYFIDAATVDDSGEYRCQTQLS-- 76 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------SEEEESSCCGGGCEEEEEEETTS--
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------cEEEEecccccCCEEEEEEeCCC--
Confidence 456777777778899999999999999988776 99999998776432 68999999999999999999874
Q ss_pred CeeeEEEEEEeee
Q psy2776 222 TAETSCTLLVQGK 234 (803)
Q Consensus 222 ~~~~s~~l~V~~~ 234 (803)
.....+.|.|...
T Consensus 77 ~~s~~~~l~V~~~ 89 (204)
T 3sgj_C 77 TLSDPVQLEVHIG 89 (204)
T ss_dssp BCCCCEEEEEECS
T ss_pred cccccEEEEEecC
Confidence 3344566666544
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=178.16 Aligned_cols=188 Identities=15% Similarity=0.313 Sum_probs=130.6
Q ss_pred cCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 311 KLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
..+....+.+|+.+.|.|.+ +.|.+.+.|++++..+.... ...+. ....
T Consensus 9 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~--------~~~~------------------ 58 (209)
T 1nbq_A 9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV----CYNNK--------ITAS------------------ 58 (209)
T ss_dssp CSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEES----EETTE--------ECTT------------------
T ss_pred cCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEE----EecCc--------cCcc------------------
Confidence 34455666779999999999 77999999999875532100 00000 0000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
...++...+ ..|.|.+++.+|+|.|+|.+.+..|....+
T Consensus 59 ----------------------~~~r~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~----------------- 97 (209)
T 1nbq_A 59 ----------------------YEDRVTFLP--TGITFKSVTREDTGTYTCMVSEEGGNSYGE----------------- 97 (209)
T ss_dssp ----------------------TTTTCEEET--TEEECSCCCTTSCSEEEEEEEETTSSCEEC-----------------
T ss_pred ----------------------ccCceEeec--cEEEEeeCCHHHCcEEEEEEecCCCCccce-----------------
Confidence 001111122 569999999999999999999986633222
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCee
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAE 548 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~ 548 (803)
..+.|.|..+|..+.... ...+.+|+.+.|.|.+ .|.|.+.+.|+++|..
T Consensus 98 -----------------------~~~~l~V~~~p~~~~~~~------~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~ 148 (209)
T 1nbq_A 98 -----------------------VKVKLIVLVPPSKPTVNI------PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV 148 (209)
T ss_dssp -----------------------CEEECCEEBCCCCCCCCC------BSEEETTSCEEECCCCCSCBSCCEEEEEETTCC
T ss_pred -----------------------EEEEEEEecCCcCCCccc------ccceecCCEEEEEEeCCCCCCCceeEEEECCee
Confidence 156667777776655432 3457899999999996 8999999999999998
Q ss_pred ecCCCcE-------EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE--EEEEEEE
Q psy2776 549 ITDSKAC-------RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS--LDLSLQV 598 (803)
Q Consensus 549 i~~~~~~-------~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s--~s~~l~V 598 (803)
+...... ........+.|.|.++..+|+|.|+|.|.|..|... ..+.|.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 149 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred CCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 8765321 111223457899999999999999999999999984 4444444
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=169.35 Aligned_cols=132 Identities=22% Similarity=0.207 Sum_probs=87.5
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE--EEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI--TYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.+|.|...+.. .+.+|++++|.|.+.+.|. .+.|+|++..+..... ........|.|.+++.+|+|.|+|.+.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence 46777776664 7889999999999988765 8999999987653221 123456789999999999999999999987
Q ss_pred cCee--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 221 GTAE--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 221 g~~~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
|... ..+.|.|...+.
T Consensus 82 g~~~~s~~~~l~V~~~~~-------------------------------------------------------------- 99 (196)
T 2d3v_A 82 GWSEPSDPLELVVTGFYN-------------------------------------------------------------- 99 (196)
T ss_dssp EECBCCCCEEEEEECSSC--------------------------------------------------------------
T ss_pred CcCCcCccEEEEecCCCC--------------------------------------------------------------
Confidence 7543 345666654310
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeecc
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIK 347 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~ 347 (803)
.+.+. ..+. ..+.+|+.++|.|.+ +.| +.+.|+|+|..+.
T Consensus 100 ------~p~i~-~~~~-~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~ 140 (196)
T 2d3v_A 100 ------KPTLS-ALPS-PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKL 140 (196)
T ss_dssp ------CCEEE-C------------CEEEEEESSCC-SEEEEEEC---CC
T ss_pred ------CCeEE-ccCC-ccccCCCcEEEEEEcCCCC-CEEEEEccCCccc
Confidence 01111 1111 345679999999999 777 8999999988775
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=174.79 Aligned_cols=192 Identities=14% Similarity=0.176 Sum_probs=130.6
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceee-----------------cCCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEI-----------------TDSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i-----------------~~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|. +..+ ....++.+..+ ....+|.|.+++.
T Consensus 10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 89 (253)
T 3uzq_A 10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTS 89 (253)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCc
Confidence 56788999999999999854 678999982 2111 01134555433 2356799999999
Q ss_pred CcCeEEEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 574 ADTSTYTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
+|+|.|.|.|.|..+.. .....|.|...+ .+...
T Consensus 90 ~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------~~~~~- 124 (253)
T 3uzq_A 90 GDTAVYYCSRGWEGFAYWGQGTLVTVSAGG--------------------------------------------GGSGG- 124 (253)
T ss_dssp GGCEEEEEEECSSSCCEECCCEEEEECSSS--------------------------------------------CCCCC-
T ss_pred ccCEEEEEEEeeCCccEECCCcEEEEecCC--------------------------------------------ccccc-
Confidence 99999999999966553 244556664310 00000
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC----ceEEeeC--Ceecc------------
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRN--NKPLL------------ 714 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~----~v~W~~~--~~~l~------------ 714 (803)
........+|.+...+....+.+|++++|.|.+.+.|.+ .+.|+|+ +..+.
T Consensus 125 -----------~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~ 193 (253)
T 3uzq_A 125 -----------GGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESG 193 (253)
T ss_dssp --------------------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTT
T ss_pred -----------cccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCc
Confidence 000001125667777777899999999999999998887 8999995 22211
Q ss_pred CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEe
Q psy2776 715 SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765 (803)
Q Consensus 715 ~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 765 (803)
...++.....+...+|.|.++ +.+|+|.|.|.|.|..+.. ..-..|.|..
T Consensus 194 ~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~ 244 (253)
T 3uzq_A 194 IPARFSGSGSRTDFTLTINPV-EADDVATYFCQRSNEVPWTFGGGTKLEIKR 244 (253)
T ss_dssp CCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred cCCceEEeCCCCEEEEEECCC-CHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence 235666666677789999999 7999999999999976544 3345566753
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-16 Score=181.85 Aligned_cols=405 Identities=14% Similarity=0.122 Sum_probs=228.1
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCC-CCcceEEEEEEEcCCcCeeeEEEEEEeeeec
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCS-ESSEGRYTCKATNEAGTAETSCTLLVQGKEI 236 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~ 236 (803)
.+..+.|.|.+.|.|.|.+.|.++|..+.... ...+.|..+. ...++.|+|.+.|..|..... .+.+...+.
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~~ 162 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWN------RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHPC 162 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSCE------EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSCC
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCcee------EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeeccc
Confidence 34589999999999999999999997664321 2346666553 344589999888877754321 111211100
Q ss_pred ccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCcee
Q psy2776 237 KESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVT 316 (803)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (803)
...+.|. . +...
T Consensus 163 ------------------------------------------------------------------~~~p~~~-~-~~~~ 174 (731)
T 2v5y_A 163 ------------------------------------------------------------------TRTPHFL-R-IQNV 174 (731)
T ss_dssp ------------------------------------------------------------------SSSCEEC-C-CCCE
T ss_pred ------------------------------------------------------------------ccccccc-c-ccce
Confidence 0111222 1 2345
Q ss_pred eeccccceeEEEEe-cCCceeeE-Ee--ecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 317 LVPHLGDATFQVEL-SSPDIQVK-WL--KKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~~p~~~i~-W~--~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
.+..|+++.|.|.+ |.|.+.+. |+ ++|..+.......+..
T Consensus 175 ~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~------------------------------------ 218 (731)
T 2v5y_A 175 EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS------------------------------------ 218 (731)
T ss_dssp EEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCS------------------------------------
T ss_pred EEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEecc------------------------------------
Confidence 66789999999999 89999988 88 6777765322110000
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
......|+|.++...|.|.|+|.|.|..|.....
T Consensus 219 --------------------------~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~-------------------- 252 (731)
T 2v5y_A 219 --------------------------RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN-------------------- 252 (731)
T ss_dssp --------------------------SEEEEEEEECSCCTTTCEEEEEEEEETTEEEECC--------------------
T ss_pred --------------------------ccceEEEEEcccccccCeEEEEEEECCCCCccee--------------------
Confidence 0112469999999999999999999999874331
Q ss_pred cCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc----CCC--eeEEeeCC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF----PRP--EISWMKNG 546 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~----p~~--~v~W~~~g 546 (803)
...|.|..+|..+.... ........+.|.|..... |.. .+.|...+
T Consensus 253 ---------------------~~~l~V~~~P~~~~~p~-------~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~ 304 (731)
T 2v5y_A 253 ---------------------YAELVVKEPPVPIAPPQ-------LASVGATYLWIQLNANSINGDGPIVAREVEYCTAS 304 (731)
T ss_dssp ---------------------CEEEEEECCCCBSSCCE-------EEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESS
T ss_pred ---------------------eEEEEEecCCCCCCCcc-------eeccCCceEEEEeCCcccCCCCccEEEEEEEEECC
Confidence 34455666665433221 111234578888875322 222 45565543
Q ss_pred eeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE--cCCCCeEEEEEEEEeee-------E--e----Eeeecccc
Q psy2776 547 AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT--NAAGSTSLDLSLQVLGY-------I--I----QQQEKNSL 611 (803)
Q Consensus 547 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~--n~~g~~s~s~~l~V~~~-------p--~----~~~~~~~~ 611 (803)
. ............+.|.++...+...|.|.|. |..|....+..+.+... | + .......+
T Consensus 305 ~------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l 378 (731)
T 2v5y_A 305 G------SWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITI 378 (731)
T ss_dssp S------SCEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEE
T ss_pred C------CceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEE
Confidence 1 1111122234678999999999999999999 99887543322222211 1 0 00001112
Q ss_pred cE-------------------EEee------------eeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 612 KF-------------------TKVA------------TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 612 ~w-------------------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
.| .... ........+++.+|.+...|.|+|+|.|..|.+. +.. +..
T Consensus 379 ~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~--~~~ 455 (731)
T 2v5y_A 379 RWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQE--LIV 455 (731)
T ss_dssp EEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCC--EEE
T ss_pred EEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-Cce--EEE
Confidence 22 2111 1224456789999999999999999999999874 332 222
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC---CC--ceEEeeCCee---ccC-CCCeEEEeeCceEEEE
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP---AP--SIVWFRNNKP---LLS-SPKKREIFDGENIILE 731 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p---~~--~v~W~~~~~~---l~~-~~~~~~~~~~~~~~L~ 731 (803)
.+....+..+....+.. ......+.|.-.....+ -. .|.|...+.. +.. .....+...+....+.
T Consensus 456 ~T~~~~P~~p~~~~~~~------~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (731)
T 2v5y_A 456 QTDEDLPGAVPTESIQG------STFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFL 529 (731)
T ss_dssp ECCCCCCCCCCTTTCEE------EEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEE
T ss_pred EccCCCCCCCCcceEEe------eecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEE
Confidence 22222222111111111 11134555554322111 11 2334332211 111 1122233344555788
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.++ .....-.++..|.|..|....+. +.+.
T Consensus 530 i~~L-~p~t~Y~~~V~A~n~~G~g~~s~-~~~~ 560 (731)
T 2v5y_A 530 FFGL-YPGTTYSFTIRASTAKGFGPPAT-NQFT 560 (731)
T ss_dssp ECSC-CTTEEEEEEEEEEETTEEEEEEE-EEEE
T ss_pred ecCC-CCCCEEEEEEEEEeCCccCCCcc-cEEE
Confidence 8888 55555667889999999876653 4443
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=168.21 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=115.1
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCC-----CCeE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAA-----GSTS 591 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-----g~~s 591 (803)
..+.+|++++|.|.+.+ |.+.+.|+|+|..+...... ..........|.|.+++.+|+|.|+|.|.|.. ...+
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s 95 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence 56789999999999974 77899999999765432111 11112235789999999999999999998753 2234
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|...+ .
T Consensus 96 ~~~~l~V~~~~--------------------------------------------------------------------~ 107 (201)
T 1nkr_A 96 DPLDIVIIGLY--------------------------------------------------------------------E 107 (201)
T ss_dssp CCEEEEEECSS--------------------------------------------------------------------C
T ss_pred CCEEEEeeccC--------------------------------------------------------------------C
Confidence 55666664421 1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC-ceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG-ENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+. ..+.+|++++|+|.+.+ |.+.+.|+|+|..+...........+ ....|.|.++ + |+|.|+|.|.|
T Consensus 108 ~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~--d~G~Y~C~a~~ 182 (201)
T 1nkr_A 108 KPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA-T--HGGTYRCFGSF 182 (201)
T ss_dssp CCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEEC-C--SCEEEEEEEEE
T ss_pred CCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCc-C--CCeeEEEEEEc
Confidence 555655443 47889999999999986 67899999999877543222222222 2568999999 5 99999999997
Q ss_pred cC
Q psy2776 751 EL 752 (803)
Q Consensus 751 ~~ 752 (803)
..
T Consensus 183 ~~ 184 (201)
T 1nkr_A 183 HD 184 (201)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=167.71 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=64.0
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcC-eeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
..+.+|+.+.|.|.+.|.|.|.+.|+++. ..+. ......+....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~ 89 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEE
Confidence 34459999999999999999999999843 2222 233344456779999999999999999999998877777888887
Q ss_pred eee
Q psy2776 233 GKE 235 (803)
Q Consensus 233 ~~~ 235 (803)
..|
T Consensus 90 ~~p 92 (202)
T 1vca_A 90 SFP 92 (202)
T ss_dssp BCC
T ss_pred eCC
Confidence 653
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=172.31 Aligned_cols=177 Identities=13% Similarity=0.163 Sum_probs=120.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|+ |..+. ...++.+..+ .+..+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (219)
T 1c1e_H 9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN 88 (219)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence 46788999999999999875 688999987 33221 1235554432 3457999999999
Q ss_pred CcCeEEEEEEEcCCCCe----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 574 ADTSTYTVTATNAAGST----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|+|.|.|.|.|..+.. ...+.|.|...+
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------- 121 (219)
T 1c1e_H 89 EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK----------------------------------------------- 121 (219)
T ss_dssp GGCEEEEEEEEETTTTEEEEECCCEEEEECCCC-----------------------------------------------
T ss_pred ccCEEEEEEEeccCcccceeecCceEEEEecCC-----------------------------------------------
Confidence 99999999999986422 123455553311
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEEEeeCc-
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREIFDGE- 726 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~- 726 (803)
..+|.+........+.+|+.+.|.|.+.| .|.| .|.|+++|..+...........+.
T Consensus 122 --------------------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~ 181 (219)
T 1c1e_H 122 --------------------TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLY 181 (219)
T ss_dssp --------------------CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCE
T ss_pred --------------------CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeE
Confidence 12455544433345678999999999999 8999 999999998753111101111121
Q ss_pred --eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 727 --NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 727 --~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
...|.|... ..|.|.|+|.|.|..|.......|.
T Consensus 182 ~~~s~L~i~~~--~~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 182 TLSSSVTVPSS--PRPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp EEEEEEEEESS--STTTSCCEEEEEEGGGTEEEEEECC
T ss_pred EEEEEEEEecc--cCCCCEEEEEEEeCCCCccEEEecC
Confidence 246888554 3467999999999999876555443
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=171.71 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=120.4
Q ss_pred ceEEeecceeEEEEEEcCc-CCCeeEEeeCC--ee-------------ec-C--CCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-PRPEISWMKNG--AE-------------IT-D--SKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-p~~~v~W~~~g--~~-------------i~-~--~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+. |.+.+.|+|.. .. .. . ..++.+........|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 4678899999999999999 89999999832 10 10 0 13555544556788999999999999
Q ss_pred EEEEEEEcCCCC-----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 578 TYTVTATNAAGS-----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 578 ~Y~C~a~n~~g~-----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
.|.|.|.|..|. ....+.|.|...+
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------- 118 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQP-------------------------------------------------- 118 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCC--------------------------------------------------
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCC--------------------------------------------------
Confidence 999999998762 2334455554311
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeE--EEeeCc--
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKR--EIFDGE-- 726 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~--~~~~~~-- 726 (803)
..+|.+...+....+..|+.++|.|.+.| .|.+ .+.|+++|.++..+.... ...++.
T Consensus 119 -----------------~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 181 (218)
T 3s96_B 119 -----------------KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFM 181 (218)
T ss_dssp -----------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEE
T ss_pred -----------------CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEE
Confidence 12566655444445556899999999998 5777 899999999986532211 111222
Q ss_pred -eEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 727 -NIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 727 -~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...|.|... ..+|+|.|+|.|.|..|....++
T Consensus 182 ~~s~l~i~~~-~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 182 ASSFLHLTSD-QWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp EEEEEEEEHH-HHHTCSCEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeHH-HccCCCeEEEEEEeCCCcccccc
Confidence 234888887 56889999999999998766544
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=174.58 Aligned_cols=191 Identities=15% Similarity=0.098 Sum_probs=128.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe-----eec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA-----EIT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-----~i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|++. .+. ...++.+.......+|.|.++..+|+|.|.|.
T Consensus 21 ~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 100 (276)
T 3auv_A 21 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ 100 (276)
T ss_dssp EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEE
Confidence 5678899999999999999999999998642 121 12456665555667999999999999999999
Q ss_pred EEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+. ......|.|...+...
T Consensus 101 ~~n~~~~~~~~~~~l~V~~~~~~~-------------------------------------------------------- 124 (276)
T 3auv_A 101 QHYTTPPTFGCGTKVEIKGGGGGS-------------------------------------------------------- 124 (276)
T ss_dssp ECSSSSCCCCCCEEEEC---------------------------------------------------------------
T ss_pred EecCCcccccCCEEEEEecCCCcc--------------------------------------------------------
Confidence 9997654 2333566665432000
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCC--eec-----------------cCCCCeE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KPL-----------------LSSPKKR 720 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~--~~l-----------------~~~~~~~ 720 (803)
...+.....++.++..+....+.+|++++|.|.+.|.| .+.+.|+|++ ..+ ....++.
T Consensus 125 -~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~ 203 (276)
T 3auv_A 125 -IEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFT 203 (276)
T ss_dssp -----------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEE
T ss_pred -ccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEE
Confidence 00000001133344455677899999999999999887 4899999963 211 1235666
Q ss_pred EEee--CceEEEEEecCCCCCCceeEEEEEEccC---cce--eeeEEEEEEe
Q psy2776 721 EIFD--GENIILELKEADSETDAGDYKVVATNEL---GSA--THGARVTVDV 765 (803)
Q Consensus 721 ~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~---G~~--~~~~~l~V~~ 765 (803)
+..+ .....|.|.++ +.+|+|.|+|.|.|.. +.. ....+|.|..
T Consensus 204 ~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~ 254 (276)
T 3auv_A 204 ISADTSKNTAYLQMNSL-RAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSS 254 (276)
T ss_dssp EEEEGGGTEEEEEECSC-CGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC-
T ss_pred EEecCCCcEEEEEECCC-ChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcc
Confidence 6554 45678999999 7999999999999983 221 2345677754
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=168.85 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=119.9
Q ss_pred ceEEeecceeEEEEEEc----CcCCCeeEEeeCCeeecC------------CCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYF----GFPRPEISWMKNGAEITD------------SKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~----g~p~~~v~W~~~g~~i~~------------~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+. +.|.+.+.|++++..+.. ..+..+. ..+...|.|.+++.+|+|.|+
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~ 81 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE 81 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence 46788999999999985 446789999999987631 0122221 224568999999999999999
Q ss_pred EEEEcCCCCeE-----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 581 VTATNAAGSTS-----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 581 C~a~n~~g~~s-----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.|..|... ..+.|.|...+
T Consensus 82 C~~~~~~g~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 108 (201)
T 1dr9_A 82 CVVLKYEKDAFKREHLAEVTLSVKADF----------------------------------------------------- 108 (201)
T ss_dssp EEEEECCTTSCEEEEEEEEEEEEECCC-----------------------------------------------------
T ss_pred EEEEcCCCCccccccccEEEEEEcCCC-----------------------------------------------------
Confidence 99999876643 45666664421
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEe-eCce-EEEEE
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIF-DGEN-IILEL 732 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~-~~~~-~~L~i 732 (803)
..|.+... ....|+.+.|.|.+. |.|.|.|.|+++|.++.......... ++.. ....+
T Consensus 109 ---------------~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~ 169 (201)
T 1dr9_A 109 ---------------PTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSK 169 (201)
T ss_dssp ---------------CCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEE
T ss_pred ---------------CCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEE
Confidence 12333221 124588999999995 99999999999999987543322222 2232 22234
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
..+ ..+|.|.|+|.|.|..|..++.+.+
T Consensus 170 ~~v-~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 170 LDF-NMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEE-ETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEE-EecCCCEEEEEEecCcceeeeEEec
Confidence 455 5689999999999999998876654
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=169.79 Aligned_cols=174 Identities=11% Similarity=0.067 Sum_probs=122.2
Q ss_pred ceEEeecceeEEEEEEcCcC---CCeeEEeeCC--eee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP---RPEISWMKNG--AEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p---~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y 579 (803)
...+.+|+.+.|.|.+.+.| .+.+.|+|++ ..+ ....++.+....+...|.|.+++.+|+|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (212)
T 1q0x_L 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY 88 (212)
T ss_dssp EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEE
Confidence 57789999999999999987 4789999863 222 112455555555667999999999999999
Q ss_pred EEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceee
Q psy2776 580 TVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658 (803)
Q Consensus 580 ~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~ 658 (803)
.|.|.|..+.. .....|.|...+
T Consensus 89 ~C~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------------- 112 (212)
T 1q0x_L 89 FCALWSNNKLVFGGGTKLTVLGQP-------------------------------------------------------- 112 (212)
T ss_dssp EEEEECSSCEEECCCEEEEECCSC--------------------------------------------------------
T ss_pred EEEEecCchhhcCCCeEEEEecCC--------------------------------------------------------
Confidence 99999986532 122344442210
Q ss_pred eeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCe---EEEeeC---ceEEE
Q psy2776 659 ALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKK---REIFDG---ENIIL 730 (803)
Q Consensus 659 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~---~~~~~~---~~~~L 730 (803)
..+|.+...+....+..|+.++|.|.+.|.+++ .|.|+++|.++..+... ....++ ..+.|
T Consensus 113 -----------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L 181 (212)
T 1q0x_L 113 -----------KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYL 181 (212)
T ss_dssp -----------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEE
T ss_pred -----------CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEE
Confidence 125666554444445579999999999986443 89999999998655221 111112 23568
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
.|..+ ..+|+|.|+|.|.|..+....+
T Consensus 182 ~i~~~-~~~d~g~Y~C~a~n~~~~~~~~ 208 (212)
T 1q0x_L 182 TLTAR-AWERHSSYSCQVTHEGHSSNKT 208 (212)
T ss_dssp EEEHH-HHTTCCEEEEEEEETTEEEEEE
T ss_pred EEcHH-HccCCCcEEEEEEeCCcceeee
Confidence 99998 6789999999999987764443
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=168.78 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=130.2
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
...+.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|
T Consensus 16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~ 89 (218)
T 3k0w_A 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFNAVHVKDAGFYVCRVNNNFT 89 (218)
T ss_dssp ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC------CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC------CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence 45678888889999999999999999999999999999999887643 346799999999999999999999987
Q ss_pred Ce-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeecc
Q psy2776 222 TA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFES 300 (803)
Q Consensus 222 ~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (803)
.. ...+.|.|...+........ .
T Consensus 90 ~~~s~~~~l~V~~~~~~~~~~~~--------------------------------------------------------~ 113 (218)
T 3k0w_A 90 FEFSQWSQLDVCDIPESFQRSVD--------------------------------------------------------G 113 (218)
T ss_dssp CEECCCEEEEEECCCGGGCTTCC--------------------------------------------------------S
T ss_pred CceeeEEEEEEEccCcccccccc--------------------------------------------------------c
Confidence 55 44577777765321100000 0
Q ss_pred CCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 301 KSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
.....+. +...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.....
T Consensus 114 ~~~~~p~-~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------------------------- 164 (218)
T 3k0w_A 114 VSESKLQ-ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------------------------- 164 (218)
T ss_dssp BCCSSCE-EEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS----------------------------
T ss_pred ccCCCce-EEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC----------------------------
Confidence 0000111 1122344556779999999999 899999999999988865321
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
..|.|.++..+|+|.|+|.|.|..|....
T Consensus 165 -------------------------------------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s 193 (218)
T 3k0w_A 165 -------------------------------------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDS 193 (218)
T ss_dssp -------------------------------------------SEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred -------------------------------------------CEEEEeecChhcCEEEEEEEEcCCCCcee
Confidence 13778888899999999999998877554
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-19 Score=173.67 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=125.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+. |.+.+.|+|+ +..+. ...++.+.......+|.|.++..+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 46788999999999998 8889999994 32221 22456555556678999999999999999999
Q ss_pred EEcCCC--CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 583 ATNAAG--STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 583 a~n~~g--~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
|.|..| .....+.|.|...
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~----------------------------------------------------------- 107 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQ----------------------------------------------------------- 107 (211)
T ss_dssp EEETTTEEEECCCEEEEECCS-----------------------------------------------------------
T ss_pred EecCCCceeECCCceEEEeCC-----------------------------------------------------------
Confidence 999887 3444456666421
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCCeeccCCCCe---EEEeeCc---eEEEEE
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNNKPLLSSPKK---REIFDGE---NIILEL 732 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~~~l~~~~~~---~~~~~~~---~~~L~i 732 (803)
...+|.+...+....+.+|+.+.|.|.+.|.+ .+.+.|+++|.++..+... ....++. ...|.|
T Consensus 108 --------~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i 179 (211)
T 3tv3_L 108 --------PKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSL 179 (211)
T ss_dssp --------CCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEE
T ss_pred --------CCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEE
Confidence 11266666655555555799999999999863 4789999999988642111 1111111 256889
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
..+ ..+|+|.|+|.|.|..|....++
T Consensus 180 ~~~-~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 180 TPE-QWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp CHH-HHHHSSCEEEEEEETTEEEEEEE
T ss_pred cHH-HhCCCCeEEEEEEECCCCEEeec
Confidence 988 57899999999999998766554
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=166.09 Aligned_cols=160 Identities=13% Similarity=0.181 Sum_probs=114.7
Q ss_pred cceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeec---CC---------------CcEEEEecCCeEEEEEeeeccCcC
Q psy2776 516 KSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEIT---DS---------------KACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~---~~---------------~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
....+.+|+++.|.|.+.+ .+.+.+.|+++|..+. .+ .++.+ . .+..|.|.+++.+|+
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~--~-~~~sL~I~~v~~~D~ 82 (193)
T 2if7_A 6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF--T-QSYSLQLSNLKMEDT 82 (193)
T ss_dssp EEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEE--C-TTCCEEECSCCGGGC
T ss_pred eEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEE--C-CCeEEEECCCCcccC
Confidence 3577889999999999876 4457999999986542 11 12222 2 357899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
|.|+|.|.|..|.....+.|.|..++
T Consensus 83 G~Y~C~~~~~~~~~~~~~~L~V~~~~------------------------------------------------------ 108 (193)
T 2if7_A 83 GSYRAQISTKTSAKLSSYTLRILRQL------------------------------------------------------ 108 (193)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCC------------------------------------------------------
T ss_pred ceEEEEEEecCCCeEEEEEEEEEccC------------------------------------------------------
Confidence 99999999998887777888885532
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCC-eEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEec
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 734 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~ 734 (803)
..|.+.... ..+..|. .++|.|.+.|. |.|.+.|+++|..+..+ . .|.|..
T Consensus 109 --------------~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~---------~--~l~i~~ 161 (193)
T 2if7_A 109 --------------RNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ---------P--NLTVSW 161 (193)
T ss_dssp --------------EEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS---------S--EEEEEE
T ss_pred --------------CCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC---------C--eEEEEe
Confidence 023333222 1233465 89999999985 57899999999876332 2 355654
Q ss_pred CCCCCCceeEEEEEEccCcceeeeE
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
.....|+|.|+|.|.|.+|..+..+
T Consensus 162 ~~~~~d~G~Y~C~a~N~~g~~s~~~ 186 (193)
T 2if7_A 162 DPRISSEQDYTCIAENAVSNLSFSV 186 (193)
T ss_dssp CTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred ccCcCCCCcEEEEEECCCCcccccc
Confidence 4233489999999999999987654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=186.81 Aligned_cols=174 Identities=17% Similarity=0.242 Sum_probs=135.8
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|++++..+.......
T Consensus 165 ~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~-------------------------------------- 206 (347)
T 2ifg_A 165 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS-------------------------------------- 206 (347)
T ss_dssp CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--------------------------------------
T ss_pred CCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--------------------------------------
Confidence 344566789999999999 89999999999986654321100
Q ss_pred eecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 392 LDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.......|.|.+++.+|+| .|+|.|.|..|....
T Consensus 207 --------------------------~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~------------------- 241 (347)
T 2ifg_A 207 --------------------------GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV------------------- 241 (347)
T ss_dssp --------------------------CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCE-------------------
T ss_pred --------------------------eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEE-------------------
Confidence 0123346899999999999 999999999887755
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|.+ . ...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.
T Consensus 242 -----------------------~~~l~V~~~P~i---~-------~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~ 288 (347)
T 2ifg_A 242 -----------------------SVQVNVSFPASV---Q-------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLN 288 (347)
T ss_dssp -----------------------EECCCCBEEEEE---E-------ECCCEESSSEEEEEEEEEESCCEEEEEETTEECC
T ss_pred -----------------------EEEEEEcCCCee---e-------eccCccCceEEEEEEeeecCCCcEEEEeCCEECC
Confidence 556666666653 0 1234679999999999999999999999999998
Q ss_pred CCCcEEEEecC-------CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 551 DSKACRIFIDE-------ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 551 ~~~~~~~~~~~-------~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+......... ..++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 66554433222 35789999999999999999999999999999999987754
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=165.82 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=65.0
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++.. .......|.|.+++.+|+|.|+|.+.|..|
T Consensus 6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 76 (184)
T 2gi7_A 6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSL 76 (184)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC-------CEESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc-------ccCcccEEEECcCChhhCceEEEEEEcCCC
Confidence 356777777664 7889999999999988 7889999999865 123456899999999999999999999876
Q ss_pred Cee--eEEEEEEee
Q psy2776 222 TAE--TSCTLLVQG 233 (803)
Q Consensus 222 ~~~--~s~~l~V~~ 233 (803)
... ..+.|.|..
T Consensus 77 ~~~~s~~~~l~V~~ 90 (184)
T 2gi7_A 77 WSLPSDQLELVATG 90 (184)
T ss_dssp EBCCCCCEEEEEES
T ss_pred ccCCCCCEEEEecC
Confidence 433 345566543
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-19 Score=173.02 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=110.3
Q ss_pred EeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.+|+++.|.|.+ |.+.+.|+|+|..+... ...+.+|.|.+++.+|+|.|+|.+.+... ..+.|.|.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~ 81 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYR 81 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEE
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEE
Confidence 3579999999998 78899999999887642 12356899999999999999999765322 22444443
Q ss_pred eeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecc
Q psy2776 600 GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679 (803)
Q Consensus 600 ~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~ 679 (803)
..+ .|.+......-......... . ........++.+...+
T Consensus 82 ~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~p 121 (204)
T 1sy6_A 82 MGS-------------------------------------ADDAKKDAAKKDDAKKDDAK-K--DGSDGNEEMGGITQTP 121 (204)
T ss_dssp C----------------------------------------------------------------------------CCC
T ss_pred Eec-------------------------------------cccccccccccccccccccc-c--ccccccccccceecCC
Confidence 100 00000000000000000000 0 0000000022222222
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC-CeEEEeeCceEEEEEecC-CCCCCceeEEEEEEccCcce-e
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-KKREIFDGENIILELKEA-DSETDAGDYKVVATNELGSA-T 756 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~L~i~~v-~~~~D~G~Y~C~a~N~~G~~-~ 756 (803)
. ....+|++++|.|. |.|.|.+.|+|+|..+.... ...+...+ ..|.|.++ . .+|+|.|+|.|.|..|.. +
T Consensus 122 ~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~~L~I~~v~~-~~D~G~Y~C~A~N~~g~~~s 195 (204)
T 1sy6_A 122 Y-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSE-LEQSGYYVCYPRGSKPEDAN 195 (204)
T ss_dssp C-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEET--TEEEETTCCH-HHHCEEEEEEETTSCGGGSS
T ss_pred c-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCC--CEEEEeeCCc-cccCEEEEEEeccCCCCcee
Confidence 1 12238999999998 78999999999999886542 22222223 36999988 5 689999999999999974 5
Q ss_pred eeEEEEEE
Q psy2776 757 HGARVTVD 764 (803)
Q Consensus 757 ~~~~l~V~ 764 (803)
..+.|.|+
T Consensus 196 ~~l~l~~~ 203 (204)
T 1sy6_A 196 FYLYLRAR 203 (204)
T ss_dssp CEEEEEEC
T ss_pred EEEEEEEe
Confidence 66666554
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-18 Score=171.60 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=128.4
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee-------------cCCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI-------------TDSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i-------------~~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|.+.+. +.+.+.|+|.. . .+ ....++.+..+ ....+|.|.+++.+
T Consensus 17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 96 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE 96 (257)
T ss_dssp CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence 4568899999999999984 47899999842 1 11 01134555432 34568999999999
Q ss_pred cCeEEEEEEEcCCCC----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 575 DTSTYTVTATNAAGS----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
|+|.|.|.|.|..+. ......|.|...+. .+
T Consensus 97 DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------~~-- 131 (257)
T 3gkz_A 97 DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGG-------------------------------------------SG-- 131 (257)
T ss_dssp GCEEEEEEEECTTCTTCEEECCCEEEEEC---------------------------------------------------
T ss_pred hCEEEEEEEecCCCcceeEEcCCEEEeecCchh-------------------------------------------hc--
Confidence 999999999997322 22334566644210 00
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeC--Ceecc------------C
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRN--NKPLL------------S 715 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~--~~~l~------------~ 715 (803)
.........+|.+...+....+.+|++++|.|.+.+.|.+ .+.|+|+ +..+. .
T Consensus 132 ------------~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 199 (257)
T 3gkz_A 132 ------------GGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGV 199 (257)
T ss_dssp ---------------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTC
T ss_pred ------------ccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCc
Confidence 0000011124566666777889999999999999998888 9999984 22221 1
Q ss_pred CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEeecc
Q psy2776 716 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKV 768 (803)
Q Consensus 716 ~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~ 768 (803)
..++.....+...+|.|.++ +.+|+|.|.|.|.|..... ..-..|.|...+.
T Consensus 200 ~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~ 252 (257)
T 3gkz_A 200 PARFSGSGSGTSYSLTISSM-EAEDAASYFCHQWSSFPFTFGSGTKLEIKRAPH 252 (257)
T ss_dssp CTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEECCC--
T ss_pred CCCEEEecCCCEEEEEECCC-ChHHCEEEEEEEccCCceEEcCCEEEEEEeCCC
Confidence 35666666667788999999 7999999999999954333 2233466653333
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=166.17 Aligned_cols=165 Identities=12% Similarity=0.211 Sum_probs=116.7
Q ss_pred ccccccccCCceeeeccccceeEEEEe-cCCcee-eEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 304 PAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ-VKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~-i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
+.+.+... |....+.+|+.+.|.|.+ +.|.+. +.|+|+|..+...
T Consensus 6 ~~p~i~~~-p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-------------------------------- 52 (175)
T 1fnl_A 6 PKAVVFLE-PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------------------------------- 52 (175)
T ss_dssp CCCEEEEE-SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS--------------------------------
T ss_pred CCCEEEEc-CCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC--------------------------------
Confidence 44444443 333456679999999999 677665 7899998776531
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
...|.|.+++.+|+|.|+|.+.|..+..
T Consensus 53 ----------------------------------------~~~L~i~~~~~~d~G~Y~C~~~n~~~s~------------ 80 (175)
T 1fnl_A 53 ----------------------------------------ASSYFIDAATVNDSGEYRCQTNLSTLSD------------ 80 (175)
T ss_dssp ----------------------------------------CSEEEESSCCGGGCEEEEEECSSSCCCC------------
T ss_pred ----------------------------------------ceEEEEeCCCcccCEEEEEEeeCCcccc------------
Confidence 1247888889999999999998844321
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-ee
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EI 540 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v 540 (803)
.+.|.|..+|.. ... ....+.+|+.+.|.|.+.+.|++ .+
T Consensus 81 --------------------------------~~~l~V~~~~~~-----~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~ 121 (175)
T 1fnl_A 81 --------------------------------PVQLEVHIGWLL-----LQA--PRWVFKEEDPIHLRCHSWKNTALHKV 121 (175)
T ss_dssp --------------------------------CEEEEEECSSEE-----EEC--SCSEEETTCCEEEEEEECTTCCCEEE
T ss_pred --------------------------------cEEEEEeCCCce-----eeC--CCceecCCCCEEEEEEcCCCCCceEE
Confidence 223333322211 111 13557889999999999988764 99
Q ss_pred EEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEee
Q psy2776 541 SWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVLG 600 (803)
Q Consensus 541 ~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~~ 600 (803)
.|+|+|..+... .....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 122 ~W~k~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 122 TYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEECCeEccCC--------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 999999877421 12468999999999999999999997554 56677777754
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=167.12 Aligned_cols=174 Identities=13% Similarity=0.129 Sum_probs=113.8
Q ss_pred eeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecC
Q psy2776 317 LVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFG 395 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~ 395 (803)
.+.+|++++|.|.+ +.|. .+.|+|+|..+.......
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~------------------------------------------ 51 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP------------------------------------------ 51 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC------------------------------------------
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc------------------------------------------
Confidence 66789999999999 5554 799999988774211100
Q ss_pred CCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc-eeeeeecccCCCCceeEEeeeccCcccC
Q psy2776 396 SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA-GTAETRTMWPGLPLSIVVSLRKADTRVK 474 (803)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~ 474 (803)
........|.|.+++.+|+|.|+|.|.|.. |....+.
T Consensus 52 ---------------------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~--------------------- 89 (198)
T 1ugn_A 52 ---------------------QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSD--------------------- 89 (198)
T ss_dssp ---------------------HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCC---------------------
T ss_pred ---------------------ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCc---------------------
Confidence 001123358888999999999999999877 5333221
Q ss_pred CchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc
Q psy2776 475 PPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554 (803)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~ 554 (803)
.+.|.|..++..|.+.. . ....+.+|+.+.|.|.+.+. .+.+.|+|+|..+.....
T Consensus 90 -------------------~~~l~V~~~~~~p~i~~--~--~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~ 145 (198)
T 1ugn_A 90 -------------------PLELVVTGAYIKPTLSA--Q--PSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCL 145 (198)
T ss_dssp -------------------CEEEEEECSSCCCEEEE--E--SCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEE
T ss_pred -------------------cEEEEEcccccCCcccc--C--CccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccc
Confidence 34444444332222221 1 12568899999999999998 789999999987754321
Q ss_pred -EEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCC-----eEEEEEEEEe
Q psy2776 555 -CRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGS-----TSLDLSLQVL 599 (803)
Q Consensus 555 -~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-----~s~s~~l~V~ 599 (803)
..... ......|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 146 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 146 NSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred cccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 11111 223589999999999999999999998662 2556666664
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-19 Score=175.60 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=122.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|+ |..+. ...++.+........|.|.+++.+|+|.|+|.
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 87 (212)
T 1nfd_E 8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL 87 (212)
T ss_dssp EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred eEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEE
Confidence 57789999999999999988889999985 33321 13556665555678999999999999999999
Q ss_pred EEcCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeee
Q psy2776 583 ATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659 (803)
Q Consensus 583 a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~ 659 (803)
|.|..+.. .....|.|...+
T Consensus 88 ~~n~~~~~~~~~~~~~l~V~~~~--------------------------------------------------------- 110 (212)
T 1nfd_E 88 SSYGDNNDLVFGSGTQLTVLRGP--------------------------------------------------------- 110 (212)
T ss_dssp EEETTTTEEEECCCEEEEEECCC---------------------------------------------------------
T ss_pred EEcccCcccccCCceEEEEccCC---------------------------------------------------------
Confidence 99732221 122334442211
Q ss_pred eeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeE-EEeeC----ceEEEEE
Q psy2776 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR-EIFDG----ENIILEL 732 (803)
Q Consensus 660 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~-~~~~~----~~~~L~i 732 (803)
..+|.+...+....+.+|+.++|.|.+.|. |+ +.+.|+++|.++..+.... ...++ ....|.|
T Consensus 111 ----------~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i 180 (212)
T 1nfd_E 111 ----------KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSL 180 (212)
T ss_dssp ----------CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCE
T ss_pred ----------CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEE
Confidence 125555554444445679999999999988 55 7999999999986543211 01111 1245899
Q ss_pred ecCCCCCCceeEEEEEEccCcceee
Q psy2776 733 KEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
.++ ..+|+|.|+|.|.|..+....
T Consensus 181 ~~~-~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 181 TAD-QWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp EHH-HHHTCSCEEEEEECTTTTCCC
T ss_pred chh-hcCCCCeEEEEEEeCCceEEE
Confidence 999 689999999999999887544
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=173.73 Aligned_cols=191 Identities=13% Similarity=0.204 Sum_probs=131.5
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|++ ..+. ...++.+..+ .....|.|.+++.
T Consensus 35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 114 (282)
T 1qok_A 35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS 114 (282)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence 56789999999999999875 5889999964 1110 1245555442 3457999999999
Q ss_pred CcCeEEEEEEEcCCCC---e--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 574 ADTSTYTVTATNAAGS---T--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~---~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+|+|.|.|.|.|..|. . ...+.|.|...+... +
T Consensus 115 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~------------------------------------------~ 152 (282)
T 1qok_A 115 EDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGS------------------------------------------G 152 (282)
T ss_dssp GGCEEEEEEEECSSSSCCCEEECCCEEEEEEC------------------------------------------------
T ss_pred hhCEEEEEEeccCCCccceeeeCCCEEEEEecCCccc------------------------------------------C
Confidence 9999999999998762 1 123456665432000 0
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeecc------------
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL------------ 714 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l~------------ 714 (803)
.........++.+...+....+.+|++++|.|.+.+.| +.+.|+| +|..+.
T Consensus 153 --------------~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~ 217 (282)
T 1qok_A 153 --------------GGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASG 217 (282)
T ss_dssp -----------------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTT
T ss_pred --------------CccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCc
Confidence 00000001255666667778899999999999999999 8999999 555431
Q ss_pred CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEe
Q psy2776 715 SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765 (803)
Q Consensus 715 ~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 765 (803)
...++....++...+|.|.++ +.+|+|.|+|.|.|..+.. .....|.|..
T Consensus 218 ~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 218 VPARFSGSGSGTSYSLTISRM-EAEDAATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp CCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred ccCCeEEecCCCEEEEEEccC-ChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence 245676666667789999999 7999999999999865432 3456677753
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-18 Score=169.52 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=123.1
Q ss_pred ceEEeecceeEEEEEEcCcC----CCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP----RPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|++ .. +. ...++.+.......+|.|.+++.+|+|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 89 (240)
T 1moe_A 10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT 89 (240)
T ss_dssp EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEE
Confidence 57789999999999999998 7899999862 21 10 1245666555566799999999999999
Q ss_pred EEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 579 YTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 579 Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|+|.|.|..+. ....+.|.|...+
T Consensus 90 Y~C~~~n~~~~~~~~~~~l~V~~~~------------------------------------------------------- 114 (240)
T 1moe_A 90 YYCQQTNEDPYTFGGGTKLEIKGGG------------------------------------------------------- 114 (240)
T ss_dssp EEEEECSSSSCCBCCCEEEEECCCS-------------------------------------------------------
T ss_pred EEEEEccCCceeecCCEEEEEecCC-------------------------------------------------------
Confidence 99999998654 3344566664421
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeC--Ceecc-----------------CC
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRN--NKPLL-----------------SS 716 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--~~~l~-----------------~~ 716 (803)
....++.++..+....+.+|++++|.|.+.|.|. +.+.|+|+ +..+. ..
T Consensus 115 ----------~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~ 184 (240)
T 1moe_A 115 ----------SGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQ 184 (240)
T ss_dssp ----------CCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGT
T ss_pred ----------CCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCcccc
Confidence 0001334455566678999999999999999874 58999996 22220 13
Q ss_pred CCeEEEee--CceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 717 PKKREIFD--GENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 717 ~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.++.+..+ ....+|.|.++ +.+|+|.|+|.|.+.
T Consensus 185 ~r~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 185 GKATITADTSSNTAYLQLTSL-TSEDTAVYYCAPFGY 220 (240)
T ss_dssp TTEEEEEETTTTEEEEEECSC-CGGGCEEEEEEECST
T ss_pred ccEEEEEcccCCEEEEEECcC-CHHHCEEEEEEEEec
Confidence 45555543 45678999999 799999999999953
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-18 Score=172.11 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=120.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe-----ee---------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA-----EI---------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-----~i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|+.. .+ ....++.+.......+|.|.++..+|+|.|.|.
T Consensus 13 ~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 92 (250)
T 3esu_F 13 SLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQ 92 (250)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEE
Confidence 5678899999999999999999999998531 11 112455555555667999999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|...+. ....+.+.....
T Consensus 93 ~~n~~~~~~~~~~~l~V~~~~~---------------------------------~~~~~~~~~~~~------------- 126 (250)
T 3esu_F 93 QGNTLPWTFGGGTKLEIRRGGG---------------------------------GSGGGGSGGGGS------------- 126 (250)
T ss_dssp ECSSSSCEECCCEEEEEC--------------------------------------------------------------
T ss_pred EeeCCCceECCCEEEEEECCCC---------------------------------cccccccccccc-------------
Confidence 99976542 2334566644210 000000000000
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceecc-----------------CCCCeE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPLL-----------------SSPKKR 720 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l~-----------------~~~~~~ 720 (803)
....++.++..+....+.+|++++|.|.+.|.| .+.+.|+++ +..+. ...++.
T Consensus 127 ------~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 200 (250)
T 3esu_F 127 ------GGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKAT 200 (250)
T ss_dssp --------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEE
T ss_pred ------cCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEE
Confidence 000133344455567789999999999999877 789999997 43321 124565
Q ss_pred EEee--CceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 721 EIFD--GENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 721 ~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+..+ ....+|.|.++ +.+|+|.|.|.|.|
T Consensus 201 ~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 201 LTADKSSSTAYMQLSSL-TSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEGGGTEEEEEECSC-CGGGCEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCC-CcccCEEEEEEEec
Confidence 5544 45678999999 79999999999998
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=170.75 Aligned_cols=193 Identities=11% Similarity=0.132 Sum_probs=131.6
Q ss_pred cccceEEeecceeEEEEEEcCc--CCCeeEEeeCC--eeec-----------------CCCcEEEEe--cCCeEEEEEee
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AEIT-----------------DSKACRIFI--DEETSTIAIYS 570 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~i~-----------------~~~~~~~~~--~~~~~~L~i~~ 570 (803)
......+.+|++++|.|.+.+. +.+.+.|+|.. ..+. ...++.+.. .....+|.|.+
T Consensus 12 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 91 (256)
T 3juy_B 12 QSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 91 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECC
Confidence 3356889999999999999883 67889999742 1110 013555552 23457899999
Q ss_pred eccCcCeEEEEEEEcC------------CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeE
Q psy2776 571 VVRADTSTYTVTATNA------------AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~------------~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (803)
+..+|+|.|.|.|.|. .+.......|.|...+..
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~---------------------------------- 137 (256)
T 3juy_B 92 LRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGG---------------------------------- 137 (256)
T ss_dssp CCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC------------------------------------
T ss_pred CCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccc----------------------------------
Confidence 9999999999999986 222334455666442200
Q ss_pred EEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-CceEEeeC--Ceecc-
Q psy2776 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRN--NKPLL- 714 (803)
Q Consensus 639 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~--~~~l~- 714 (803)
.. .........+|.+...+....+.+|++++|.|.+.+.|. +.+.|+|+ +..+.
T Consensus 138 --------~~--------------~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~ 195 (256)
T 3juy_B 138 --------SG--------------GGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRL 195 (256)
T ss_dssp ------------------------------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEE
T ss_pred --------cc--------------ccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEE
Confidence 00 000000011556777778889999999999999999887 89999983 22221
Q ss_pred -----------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEE
Q psy2776 715 -----------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763 (803)
Q Consensus 715 -----------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 763 (803)
...++.+..++...+|.|.++ +.+|+|.|.|.|.|..+.. .....|.|
T Consensus 196 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~g~gt~l~V 255 (256)
T 3juy_B 196 VIHGVSNRASGISDRFSGSGSGTDFTLTITRV-EPEDFALYYCQVYGASSYTFGQGTKLER 255 (256)
T ss_dssp EEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred EEEecCccCCccCCcEEEEccCCEEEEEECCC-CHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence 345677767777889999999 7999999999999965433 23344444
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=171.79 Aligned_cols=176 Identities=12% Similarity=0.178 Sum_probs=115.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-----eEEeeCCeeecCC--------CcE-------EEE---ecCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-----ISWMKNGAEITDS--------KAC-------RIF---IDEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-----v~W~~~g~~i~~~--------~~~-------~~~---~~~~~~~L~i~~v~~ 573 (803)
.+.+.+|+++.|.|.+.|.|.+. +.|+|++...... ... .+. ...+...|.|.+++.
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~ 91 (248)
T 3pv7_A 12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL 91 (248)
T ss_dssp EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCG
T ss_pred CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCH
Confidence 46788999999999999988876 9999974322110 000 000 011234699999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.|..+.....+.|.|..+
T Consensus 92 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~~---------------------------------------------------- 119 (248)
T 3pv7_A 92 EEAGEYRCEVVVTPLKAQGTVQLEVVAS---------------------------------------------------- 119 (248)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEBC----------------------------------------------------
T ss_pred HHCeEEEEEEEeCCccceeEEEEEEecC----------------------------------------------------
Confidence 9999999999999888888888888663
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCC-------eEEEe-
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPK-------KREIF- 723 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~-------~~~~~- 723 (803)
|.+...+. ..+..|+.+.|.|.+.| .|.| .+.|+++|.++..... .....
T Consensus 120 -------------------P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 179 (248)
T 3pv7_A 120 -------------------PASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKN 179 (248)
T ss_dssp -------------------CEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEEC
T ss_pred -------------------CceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEEC
Confidence 33333322 33446788889999999 7998 9999999975432210 01111
Q ss_pred -eCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 724 -DGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 724 -~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
++. ...|.|... ..+|.|.|+|.|.|..+.......+.+.|
T Consensus 180 ~~~~~~~~s~L~i~~~-~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 180 MDGTFNVTSCLKLNSS-QEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp TTSCEEEEEEEECC---CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCCCEEEEEEEEEcCc-cccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 111 356888888 68899999999999999865555555444
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-19 Score=167.26 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=87.0
Q ss_pred EEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCC
Q psy2776 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504 (803)
Q Consensus 425 L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~ 504 (803)
|.|.+++.+|+|.|+|.|.|..|....+. .+.|.|..++.
T Consensus 63 L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~----------------------------------------~~~l~V~~~~~ 102 (176)
T 1hng_A 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNK----------------------------------------ALDLRILEMVS 102 (176)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCCEEEEE----------------------------------------EEEEEEECCCC
T ss_pred EEEcccccccCEEEEEEEEeCCCCEEEEE----------------------------------------EEEEEEeCCCC
Confidence 99999999999999999999888762211 44555555544
Q ss_pred CccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 505 ~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
.|.+. ..+..+.|.|.+.|.|+|.+.|+|+|..+..+.+ +.|.++..+|+|.|+|.|.
T Consensus 103 ~p~i~-----------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~ 160 (176)
T 1hng_A 103 KPMIY-----------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAV 160 (176)
T ss_dssp CCEEE-----------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEE
T ss_pred CCEEE-----------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEE
Confidence 33221 2345699999999999999999999988765432 4555888999999999999
Q ss_pred cCCCCeEEEEEEEE
Q psy2776 585 NAAGSTSLDLSLQV 598 (803)
Q Consensus 585 n~~g~~s~s~~l~V 598 (803)
|..|..+....|.+
T Consensus 161 N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 161 NRVSQESEMEVVNC 174 (176)
T ss_dssp ETTEEEEEEECCCC
T ss_pred ecCCCceecccccC
Confidence 99999888877655
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=172.13 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=119.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCe---eEEeeCCeeecC----------------CCcEEEE-------ecCCeEEEEEee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE---ISWMKNGAEITD----------------SKACRIF-------IDEETSTIAIYS 570 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~---v~W~~~g~~i~~----------------~~~~~~~-------~~~~~~~L~i~~ 570 (803)
...+.+|++++|.|.+.+.|.+. +.|+|++..+.. ..+.... ......+|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 36678899999999999887764 789998654321 0111110 112346799999
Q ss_pred eccCcCeEEEEEEEcCCCCeEEEE-EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 571 VVRADTSTYTVTATNAAGSTSLDL-SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~s~s~-~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
++.+|+|.|+|.|.|..|...... .+.+..
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 120 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIA------------------------------------------------- 120 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------------------------------------------------
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeec-------------------------------------------------
Confidence 999999999999999877654433 333322
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCc--
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGE-- 726 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~-- 726 (803)
+|.+...+.......++.+.+.|.+ .+.|++.+.|++++..+..........++.
T Consensus 121 ----------------------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
T 4fmk_A 121 ----------------------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVT 178 (225)
T ss_dssp ----------------------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEE
T ss_pred ----------------------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEE
Confidence 2333333344455667777777766 456888999999876654332222112222
Q ss_pred -eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 727 -NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 727 -~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+.|.|.++ ..+|+|.|+|+|+|..|.....+.++|.|
T Consensus 179 ~~s~L~i~~~-~~~d~g~YtC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 179 IISRYSLVPV-GRADGVKVTCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp EEEEEEECCC-GGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred EEEEEEEeeC-CHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence 346999999 78999999999999999887766666544
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=169.89 Aligned_cols=193 Identities=10% Similarity=0.153 Sum_probs=131.8
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. ..+. ...++.+..+ .....|.|.++..
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 35688999999999999876 6789998742 1110 1234554432 3457899999999
Q ss_pred CcCeEEEEEEEcC----CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 574 ADTSTYTVTATNA----AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 574 ~dsG~Y~C~a~n~----~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|+|.|.|.|.|. .+.......|.|...+ +.
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~---------------------------------------------~~ 125 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGG---------------------------------------------GG 125 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC-------------------------------------------------
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCC---------------------------------------------cc
Confidence 9999999999987 2333344566665421 00
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc------------C
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------S 715 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~------------~ 715 (803)
... +. .......+|.+...+....+.+|++++|.|.+.+.|.+.+.|+|+ +..+. .
T Consensus 126 ~~~-----~~-----~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 195 (256)
T 3umt_A 126 SGG-----GG-----SGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGV 195 (256)
T ss_dssp ---------------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTS
T ss_pred ccC-----cc-----cCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCcc
Confidence 000 00 000011156677777778899999999999999999999999994 22211 2
Q ss_pred CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEe
Q psy2776 716 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765 (803)
Q Consensus 716 ~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 765 (803)
..++.....+...+|.|.++ +.+|+|.|.|.|.|..+.. .....|.|+.
T Consensus 196 ~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 196 PKRFSGSRSGSDYSLTISSL-ESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp CTTEEEEEETTEEEEEECSC-CGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CCCEEEecCCCEEEEEECCC-ChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 35676666777889999999 7999999999999976544 3456677753
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=163.70 Aligned_cols=171 Identities=12% Similarity=0.094 Sum_probs=115.9
Q ss_pred eeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCC
Q psy2776 317 LVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGS 396 (803)
Q Consensus 317 ~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~ 396 (803)
.+.+|++++|.|.+..+.+.+.|+|+|..+..... .
T Consensus 14 ~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~------~-------------------------------------- 49 (188)
T 1oll_A 14 MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP------K-------------------------------------- 49 (188)
T ss_dssp EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC------S--------------------------------------
T ss_pred cCCCCCCEEEEEecCCCCCEEEEEECCCccccccc------c--------------------------------------
Confidence 56789999999999545678999999877642100 0
Q ss_pred CceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCc
Q psy2776 397 GGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPP 476 (803)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 476 (803)
.........|.|.+++.+|+|.|+|.+.|..+....+.
T Consensus 50 -------------------~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~----------------------- 87 (188)
T 1oll_A 50 -------------------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN----------------------- 87 (188)
T ss_dssp -------------------SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCC-----------------------
T ss_pred -------------------cCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCC-----------------------
Confidence 00011234688999999999999999988655433221
Q ss_pred hhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEE
Q psy2776 477 MKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR 556 (803)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~ 556 (803)
.+.|.|...+..|.+. ..+ ...+.+|+.++|.|.+.+ +++.+.|+|+|..+.. .
T Consensus 88 -----------------~~~l~V~~~~~~p~i~--~~p--~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~ 141 (188)
T 1oll_A 88 -----------------LLDLVVTEMYDTPTLS--VHP--GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----Q 141 (188)
T ss_dssp -----------------CEEEEEESCSCCCEEE--EES--CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----E
T ss_pred -----------------ceEEEecccCCCCeEE--ECC--CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----c
Confidence 2333343322122221 111 346789999999999876 5578999999976653 1
Q ss_pred EEecCCeEEEEEeeeccCcCeEEEEEEEcCC---CCeEEEEEEEEe
Q psy2776 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAA---GSTSLDLSLQVL 599 (803)
Q Consensus 557 ~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~---g~~s~s~~l~V~ 599 (803)
.........|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.
T Consensus 142 ~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 142 RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred ccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 2234467899999999999999999999875 234556667664
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-18 Score=170.19 Aligned_cols=171 Identities=9% Similarity=0.050 Sum_probs=123.6
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC--CeEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG--STSLDLSL 596 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g--~~s~s~~l 596 (803)
.+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.|..+ ..+..+.|
T Consensus 17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L 94 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 94 (242)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEE
Confidence 6889999999999875 4568999999987642100 001123467899999999999999999988643 23455666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|.+.. .+|.+.
T Consensus 95 ~V~~~~--------------------------------------------------------------------~~P~i~ 106 (242)
T 1p6f_A 95 VVTEMY--------------------------------------------------------------------DTPTLS 106 (242)
T ss_dssp EEECCS--------------------------------------------------------------------CCCEEE
T ss_pred Eeeccc--------------------------------------------------------------------CCCceE
Confidence 664311 145555
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC---c
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL---G 753 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~---G 753 (803)
..+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+.. ..........|.|.++ +.+|+|.|+|.|.|.. .
T Consensus 107 ~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v-~~~d~G~Y~C~a~n~~~~~s 179 (242)
T 1p6f_A 107 VHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPV-TTAHRGTYRCFGSYNNHAWS 179 (242)
T ss_dssp EES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEECSSEEEEEEEEC-CGGGCEEEEEEEEEETTEEC
T ss_pred ccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCCCceEEEEeCCC-ccccCEEEEEEEECCCCccc
Confidence 443 4568899999999998754 569999999987643 1223455678999999 7899999999999974 3
Q ss_pred ceeeeEEEEEEee
Q psy2776 754 SATHGARVTVDVE 766 (803)
Q Consensus 754 ~~~~~~~l~V~~~ 766 (803)
..+..+.|.|.+.
T Consensus 180 ~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 180 FPSEPVKLLVTGD 192 (242)
T ss_dssp CCCCCEEEEEEC-
T ss_pred CCCCCEEEEEecc
Confidence 4466778888653
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=164.67 Aligned_cols=164 Identities=13% Similarity=0.199 Sum_probs=118.0
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--------------------eEEEecCeeEEEEecCCCCcce
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--------------------NITYENNVARFTVVNCSESSEG 210 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--------------------~~~~~~~~~~L~i~~v~~~d~G 210 (803)
+....+.+|+.+.|.|...+.+.+.+.|++++...... +.... ....|.|.+++.+|+|
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-SNGSLLFQMITMKDMG 84 (208)
T ss_dssp EESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-TTSCEEECSCCGGGCE
T ss_pred CccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-cCCeEEEccccccCCe
Confidence 34467889999999999888888899999976432211 11111 1247999999999999
Q ss_pred EEEEEEEcCC-cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 211 RYTCKATNEA-GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 211 ~Y~C~a~n~~-g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|+|.+.|.. +.....+.|.|...+..+
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p--------------------------------------------------- 113 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPVTQP--------------------------------------------------- 113 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCCCCC---------------------------------------------------
T ss_pred EEEEEEEcccCceeEEEEEEEeccCCCCC---------------------------------------------------
Confidence 9999999985 445556667776442100
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeec
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~ 368 (803)
.+... +. . +.+|+.+.|.|.+ +.| +.+.|+++|..+..+.++.+..+
T Consensus 114 -----------------~i~~~-~~-~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~----------- 161 (208)
T 3r4d_A 114 -----------------FLQVT-NT-T-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQN----------- 161 (208)
T ss_dssp -----------------EEEES-CS-S-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETT-----------
T ss_pred -----------------EEecC-Cc-e-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCC-----------
Confidence 00000 11 1 5679999999999 554 89999999998876555433322
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
..+|.|.++..+|+|.|+|.|.|..|.
T Consensus 162 -----------------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 188 (208)
T 3r4d_A 162 -----------------------------------------------------NSILRIDPIKREDAGEYQCEISNPVSV 188 (208)
T ss_dssp -----------------------------------------------------TTEEEESSCCGGGCEEEEEEEECTTCC
T ss_pred -----------------------------------------------------CCEEEEeccCHHhCeEEEEEEecCCCc
Confidence 235888889999999999999999998
Q ss_pred eee
Q psy2776 449 AET 451 (803)
Q Consensus 449 ~~~ 451 (803)
..+
T Consensus 189 ~~s 191 (208)
T 3r4d_A 189 RRS 191 (208)
T ss_dssp EEC
T ss_pred ccC
Confidence 776
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=168.97 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=91.1
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|+|.|.|..|..... +.+.+
T Consensus 80 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~------------------------------------------v~~~~ 117 (226)
T 4f80_A 80 AGKAALRIHNVTASDSGKYLCYFQDGDFYEKAL------------------------------------------VELKV 117 (226)
T ss_dssp GTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE------------------------------------------EEEEE
T ss_pred CCeEEEEEeeCchHHCeeEEEEEECCCcEEEEE------------------------------------------EEEee
Confidence 456789999999999999999999988766551 22222
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcC
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADT 576 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~ds 576 (803)
..++..+. ....+.+|+.+.|.|.+.| .|.|.++|+|++..+.......+..+.++ ..+.+.++..+|+
T Consensus 118 ~~~~~~~~--------~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~ 189 (226)
T 4f80_A 118 AALGSDLH--------VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSG 189 (226)
T ss_dssp EBCCCCCE--------EEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC---
T ss_pred ccceeccc--------ceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcC
Confidence 22211111 2456788999999999988 59999999996644433322222222222 3455667889999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
|.|+|.|+|..|....++.|.|.++
T Consensus 190 G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 190 EGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp -CEEEEEEETTTTEEEEEEECCCTT
T ss_pred cEEEEEEEeCCCCeEEEEEEEECCC
Confidence 9999999999999999999988664
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=169.79 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=119.2
Q ss_pred eeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecC
Q psy2776 316 TLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFG 395 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~ 395 (803)
..+.+|++++|.|.+..+.+.+.|+|+|..+...... ..
T Consensus 18 ~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~~~-~~---------------------------------------- 56 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR-RL---------------------------------------- 56 (218)
T ss_dssp SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSE-EC----------------------------------------
T ss_pred CccCCCCCEEEEEEcCCCCCEEEEEECCCcccccccc-cC----------------------------------------
Confidence 3677899999999994478899999998766432110 00
Q ss_pred CCceeeeeeecCcceeeeeeeEEecCee--EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 396 SGGWWFESKYKDDSLIKGRNITYENNVA--RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
...+.. .|.|.+++.+|+|.|+|.+.|..|....+.
T Consensus 57 ----------------------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~-------------------- 94 (218)
T 1uct_A 57 ----------------------KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD-------------------- 94 (218)
T ss_dssp ----------------------C----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECC--------------------
T ss_pred ----------------------CCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecC--------------------
Confidence 001122 588999999999999999999765433321
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~ 553 (803)
.+.|.|...+..|.+. ..+ ...+.+|+.++|.|...+.|.+.+.|+|+|..+...
T Consensus 95 --------------------~~~l~V~~~~~~P~i~--~~p--~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~- 149 (218)
T 1uct_A 95 --------------------TLELVVTGLYGKPFLS--ADR--GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ- 149 (218)
T ss_dssp --------------------CEEEEEECSSCCCEEE--ESS--CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-
T ss_pred --------------------CEEEEEcCcccCCEEE--eCC--CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-
Confidence 2334443322222221 111 346789999999997777788999999999877542
Q ss_pred cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-----CeEEEEEEEEeeeE
Q psy2776 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-----STSLDLSLQVLGYI 602 (803)
Q Consensus 554 ~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-----~~s~s~~l~V~~~p 602 (803)
. ........|.|.+++.+|+|.|+|.|.|... ..+..+.|.|.+.+
T Consensus 150 -~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~ 200 (218)
T 1uct_A 150 -H--QSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200 (218)
T ss_dssp -E--EECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred -c--cCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence 1 1234568999999999999999999998642 34566788887643
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=168.56 Aligned_cols=177 Identities=10% Similarity=0.107 Sum_probs=121.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec----------------CCCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT----------------DSKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~----------------~~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|+.+.|.|.+.+.| .+.+.|+|++ .. +. ...++.+..+ .+...|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 45688999999999999875 6789999853 21 10 0135555433 34679999999
Q ss_pred ccCcCeEEEEEEEcCCC-----CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecC
Q psy2776 572 VRADTSTYTVTATNAAG-----STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g-----~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~ 646 (803)
+.+|+|.|.|.|.|..| .......|.|...
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~--------------------------------------------- 123 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAA--------------------------------------------- 123 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSS---------------------------------------------
T ss_pred CcccCeEEEEEEeccCCcccceEeCCceEEEeccC---------------------------------------------
Confidence 99999999999998764 2223345555331
Q ss_pred CCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEee
Q psy2776 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFD 724 (803)
Q Consensus 647 ~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~ 724 (803)
+..+|.+........+.+|+.++|.|.+.|. |.| .|.|+++|..+..........+
T Consensus 124 ----------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~ 181 (222)
T 1q9r_B 124 ----------------------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQS 181 (222)
T ss_dssp ----------------------CCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEET
T ss_pred ----------------------CCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccC
Confidence 1124555443333346689999999999996 888 9999999987642211111122
Q ss_pred Cc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 725 GE---NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 725 ~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
+. ...|.|.++ ..+| |.|+|.|.|..|.......|+
T Consensus 182 ~~~~~~s~L~i~~~-~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 182 DLYTLSSSVTVPSS-TWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp TEEEEEEEEEEETT-TTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred CcEEEEEEEEECch-hcCC-CeEEEEEEccCCCCcEEEecc
Confidence 21 246899988 6778 999999999999876555443
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=168.52 Aligned_cols=175 Identities=14% Similarity=0.158 Sum_probs=117.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceee---------------cCCCcEEEEe-cCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEI---------------TDSKACRIFI-DEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i---------------~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|++++|.|. .+.|.+.+.|+|+ +..+ ....++.+.. .....+|.|.+++.+|+|.
T Consensus 9 ~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~ 87 (238)
T 2p1y_A 9 NKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV 87 (238)
T ss_dssp EEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred ceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence 577899999999999 7788899999995 2111 0123455443 2345689999999999999
Q ss_pred EEEEEEcCCCCeE-----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 579 YTVTATNAAGSTS-----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 579 Y~C~a~n~~g~~s-----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
|.|.|.|..|... ....|.|...+.
T Consensus 88 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~-------------------------------------------------- 117 (238)
T 2p1y_A 88 YFCASGDLGQTNERLFFGHGTKLSVLGSAD-------------------------------------------------- 117 (238)
T ss_dssp EEEEEEC------CEEECCCEEEEEECCCH--------------------------------------------------
T ss_pred EEEEEEeCCCccccceeCCCeEEEEeccCC--------------------------------------------------
Confidence 9999999865311 223444433110
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCe--e---c---------cCCCCe
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--P---L---------LSSPKK 719 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~--~---l---------~~~~~~ 719 (803)
....+.....+.+...+....+.+|++++|.|.+.|.|.+.+.|+|++. . + ....++
T Consensus 118 ---------~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~ 188 (238)
T 2p1y_A 118 ---------DAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRF 188 (238)
T ss_dssp ---------HHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTE
T ss_pred ---------CCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCce
Confidence 0000000001245555667789999999999999999999999999641 1 1 123455
Q ss_pred EEEe--eCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 720 REIF--DGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 720 ~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.+.. .....+|.|.++ +.+|+|.|+|.|.|..
T Consensus 189 ~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 189 TIFFNKREKKLSLHIADS-QPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEETTTTEEEEEETTC-CGGGCEEEEEEEEETT
T ss_pred EEEecCCCCeEEEEEcCC-CHHHCEEEEEEEeeCC
Confidence 5442 344678999999 7999999999999984
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=163.46 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=63.4
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
.+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 75 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLNIVNAKFEDSGEYKCQHQQVNE 75 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-------CSSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC-------CceEEEEeccceecCEEEEEEcCCccc
Confidence 46677777888889999999999999988875 6999999987753 346899999999999999999998654
Q ss_pred CeeeEEEEEEe
Q psy2776 222 TAETSCTLLVQ 232 (803)
Q Consensus 222 ~~~~s~~l~V~ 232 (803)
. ..+.|.|.
T Consensus 76 s--~~~~l~V~ 84 (176)
T 1f2q_A 76 S--EPVYLEVF 84 (176)
T ss_dssp C--CCEEEEEE
T ss_pred c--ccEEEEEe
Confidence 3 34555555
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=167.82 Aligned_cols=181 Identities=14% Similarity=0.083 Sum_probs=122.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.+.+.|.+.+.|+|+. .. +. ...++.+.......+|.|.++..+|+|.|.|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (242)
T 2znx_A 10 TLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ 89 (242)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEe
Confidence 577899999999999999999999999853 11 11 13456655455667999999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|..++..
T Consensus 90 ~~n~~~~~~~~~~~L~V~~~~~~--------------------------------------------------------- 112 (242)
T 2znx_A 90 QSNSXPYTFGGGTKLEITGGGGS--------------------------------------------------------- 112 (242)
T ss_dssp ECSSSSCEECCCEEEEEC--------------------------------------------------------------
T ss_pred EecCCceEECCCEEEEEcCCCCC---------------------------------------------------------
Confidence 99985432 23456666553300
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceecc----------------CCCCeEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPLL----------------SSPKKRE 721 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l~----------------~~~~~~~ 721 (803)
.........++.++..+....+.+|++++|.|.+.|.| .+.+.|+++ +..+. ...++.+
T Consensus 113 -~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~ 191 (242)
T 2znx_A 113 -GGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISI 191 (242)
T ss_dssp -----------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEE
T ss_pred -CcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEE
Confidence 00000001123233334445689999999999999886 478999995 22221 1445655
Q ss_pred Eee--CceEEEEEecCCCCCCceeEEEEEEcc--Cccee
Q psy2776 722 IFD--GENIILELKEADSETDAGDYKVVATNE--LGSAT 756 (803)
Q Consensus 722 ~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~--~G~~~ 756 (803)
..+ +...+|.|.++ +.+|+|.|+|.|.|. +|..+
T Consensus 192 ~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 192 TRDTSKNQYYLDLNSV-TTEDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp EEETTTTEEEEEECSC-CGGGCEEEEEEETTSSCBCCCE
T ss_pred EecCCCCEEEEEECCC-CcCcCEEEEEeccCCcccCCCe
Confidence 543 35678999999 799999999999994 56654
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-18 Score=166.23 Aligned_cols=172 Identities=12% Similarity=0.113 Sum_probs=117.9
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceeec----------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEIT----------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~----------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|+ |..+. ...++.+..+ .+...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 88 (210)
T 3d9a_H 9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE 88 (210)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence 45788999999999999875 378999985 22211 1245555432 24569999999999
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcc
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~ 654 (803)
|+|.|.|.|.|.. .......|.|...
T Consensus 89 D~G~Y~C~~~~~~-~~~~~~~l~V~~~----------------------------------------------------- 114 (210)
T 3d9a_H 89 DTATYYCANWDGD-YWGQGTLVTVSAA----------------------------------------------------- 114 (210)
T ss_dssp GCEEEEEEETTSS-CBCCCEEEEECCC-----------------------------------------------------
T ss_pred cCEEEEEEEecCc-ccccceEEEeccC-----------------------------------------------------
Confidence 9999999999863 2222345555321
Q ss_pred ceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeC---ceEE
Q psy2776 655 TELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG---ENII 729 (803)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~---~~~~ 729 (803)
...+|.+...+....+.+|+.++|.|.+.|. |.| .+.|++++..+.......+..++ ....
T Consensus 115 --------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~ 180 (210)
T 3d9a_H 115 --------------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS 180 (210)
T ss_dssp --------------CCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEE
T ss_pred --------------CCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEE
Confidence 1124555544333456789999999999997 888 99999998865311111111112 2356
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
|.|..+ ..+| |.|+|.|.|..|.....
T Consensus 181 L~i~~~-~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 181 VTVPSS-TWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp EEEEGG-GTTT-SCCEEEEEEGGGTEEEE
T ss_pred EEEcHH-HcCC-CcEEEEEEeCCCCcccc
Confidence 999998 5556 99999999999987643
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=175.78 Aligned_cols=139 Identities=9% Similarity=0.159 Sum_probs=95.9
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+..+...... ....+.|.|.
T Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~-------------------------------------~~~~~~l~V~ 130 (250)
T 2fbo_J 88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGL-------------------------------------DAKSVVLKVT 130 (250)
T ss_dssp TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGE-------------------------------------EEEEEEEEET
T ss_pred CcceEEEeeCChhhCeEEEEEeccCccCCcccc-------------------------------------cceeEEEEEe
Confidence 345799999999999999999999776432100 0014556666
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEE--EE-------------------e
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR--IF-------------------I 559 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~--~~-------------------~ 559 (803)
.+|..+.+.+ .......+.+|+.+.|.|.+.|.|.|.+.|+|++..+....... .. .
T Consensus 131 ~~~~~~~~~~--~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (250)
T 2fbo_J 131 GHTPSNNVHV--STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRAS 208 (250)
T ss_dssp TTSCCSCCEE--CCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEE
T ss_pred ccCCCCeEEE--ecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccc
Confidence 6543333332 22234666779999999999999999999999998775532110 00 0
Q ss_pred cCCeEEEEEeeeccCcCeEEEEEEEcCCC---CeEEEEEEEE
Q psy2776 560 DEETSTIAIYSVVRADTSTYTVTATNAAG---STSLDLSLQV 598 (803)
Q Consensus 560 ~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g---~~s~s~~l~V 598 (803)
......|.|.++..+|+|.|+|.|.|..| ....++.|.|
T Consensus 209 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 209 FSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp EETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence 00225899999999999999999999544 4555555543
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=175.99 Aligned_cols=173 Identities=12% Similarity=0.108 Sum_probs=121.8
Q ss_pred ceEEeecceeEEEEEEc---CcCCCeeEEeeCCeeecCC------------------CcEEEE--ecCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYF---GFPRPEISWMKNGAEITDS------------------KACRIF--IDEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~---g~p~~~v~W~~~g~~i~~~------------------~~~~~~--~~~~~~~L~i~~v~~ 573 (803)
...+.+|+.+.|.|.+. +.|.+.+.|+|++...... .+..+. ......+|.|.+++.
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 93 (268)
T 3mj6_A 14 QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK 93 (268)
T ss_dssp EEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCG
T ss_pred ceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCH
Confidence 57789999999999988 6777889999966432211 222221 112337899999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.|..+.......+.+...+
T Consensus 94 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~--------------------------------------------------- 122 (268)
T 3mj6_A 94 ADEGIYTCEIRLKNESMVMKKPVELWVLP--------------------------------------------------- 122 (268)
T ss_dssp GGCEEEEEEEEETTCCCEEEEEEEEEEEC---------------------------------------------------
T ss_pred hHCEEEEEEEEecCCcceEEEEEEEEEec---------------------------------------------------
Confidence 99999999999876665444333332211
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE---eecCCCceEEeeCCeeccC---------------
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV---KASPAPSIVWFRNNKPLLS--------------- 715 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~---~g~p~~~v~W~~~~~~l~~--------------- 715 (803)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++.....
T Consensus 123 -----------------------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 179 (268)
T 3mj6_A 123 -----------------------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179 (268)
T ss_dssp -----------------------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCE
T ss_pred -----------------------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccc
Confidence 01225678899999999999 6779999999994321110
Q ss_pred ---CC----CeEEEe--eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 716 ---SP----KKREIF--DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 716 ---~~----~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+. +..+.. ......|.|.++ +.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 180 ~~~~~~~~~r~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (268)
T 3mj6_A 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTV-KESDQGIYTCSIYVGKLESRKTIVLHVV 236 (268)
T ss_dssp EECSSTTTTTEEECSCGGGTBCCEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccccccccceEeeccCCCCeEEEEECcC-ChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence 01 111110 123557999999 7999999999999999999998888884
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=176.89 Aligned_cols=188 Identities=10% Similarity=0.081 Sum_probs=65.2
Q ss_pred eeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-C--eeEEeeCCeeecCCCcEEEEecCCeEEEEEee
Q psy2776 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-P--EISWMKNGAEITDSKACRIFIDEETSTIAIYS 570 (803)
Q Consensus 494 ~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~ 570 (803)
.+.|.|..+|..+.+... ...+.+|+.++|+|.+.|.++ . +|+|+|+++.+..... .......+|.+..
T Consensus 77 ~v~l~V~~~P~~v~I~~~-----~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~ 148 (291)
T 1mq8_A 77 KTFLTVYWTPERVELAPL-----PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLV 148 (291)
T ss_dssp ECEEEECBCCSCCCBCCC-----CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCC
T ss_pred EEEEEEecCCCCCEEecC-----CccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeee
Confidence 667888888887766532 133788999999999988654 3 5899999988864321 1112234566666
Q ss_pred eccCcCeEEEEEEEcCCCC--------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEE
Q psy2776 571 VVRADTSTYTVTATNAAGS--------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~--------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (803)
...+|.+.|+|.|.|..+. .+....|.|..+|
T Consensus 149 ~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P---------------------------------------- 188 (291)
T 1mq8_A 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP---------------------------------------- 188 (291)
T ss_dssp SSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------------
T ss_pred eeccCCceEEEEEEecCCccCCccccccccceEEEEEecC----------------------------------------
Confidence 6666667999999987552 2333455554432
Q ss_pred EecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC---ceEEeeCCeeccCCCCe
Q psy2776 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNKPLLSSPKK 719 (803)
Q Consensus 643 a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~~~~l~~~~~~ 719 (803)
...+.+.. + ..+.+|+.++|+|.+.|.|++ .+.|++||..+....
T Consensus 189 ---------------------------~~~~~~~~-p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~-- 236 (291)
T 1mq8_A 189 ---------------------------ATPPQLVS-P--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-- 236 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------CCCceecC-C--cCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee--
Confidence 01122222 1 257789999999999998554 599999999986532
Q ss_pred EEEeeCceEEEEEecCCCCCC--ceeEEEEEEccCcceeeeEEEEE
Q psy2776 720 REIFDGENIILELKEADSETD--AGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 720 ~~~~~~~~~~L~i~~v~~~~D--~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
..+++..++.......++| .+.|+|.|.|..........|.|
T Consensus 237 --~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v 280 (291)
T 1mq8_A 237 --TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280 (291)
T ss_dssp ----------------------------------------------
T ss_pred --eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEE
Confidence 2234433322221102334 56666777764444445555555
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=163.52 Aligned_cols=133 Identities=12% Similarity=0.215 Sum_probs=95.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+ .+.... .+.|.|.
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~------------------------------------------~~~l~V~ 114 (222)
T 3sbw_C 78 GNAALQITDVKLQDAGVYRCMISY-GGADYK------------------------------------------RITVKVN 114 (222)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEES-SSEEEE------------------------------------------EEEEEEE
T ss_pred CEEEEEEcCcccccCeEEEEEEEe-CCCcee------------------------------------------EEEEEEE
Confidence 456899999999999999999999 443333 4455566
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeC-CeeecCCCcEEEEecCCe--EEEEEeeeccCcCe
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN-GAEITDSKACRIFIDEET--STIAIYSVVRADTS 577 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG 577 (803)
.+|..+.... ...+.+|+.+.|.|.+.|.|.|.+.|+++ |..+............++ ..+.+..+..+|.|
T Consensus 115 ~~~~~~~~~~------~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g 188 (222)
T 3sbw_C 115 APYNKINQRI------LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188 (222)
T ss_dssp BCCCCCEEEE------EEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTC
T ss_pred CCCCCCCcee------eeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCc
Confidence 6665543322 12567899999999999999999999998 665554332222221111 22333356679999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|+|.|.|..|....++.|.|...|
T Consensus 189 ~Y~C~a~n~~g~~~~~~~l~v~~~p 213 (222)
T 3sbw_C 189 IFYCTFRRLDPEENHTAELVIPELP 213 (222)
T ss_dssp EEEEEEEETTTTEEEEEEEECCCC-
T ss_pred EEEEEEEeCccceeeEEEEEecCCc
Confidence 9999999999999999999998665
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-18 Score=169.54 Aligned_cols=174 Identities=15% Similarity=0.094 Sum_probs=123.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee------------ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE------------ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~------------i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|++ .. .....++.+........|.|.+++.+|+|.|+|.
T Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 112 (237)
T 3sob_L 33 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ 112 (237)
T ss_dssp EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEe
Confidence 577899999999999999988999999842 11 0113466665556678999999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|...
T Consensus 113 ~~~~~~~~~~~~~~l~V~~~------------------------------------------------------------ 132 (237)
T 3sob_L 113 QSYTTPPTFGQGTKVEIKRT------------------------------------------------------------ 132 (237)
T ss_dssp ECSSSSCEECCCEEEEEECC------------------------------------------------------------
T ss_pred eccCCceEEcCcEEEEEecC------------------------------------------------------------
Confidence 99876532 22334444321
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCC-C-eEEE--eeCc---eEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSP-K-KREI--FDGE---NIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~-~-~~~~--~~~~---~~~L~i 732 (803)
..+|.+...+....+.+|+.++|.|.+.|. | .+.+.|+++|..+..+. . .... .++. ...|.|
T Consensus 133 --------~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i 204 (237)
T 3sob_L 133 --------VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTL 204 (237)
T ss_dssp --------CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEE
T ss_pred --------CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEE
Confidence 125666555444455568999999999985 5 57999999999886531 0 0001 1111 356889
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
..+ ..+|+|.|+|.|.|.........
T Consensus 205 ~~~-~~~d~g~Y~C~a~n~~~~~~~~~ 230 (237)
T 3sob_L 205 SKA-DYEKHKVYACEVTHQGLSSPVTK 230 (237)
T ss_dssp EHH-HHTTCCEEEEEEECTTCSSCEEE
T ss_pred cHH-HccCCCcEEEEEeeCCCCCceee
Confidence 998 67899999999999987654433
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-18 Score=166.39 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=121.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---e---------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---I---------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|.+ .. + ....++.+........|.|.+++.+|+|.|+|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (213)
T 3r06_A 10 SLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQ 89 (213)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred EEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEe
Confidence 577899999999999999999999999842 11 0 013456655555678999999999999999999
Q ss_pred EEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+. ......|.|..
T Consensus 90 ~~~~~~~~~~~~~~l~V~~------------------------------------------------------------- 108 (213)
T 3r06_A 90 QYYNYPWTFGPGTKLEIKR------------------------------------------------------------- 108 (213)
T ss_dssp ECSSSSCEECCCEEEEECC-------------------------------------------------------------
T ss_pred cccCCceEEcCCceEEEec-------------------------------------------------------------
Confidence 9987643 22334455522
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCC-C-eEEEe--eCc---eEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSP-K-KREIF--DGE---NIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~-~-~~~~~--~~~---~~~L~i 732 (803)
...+|.+...+....+..|+.++|.|.+.|.|++ .+.|+++|.++..+. . ..... ++. ...|.|
T Consensus 109 -------~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i 181 (213)
T 3r06_A 109 -------ADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSL 181 (213)
T ss_dssp -------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEE
T ss_pred -------cCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEe
Confidence 1126666665555556678899999999987653 899999999986531 1 10111 111 346888
Q ss_pred ecCCCCCCceeEEEEEEccCccee
Q psy2776 733 KEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
... ..+|+|.|+|.|.|......
T Consensus 182 ~~~-~~~d~g~YtC~v~n~~~~~~ 204 (213)
T 3r06_A 182 TKA-DYERHNLYTCEVTHKTSTAA 204 (213)
T ss_dssp EHH-HHHTCCEEEEEEEETTCSSC
T ss_pred CHH-HhccCCeEEEEEEecccCcc
Confidence 887 57889999999999876544
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=167.68 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=125.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee-------------ecCCCcEEEE--ecCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE-------------ITDSKACRIF--IDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~-------------i~~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y 579 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|.. .. .....++.+. ......+|.|.++..+|+|.|
T Consensus 12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y 91 (256)
T 3tf7_C 12 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVY 91 (256)
T ss_dssp EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEE
T ss_pred eEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEE
Confidence 577899999999999999999999999832 11 1112344442 234567899999999999999
Q ss_pred EEEEEcCCCCe----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 580 TVTATNAAGST----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 580 ~C~a~n~~g~~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
.|.|.|..+.. .....|.|..... ...|... .
T Consensus 92 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------------~~~~~~~-~-- 127 (256)
T 3tf7_C 92 FCAVSAKGTGSKLSFGKGAKLTVSPGGG-----------------------------------------GSGGGGS-G-- 127 (256)
T ss_dssp EEEEECTTCTTCEEECCCEEEEEEC-------------------------------------------------------
T ss_pred EEEEecCCCccceEECCCeEEEEeCCCC-----------------------------------------CcCCCCc-C--
Confidence 99999986532 1223455533100 0000000 0
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eec---c------------CCCC
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL---L------------SSPK 718 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l---~------------~~~~ 718 (803)
.-.......+|.+...+....+.+|++++|.|.+.+. .+.+.|+++. ..+ . ...+
T Consensus 128 -------~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r 199 (256)
T 3tf7_C 128 -------GGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDG 199 (256)
T ss_dssp -----------------CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTT
T ss_pred -------cccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCc
Confidence 0000001226677777778889999999999999887 6789999842 111 0 1234
Q ss_pred eEEEe-eCceEEEEEecCCCCCCceeEEEEEEccCccee--eeEEEEEE
Q psy2776 719 KREIF-DGENIILELKEADSETDAGDYKVVATNELGSAT--HGARVTVD 764 (803)
Q Consensus 719 ~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~--~~~~l~V~ 764 (803)
+.+.. .....+|.|.++ +.+|+|.|+|.|+|..|... .-.+|.|.
T Consensus 200 ~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~ 247 (256)
T 3tf7_C 200 YKATRTTQEDFFLTLESA-SPSQTSLYFCASSDAPGQLYFGEGSKLTVL 247 (256)
T ss_dssp CEEECCSSSBCEEEESSC-CGGGCEEEEEEEEEETTEEEECCCEEEEEE
T ss_pred eEEEeCCCCeEEEEECCC-CHHHCEEEEEEecCCCCccEECCCeEEEEE
Confidence 43333 234568999999 89999999999999877542 23445553
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-18 Score=166.65 Aligned_cols=170 Identities=17% Similarity=0.224 Sum_probs=116.6
Q ss_pred ceEEeecceeEEEEEEcCc-------CCCeeEEeeCCee------ec-----------CCCcEEEEec--CCeEEEEEee
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-------PRPEISWMKNGAE------IT-----------DSKACRIFID--EETSTIAIYS 570 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-------p~~~v~W~~~g~~------i~-----------~~~~~~~~~~--~~~~~L~i~~ 570 (803)
...+.+|+.+.|.|.+.+. +.+.+.|+|++.. +. ...++.+..+ .+..+|.|.+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 88 (214)
T 2zg1_A 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGD 88 (214)
T ss_dssp EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEcc
Confidence 5778999999999998864 5678999998752 10 1134443321 2346899999
Q ss_pred eccCcCeEEEEEEEcCCCCeE----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecC
Q psy2776 571 VVRADTSTYTVTATNAAGSTS----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~s----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~ 646 (803)
++.+|+|.|.|.+.|..+... ..+.|.|...+
T Consensus 89 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------- 124 (214)
T 2zg1_A 89 ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI-------------------------------------------- 124 (214)
T ss_dssp CCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC--------------------------------------------
T ss_pred CCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC--------------------------------------------
Confidence 999999999999998763321 34566665422
Q ss_pred CCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec----CCCceEEeeCCeeccCCCCeEEE
Q psy2776 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS----PAPSIVWFRNNKPLLSSPKKREI 722 (803)
Q Consensus 647 ~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~~~~~l~~~~~~~~~ 722 (803)
.+|.+.. +. .+.+|+.++|.|.+.|. |.|.+.|++++..+... +
T Consensus 125 ------------------------~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~-~---- 172 (214)
T 2zg1_A 125 ------------------------EKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP-E---- 172 (214)
T ss_dssp ------------------------CCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS-S----
T ss_pred ------------------------CCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC-C----
Confidence 1344432 11 26789999999999874 88999999998764322 1
Q ss_pred eeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 723 ~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
......|.|..+ ..+|+|.|+|.|.|..|....+..++++
T Consensus 173 -~~~~~~L~i~~~-~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 173 -TTRSSELTLTPR-PEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp -CCCSSEEEECCC-TTCCSCEEEEEEECC----CCEEEEECC
T ss_pred -ceeEEEEEEecc-cHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 123457999998 7899999999999988766555555543
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=167.86 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=118.4
Q ss_pred ceEEeecceeEEEEEE-cCcC-CCeeEEeeCC--eeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKY-FGFP-RPEISWMKNG--AEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~-~g~p-~~~v~W~~~g--~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+ .+.+ .+.+.|+|++ ..+. ...++.+........|.|.+++.+|+|.|.
T Consensus 9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 88 (216)
T 2xzc_L 9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY 88 (216)
T ss_dssp EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEE
Confidence 4678899999999995 4443 5799999854 2210 124566555556779999999999999999
Q ss_pred EEEEcCCCC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceee
Q psy2776 581 VTATNAAGS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658 (803)
Q Consensus 581 C~a~n~~g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~ 658 (803)
|.|.|..+. ......|.|...
T Consensus 89 C~~~~~~~~~~~~~~~~l~V~~~--------------------------------------------------------- 111 (216)
T 2xzc_L 89 CGTWDSSLNPVFGGGTKLEIKRT--------------------------------------------------------- 111 (216)
T ss_dssp EEEECTTSCEEEBCCEEEEECCC---------------------------------------------------------
T ss_pred EEEEeCCCcceECCCEEEEEcCC---------------------------------------------------------
Confidence 999998761 122334554321
Q ss_pred eeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE--EEe--eCc---eEE
Q psy2776 659 ALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR--EIF--DGE---NII 729 (803)
Q Consensus 659 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~--~~~--~~~---~~~ 729 (803)
..+|.+...+....+..|+.++|.|.+.|. |.+ .|.|+++|.++..+.... ... ++. .+.
T Consensus 112 -----------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~ 180 (216)
T 2xzc_L 112 -----------VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSST 180 (216)
T ss_dssp -----------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEE
T ss_pred -----------CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEE
Confidence 125555543333233468999999999984 554 899999999886541111 111 111 247
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
|.|..+ ..+|+|.|+|.|.|.......
T Consensus 181 L~i~~~-~~~d~g~Y~C~a~n~~~~~~~ 207 (216)
T 2xzc_L 181 LTLSKA-DYEKHKVYACEVTHQGLSSPV 207 (216)
T ss_dssp EEEEHH-HHTTCCEEEEEEECTTCSSCE
T ss_pred EEECHH-HhCCCCcEEEEEEcCCCCCce
Confidence 999998 689999999999998876543
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-18 Score=164.77 Aligned_cols=171 Identities=11% Similarity=0.164 Sum_probs=121.6
Q ss_pred eeeeccccceeEEEEe-cCCceeeEEeecCeecc--ccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 315 VTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIK--ESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
...+.+|+++.|.|.+ +.|.+.+.|+|++..+. ........ ..
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~--------------------------------- 49 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK-GP--------------------------------- 49 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEE-CS---------------------------------
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEec-CC---------------------------------
Confidence 4556789999999999 78899999999975322 11111000 00
Q ss_pred eecCCCceeeeeeecCcceeee-eee---EEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 392 LDFGSGGWWFESKYKDDSLIKG-RNI---TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
....+ ... .+.++...|.|.+++.+|+|.|+|.+.+..+.... .+.
T Consensus 50 -----------------~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~l-------------~V~ 99 (184)
T 2ny1_B 50 -----------------SKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL-------------LVF 99 (184)
T ss_dssp -----------------CTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEEEEEE-------------EEE
T ss_pred -----------------hhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcCCCcEEE-------------EEE
Confidence 00000 000 01344667999999999999999999987542221 111
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCe
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGA 547 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~ 547 (803)
.+..+ ....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus 100 ------------------------------~~~~~-------------~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~ 136 (184)
T 2ny1_B 100 ------------------------------GLTAN-------------SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRG 136 (184)
T ss_dssp ------------------------------EEEES-------------SCSEEETTCCEEEEEECCTTCCCEEEEECTTS
T ss_pred ------------------------------EecCC-------------CCceeecCCCEEEEEEcCCCCCCEEEEEeCCC
Confidence 00011 13467889999999999999999999999986
Q ss_pred eecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 548 EITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 548 ~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.. ....|.|.++..+|+|.|+|.|.|..+..+.++.|.|.+.|
T Consensus 137 ~~~~----------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 137 KNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp CEEE----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred cccc----------CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence 5521 24689999999999999999999999999999999998765
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-18 Score=159.57 Aligned_cols=155 Identities=14% Similarity=0.223 Sum_probs=111.5
Q ss_pred CceeeeccccceeEEEEe-cCC-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSP-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
|....+.+|+.+.|.|.+ +.| .+.+.|+|+|..+.....
T Consensus 11 p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~--------------------------------------- 51 (170)
T 3ry4_A 11 PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------------------------------- 51 (170)
T ss_dssp SCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS---------------------------------------
T ss_pred CCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc---------------------------------------
Confidence 333445679999999999 665 689999999988865321
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.+.|.+++.+|+|.|+|.+.+.....
T Consensus 52 ---------------------------------~~~~~~~~~~d~G~Y~C~~~~~~~s~--------------------- 77 (170)
T 3ry4_A 52 ---------------------------------PSYRFKANNNDSGEYTCQTGQTSLSD--------------------- 77 (170)
T ss_dssp ---------------------------------SEEEEECCGGGCEEEEEEETTSBCCC---------------------
T ss_pred ---------------------------------ceEEEecccccCeEEEEEEeCCCceE---------------------
Confidence 14566788899999999998743221
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEI 549 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i 549 (803)
.+.|.|..+|.. ... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+
T Consensus 78 -----------------------~~~l~v~~~~~~-----~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~ 127 (170)
T 3ry4_A 78 -----------------------PVHLTVLFEWLV-----LQT--PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ 127 (170)
T ss_dssp -----------------------CEEEEEECCSEE-----EEC--SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEE
T ss_pred -----------------------eEEEEEECCceE-----ecC--CCceeecCCeEEEEEECCCCCCCceEEEEECCeEc
Confidence 223333333311 111 134578899999999995 4566899999999876
Q ss_pred cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEE
Q psy2776 550 TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQV 598 (803)
Q Consensus 550 ~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V 598 (803)
.. ......|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 128 ~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 128 KF--------SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EE--------ESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cc--------cCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 42 223568999999999999999999999886 455566665
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=157.08 Aligned_cols=135 Identities=11% Similarity=0.137 Sum_probs=93.3
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE----EEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI----TYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
..+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+..... ........|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 35677777665 67889999999999974 7789999999876542211 111245789999999999999999998
Q ss_pred cCCc-----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 218 NEAG-----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 218 n~~g-----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|... ..+..+.|.|...+.
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~-------------------------------------------------------- 107 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYE-------------------------------------------------------- 107 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSC--------------------------------------------------------
T ss_pred cCCCCccccCCCCCEEEEeeccCC--------------------------------------------------------
Confidence 7532 223345666654310
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccc
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKE 348 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~ 348 (803)
.+.+.. .+. ..+.+|+.++|.|.+..+.+.+.|+|+|..+..
T Consensus 108 ------------~p~i~~-~p~-~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~ 149 (201)
T 1nkr_A 108 ------------KPSLSA-QPG-PTVLAGENVTLSCSSRSSYDMYHLSREGEAHER 149 (201)
T ss_dssp ------------CCEEEE-ESC-SEECTTCEEEEEEEESSCCSEEEEEETTCSSCE
T ss_pred ------------CCceec-CCC-CccCCCCeEEEEEeCCCCCceEEEEECCcccCc
Confidence 011111 111 245679999999999656789999999887754
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-18 Score=145.49 Aligned_cols=94 Identities=31% Similarity=0.322 Sum_probs=89.1
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.||.|+..+.+..+.+|+++.|.|.+.|.|.|.|.|+|||.+|..+.++.+..++...+|.|.++ +.+|+|.|+|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 90 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA-LPTDAGVYVCRARN 90 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSC-CGGGCEEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecC-ChhhCEEEEEEEEE
Confidence 48999999999999999999999999999999999999999999999999888888899999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
.+|..+.++.|.|..
T Consensus 91 ~~G~~~~~~~l~V~~ 105 (107)
T 3knb_B 91 AAGEAYAAAAVTVLE 105 (107)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEEc
Confidence 999999999999864
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=166.12 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=119.8
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--eeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+.+. |.+.+.|+|++ ..+. ...++.+........|.|.+++.+|+|.|.
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 90 (256)
T 3ux9_B 11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYY 90 (256)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEE
Confidence 4678899999999999987 77899999852 1111 124566655556679999999999999999
Q ss_pred EEEEcCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 581 VTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 581 C~a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|.|.|..+.. .....|.|...+........+.|.
T Consensus 91 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~------------------------------------------- 127 (256)
T 3ux9_B 91 CQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYT------------------------------------------- 127 (256)
T ss_dssp EEEEETTTTEEEECCCEEEEEC----------------------------------------------------------
T ss_pred EEEEECCCCceEECCCEEEEEECCCCCcCccceeEEe-------------------------------------------
Confidence 9999876532 233566665533000000000000
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceec------c-----------CC
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPL------L-----------SS 716 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l------~-----------~~ 716 (803)
.......++.+.. +....+.+|++++|.|.+.|.| .+.+.|+|+ +..+ . ..
T Consensus 128 -------~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (256)
T 3ux9_B 128 -------KLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVK 199 (256)
T ss_dssp --------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGT
T ss_pred -------ecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCcccc
Confidence 0000111223333 3345688999999999999877 779999996 3222 1 12
Q ss_pred CCeEEEee--CceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 717 PKKREIFD--GENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 717 ~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.++.+..+ ....+|.|.++ +.+|+|.|.|.|.|..
T Consensus 200 ~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 200 GRFTISRDNSKNTLYLQMNSL-RAEDTAVYYCARYIDF 236 (256)
T ss_dssp TTEEEEEETTTTEEEEEECSC-CGGGCEEEEEEEEETT
T ss_pred ceEEEEecCCCCEEEEEECCC-ChhhCEEEEEEEEcCC
Confidence 36666654 45678999999 7999999999999963
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=165.23 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=52.7
Q ss_pred EeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+++.|.|.+ |.|.+.|+|+|..+..... ....|.|.++..+|+|.|+|.|.|..|..
T Consensus 119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred cCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 4489999999988 8899999999999875322 45689999999999999999999998765
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=171.17 Aligned_cols=175 Identities=11% Similarity=0.037 Sum_probs=121.3
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-----CeE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-----STS 591 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-----~~s 591 (803)
..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... ..........|.|.+++.+|+|.|+|.|.|..+ ..+
T Consensus 16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S 94 (257)
T 1b6u_A 16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS 94 (257)
T ss_dssp SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence 56789999999999975 56789999998755321100 000112357899999999999999999986532 235
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|.+.. .
T Consensus 95 ~~~~L~V~~~~--------------------------------------------------------------------~ 106 (257)
T 1b6u_A 95 DPLDIVITGLY--------------------------------------------------------------------E 106 (257)
T ss_dssp CCEEEEEECSS--------------------------------------------------------------------C
T ss_pred CCEEEecccCC--------------------------------------------------------------------C
Confidence 55667665421 1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+. ..+.+|++++|.|.+.+.| +.|.|+|+|..+....+...... .....|.|.++ + |+|.|+|.|.|
T Consensus 107 ~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v-~--D~G~Y~C~a~~ 181 (257)
T 1b6u_A 107 KPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA-T--HGGTYRCFGSF 181 (257)
T ss_dssp CCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEEC-C--SCEEEEEEEEC
T ss_pred CcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEeccc-c--cCEEEEEEEEc
Confidence 455544443 4678999999999998754 68999999987754332211111 23578999998 5 99999999998
Q ss_pred cCc-----ceeeeEEEEEEee
Q psy2776 751 ELG-----SATHGARVTVDVE 766 (803)
Q Consensus 751 ~~G-----~~~~~~~l~V~~~ 766 (803)
..+ ..+..+.|.|.+.
T Consensus 182 ~~~p~~~s~~S~pl~L~V~g~ 202 (257)
T 1b6u_A 182 RDSPYEWSNSSDPLLVSVTGN 202 (257)
T ss_dssp SSCTTBBCCCCCCEEECCBCC
T ss_pred CCCCcccccCCCCEEEEEecc
Confidence 632 3356677777654
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-17 Score=162.82 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=119.1
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|++ .. +. ...++.+........|.|.++..+|+|
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 89 (247)
T 1svz_A 10 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG 89 (247)
T ss_dssp EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCE
Confidence 57789999999999999988 6899999853 21 11 134566555556679999999999999
Q ss_pred EEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|.|.|.|..+. ....+.|.|..++... +
T Consensus 90 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~------------------------------------------~-------- 119 (247)
T 1svz_A 90 IYYCFQGSHFPPTFGGGTKLEIKGGGGSG------------------------------------------G-------- 119 (247)
T ss_dssp EEEEEECSSSSCEECCCEEEEEC---------------------------------------------------------
T ss_pred EEEEEEccCCccEECCCEEEEEECCcccc------------------------------------------c--------
Confidence 999999998654 2233566665432000 0
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCC--eec------c-----------C
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KPL------L-----------S 715 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~--~~l------~-----------~ 715 (803)
.......++.++..+....+.+|++++|.|.+.+.| .+.+.|+|++ ..+ . .
T Consensus 120 --------~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (247)
T 1svz_A 120 --------GGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDF 191 (247)
T ss_dssp ----------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGG
T ss_pred --------cccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccc
Confidence 000000122233333445689999999999999885 5689999963 211 0 1
Q ss_pred CCCeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 716 SPKKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 716 ~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..++.+.. .....+|.|.++ +.+|+|.|.|.|.|.
T Consensus 192 ~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 192 KGRFAFSLDTSTSTAFLQINNL-KNEDTATYFCVRDRH 228 (247)
T ss_dssp SSSEEEEEEGGGTEEEEEECSC-CGGGCEEEEEEEEEG
T ss_pred cCcEEEEEecCCCEEEEEECCC-ChhHCEEEEEEEecc
Confidence 34555554 345678999999 799999999999995
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=159.08 Aligned_cols=155 Identities=15% Similarity=0.267 Sum_probs=113.9
Q ss_pred ceEEeecceeEEEEEEc--CcCCCeeEEee--CCeee----------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYF--GFPRPEISWMK--NGAEI----------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~--g~p~~~v~W~~--~g~~i----------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
.....+|+++.|.|... +.+.+.+.|+| ++..| ....++.+. . +++|.|.+++.+|+|.|+|.
T Consensus 8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--~-ngsL~I~~v~~~DsG~Y~c~ 84 (182)
T 1hnf_A 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--K-NGTLKIKHLKTDDQDIYKVS 84 (182)
T ss_dssp EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC--T-TSCEEECSCCGGGCEEEEEE
T ss_pred EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC--C-CCCEEECCCChhhCEEEEEE
Confidence 46678899999999532 24567999999 88877 234455543 2 34899999999999999999
Q ss_pred EEcCCCCeE--EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 583 ATNAAGSTS--LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 583 a~n~~g~~s--~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
|.|..|... ..+.|.|..+.
T Consensus 85 ~~n~~g~~~~~~~~~L~V~~~~---------------------------------------------------------- 106 (182)
T 1hnf_A 85 IYDTKGKNVLEKIFDLKIQERV---------------------------------------------------------- 106 (182)
T ss_dssp EEETTSCEEEEEEEEEEEECCC----------------------------------------------------------
T ss_pred EEeCCCceeEEEEEEEEEcCcC----------------------------------------------------------
Confidence 999988764 45666664421
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCC
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETD 740 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D 740 (803)
.+|.+.. .+..+.|+|.+.+.|.+.+.|+++|..+ .. ... .|.+.. ..+|
T Consensus 107 ----------~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~--~~~d 156 (182)
T 1hnf_A 107 ----------SKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL-------SQR--VITHKW--TTSL 156 (182)
T ss_dssp ----------CCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-------ESS--CEEEEC--CSCE
T ss_pred ----------CCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-------CCc--EEEEec--ccCC
Confidence 1344432 2347899999999999999999999887 11 122 244433 3689
Q ss_pred ceeEEEEEEccCcceeeeEEEE
Q psy2776 741 AGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
+|.|+|.|+|.+|..+....+.
T Consensus 157 ~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 157 SAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp EEEEEEEEECSSCEEEEEEEEE
T ss_pred CcEEEEEEEeCCCCcEEcceec
Confidence 9999999999999998877663
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=163.10 Aligned_cols=177 Identities=15% Similarity=0.245 Sum_probs=120.7
Q ss_pred cCcCeeeecCCcEEEEEEECccCC-CeeEEEEcCeecc--------------ceeEE----------EecCeeEEEEecC
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPT-PDIKWYKDDSLIK--------------GRNIT----------YENNVARFTVVNC 204 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~-p~i~W~~~~~~~~--------------~~~~~----------~~~~~~~L~i~~v 204 (803)
.+.++.+.+|+.+.|.|.+.+.|. +.+.|++++.... ..++. .... ..|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~L~i~~v 84 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-GRLVLAEA 84 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-CCEEESSC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-ceEEEccc
Confidence 356678889999999999998885 8999998664321 12222 2222 34999999
Q ss_pred CCCcceEEEEEEEcCC-cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceee
Q psy2776 205 SESSEGRYTCKATNEA-GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~-g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (803)
+.+|+|.|+|.+.|.. +.....+.|.|...|..+.
T Consensus 85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~-------------------------------------------- 120 (231)
T 2pet_A 85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE-------------------------------------------- 120 (231)
T ss_dssp CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCE--------------------------------------------
T ss_pred CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcE--------------------------------------------
Confidence 9999999999999987 6677778888876632110
Q ss_pred ccccccccceeeeeeccCCCccccccccCCceeeeccccce-eEEEEe--cCCceeeEEeecCeeccccceeEEEEcCce
Q psy2776 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDA-TFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQ 360 (803)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~ 360 (803)
+...+....+.+|+.+ .|.|.+ +.|.+.+.|+++|.++..... ...
T Consensus 121 -------------------------~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~------~~~ 169 (231)
T 2pet_A 121 -------------------------VSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVE------MNP 169 (231)
T ss_dssp -------------------------EEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSS------CCS
T ss_pred -------------------------EecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccc------ccc
Confidence 0111222334468877 999998 699999999999999876541 000
Q ss_pred eEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEE
Q psy2776 361 RKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 440 (803)
Q Consensus 361 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 440 (803)
...........+.|.|+|.. .|.|.....+|.|.|+|
T Consensus 170 ~~~~~~~~~~~~~g~~~~~~-------------------------------------------~L~i~~~~~dd~g~Y~C 206 (231)
T 2pet_A 170 EGYMTSRTVREASGLLSLTS-------------------------------------------TLYLRLRKDDRDASFHC 206 (231)
T ss_dssp SEEEEEEEEECTTSCEEEEE-------------------------------------------EEEEECCGGGGGCEEEE
T ss_pred ceeecceeEecCCCeEEEEE-------------------------------------------EEEEecchhhCCceEEE
Confidence 11222233334455665542 37787666667999999
Q ss_pred EeeCC
Q psy2776 441 KATNE 445 (803)
Q Consensus 441 ~a~~~ 445 (803)
.|.|.
T Consensus 207 ~a~n~ 211 (231)
T 2pet_A 207 AAHYS 211 (231)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99994
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=164.55 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=116.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eee------c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEI------T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i------~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ . ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (227)
T 1mju_H 9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS 88 (227)
T ss_dssp EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCc
Confidence 46788999999999999877 6789999863 211 0 0245555432 3567999999999
Q ss_pred CcCeEEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 574 ADTSTYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
+|+|.|.|.|.|..+. ......|.|...
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~--------------------------------------------------- 117 (227)
T 1mju_H 89 DDSAVYYCANKLGWFPYWGQGTLVTVSAA--------------------------------------------------- 117 (227)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEECSS---------------------------------------------------
T ss_pred ccCEEEEEEECCCCceEEcCcEEEEEcCC---------------------------------------------------
Confidence 9999999999986321 112235555331
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccC--CCCeEEEeeC---
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLS--SPKKREIFDG--- 725 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~--~~~~~~~~~~--- 725 (803)
...+|.+........+.+|+.++|.|.+.|. |.+ .|.|++++..+.. .... ...+
T Consensus 118 ----------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~--~~~g~~~ 179 (227)
T 1mju_H 118 ----------------KTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAV--LQSDLYT 179 (227)
T ss_dssp ----------------CCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE--EETTEEE
T ss_pred ----------------CCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCce--ecCCeEE
Confidence 0114444433223346689999999999986 777 9999999887531 1111 1112
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
....|.|..+ ..+| |.|+|.|.|..+.....+.+.+.+
T Consensus 180 ~~s~L~i~~~-~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~ 217 (227)
T 1mju_H 180 LSSSVTVTSS-TWPS-QSITCNVAHPASSTKVDKKIEPRG 217 (227)
T ss_dssp EEEEEEECTT-TTTT-SCCEEEEEEGGGTEEEEEECCCCC
T ss_pred EEEEEEEchh-hcCC-CeEEEEEEECCCCcceEEEeCCCC
Confidence 2357899888 5567 999999999888877666665543
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=163.77 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=126.2
Q ss_pred CceeeeccccceeEEEEe-cCCce---eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDI---QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~---~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
|....+..|+++.|.|.+ +.|.+ .+.|+|++..+............. ..+... ..|.+.
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~---~~~~~~---~~~r~~----------- 68 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYG---LHVSPA---YEGRVE----------- 68 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTE---EEECGG---GTTTEE-----------
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCC---eEeCcc---ccceEE-----------
Confidence 455666779999999999 66544 589999987765433222221111 000000 000000
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
+. ......+..+|+|.+++.+|+|.|.|.+.+..+......
T Consensus 69 ----------------------~~--~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--------------- 109 (218)
T 4frw_A 69 ----------------------QP--PPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQAR--------------- 109 (218)
T ss_dssp ----------------------CC--SSCCCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEE---------------
T ss_pred ----------------------Ee--cccccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeE---------------
Confidence 00 001122345699999999999999999987665544421
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
..+.+..++.... .......+..|+.+.|.|.+.|.|+|.++|++++..
T Consensus 110 --------------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~ 158 (218)
T 4frw_A 110 --------------------------LRLRVLVPPLPSL-----NPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG 158 (218)
T ss_dssp --------------------------EEEEEEBCCCCEE-----EECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred --------------------------EEEEEeeecccee-----eeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence 1122222221110 111234556789999999999999999999999987
Q ss_pred ecCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 549 ITDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 549 i~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+.......... ....+.|.|.++..+|+|.|+|.|+|..|..+..+.+.|..
T Consensus 159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 159 TTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp EEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred cccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 76543221110 01136899999999999999999999999988777776654
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=168.16 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=119.3
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeCCe--ee----------c--CCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKNGA--EI----------T--DSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g~--~i----------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|++. .+ . ...++.+....+...|.|.+++.+|+|
T Consensus 43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 122 (252)
T 3bkj_L 43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLG 122 (252)
T ss_dssp EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCE
Confidence 57789999999999999988 68999999641 11 0 124555555556679999999999999
Q ss_pred EEEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|.|.|.|..+.. .....|.|...
T Consensus 123 ~Y~C~~~~~~~~~~~~~~~l~V~~~------------------------------------------------------- 147 (252)
T 3bkj_L 123 VYYCFQASLVPLTFGAGTKLELKRA------------------------------------------------------- 147 (252)
T ss_dssp EEEEEECSBSSCEECCCEEEEECCC-------------------------------------------------------
T ss_pred EEEEEEEcCCccEECCCEEEEEeCC-------------------------------------------------------
Confidence 9999999876532 12234555321
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE--EE--eeCc---e
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR--EI--FDGE---N 727 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~--~~--~~~~---~ 727 (803)
..+|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+++|.++..+.... .. .++. .
T Consensus 148 -------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~ 214 (252)
T 3bkj_L 148 -------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS 214 (252)
T ss_dssp -------------CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEE
T ss_pred -------------CcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEE
Confidence 114555544333334479999999999985 544 799999999886541110 01 1111 3
Q ss_pred EEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 728 IILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.|..+ ..+|+|.|+|.|.|.....
T Consensus 215 s~L~i~~~-~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 215 STLTLTKD-EYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp EEEEEEHH-HHHHCCEEEEEEECTTCSS
T ss_pred EEEEEcch-hccCCCeEEEEEEeCCCCC
Confidence 56999999 6789999999999987664
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-17 Score=163.16 Aligned_cols=227 Identities=10% Similarity=0.084 Sum_probs=120.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEE----EecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNIT----YENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
..+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... .......|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 35677777665 67889999999999975 56789999998755322111 11235689999999999999999998
Q ss_pred cCCc-----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 218 NEAG-----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 218 n~~g-----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|..+ ..+..+.|.|.+...
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~-------------------------------------------------------- 106 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYE-------------------------------------------------------- 106 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSC--------------------------------------------------------
T ss_pred ccCCCccccccCCCEEEecccCCC--------------------------------------------------------
Confidence 6532 123345666654310
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCC
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
.+.+.. .+. ..+.+|+.++|.|.+..+.+.+.|+|+|..+...........+
T Consensus 107 ------------~P~l~~-~p~-~~V~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~-------------- 158 (257)
T 1b6u_A 107 ------------KPSLSA-QPG-PTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNG-------------- 158 (257)
T ss_dssp ------------CCEEEC-SSC-TTCBTTCEEEEEEECSSCCSEEEEEETTSSCEECCBCBCCSSS--------------
T ss_pred ------------CcceEc-cCC-CccCCCCEEEEEEeCCCCCcEEEEEECCcccCcccccccccCC--------------
Confidence 011111 111 2356799999999994445789999998776532211000000
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
.....|.|.+++ |+|.|+|.|.+..+....+
T Consensus 159 -----------------------------------------------~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s 189 (257)
T 1b6u_A 159 -----------------------------------------------TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWS 189 (257)
T ss_dssp -----------------------------------------------CCBEEEEEEECC--SCEEEEEEEECSSCTTBBC
T ss_pred -----------------------------------------------ceeEEEEecccc--cCEEEEEEEEcCCCCcccc
Confidence 113458899998 9999999999764321111
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
. .+..+.|.|..+|..... ++.......|..+.|.|.+
T Consensus 190 ~-------------------------------------~S~pl~L~V~g~p~~~~p-----~~~~~~~~~g~~~~l~~~~ 227 (257)
T 1b6u_A 190 N-------------------------------------SSDPLLVSVTGNPSNSWP-----SPTEPSSETGNPRHLHAAA 227 (257)
T ss_dssp C-------------------------------------CCCCEEECCBCCC-----------------------------
T ss_pred c-------------------------------------CCCCEEEEEeccCCCCCC-----CCcccCccCCCeEEEEEEE
Confidence 0 012466677776654311 1112234568899999876
Q ss_pred cCcCCCeeEEeeCC
Q psy2776 533 FGFPRPEISWMKNG 546 (803)
Q Consensus 533 ~g~p~~~v~W~~~g 546 (803)
|.+.+.+.|..-+
T Consensus 228 -~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 228 -EQKLISEEDLNLD 240 (257)
T ss_dssp --------------
T ss_pred -cchHHHHHHhhhh
Confidence 4677788897654
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=168.23 Aligned_cols=174 Identities=13% Similarity=0.084 Sum_probs=113.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee------------ecCC---C-cEEEEe-cCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE------------ITDS---K-ACRIFI-DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~------------i~~~---~-~~~~~~-~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+ +.+.+.|+|.. .. ...+ . ++.+.. ......|.|.+++.+|+|
T Consensus 36 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 114 (270)
T 3qib_D 36 YLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSA 114 (270)
T ss_dssp EEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCE
T ss_pred eEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCe
Confidence 467899999999999876 77899999822 11 0011 0 444332 234679999999999999
Q ss_pred EEEEEEEcCCC----CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 578 TYTVTATNAAG----STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 578 ~Y~C~a~n~~g----~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|.+.+..+ .......|.|....
T Consensus 115 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------- 143 (270)
T 3qib_D 115 LYLCASSLNWSQDTQYFGPGTRLLVLEDL--------------------------------------------------- 143 (270)
T ss_dssp EEEEEEESCTTCCCCEECCCEEEEEESCS---------------------------------------------------
T ss_pred EEEEEEecCCCccceEECCcEEEEEcccc---------------------------------------------------
Confidence 99999997532 12223345543310
Q ss_pred cceeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEE---E-----
Q psy2776 654 TTELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKRE---I----- 722 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~---~----- 722 (803)
....+|.+. ..+....+..|+.++|.|.+.| .|.+ .+.|+++|.++..+.+... .
T Consensus 144 --------------~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 209 (270)
T 3qib_D 144 --------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPAL 209 (270)
T ss_dssp --------------TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTS
T ss_pred --------------ccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccC
Confidence 011134333 3333445667999999999998 5766 8999999999865322110 0
Q ss_pred eeCc---eEEEEEecCCCCCC-ceeEEEEEEccCcceee
Q psy2776 723 FDGE---NIILELKEADSETD-AGDYKVVATNELGSATH 757 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~~ 757 (803)
.++. ...|.|... ..+| +|.|+|.|.|.......
T Consensus 210 ~~~~~~~~s~L~i~~~-~~~d~~g~YtC~v~~~~l~~~~ 247 (270)
T 3qib_D 210 NDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEND 247 (270)
T ss_dssp SSCCEEEEEEEEEEHH-HHHSTTCEEEEEEEECCBCTTS
T ss_pred CCCCEEEEEEEEEcHH-HhccCCCeEEEEEEecCCCCcc
Confidence 1121 245788877 4566 99999999998776553
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=168.17 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=125.4
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--eeec-----------------CCCcEEEEe--cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AEIT-----------------DSKACRIFI--DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~i~-----------------~~~~~~~~~--~~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +.+.+.|+|.. ..+. ...++.+.. ......|.|.++..
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (280)
T 3fku_X 9 AEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRS 88 (280)
T ss_dssp CCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCS
T ss_pred CEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 5678899999999999876 55789999742 1110 013455542 33457899999999
Q ss_pred CcCeEEEEEEEcCC---------CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEe
Q psy2776 574 ADTSTYTVTATNAA---------GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~---------g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 644 (803)
+|+|.|.|.+.|.. ........|.|...+..
T Consensus 89 ~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~---------------------------------------- 128 (280)
T 3fku_X 89 EDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGG---------------------------------------- 128 (280)
T ss_dssp TTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------------------------------------
T ss_pred hhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCc----------------------------------------
Confidence 99999999999861 11222344555331100
Q ss_pred cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cC-CCceEEeeC--Ceecc------
Q psy2776 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SP-APSIVWFRN--NKPLL------ 714 (803)
Q Consensus 645 n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p-~~~v~W~~~--~~~l~------ 714 (803)
.+.. .......+|.+...+. ..+.+|++++|.|.+.+ .+ .+.+.|++. +..+.
T Consensus 129 --~~~~--------------~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~ 191 (280)
T 3fku_X 129 --SGGG--------------GSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRN 191 (280)
T ss_dssp --------------------------CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTT
T ss_pred --cCCC--------------CCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEec
Confidence 0000 0000011444555555 78899999999999998 44 478999983 22221
Q ss_pred ------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc---eeeeEEEEEEeeccCCCCCc
Q psy2776 715 ------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS---ATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 715 ------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~~~~pp~~~ 774 (803)
...++.+..++..+.|.|.++ +.+|+|.|.|.|.|..+. ....+.|.|...+..+|.+.
T Consensus 192 ~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~ 259 (280)
T 3fku_X 192 NDRPSGISERFSASRSGNTASLTITGL-QPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAA 259 (280)
T ss_dssp CCCCSSSCTTEEEEEETTEEEEEECSC-CGGGCSEEEEEEEETTTTEEEEBCCCEEEEC----------
T ss_pred cccCCCCCCCEEEEccCCEEEEEECCC-CHHHCEEEEEEEecCCCCceEECCCEEEEECCCCCCCCcEE
Confidence 235677777777889999999 799999999999998732 24456788876666677765
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=180.58 Aligned_cols=236 Identities=10% Similarity=0.075 Sum_probs=146.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeE-Ee--eCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEIS-WM--KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSL 592 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~-W~--~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~ 592 (803)
...+.+|+.+.|.|.+.|.|.|.+. |+ ++|..+.......+......+.|.|.++...|+|.|+|.|.|..|. .+.
T Consensus 173 ~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~ 252 (731)
T 2v5y_A 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252 (731)
T ss_dssp CEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECC
T ss_pred ceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCccee
Confidence 5788999999999999999999998 88 7887765432111111122479999999999999999999999998 677
Q ss_pred EEEEEEeeeEeE---------eeecc------------------cccEEEeee-----eCCccceEEEcccccCceeEEE
Q psy2776 593 DLSLQVLGYIIQ---------QQEKN------------------SLKFTKVAT-----LDPSTLQYTVENLRDKSEYYFQ 640 (803)
Q Consensus 593 s~~l~V~~~p~~---------~~~~~------------------~~~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 640 (803)
.+.|.|..+|.. ..... .+.|..... .......+++.+|.+...|.|+
T Consensus 253 ~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 332 (731)
T 2v5y_A 253 YAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEIS 332 (731)
T ss_dssp CEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSEEEECSCCTTCEEEEE
T ss_pred eEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcceEEEeCCCCCCEEEEE
Confidence 788888877610 00001 122221110 1123467899999999999999
Q ss_pred EEEe--cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-----CC--CceEEeeCCe
Q psy2776 641 VFAE--NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-----PA--PSIVWFRNNK 711 (803)
Q Consensus 641 ~~a~--n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-----p~--~~v~W~~~~~ 711 (803)
|+|. |..|.+..+....+.+.. ..++.+|..+. ........+.|....... +. -.+.|...+.
T Consensus 333 V~A~~~N~~G~s~~S~~~~~~t~~----~~p~~~P~~~~----~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~ 404 (731)
T 2v5y_A 333 VLLTRPGEGGTGSPGPALRTRTKC----ADPMRGPRKLE----VVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG 404 (731)
T ss_dssp EEEECSSTTCSCCBCCCEEEECCC----CCCSCCCEEEE----EEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESS
T ss_pred EEEEecCCCccccCCCcEEeeecC----CCCCCCCceeE----EEeccCCeEEEEEECCCcccccceeeeEEEEEEEccC
Confidence 9999 999999877654443322 12333454332 112223466666654211 00 1244443221
Q ss_pred eccCCCCe---EEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 712 PLLSSPKK---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 712 ~l~~~~~~---~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.. .... .+........+.|.++ .....-.|++.|.|..|... +..+.+.
T Consensus 405 ~~--~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~~~V~A~n~~G~s~-S~~~~~~ 456 (731)
T 2v5y_A 405 GQ--EQVREEVSWDTENSHPQHTITNL-SPYTNVSVKLILMNPEGRKE-SQELIVQ 456 (731)
T ss_dssp SS--EEEEEEEECCSSCSSCEEEECSC-CSSCEEEEEEEEECSSCEEE-CCCEEEE
T ss_pred CC--CccceeEEEEecCCcceEEECCC-CCCCEEEEEEEEEcCCCCCC-CceEEEE
Confidence 00 0000 0111233446788887 56666777888999999863 5556654
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=167.60 Aligned_cols=266 Identities=15% Similarity=0.198 Sum_probs=102.0
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCe-eEEEEcCeeccceeE-EEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeE
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNI-TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~-i~W~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s 226 (803)
..|++..|.+|+++.|.|.+. .+.|. +.|.-. +..... ........|.|.+++.+ |.|+|++.......+..
T Consensus 4 v~P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~---l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~ 77 (291)
T 1mq8_A 4 VSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETP---LPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAK 77 (291)
T ss_dssp EECSEEEECTTCEEEEEEEEC-CSSCSEEEEECS---SCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEE
T ss_pred EeCCccEEcCCCeEEEEEeCC-CCCCccceEEec---CCCcccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEE
Confidence 345667889999999999996 45555 888531 111111 11123346889998854 46999997543334455
Q ss_pred EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccc
Q psy2776 227 CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAV 306 (803)
Q Consensus 227 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (803)
+.|.|...|...
T Consensus 78 v~l~V~~~P~~v-------------------------------------------------------------------- 89 (291)
T 1mq8_A 78 TFLTVYWTPERV-------------------------------------------------------------------- 89 (291)
T ss_dssp CEEEECBCCSCC--------------------------------------------------------------------
T ss_pred EEEEEecCCCCC--------------------------------------------------------------------
Confidence 667776653111
Q ss_pred cccccCCceeeeccccceeEEEEe--cCCce--eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 307 EFLSKLPSVTLVPHLGDATFQVEL--SSPDI--QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 307 ~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
.+...+ ..+.+|+.++|.|.+ +.|.. +|.|+|+++.+...... ..
T Consensus 90 -~I~~~~--~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~---~~------------------------- 138 (291)
T 1mq8_A 90 -ELAPLP--SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV---GE------------------------- 138 (291)
T ss_dssp -CBCCCC--SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC---BT-------------------------
T ss_pred -EEecCC--ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC---CC-------------------------
Confidence 011111 225679999999999 45543 68999999887642200 00
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
....+|.+.....+|.+.|+|+|.+..+.....
T Consensus 139 -------------------------------------~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~---------- 171 (291)
T 1mq8_A 139 -------------------------------------PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE---------- 171 (291)
T ss_dssp -------------------------------------TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSC----------
T ss_pred -------------------------------------CceEEEEeeeeeccCCceEEEEEEecCCccCCc----------
Confidence 011235555566677779999999875521000
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCC-ccceeeeccccceEEeecceeEEEEEEcCcCCC---
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQ-PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--- 538 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--- 538 (803)
+ +...+....|.|.++|.. +.+.. ...+.+|+.++|+|.+.|+|++
T Consensus 172 -l-----------------------~~~~s~~~~L~V~~~P~~~~~~~~------p~~l~eG~~v~l~C~~~g~~P~~~~ 221 (291)
T 1mq8_A 172 -L-----------------------FENTSAPYQLQTFVLPATPPQLVS------PRVLEVDTQGTVVCSLDGLFPVSEA 221 (291)
T ss_dssp -E-----------------------EEECCCCEECBC-------------------------------------------
T ss_pred -c-----------------------ccccccceEEEEEecCCCCceecC------CcCccCCCeEEEEEEcCCCCCCccc
Confidence 0 000012567788887643 33221 1257889999999999998664
Q ss_pred eeEEeeCCeeecCCCcEEEEecCCeEEEEEeee---ccCc--CeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSV---VRAD--TSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 539 ~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v---~~~d--sG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.|+++|+.+... +..+ +..+.+... .++| .+.|+|.|.|..........|.|...|
T Consensus 222 ~v~w~~~g~~l~~~----~~~~--g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 222 QVHLALGDQRLNPT----VTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEEEECCEecCce----eeec--CCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 58999999988752 1111 223333332 3434 667778888765556667777776644
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=166.74 Aligned_cols=174 Identities=15% Similarity=0.119 Sum_probs=119.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee----------------CCeeecCC---CcEEEEe-cCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK----------------NGAEITDS---KACRIFI-DEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~----------------~g~~i~~~---~~~~~~~-~~~~~~L~i~~v~~~ds 576 (803)
...+.+|+.+.|.|.+.+.+.+.+.|+| ++...... .++.+.. .....+|.|.+++.+|+
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~ 89 (246)
T 4dzb_B 10 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS 89 (246)
T ss_dssp EEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred EEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence 5778999999999999999999999998 33333332 4555543 23467999999999999
Q ss_pred eEEEEEEEcCCCC----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 577 STYTVTATNAAGS----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 577 G~Y~C~a~n~~g~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
|.|.|.|.|..+. ......|.|....
T Consensus 90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------- 119 (246)
T 4dzb_B 90 SFYICSARTSGDFGEQFFGPGTRLTVLEDL-------------------------------------------------- 119 (246)
T ss_dssp EEEEEEECCSSGGGCCEECCCEEEEEESCG--------------------------------------------------
T ss_pred EEEEEEEecCCCCcceEEcCCEEEEEecCC--------------------------------------------------
Confidence 9999999986431 2233345553200
Q ss_pred ccceeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEEEe------
Q psy2776 653 ATTELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIF------ 723 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~------ 723 (803)
....+|.+ +..+....+.+|+.++|.|.+.|.|++ .+.|+++|.++....+.....
T Consensus 120 ---------------~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~ 184 (246)
T 4dzb_B 120 ---------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 184 (246)
T ss_dssp ---------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTT
T ss_pred ---------------CcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCccccccccccccc
Confidence 00113443 333444556779999999999997665 899999999986542211100
Q ss_pred --eCc---eEEEEEecCCCCCC-ceeEEEEEEccCccee
Q psy2776 724 --DGE---NIILELKEADSETD-AGDYKVVATNELGSAT 756 (803)
Q Consensus 724 --~~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~ 756 (803)
++. ...|.|... ..+| +|.|+|.|.|......
T Consensus 185 ~~~g~~~~~s~l~i~~~-~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 185 LNDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp STTCCEEEEEEEEEEHH-HHTCTTCEEEEEEEECCBCTT
T ss_pred CCCCCEEEEEEEEECHH-HhccCCCeEEEEEEecCCCCc
Confidence 222 234888887 4567 9999999999877655
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=139.62 Aligned_cols=94 Identities=16% Similarity=0.298 Sum_probs=85.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC--CeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..||+|...+.+..+.+|+++.|.|.+.|.|.|.+.|+|||.+|..+. ++.+...+...+|.|.++ +.+|+|.|+|.
T Consensus 3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~ 81 (100)
T 3knb_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV-QKQDGGLYTLS 81 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSC-CGGGCEEEEEE
T ss_pred CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCC-CccCCEEEEEE
Confidence 348999999999999999999999999999999999999999997654 577777788889999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|.|.+|.++.++.|.|+
T Consensus 82 a~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 82 LGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEEEE
Confidence 99999999999999885
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=161.27 Aligned_cols=193 Identities=14% Similarity=0.185 Sum_probs=118.8
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.|....+.+|+++.|.|.+ +.|.+.+.|+|++.... ... +......
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~--~~~-~~~~~~~------------------------------ 53 (213)
T 3d9a_L 7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHES--PRL-LIKYASQ------------------------------ 53 (213)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSC--CEE-EEETTTE------------------------------
T ss_pred CCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCC--cEE-EEEEccc------------------------------
Confidence 3555667789999999999 78888999998632110 011 1100000
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
...+ ......+....+...|.|.+++.+|+|.|+|.|.+..+.....
T Consensus 54 --------------~~~~-~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~------------------ 100 (213)
T 3d9a_L 54 --------------SISG-IPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGG------------------ 100 (213)
T ss_dssp --------------ECTT-SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC------------------
T ss_pred --------------cccc-ccccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCC------------------
Confidence 0000 0001111223456689999999999999999999987643321
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAE 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~ 548 (803)
...|.|...+..|.+.+... ...+..|+.+.|.|.+.| .|++ .+.|+|+|..
T Consensus 101 -----------------------~~~l~V~~~~~~p~v~~~~~---~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~ 154 (213)
T 3d9a_L 101 -----------------------GTKLEIKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE 154 (213)
T ss_dssp -----------------------CEEEEECCCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred -----------------------CEEEEEecCCCCceeEeECC---ChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCc
Confidence 22334433222222222111 112236899999999988 5555 8999999998
Q ss_pred ecCCCcE--EEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 549 ITDSKAC--RIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 549 i~~~~~~--~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+..+... ......+ .+.|.|.++..+|+|.|+|.|.|..........+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 155 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred CcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 8765111 1111111 3589999999999999999999987765444443
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=152.53 Aligned_cols=166 Identities=9% Similarity=0.062 Sum_probs=118.7
Q ss_pred eEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
..+..|+++.|+|.+ +.|.| .|.|++.+..+ .+ .........|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ 90 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ 90 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence 578899999999999 88888 99999965444 12 222356789999999999999999999999888888899
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|..+| .+
T Consensus 91 ltV~~~P-----------------------------------------------------------------------~~ 99 (210)
T 1gsm_A 91 LLVYAFP-----------------------------------------------------------------------NQ 99 (210)
T ss_dssp EEEEBCC-----------------------------------------------------------------------SE
T ss_pred EEEEecC-----------------------------------------------------------------------CC
Confidence 9997744 22
Q ss_pred EeccceeEEecCCeEEEEEEEeec-CC----CceEEeeCCeeccCCCCe--EEE------eeC------ceEEEEEecCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKAS-PA----PSIVWFRNNKPLLSSPKK--REI------FDG------ENIILELKEAD 736 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~-p~----~~v~W~~~~~~l~~~~~~--~~~------~~~------~~~~L~i~~v~ 736 (803)
...... .+.+|+.+ |+|.+.|. |. ++|.|+|||.+|...... ... ..+ -.++|.+...
T Consensus 100 ~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~- 176 (210)
T 1gsm_A 100 LTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPL- 176 (210)
T ss_dssp EEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCC-
T ss_pred cEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCC-
Confidence 221111 45567888 99999986 74 489999999999543210 110 001 1234555565
Q ss_pred CCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 737 SETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
..+|.+.|+|.|.+.+-.....-...+
T Consensus 177 ~~D~~~~~tC~a~~~L~~~~~~~~~~~ 203 (210)
T 1gsm_A 177 GTPVPPALYCQATMRLPGLELSHRQAI 203 (210)
T ss_dssp CSSCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cccCCceEEEEEEeeCCCCcccccccC
Confidence 556668999999998865554444443
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=160.67 Aligned_cols=86 Identities=15% Similarity=0.339 Sum_probs=63.6
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec-------------cceeE--EEecCeeEEEEecCCCCcc
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI-------------KGRNI--TYENNVARFTVVNCSESSE 209 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~--~~~~~~~~L~i~~v~~~d~ 209 (803)
+...+ .+.+.+|++++|.|.+.+.|.+.+.|+|.. ... ...++ ........|.|.+++.+|+
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (213)
T 3mj8_L 4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE 82 (213)
T ss_dssp BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence 44445 678889999999999999999999999832 111 01122 2244567899999999999
Q ss_pred eEEEEEEEcCCcC---eeeEEEEEEee
Q psy2776 210 GRYTCKATNEAGT---AETSCTLLVQG 233 (803)
Q Consensus 210 G~Y~C~a~n~~g~---~~~s~~l~V~~ 233 (803)
|.|+|.+.|..+. ....+.|.|..
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 109 (213)
T 3mj8_L 83 ADYYCQSWDGTNSAWVFGSGTKVTVLG 109 (213)
T ss_dssp EEEEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred EEEEEEeccCCcceeEEcCceEEEEeC
Confidence 9999999999872 33456677764
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-18 Score=170.07 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=118.7
Q ss_pred ceEEeecceeEEEEEEcCcCC-C-eeEEeeCC--eee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-P-EISWMKNG--AEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~-~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+.+.+. + .+.|+|++ ..+ ....++.+........|.|.+++.+|+|.|+
T Consensus 28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 107 (234)
T 2j6e_L 28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYY 107 (234)
T ss_dssp CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEE
T ss_pred cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEE
Confidence 456788999999999988654 4 79999863 221 0124555555556679999999999999999
Q ss_pred EEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 581 VTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 581 C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|.|.|..+. ....+.|.|...
T Consensus 108 C~~~~~~~~~~~~~~~~~l~V~~~-------------------------------------------------------- 131 (234)
T 2j6e_L 108 CATWDDSLSAVIFGGGTKLTVLGQ-------------------------------------------------------- 131 (234)
T ss_dssp EEEEETTTTEEEECCCBCCCBCCC--------------------------------------------------------
T ss_pred EEEEcCCcceeEecCCEEEEEecC--------------------------------------------------------
Confidence 999998773 111223333211
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeCCeeccCCCCeE---EEeeC---ceEE
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNNKPLLSSPKKR---EIFDG---ENII 729 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~~~l~~~~~~~---~~~~~---~~~~ 729 (803)
+..+|.+...+....+.+|+.++|.|.+.|.++ +.+.|++||.++..+.... ...++ ..+.
T Consensus 132 -----------~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~ 200 (234)
T 2j6e_L 132 -----------PKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSY 200 (234)
T ss_dssp -----------CCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEE
T ss_pred -----------CCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEE
Confidence 112455544333333346889999999998644 3899999999986542110 00111 2357
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
|.|.++ ..+|+|.|+|.|.|..+....++
T Consensus 201 L~i~~~-~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 201 LSLTPE-QWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp ECCCGG-GTTTSCCEEEEEEBTTBCCCEEE
T ss_pred EEECHH-HcCCCCeEEEEEEeCCCceEEec
Confidence 999999 68999999999999988755444
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=157.00 Aligned_cols=155 Identities=16% Similarity=0.261 Sum_probs=112.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--Cc--------EEEEecCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KA--------CRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--~~--------~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
...+.+|++++|.|.+.+ |.+.+.|+|++..+..- .. -++.....+++|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 466788999999999854 88999999988754311 00 01222334568999999999999999999998
Q ss_pred CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccC
Q psy2776 587 AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL 666 (803)
Q Consensus 587 ~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~ 666 (803)
.| ...+.|.|..++
T Consensus 83 ~~--~~~~~L~V~~~~---------------------------------------------------------------- 96 (171)
T 1ccz_A 83 TD--TMKFFLYVLEMV---------------------------------------------------------------- 96 (171)
T ss_dssp CS--CEEEEEEEECCC----------------------------------------------------------------
T ss_pred CC--cEEEEEEEECcC----------------------------------------------------------------
Confidence 87 677777775532
Q ss_pred CCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 667 ~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
..|.+...... ..|.|.+.|.|.|.+.|+++|..+....+ ..|.+.+ ..|+|.|+|
T Consensus 97 ----~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~~~~---------~~l~~~~---~~~~g~Y~C 152 (171)
T 1ccz_A 97 ----SKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQW---TNLRAPFKC 152 (171)
T ss_dssp ----CCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEEESS---------SEEEEEC---SCCSSCEEE
T ss_pred ----CCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcCCcc---------eEEEEec---cCCCceEEE
Confidence 13444322111 27999999999999999999998753322 1344443 579999999
Q ss_pred EEEccCcceeeeEEEE
Q psy2776 747 VATNELGSATHGARVT 762 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~ 762 (803)
.|+|.+|..+..+.|.
T Consensus 153 ~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 153 KAVNRVSQESEMEVVN 168 (171)
T ss_dssp EEEETTEEEEEEECCC
T ss_pred EEEcccCcccceeEEe
Confidence 9999999988766553
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.7e-17 Score=159.63 Aligned_cols=173 Identities=13% Similarity=0.127 Sum_probs=118.6
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---e-c--C-------------CCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---I-T--D-------------SKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i-~--~-------------~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|+++.|.|.+.+.+ .+.+.|+|++ .. + . . ..++.+..+ .+...|.|.++
T Consensus 9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (220)
T 1pz5_B 9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL 88 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence 46788999999999999876 6899999853 21 1 0 0 245555432 34569999999
Q ss_pred ccCcCeEEEEEEEcCCCCe-E--EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 572 VRADTSTYTVTATNAAGST-S--LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~-s--~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+.+|+|.|.|.|.|..+.. . ..+.|.|...
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------------- 121 (220)
T 1pz5_B 89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSA----------------------------------------------- 121 (220)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSS-----------------------------------------------
T ss_pred CHHHCEEEEEEEecCCcccceECCCEEEEEccC-----------------------------------------------
Confidence 9999999999999976432 1 2345555321
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeecc--CCCCeEEEee
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLL--SSPKKREIFD 724 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~--~~~~~~~~~~ 724 (803)
...+|.+...+....+.+|+.++|.|.+.|. |.| .+.|++++..+. ...... ..
T Consensus 122 --------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~~ 179 (220)
T 1pz5_B 122 --------------------TTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVL--QS 179 (220)
T ss_dssp --------------------CCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE--ET
T ss_pred --------------------CCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcc--cC
Confidence 1125555544433456789999999999998 988 999999887421 011110 11
Q ss_pred C---ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 725 G---ENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 725 ~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+ ....|.|..+ ..+| |.|+|.|.|..|....++.
T Consensus 180 ~~~~~~s~L~i~~~-~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 180 GFYSLSSLVTVPSS-TWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp TEEEEEEEEEECGG-GTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CeEEEEEEEEEcch-hcCC-ceEEEEEEECCccEeeeec
Confidence 1 2456899988 5555 9999999999998766543
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=164.94 Aligned_cols=202 Identities=12% Similarity=0.146 Sum_probs=126.2
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEe--cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFI--DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~--~~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|++ ..+. ...++.+.. .....+|.|.++..
T Consensus 31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 110 (291)
T 2gki_A 31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS 110 (291)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999999877 5789999853 1110 013444433 23457899999999
Q ss_pred CcCeEEEEEEEcCC-CCeE----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 574 ADTSTYTVTATNAA-GSTS----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~-g~~s----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+|+|.|.|.+.|.. |... ....|.|..+. + -..|
T Consensus 111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~----------------------------------~-------~~~~ 149 (291)
T 2gki_A 111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRG----------------------------------G-------GGSG 149 (291)
T ss_dssp GGCEEEEEEEECGGGTTCEEEECCCEEEEECC------------------------------------------------
T ss_pred HHCEEEEEEEeccccccccceeCCCcEEEEecCC----------------------------------c-------cccc
Confidence 99999999999874 2211 12345443300 0 0000
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC------ceEEeeCC--eec---c---
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP------SIVWFRNN--KPL---L--- 714 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~------~v~W~~~~--~~l---~--- 714 (803)
.. .+.....++.+...+....+.+|++++|.|.+.+.|.+ .+.|+|++ ..+ .
T Consensus 150 ~~--------------~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~ 215 (291)
T 2gki_A 150 GG--------------GSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWA 215 (291)
T ss_dssp -----------------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETT
T ss_pred cc--------------cCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEc
Confidence 00 00001114455555667789999999999999998876 89999963 211 1
Q ss_pred ------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee-eeEEEEEEeeccCCCCCc
Q psy2776 715 ------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 715 ------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~pp~~~ 774 (803)
...++.+..++...+|.|.++ +.+|+|.|+|.|.|.....- .-..|.|+..+...|.+.
T Consensus 216 ~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~~~~~~~~ 281 (291)
T 2gki_A 216 STRESGVPDRFTGSGSGTDFTLTISSV-QAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHHHHGLVPR 281 (291)
T ss_dssp TEECTTCCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEEEETTEEEECCCEEEEEECC--------
T ss_pred ccCCCCcCCCEEEEecCCEEEEEECCC-CHHHCEEEEEEEccCCceEEcCCEEEEEEeeEcCCCcee
Confidence 145666666667789999999 79999999999999543221 233566654433344443
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=162.50 Aligned_cols=137 Identities=19% Similarity=0.332 Sum_probs=96.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+.. .... .+.|.|.
T Consensus 70 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~------------------------------------------~~~l~V~ 106 (222)
T 4i0k_A 70 GNASLRLQRVRVTDEGSYTCFVSIQD-FDSA------------------------------------------AVSLQVA 106 (222)
T ss_dssp TBCCEEECSCCGGGCSCEEEEEEECC-CCCC------------------------------------------CCCCCCC
T ss_pred CeEEEEECCcccccCEEEEEEEEeCC-CceE------------------------------------------EEEEEEE
Confidence 35679999999999999999999752 2221 4455565
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEee-CCeeecCCCcEEEEecCC--eEEEEEeeeccCcC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMK-NGAEITDSKACRIFIDEE--TSTIAIYSVVRADT 576 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~-~g~~i~~~~~~~~~~~~~--~~~L~i~~v~~~ds 576 (803)
.++..|.+.... ...+.+|+.+.|.|.+ .|.|.+.+.|++ ++..+............+ ...|.|.++..+|+
T Consensus 107 ~~~~~p~i~~~~----~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~ 182 (222)
T 4i0k_A 107 APYSKPSMTLEP----NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGAN 182 (222)
T ss_dssp BCCCCCEEECCC---------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTT
T ss_pred cCCCCCcEEeCC----CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCC
Confidence 555444433211 2457789999999999 889999999999 555554433222222222 24689999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeE
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQ 604 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~ 604 (803)
|.|+|.|.|..|....++.|.|..+|+.
T Consensus 183 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 183 GTYSCLVRNPVLQQDAHGSVTITGQPLT 210 (222)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCC----
T ss_pred CEEEEEEECCCCCCceEEEEEEeCCccc
Confidence 9999999999999999999999988843
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=160.91 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=121.4
Q ss_pred ccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
+++.+...... .+.+|++++|.|.+..+...+.|+|+|..+..... .
T Consensus 6 ~kP~i~~~P~~--~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~------~------------------------- 52 (242)
T 1p6f_A 6 PKPFIWAEPHF--MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP------K------------------------- 52 (242)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC------S-------------------------
T ss_pred CCCEEEeeCCC--ccCCCCcEEEEEeeCCCCcEEEEEECCCccccccc------c-------------------------
Confidence 34444443333 66789999999999555678999999876542100 0
Q ss_pred ccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeE
Q psy2776 384 KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463 (803)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~ 463 (803)
.........|.|.+++.+|+|.|+|.+.+..+....+.
T Consensus 53 --------------------------------~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~---------- 90 (242)
T 1p6f_A 53 --------------------------------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN---------- 90 (242)
T ss_dssp --------------------------------SCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCC----------
T ss_pred --------------------------------ccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCc----------
Confidence 00011234588999999999999999987644332211
Q ss_pred EeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEe
Q psy2776 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWM 543 (803)
Q Consensus 464 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~ 543 (803)
.+.|.|...+..|.+. ..+ ...+.+|++++|.|.+.+. .+.+.|+
T Consensus 91 ------------------------------~~~L~V~~~~~~P~i~--~~p--~~~v~~G~~vtL~C~~~~~-~~~~~w~ 135 (242)
T 1p6f_A 91 ------------------------------LLDLVVTEMYDTPTLS--VHP--GPEVISGEKVTFYCRLDTA-TSMFLLL 135 (242)
T ss_dssp ------------------------------CEEEEEECCSCCCEEE--EES--CSEEETTCEEEEEEECTTS-CSEEEEE
T ss_pred ------------------------------ceEEEeecccCCCceE--ccC--CCccCCCCcEEEEEecCCC-CCEEEEE
Confidence 2333343322122221 111 2457899999999998764 4699999
Q ss_pred eCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC---CCeEEEEEEEEeee
Q psy2776 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA---GSTSLDLSLQVLGY 601 (803)
Q Consensus 544 ~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~---g~~s~s~~l~V~~~ 601 (803)
|+|..+.. ..........|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.+.
T Consensus 136 k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 136 KEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp ECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred ECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 99976653 12234467899999999999999999999864 34566677777663
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=161.83 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=118.9
Q ss_pred ceEEeecceeEEEEEEcCcC------CCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP------RPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p------~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+ |..+. ...++.+........|.|.++..+|+
T Consensus 14 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds 93 (264)
T 2gjj_A 14 SLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDL 93 (264)
T ss_dssp EEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred eEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHC
Confidence 57789999999999999887 678999985 22111 13466655555567999999999999
Q ss_pred eEEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 577 STYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 577 G~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.|.|.|..+. ......|.|..+|.... . +.+...
T Consensus 94 G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~---------------------------------------~-~~~~~~-- 131 (264)
T 2gjj_A 94 AVYYCQQYSNYPWTFGGGTRLEIKRGGGGSG---------------------------------------G-GGSGGG-- 131 (264)
T ss_dssp EEEEEEECSSSSCEECCCEEEEEECC------------------------------------------------------
T ss_pred EEEEEEEecCCccEecCCEEEEEEcCCcccc---------------------------------------c-cccccc--
Confidence 9999999987543 22334666655320000 0 000000
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeCC--ee---cc--------------
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNN--KP---LL-------------- 714 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~--~~---l~-------------- 714 (803)
......++..+..+....+.+|++++|.|.+.+.|. +.+.|++++ .. +.
T Consensus 132 ----------~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~ 201 (264)
T 2gjj_A 132 ----------GSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQK 201 (264)
T ss_dssp -----------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGG
T ss_pred ----------ccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcc
Confidence 000000122222333457889999999999998874 789999963 21 11
Q ss_pred CCCCeEEEee--CceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 715 SSPKKREIFD--GENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 715 ~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
...++.+..+ .....|.|.++ +.+|+|.|.|.|.|.
T Consensus 202 ~~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 202 FKNKAAFTVDTSSSTAFMQLNSL-TSEDSADYYCVRSGN 239 (264)
T ss_dssp GTTTEEEEEETTTTEEEEEECSC-CGGGCEEEEEEEECS
T ss_pred cCCceEEEEcCCCCEEEEEECcC-CcccCEEEEEEEecC
Confidence 0345554432 35678999999 799999999999995
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=158.42 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=130.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ .++.+......+.|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus 27 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 106 (215)
T 3mtr_A 27 AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF 106 (215)
T ss_dssp EEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEE
Confidence 477889999999999999999999999999998876 456666666789999999999999999999999999999998
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|..+| .+|.
T Consensus 107 ~l~v~~~P--------------------------------------------------------------------~~p~ 118 (215)
T 3mtr_A 107 ILVQADTP--------------------------------------------------------------------SSPS 118 (215)
T ss_dssp EEEECCCC--------------------------------------------------------------------CCCE
T ss_pred EEEECCCC--------------------------------------------------------------------CCCc
Confidence 88886644 1333
Q ss_pred eEeccceeEEecCCeEEEEEEEe----ecCCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVK----ASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~----g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
.... ...+..+.|.|... |.|.. .+.|++++........+.+........|.|.++ ...|.|.|+|.|
T Consensus 119 ~~~~-----~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L-~~~~~y~~~~~A 192 (215)
T 3mtr_A 119 IDQV-----EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGL-KPETTYAVRLAA 192 (215)
T ss_dssp EEEE-----EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECC-CTTCEEEEEEEE
T ss_pred ceEE-----EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCC-CCCCEEEEEEEE
Confidence 2221 23467889999742 23433 477888765421100000000111257999999 789999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|.+|....+..+.|+
T Consensus 193 ~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 193 LNGKGLGEISAASEFK 208 (215)
T ss_dssp EESSCBCCCCCCEEEE
T ss_pred EeCCcccCcccceeeE
Confidence 9999999888777775
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=157.51 Aligned_cols=186 Identities=13% Similarity=0.199 Sum_probs=114.9
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecC--eeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKG--KEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g--~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
|....+.+|++++|.|.+ +.|.+.+.|+|++ ..+ .. +......
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~----~~-~~~~~~~----------------------------- 52 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQP----KL-LIYKASN----------------------------- 52 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCC----EE-EEETTTE-----------------------------
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCe----EE-EEEcccc-----------------------------
Confidence 666778889999999999 7778899999852 221 11 1100000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
...+ ......+...++...|.|.+++.+|+|.|+|.|.+..+.....
T Consensus 53 ---------------~~~~-~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~----------------- 99 (210)
T 1lk3_L 53 ---------------LASG-VPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGA----------------- 99 (210)
T ss_dssp ---------------ECTT-CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC-----------------
T ss_pred ---------------ccCC-ccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCC-----------------
Confidence 0000 0000111223456689999999999999999999876533221
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCe
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGA 547 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~ 547 (803)
...|.|...+..|.+.+... ...+..|+.+.|.|.+.|. |++ .+.|+|+|.
T Consensus 100 ------------------------~~~l~V~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~ 152 (210)
T 1lk3_L 100 ------------------------GTKLELKRADAAPTVSIFPP---STEQLATGGASVVCLMNNFYPRDISVKWKIDGT 152 (210)
T ss_dssp ------------------------CEEEEECCCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ------------------------CEEEEEcCCCcCCeEEEECC---chhhccCCcEEEEEEEEeEeCCceEEEEEeCCc
Confidence 12333333222222222111 1112368999999999974 443 899999999
Q ss_pred eecCC-Cc-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEE
Q psy2776 548 EITDS-KA-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 548 ~i~~~-~~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
.+..+ .. .......+ .+.|.|.++..+|+|.|+|.|.|.......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (210)
T 1lk3_L 153 ERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPV 204 (210)
T ss_dssp ECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred cCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCee
Confidence 88765 11 11111111 248999999999999999999998765433
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=159.41 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=115.1
Q ss_pred ceEEeecceeEEEEEEcCcCC----CeeEEeeCC--eee----c------------CCCcEEEEec--CCeEEEEEeeec
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR----PEISWMKNG--AEI----T------------DSKACRIFID--EETSTIAIYSVV 572 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~----~~v~W~~~g--~~i----~------------~~~~~~~~~~--~~~~~L~i~~v~ 572 (803)
...+.+|++++|.|.+.+.|. +.+.|+|++ ..+ . ...++.+..+ .....|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 88 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD 88 (228)
T ss_dssp CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence 467889999999999998875 889999852 211 0 0235555432 245799999999
Q ss_pred cCcCeEEEEEEEcCCCC-----e----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEE
Q psy2776 573 RADTSTYTVTATNAAGS-----T----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFA 643 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~-----~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 643 (803)
.+|+|.|.|.+.|..|. . ...+.|.|...
T Consensus 89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~------------------------------------------ 126 (228)
T 3bae_H 89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA------------------------------------------ 126 (228)
T ss_dssp GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC------------------------------------------
T ss_pred cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC------------------------------------------
Confidence 99999999999987651 1 12245555321
Q ss_pred ecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEE
Q psy2776 644 ENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE 721 (803)
Q Consensus 644 ~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~ 721 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+.......+
T Consensus 127 -------------------------~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~ 181 (228)
T 3bae_H 127 -------------------------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAV 181 (228)
T ss_dssp -------------------------CCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEE
T ss_pred -------------------------CCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCce
Confidence 1124555543333346789999999999987 887 9999999876421111111
Q ss_pred EeeC---ceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 722 IFDG---ENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 722 ~~~~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...+ ....|.|..+ ..+| |.|+|.|.|..|......
T Consensus 182 ~~~~~~~~~s~L~i~~~-~~d~-g~YtC~~~n~~~~~~~~~ 220 (228)
T 3bae_H 182 LQSDLYTLSSSVTVTSS-TWPS-ESITCNVAHPASSTKVDK 220 (228)
T ss_dssp EETTEEEEEEEEEEETT-TTTT-SCCEEEEEEGGGTEEEEE
T ss_pred eCCCcEEEEEEEEEEhh-hcCC-CcEEEEEEECCCCCCEEE
Confidence 1112 2356899988 5555 999999999999876443
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=159.85 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=115.1
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 46789999999999999876 6789999853 2110 1245555443 3467999999999
Q ss_pred CcCeEEEEEEEcCCC-----C---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 574 ADTSTYTVTATNAAG-----S---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-----~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
+|+|.|.|.|.|..| . ....+.|.|...+
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~------------------------------------------- 125 (225)
T 1op3_H 89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS------------------------------------------- 125 (225)
T ss_dssp GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS-------------------------------------------
T ss_pred hhCEEEEEEEecCCCccccccceeecCCEEEecccCC-------------------------------------------
Confidence 999999999999865 1 1123455554310
Q ss_pred CCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCC-CCeEEE
Q psy2776 646 SVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS-PKKREI 722 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~-~~~~~~ 722 (803)
..+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+... ......
T Consensus 126 ------------------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~ 181 (225)
T 1op3_H 126 ------------------------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQ 181 (225)
T ss_dssp ------------------------CBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEEC
T ss_pred ------------------------CcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeC
Confidence 113444332222235679999999999987 777 99999998764211 010111
Q ss_pred eeCc---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 723 FDGE---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++. .+.|.|..+ ..+| |.|+|.|.|..+...
T Consensus 182 ~~g~~~~~s~L~i~~~-~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 182 SSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp TTSCEEEEEEEEEEGG-GTTC-CCCCEEEEEGGGTEE
T ss_pred CCCCEEEEEEEEEech-hcCC-CcEEEEEEcCCCCcc
Confidence 1222 346899988 5677 999999999877644
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-16 Score=158.08 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=92.1
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|+|.|.|..+...... ...|.|
T Consensus 78 ~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~----------------------------------------~~~l~V 117 (247)
T 2ghw_B 78 KNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQ----------------------------------------GTLVTV 117 (247)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTEEEEECC----------------------------------------CEEEEE
T ss_pred CCEEEEEECcCCHHHCEEEEEeeeccCCccccCC----------------------------------------ceEEEE
Confidence 3456899999999999999999998733222211 123333
Q ss_pred CCCCC----------CccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEee--CCeeec------------CCCcE
Q psy2776 500 QSPPQ----------QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEIT------------DSKAC 555 (803)
Q Consensus 500 ~~~p~----------~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~------------~~~~~ 555 (803)
..+|. .... .+........+.+|++++|.|.+.+.|.+.+.|+| +|..+. ...++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~ 196 (247)
T 2ghw_B 118 SSGGGGSGGGGSGGGGSET-TLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRF 196 (247)
T ss_dssp CSCC------------CCC-CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTE
T ss_pred ecccccccccccCCCCcce-EEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCE
Confidence 33211 0001 11112234668899999999999999999999999 555331 12455
Q ss_pred EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEEEEe
Q psy2776 556 RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVL 599 (803)
Q Consensus 556 ~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l~V~ 599 (803)
.+.......+|.|.++..+|+|.|+|.|.|..+.. .....|.|.
T Consensus 197 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 197 SGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 55545566789999999999999999999864332 233455554
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-16 Score=153.26 Aligned_cols=175 Identities=13% Similarity=0.137 Sum_probs=117.4
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec--------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT--------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~--------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|+.+.|.|.+.+.+ .+.+.|+|+. .. +. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 88 (223)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence 46788999999999999876 4789999853 21 10 1135555443 2357999999999
Q ss_pred CcCeEEEEEEEcCCCC------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 574 ADTSTYTVTATNAAGS------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
+|+|.|.|.+.|..|. ....+.|.|...
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~---------------------------------------------- 122 (223)
T 1dee_B 89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSG---------------------------------------------- 122 (223)
T ss_dssp GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSS----------------------------------------------
T ss_pred HHCEEEEEEEeccccCcccceeecCcEEEEEccC----------------------------------------------
Confidence 9999999999987541 112235555321
Q ss_pred CCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEee-CCeeccCCCCe-EEEe
Q psy2776 648 GLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFR-NNKPLLSSPKK-REIF 723 (803)
Q Consensus 648 g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~-~~~~l~~~~~~-~~~~ 723 (803)
+..+|.+........+.+|+.++|.|.+.|. |.| .+.|++ +|..+.....+ ....
T Consensus 123 ---------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~ 181 (223)
T 1dee_B 123 ---------------------SASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLR 181 (223)
T ss_dssp ---------------------CCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEE
T ss_pred ---------------------CCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCcccc
Confidence 1124555432222345789999999999987 877 999999 88887540000 0001
Q ss_pred eCc---eEEEEEecCCCC--CCceeEEEEEEccCcceeeeE
Q psy2776 724 DGE---NIILELKEADSE--TDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 724 ~~~---~~~L~i~~v~~~--~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
++. ...|.|... .. +|.|.|+|.|.|..|.....+
T Consensus 182 ~~~~~~~s~L~i~~~-~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 182 GGKYAATSQVLLPSK-DVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp TTEEEEEEEEEEECT-TTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEEEEcHH-HhccCCCCEEEEEEEeCCCCCcccc
Confidence 121 345888776 44 789999999999999876544
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=161.63 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=59.3
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc-EEEEecCCeEEEEEeee-ccCcCeEEEEEEEcCCCC-eEEEEEEE
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA-CRIFIDEETSTIAIYSV-VRADTSTYTVTATNAAGS-TSLDLSLQ 597 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~-~~~~~~~~~~~L~i~~v-~~~dsG~Y~C~a~n~~g~-~s~s~~l~ 597 (803)
.+|+++.|.|. |.|.|.+.|+|+|..+....+ ..+.. .+..|.|.++ ..+|+|.|+|.|.|..|. .+..+.|.
T Consensus 126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~ 201 (204)
T 1sy6_A 126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS--DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR 201 (204)
T ss_dssp EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE--ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec--CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence 38999999999 889999999999998865421 11111 2468999999 999999999999999997 35666666
Q ss_pred Ee
Q psy2776 598 VL 599 (803)
Q Consensus 598 V~ 599 (803)
|.
T Consensus 202 ~~ 203 (204)
T 1sy6_A 202 AR 203 (204)
T ss_dssp EC
T ss_pred Ee
Confidence 53
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=157.44 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=118.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec--------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT--------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~--------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. .. +. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (220)
T 2fbj_H 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence 46788999999999999876 5789999853 21 10 1245555543 3457999999999
Q ss_pred CcCeEEEEEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 574 ADTSTYTVTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
+|+|.|.|.+.|..+. ....+.|.|...+
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------------------------------------------------ 120 (220)
T 2fbj_H 89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAES------------------------------------------------ 120 (220)
T ss_dssp GGCEEEEEEEEETTTEEEEECCCEEEEECSSC------------------------------------------------
T ss_pred hhCEEEEEEEeccccccceecCCEEEEecCCC------------------------------------------------
Confidence 9999999999987542 1123455554311
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC--CceEEeeCCeeccC-CCCeEEEeeCc
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA--PSIVWFRNNKPLLS-SPKKREIFDGE 726 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~--~~v~W~~~~~~l~~-~~~~~~~~~~~ 726 (803)
..+|.+...+ ...+.+|+.++|.|.+.|. |. +.|.|++++..+.. ........++.
T Consensus 121 -------------------~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~ 180 (220)
T 2fbj_H 121 -------------------ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGR 180 (220)
T ss_dssp -------------------CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSC
T ss_pred -------------------CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCC
Confidence 1255555443 3446789999999999987 76 79999999877521 11111111222
Q ss_pred ---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 727 ---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 727 ---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
...|.|... ..+|.|.|+|.|.|..|...
T Consensus 181 ~~~~s~L~i~~~-~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 181 YTMSNQLTLPAV-ECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEEEEEECGG-GSCTTCEEEEEEEETTSCCE
T ss_pred EEEEEEEEECHH-HcCCCCeEEEEEEcCCCceE
Confidence 235889888 57899999999999999864
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-17 Score=153.94 Aligned_cols=153 Identities=12% Similarity=0.239 Sum_probs=110.2
Q ss_pred ceEEeecceeEEEEEEcC-cCCCeeEEeeC-Ceeec------------CC--CcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FPRPEISWMKN-GAEIT------------DS--KACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~-g~~i~------------~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|++++|.|.+.+ .+.+.+.|+|+ +..+. .. .++.+ +..+..|.|.+++.+|+|.|+
T Consensus 8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEEE
T ss_pred eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEEE
Confidence 577899999999999754 34689999994 33221 11 23332 235578999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 581 VTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 581 C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
|.+.+.. .....+.|.|..++
T Consensus 86 C~v~~~~-~~~~~~~L~V~~~~---------------------------------------------------------- 106 (180)
T 2dru_A 86 MRMLHET-EDQWKITMEVYEMV---------------------------------------------------------- 106 (180)
T ss_dssp EEEESSS-EEEEEEEEEEECCC----------------------------------------------------------
T ss_pred EEEEcCC-eEEEEEEEEEECCC----------------------------------------------------------
Confidence 9998876 56677777775522
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCC
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~ 739 (803)
..|.+.. .++.++|.|.+ .| |.|.+.|++++.++. .. ...+|.+.. .+
T Consensus 107 ----------~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-------~~--~~~~l~~~~---~~ 155 (180)
T 2dru_A 107 ----------SKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLR-------SL--RQKTMSYQW---TN 155 (180)
T ss_dssp ----------CCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEE-------EE--SSSEEEEEC---SC
T ss_pred ----------CCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECc-------CC--CCCEEEEEE---hh
Confidence 1344332 24569999999 66 999999999999874 11 122455532 58
Q ss_pred CceeEEEEEEccCcceeeeEEE
Q psy2776 740 DAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
|+|.|+|.|.|.+|..+..+.+
T Consensus 156 d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 156 LRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp CSSCEEEEEEETTEEEEEEECC
T ss_pred cCccEEEEEecCcCccccceeE
Confidence 9999999999999998765543
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=161.55 Aligned_cols=85 Identities=15% Similarity=0.039 Sum_probs=62.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee--CCeeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.+.+.|.+.+.|+| +|..+. ...++.+........|.|.++..+|+|.|+|.
T Consensus 148 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 227 (257)
T 1f3r_B 148 LLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCY 227 (257)
T ss_dssp EECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEE
T ss_pred EEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEE
Confidence 4567889999999999999989999999 555331 12455554445567999999999999999999
Q ss_pred EEcCCCCeEEEEEEEEeee
Q psy2776 583 ATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 583 a~n~~g~~s~s~~l~V~~~ 601 (803)
|.|..........|.|...
T Consensus 228 a~n~~~~~g~gt~l~V~~~ 246 (257)
T 1f3r_B 228 QYNNGYTFGAGTKLELKAA 246 (257)
T ss_dssp EESSSEEECCCCEECCSSS
T ss_pred EeCCCCeECCCEEEEEeCC
Confidence 9997511222345555543
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-18 Score=170.57 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=96.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--eee---c---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AEI---T---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~i---~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|++ ..+ . ...++.+.......+|.|.+++.+|+|.|.|.
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 111 (233)
T 3bqu_C 32 SLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCL 111 (233)
T ss_dssp BC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEE
T ss_pred eEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEE
Confidence 567889999999999999888899999853 211 0 01233222222345899999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|..
T Consensus 112 ~~~~~~~~~~~~~~l~V~~------------------------------------------------------------- 130 (233)
T 3bqu_C 112 QSDNLPYTFGGGTNLEIKR------------------------------------------------------------- 130 (233)
T ss_dssp ECSSSSCCBCCCCBC---C-------------------------------------------------------------
T ss_pred EecCCceeecCCEEEEEeC-------------------------------------------------------------
Confidence 99876532 1122333322
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC-CC-ceEEeeCCeeccCCCCeE--EE--eeC---ceEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP-AP-SIVWFRNNKPLLSSPKKR--EI--FDG---ENIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~~-~v~W~~~~~~l~~~~~~~--~~--~~~---~~~~L~i 732 (803)
...+|.+...+....+.+|+.++|.|.+.|.+ .+ .+.|+|+|.++..+.... .. .++ ....|.|
T Consensus 131 -------~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 203 (233)
T 3bqu_C 131 -------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 203 (233)
T ss_dssp -------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEE
T ss_pred -------CCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEE
Confidence 11256555544333344799999999999864 43 799999999876541110 01 111 2356889
Q ss_pred ecCCCCCCceeEEEEEEccCcce
Q psy2776 733 KEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..+ ..+|+|.|+|.|.|.....
T Consensus 204 ~~~-~~~d~g~Y~C~a~n~~~~~ 225 (233)
T 3bqu_C 204 TKD-EYERHNSYTCEATHKTSTS 225 (233)
T ss_dssp EHH-HHHTCCCEEEEEEEC---C
T ss_pred CHH-HhCCCCCEEEEEEeCCCCc
Confidence 998 5789999999999976553
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=160.69 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=116.9
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|++ .. +. ...++.+........|.|.++..+|+|
T Consensus 24 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG 103 (268)
T 1x9q_A 24 SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLG 103 (268)
T ss_dssp EECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCE
Confidence 46678999999999999887 4889999853 21 11 134566554556679999999999999
Q ss_pred EEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|.|.|.|..+. ......|.|...+..
T Consensus 104 ~Y~C~~~~~~~~~~~~~~~L~V~~~~~~---------------------------------------------------- 131 (268)
T 1x9q_A 104 VYFCSQSTHVPWTFGGGTKLEIKSSADD---------------------------------------------------- 131 (268)
T ss_dssp EEEEEECSSSSCEECCCEEEC-----------------------------------------------------------
T ss_pred EEEEEEecCCCceEcCCEEEEEccCccC----------------------------------------------------
Confidence 999999987543 223345555442200
Q ss_pred eeeeeecccCCCCCCCC--------------eeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeC--Ceec-----
Q psy2776 657 LVALATHATLGSPGQAP--------------LFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRN--NKPL----- 713 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p--------------~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--~~~l----- 713 (803)
..+..+| .++..+....+.+|++++|.|.+.|.|. +.+.|+++ +..+
T Consensus 132 ----------~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~ 201 (268)
T 1x9q_A 132 ----------AKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQ 201 (268)
T ss_dssp ---------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEE
T ss_pred ----------CCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEE
Confidence 0000011 1333445678999999999999998864 78999985 2221
Q ss_pred --------------cCCCCeEEEeeC--ceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 714 --------------LSSPKKREIFDG--ENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 714 --------------~~~~~~~~~~~~--~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
....++.+..+. ....|.|.++ +.+|+|.|+|.|.|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 202 FRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNL-RVEDTGIYYCTGASY 254 (268)
T ss_dssp ECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSC-CGGGCEEEEEEEEET
T ss_pred EcccccccccccCCccCCeEEEEEeCCCCEEEEEECCC-CHHHCEEEEEEEccC
Confidence 123466655442 4678999999 799999999999985
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=154.01 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=81.8
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|+|.+++.+|+|.|+|.+.+..+.... .+.|.|..
T Consensus 69 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~------------------------------------------~~~L~V~~ 106 (193)
T 2if7_A 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLS------------------------------------------SYTLRILR 106 (193)
T ss_dssp TCCEEECSCCGGGCEEEEEEEECSSCEEEE------------------------------------------EEEEEEEC
T ss_pred CeEEEECCCCcccCceEEEEEEecCCCeEE------------------------------------------EEEEEEEc
Confidence 456999999999999999999998776443 34455554
Q ss_pred CCCCccceeeeccccceEEeecc-eeEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccC-cCeE
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKS-QWKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA-DTST 578 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~-~v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~-dsG~ 578 (803)
+|..|.+... ...+..|. .+.|.|.+.|. |.|.+.|+++|..+..+ ..|.|.....+ |+|.
T Consensus 107 ~~~~p~i~~~-----~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~-----------~~l~i~~~~~~~d~G~ 170 (193)
T 2if7_A 107 QLRNIQVTNH-----SQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ-----------PNLTVSWDPRISSEQD 170 (193)
T ss_dssp CCEEEEEEEC-----CC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS-----------SEEEEEECTTTCSCCE
T ss_pred cCCCCeEecC-----ceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC-----------CeEEEEeccCcCCCCc
Confidence 4433333211 11223465 89999999985 47899999999876432 34666555554 8999
Q ss_pred EEEEEEcCCCCeEEEEE
Q psy2776 579 YTVTATNAAGSTSLDLS 595 (803)
Q Consensus 579 Y~C~a~n~~g~~s~s~~ 595 (803)
|+|.|.|..|..+..+.
T Consensus 171 Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 171 YTCIAENAVSNLSFSVS 187 (193)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCccccccc
Confidence 99999999998766543
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=155.64 Aligned_cols=132 Identities=17% Similarity=0.288 Sum_probs=90.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.|.+..|....... ...+.|.|.
T Consensus 63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~-------------------------------------~~~~~l~V~ 105 (201)
T 1dr9_A 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREH-------------------------------------LAEVTLSVK 105 (201)
T ss_dssp TTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEE-------------------------------------EEEEEEEEE
T ss_pred CCcEEEEecccchhCeEEEEEEEcCCCCcccccc-------------------------------------ccEEEEEEc
Confidence 3457999999999999999999997654432000 013444555
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCCCcEEEEecCC--e-EEEEEeeeccCcC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDSKACRIFIDEE--T-STIAIYSVVRADT 576 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~~~~~~~~~~~--~-~~L~i~~v~~~ds 576 (803)
.++..|.+... ....|+.+.|.|.+. |.|.|.+.|+++|..+..... .+..... . ....+..+..+|.
T Consensus 106 ~~~~~p~~~~~-------~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~d~ 177 (201)
T 1dr9_A 106 ADFPTPSISDF-------EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTTN 177 (201)
T ss_dssp CCCCCCEEEEE-------ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE-EEEECTTTCCEEEEEEEEEETTSC
T ss_pred CCCCCCceEec-------cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccc-eEEecCCCcEEEEEEEEEEEecCC
Confidence 54433333221 123488999999995 999999999999998875432 3333222 2 2223456677999
Q ss_pred eEEEEEEEcCCCCeEEEEEEE
Q psy2776 577 STYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~ 597 (803)
|.|+|.|.|..|..+..+.+.
T Consensus 178 g~Y~C~a~n~~~~~s~~~~~~ 198 (201)
T 1dr9_A 178 HSFMCLIKYGHLRVNQTFNWN 198 (201)
T ss_dssp EEEEEEEEETTCCEEEEEEEC
T ss_pred CEEEEEEecCcceeeeEEecc
Confidence 999999999999988776653
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-17 Score=165.24 Aligned_cols=129 Identities=16% Similarity=0.298 Sum_probs=91.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+..+...... .+.|.|.
T Consensus 82 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~----------------------------------------~~~l~V~ 121 (268)
T 3mj6_A 82 NDGSLLLQDVQKADEGIYTCEIRLKNESMVMKK----------------------------------------PVELWVL 121 (268)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTCCCEEEE----------------------------------------EEEEEEE
T ss_pred CEEEEEECCCCHhHCEEEEEEEEecCCcceEEE----------------------------------------EEEEEEe
Confidence 346799999999999999999998655443321 2222222
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE---cCcCCCeeEEeeC-CeeecCCC---------------------cE
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY---FGFPRPEISWMKN-GAEITDSK---------------------AC 555 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~---~g~p~~~v~W~~~-g~~i~~~~---------------------~~ 555 (803)
|..| ....+.+|+.+.|.|.+ .+.|.+.+.|+++ +..+.... +.
T Consensus 122 --~~~p---------~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 190 (268)
T 3mj6_A 122 --PEEP---------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRV 190 (268)
T ss_dssp --CCCC---------SEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTE
T ss_pred --ccCC---------CccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccce
Confidence 2111 24678899999999999 6779999999994 32211100 11
Q ss_pred EEEe--cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 556 RIFI--DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 556 ~~~~--~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+.. ......|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 191 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 191 DLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237 (268)
T ss_dssp EECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence 1100 12457899999999999999999999999999999998854
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=155.23 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=62.1
Q ss_pred eeeccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCe--ec--------------c---ceeEEE--ecCeeEEEEec
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDS--LI--------------K---GRNITY--ENNVARFTVVN 203 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~--~~--------------~---~~~~~~--~~~~~~L~i~~ 203 (803)
.+...+ .+.+.+|++++|.|.+.+. |.+.+.|+|... .. . ..++.. .....+|.|.+
T Consensus 3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (218)
T 3s96_B 3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN 81 (218)
T ss_dssp SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence 344455 6788999999999999998 889999999321 00 0 012221 34567899999
Q ss_pred CCCCcceEEEEEEEcCCcC-----eeeEEEEEEee
Q psy2776 204 CSESSEGRYTCKATNEAGT-----AETSCTLLVQG 233 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~-----~~~s~~l~V~~ 233 (803)
++.+|+|.|+|.+.|..|. ......|.|..
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~ 116 (218)
T 3s96_B 82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG 116 (218)
T ss_dssp CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence 9999999999999998762 22245666654
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.4e-17 Score=158.04 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=109.2
Q ss_pred EeecceeEEEEEEcCcC---C-CeeEEeeCCeeecCCCc-EEEEecC----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFP---R-PEISWMKNGAEITDSKA-CRIFIDE----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p---~-~~v~W~~~g~~i~~~~~-~~~~~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+++.|.|.+.|.| . +.+.|+|++..+..... ....... ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 67899999999999885 2 48999999987653210 0000011 13579999999999999999999988764
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.+.. ...
T Consensus 95 ~~~~~v~~~~-------------------------------------------------------------------~~~ 107 (207)
T 2vol_A 95 PIEKTISKTK-------------------------------------------------------------------GRP 107 (207)
T ss_dssp CEEEEECCCC-------------------------------------------------------------------CCC
T ss_pred ceEEEeccCC-------------------------------------------------------------------CCC
Confidence 2222221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC--eEEEeeCc---eEEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK--KREIFDGE---NIILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|. |. +.+.|++||.++..... .....++. ...|.|... ..+|.|.
T Consensus 108 ~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~-~~~~~g~ 186 (207)
T 2vol_A 108 KAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKS-NWEAGNT 186 (207)
T ss_dssp BCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHH-HHSSCCE
T ss_pred cCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHH-HcCCCCE
Confidence 25555444333223359999999999985 55 38999999998754321 11122232 234667665 3468999
Q ss_pred EEEEEEccCcc
Q psy2776 744 YKVVATNELGS 754 (803)
Q Consensus 744 Y~C~a~N~~G~ 754 (803)
|+|.|.|....
T Consensus 187 ytC~a~n~~l~ 197 (207)
T 2vol_A 187 FTCSVLHEGLH 197 (207)
T ss_dssp EEEEEECTTSG
T ss_pred EEEEEECCCCC
Confidence 99999998754
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-16 Score=152.45 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=60.3
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Ceec-------------ccee--EEEecCeeEEEEecCCCCcce
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSLI-------------KGRN--ITYENNVARFTVVNCSESSEG 210 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~~-------------~~~~--~~~~~~~~~L~i~~v~~~d~G 210 (803)
..++ ...+.+|++++|.|.+. |.+.+.|+|+ +..+ ...+ ........+|.|.+++.+|+|
T Consensus 5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 81 (211)
T 3tv3_L 5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA 81 (211)
T ss_dssp BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence 3344 67788999999999998 8889999994 2211 0112 222445678999999999999
Q ss_pred EEEEEEEcCCcC--eeeEEEEEEee
Q psy2776 211 RYTCKATNEAGT--AETSCTLLVQG 233 (803)
Q Consensus 211 ~Y~C~a~n~~g~--~~~s~~l~V~~ 233 (803)
.|+|.+.|..+. ......|.|..
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~~l~V~~ 106 (211)
T 3tv3_L 82 VYYCGSLVGNWDVIFGGGTKLTVLG 106 (211)
T ss_dssp EEEEEEEETTTEEEECCCEEEEECC
T ss_pred EEEEEEecCCCceeECCCceEEEeC
Confidence 999999998872 33446666653
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=155.40 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=93.9
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|+|.+.+..|....... ...+.|.|
T Consensus 76 ~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~-------------------------------------~~~~~L~V 118 (256)
T 1nqb_A 76 SSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYW-------------------------------------GQGTTVTV 118 (256)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEE-------------------------------------CCCEEEEE
T ss_pred CCEEEEEECcCChhhCEEEEEEEeeccCccceeEE-------------------------------------cCceeeee
Confidence 34678999999999999999999998653100000 00233444
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-----eeEEee--CCeeec------------CCCcEEEEec
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-----EISWMK--NGAEIT------------DSKACRIFID 560 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-----~v~W~~--~g~~i~------------~~~~~~~~~~ 560 (803)
..+|.+. ..+....+.+|++++|.|.+.+.|++ .+.|+| +|..+. ...++.+...
T Consensus 119 ~~~~~v~------~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~ 192 (256)
T 1nqb_A 119 SSDIELT------QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS 192 (256)
T ss_dssp CCCCCEE------EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE
T ss_pred cccccEE------ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEcc
Confidence 4443211 11234678899999999999998875 999999 565441 1245555545
Q ss_pred CCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEeee
Q psy2776 561 EETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVLGY 601 (803)
Q Consensus 561 ~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~~~ 601 (803)
.....|.|.++..+|+|.|+|.|.|.... ......|.|..+
T Consensus 193 ~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~ 234 (256)
T 1nqb_A 193 GTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA 234 (256)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred CCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence 56679999999999999999999986433 223445666544
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-17 Score=159.53 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=109.1
Q ss_pred EeecceeEEEEEEcCc---CC-CeeEEeeCCeeecCCCcEEEEec-C----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGF---PR-PEISWMKNGAEITDSKACRIFID-E----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~---p~-~~v~W~~~g~~i~~~~~~~~~~~-~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+.+.|.|.+.|. |+ +.+.|+|++..+........... . ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 6789999999999987 44 78999999988764321111111 1 13579999999999999999999987654
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.... ...
T Consensus 103 ~~~~~v~~~~-------------------------------------------------------------------~~~ 115 (218)
T 2rgs_A 103 PIERTISKIK-------------------------------------------------------------------GLV 115 (218)
T ss_dssp CEEEEECCCC-------------------------------------------------------------------CCC
T ss_pred cceEEEeecC-------------------------------------------------------------------CCC
Confidence 1111111000 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEE--EeeCce---EEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKRE--IFDGEN---IILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~--~~~~~~---~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+......+|+.++|.|.+.| .|.+ .|.|+++|.++........ ..++.. ..|.|... ..+|.|.
T Consensus 116 ~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~-~~~d~g~ 194 (218)
T 2rgs_A 116 RAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTS-KWEKTDS 194 (218)
T ss_dssp BCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHH-HHHHCSC
T ss_pred CCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHH-HcCCCCe
Confidence 2555544333322235999999999999 5766 8999999998753221111 122322 23556554 2346999
Q ss_pred EEEEEEccCcce
Q psy2776 744 YKVVATNELGSA 755 (803)
Q Consensus 744 Y~C~a~N~~G~~ 755 (803)
|+|.|.|.....
T Consensus 195 YtC~a~n~~l~~ 206 (218)
T 2rgs_A 195 FSCNVRHEGLKN 206 (218)
T ss_dssp EEEEEECTTSGG
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=153.63 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=84.9
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.+.+..+..... ...|.
T Consensus 69 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~ 107 (212)
T 1q0x_L 69 IGDKAALTITGAQTEDEAIYFCALWSNNKLVFGG-----------------------------------------GTKLT 107 (212)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEECSSCEEECC-----------------------------------------CEEEE
T ss_pred eCCEEEEEECCCCccCCEEEEEEEecCchhhcCC-----------------------------------------CeEEE
Confidence 3456789999999999999999999976532221 22233
Q ss_pred cCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEE-EEecCC-----eEEEEEe
Q psy2776 499 IQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACR-IFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~-~~~~~~-----~~~L~i~ 569 (803)
|...+ ..|.+.+... ...+..|+.+.|.|.+.|.+++ .+.|+|+|..+..+.... .....+ .+.|.|.
T Consensus 108 V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~ 184 (212)
T 1q0x_L 108 VLGQPKSSPTVTLFPP---SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLT 184 (212)
T ss_dssp ECCSCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEE
T ss_pred EecCCCCCCeeEEeCC---CHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEc
Confidence 32211 1122221111 1123458899999999986543 899999999887652211 111111 2579999
Q ss_pred eeccCcCeEEEEEEEcCCCCeEE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
++..+|+|.|+|.|.|.......
T Consensus 185 ~~~~~d~g~Y~C~a~n~~~~~~~ 207 (212)
T 1q0x_L 185 ARAWERHSSYSCQVTHEGHSSNK 207 (212)
T ss_dssp HHHHTTCCEEEEEEEETTEEEEE
T ss_pred HHHccCCCcEEEEEEeCCcceee
Confidence 99999999999999998655433
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=151.91 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=114.4
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec-------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT-------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~-------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. .. +. ...++.+..+ .+...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (232)
T 1dn0_B 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (232)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence 45688999999999998875 5789999853 21 10 1245555442 34579999999999
Q ss_pred cCeEEEEEEEcCC--CC----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 575 DTSTYTVTATNAA--GS----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 575 dsG~Y~C~a~n~~--g~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
|+|.|.|.+.+.. +. ......|.|...
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~----------------------------------------------- 121 (232)
T 1dn0_B 89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG----------------------------------------------- 121 (232)
T ss_dssp GCEEEEEEECSSTTSCSCCSEECCCEEEEECSS-----------------------------------------------
T ss_pred cCEEEEEEEecCCcCCchhhhcccceEEEEccC-----------------------------------------------
Confidence 9999999998422 11 112345665431
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecC-CeEEEEEEEeec-CCC-ceEEee-CCeeccCCCCe-EEEe
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK-GTIRLMAKVKAS-PAP-SIVWFR-NNKPLLSSPKK-REIF 723 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g-~~v~L~C~~~g~-p~~-~v~W~~-~~~~l~~~~~~-~~~~ 723 (803)
+..+|.+........+..| +.++|.|.+.|. |.| .+.|++ ||..+.....+ ....
T Consensus 122 --------------------~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~ 181 (232)
T 1dn0_B 122 --------------------SASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLR 181 (232)
T ss_dssp --------------------CCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEE
T ss_pred --------------------CCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCcccc
Confidence 1124544432222234578 999999999987 877 999999 98887540000 0011
Q ss_pred eCc---eEEEEEecCCCC--CCceeEEEEEEccCcceeeeEEEEE
Q psy2776 724 DGE---NIILELKEADSE--TDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 724 ~~~---~~~L~i~~v~~~--~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.+. ...|.|... .. +|.|.|+|.|.|..|.......+.|
T Consensus 182 ~~~~~~~s~L~i~~~-~~~~~d~g~ytC~v~n~~~~~~~~~~i~~ 225 (232)
T 1dn0_B 182 GGKYAATSQVLLPSK-DVMAGTDEHVVCKVQHPNGNKEKNVPLPV 225 (232)
T ss_dssp TTEEEEEEEEEECTT-CC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred CCcEEEEEEEEEcHH-HhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence 121 346888887 55 6899999999999998766555544
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=150.30 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=81.7
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
+|+|.+++.+|+|.|+|.|.|..|...... .+.|.|..+.
T Consensus 67 sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~----------------------------------------~~~L~V~~~~ 106 (182)
T 1hnf_A 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEK----------------------------------------IFDLKIQERV 106 (182)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTSCEEEEE----------------------------------------EEEEEEECCC
T ss_pred CEEECCCChhhCEEEEEEEEeCCCceeEEE----------------------------------------EEEEEEcCcC
Confidence 699999999999999999999877654321 3445555443
Q ss_pred CCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
..|.+. ..+..+.|+|.+.+.|.+.+.|+++|..+ .+. ...|.+.. ..+|+|.|+|.|
T Consensus 107 ~~P~i~-----------~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~---------~~~i~~~~-~~~d~G~Y~C~a 164 (182)
T 1hnf_A 107 SKPKIS-----------WTCINTTLTCEVMNGTDPELNLYQDGKHL-KLS---------QRVITHKW-TTSLSAKFKCTA 164 (182)
T ss_dssp CCCEEE-----------EETTTTEEEEECSSCSSCEEEEEESSCEE-EEE---------SSCEEEEC-CSCEEEEEEEEE
T ss_pred CCCEEE-----------EccCcEEEEeEccCCCCCEEEEEECCEEC-CCC---------CcEEEEec-ccCCCcEEEEEE
Confidence 333221 12447999999999999999999999887 211 12233322 478999999999
Q ss_pred EcCCCCeEEEEEEE
Q psy2776 584 TNAAGSTSLDLSLQ 597 (803)
Q Consensus 584 ~n~~g~~s~s~~l~ 597 (803)
.|..|..+....+.
T Consensus 165 ~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 165 GNKVSKESSVEPVS 178 (182)
T ss_dssp ECSSCEEEEEEEEE
T ss_pred EeCCCCcEEcceec
Confidence 99999888777663
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=151.29 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=62.4
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec-------------ccee--EEEecCeeEEEEecCCCCc
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI-------------KGRN--ITYENNVARFTVVNCSESS 208 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~-------------~~~~--~~~~~~~~~L~i~~v~~~d 208 (803)
.+...+..+.+.+|+.++|.|.+.+.|.+.+.|+|.+. .. ...+ ........+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3r06_A 3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED 82 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence 45555677889999999999999998889999998431 00 0111 2223356689999999999
Q ss_pred ceEEEEEEEcCCcCee-eEEEEEE
Q psy2776 209 EGRYTCKATNEAGTAE-TSCTLLV 231 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~~~-~s~~l~V 231 (803)
+|.|+|.+.|..+... ....|.|
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V 106 (213)
T 3r06_A 83 IGSYYCQQYYNYPWTFGPGTKLEI 106 (213)
T ss_dssp CSEEEEEECSSSSCEECCCEEEEE
T ss_pred CEEEEEecccCCceEEcCCceEEE
Confidence 9999999998765332 2355666
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-16 Score=156.93 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=62.8
Q ss_pred CcCeeeecCCcEEEEEEECccCCCe-----eEEEEcCeecccee----------EEE-----------ecCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPD-----IKWYKDDSLIKGRN----------ITY-----------ENNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~-----i~W~~~~~~~~~~~----------~~~-----------~~~~~~L~i~~v 204 (803)
+....+.+|++++|.|.+.+.|.+. +.|++++....... ..+ ..+..+|.|.++
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 89 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI 89 (248)
T ss_dssp TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence 4456788999999999999887775 99999753222110 000 112345999999
Q ss_pred CCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 205 SESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
+.+|+|.|+|.+.|..+.....+.|.|..+
T Consensus 90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~ 119 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119 (248)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred CHHHCeEEEEEEEeCCccceeEEEEEEecC
Confidence 999999999999998887777788888764
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=155.08 Aligned_cols=128 Identities=14% Similarity=0.224 Sum_probs=87.1
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.+..+...... ...+.|.|.
T Consensus 80 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--------------------------------------~~~~~l~V~ 121 (214)
T 2zg1_A 80 KNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQ--------------------------------------QNKLNLEVT 121 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTTEEEECC--------------------------------------SSCEEEEEE
T ss_pred CeEEEEEccCCHhhCceEEEEEEcCCCceeeec--------------------------------------CCceEEEEe
Confidence 345799999999999999999998653221100 014455555
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCc----CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF----PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~----p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
.+|..|.+.. ...+.+|+.++|.|.+.+. |.|.+.|++++..+.... ....+.|.|..+..+|.
T Consensus 122 ~~~~~p~i~~------~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~------~~~~~~L~i~~~~~~~~ 189 (214)
T 2zg1_A 122 ALIEKPDIHF------LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE------TTRSSELTLTPRPEDHG 189 (214)
T ss_dssp CCCCCCEEC--------CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS------CCCSSEEEECCCTTCCS
T ss_pred cCCCCCceec------CccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC------ceeEEEEEEecccHHcC
Confidence 5554443322 1125689999999999874 889999999986543221 12457899999999999
Q ss_pred eEEEEEEEcCCCC--eEEEEEEEE
Q psy2776 577 STYTVTATNAAGS--TSLDLSLQV 598 (803)
Q Consensus 577 G~Y~C~a~n~~g~--~s~s~~l~V 598 (803)
|.|+|.|.|..+. .+.++.|.|
T Consensus 190 g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 190 TNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp CEEEEEEECC----CCEEEEECCC
T ss_pred cEEEEEEEeCCCCcceEEEEEEEe
Confidence 9999999998655 455555544
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-16 Score=156.43 Aligned_cols=181 Identities=15% Similarity=0.141 Sum_probs=116.8
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--ee---ec--------------CCCcEEEEecC--CeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AE---IT--------------DSKACRIFIDE--ETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~---i~--------------~~~~~~~~~~~--~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +.+.+.|+|+. .. +. ...++.+..+. ....|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 89 (242)
T 1hxm_B 10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK 89 (242)
T ss_dssp EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred eEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCc
Confidence 5778999999999999886 66889999853 21 10 22455554332 467999999999
Q ss_pred CcCeEEEEEEEcCCC-C------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecC
Q psy2776 574 ADTSTYTVTATNAAG-S------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-~------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~ 646 (803)
+|+|.|.|.+.+..+ . ......|.|...+
T Consensus 90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------------- 125 (242)
T 1hxm_B 90 QDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQ-------------------------------------------- 125 (242)
T ss_dssp GGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSC--------------------------------------------
T ss_pred ccCEEEEEeeecCCccccccceeEcCcEEEEEcccc--------------------------------------------
Confidence 999999999998631 1 1123455554321
Q ss_pred CCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCe-eccCCCC-eEEE
Q psy2776 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNK-PLLSSPK-KREI 722 (803)
Q Consensus 647 ~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~-~l~~~~~-~~~~ 722 (803)
.+. ..++ .|.+.. +....+.+|+.++|.|.+.|. |. +.+.|++++. ++..... ....
T Consensus 126 ~~~-----------------~~~p-~~~v~~-p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~ 186 (242)
T 1hxm_B 126 LDA-----------------DVSP-KPTIFL-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMK 186 (242)
T ss_dssp CCS-----------------CCSC-BCCCCC-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEE
T ss_pred cCC-----------------CcCC-CceEEC-CChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceec
Confidence 000 0000 111221 223346679999999999987 65 6899999987 5643210 0111
Q ss_pred eeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 723 FDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.++. ...|.|..+ .. | |.|+|.|.|..|.......+.+
T Consensus 187 ~~~~~~~~s~L~i~~~-~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 187 TNDTYMKFSWLTVPEK-SL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CSSSEEEEEEEEECTG-GG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCCcEEEEEEEEEccc-cC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 2222 246888876 33 5 9999999999998876666655
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=154.51 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=115.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--------------CeeecC---CCcEEEEe-cCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--------------GAEITD---SKACRIFI-DEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--------------g~~i~~---~~~~~~~~-~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+.+.|.|.+.+ +.+.+.|+|. +..... ..++.+.. ......|.|.+++.+|+|.
T Consensus 11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~ 89 (240)
T 3q5y_A 11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM 89 (240)
T ss_dssp EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred eeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence 577899999999999876 7789999982 221111 13555543 2346789999999999999
Q ss_pred EEEEEEcCCC---CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 579 YTVTATNAAG---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 579 Y~C~a~n~~g---~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.|.+..+ .......|.|....
T Consensus 90 Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 116 (240)
T 3q5y_A 90 YFCASSLRWGDEQYFGPGTRLTVLEDL----------------------------------------------------- 116 (240)
T ss_dssp EEEEEESSTTBCCEECCCEEEEEESCG-----------------------------------------------------
T ss_pred EEEEEccCCCcceEEcCCEEEEEeccc-----------------------------------------------------
Confidence 9999984322 22233445553200
Q ss_pred eeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCe----EEEeeCc--
Q psy2776 656 ELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKK----REIFDGE-- 726 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~----~~~~~~~-- 726 (803)
....+|.+. ..+....+.+|+.++|.|.+.| .|.+ .+.|+++|.++..+.+. ....++.
T Consensus 117 ------------~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~ 184 (240)
T 3q5y_A 117 ------------RNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYS 184 (240)
T ss_dssp ------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEE
T ss_pred ------------cCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEE
Confidence 001144443 3333445667999999999998 5656 79999999998654322 1122222
Q ss_pred -eEEEEEecCCCCCC-ceeEEEEEEccCcceee
Q psy2776 727 -NIILELKEADSETD-AGDYKVVATNELGSATH 757 (803)
Q Consensus 727 -~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~~ 757 (803)
...|.|..+ ..+| .|.|+|.|.|.......
T Consensus 185 ~~s~L~i~~~-~~~d~~g~YtC~v~~~~~~~~~ 216 (240)
T 3q5y_A 185 LSSRLRVSAT-FWHNPRNHFRCQVQFHGLSEED 216 (240)
T ss_dssp EEEEEEEEHH-HHSCTTCEEEEEEEECCBCTTS
T ss_pred EEEEEEECHH-HhccCCCEEEEEEEcCCCCCcc
Confidence 234889988 5677 77999999998766543
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=159.63 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=111.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee---ec--C--C----------CcEEEE--ecCCeEEEEEeeeccCc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE---IT--D--S----------KACRIF--IDEETSTIAIYSVVRAD 575 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~---i~--~--~----------~~~~~~--~~~~~~~L~i~~v~~~d 575 (803)
...+.+|++++|.|.+.+.|.+.+.|+|. +.. +. . . .+.... ......+|.|.+++.+|
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 90 (259)
T 3omz_A 11 SVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEND 90 (259)
T ss_dssp CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGG
T ss_pred eeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCccc
Confidence 57789999999999999999899999983 111 00 0 0 011111 11234579999999999
Q ss_pred CeEEEEEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 576 TSTYTVTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 576 sG~Y~C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
+|.|.|.|.|..+. ......|.|...+.... ..+
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~---------------------------------------~~~---- 127 (259)
T 3omz_A 91 SGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSAD---------------------------------------DAK---- 127 (259)
T ss_dssp CEEEEEEEECTTSSCEEECCCEEEEEEC----------------------------------------------------
T ss_pred CEEEEEEEeeCCccccEECCCCEEEEecCCCCcc---------------------------------------ccc----
Confidence 99999999998662 33345566644210000 000
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCe--ecc------------CCC
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNK--PLL------------SSP 717 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~--~l~------------~~~ 717 (803)
........+|.+...+....+.+|++++|.|.+.+. |.+.+.|+|++. .+. ...
T Consensus 128 -----------~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~ 196 (259)
T 3omz_A 128 -----------KDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSG 196 (259)
T ss_dssp --------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEET
T ss_pred -----------cccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCC
Confidence 000000114567777777889999999999999875 888999998531 110 123
Q ss_pred CeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 718 KKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 718 ~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
++.+.. ......|.|.++ +.+|+|.|.|.|++.
T Consensus 197 r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 197 RYSVNFKKAAKSVALTISAL-QLEDSAKYFCALGES 231 (259)
T ss_dssp TEEECCBGGGTBCCEEESSC-CGGGCSEEEEEEESC
T ss_pred eEEEEEcCcCCEEEEEECCC-ChhHCEEEEEEEeCc
Confidence 444432 234567999999 799999999999864
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=151.36 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=87.5
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.|.|..+...... ...|.
T Consensus 68 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~----------------------------------------~~~l~ 107 (216)
T 2xzc_L 68 SGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGG----------------------------------------GTKLE 107 (216)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBC----------------------------------------CEEEE
T ss_pred cCCEEEEEECCCCcccCEEEEEEEEeCCCcceECC----------------------------------------CEEEE
Confidence 34567899999999999999999999876111110 22333
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCC-Cc-EEEEecCC-----eEEEEEe
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDS-KA-CRIFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~-~~-~~~~~~~~-----~~~L~i~ 569 (803)
|..++..|.+.+.... .....|+.+.|.|.+.|. |++ .+.|+|+|..+..+ .. .......+ .+.|.|.
T Consensus 108 V~~~~~~P~v~~~~~~---~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~ 184 (216)
T 2xzc_L 108 IKRTVAAPSVFIFPPS---DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLS 184 (216)
T ss_dssp ECCCCBCCEEEEECCC---HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred EcCCCCCCceEEeCCC---hhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEEC
Confidence 3333222322221111 112358899999999984 554 89999999988764 11 11111111 2479999
Q ss_pred eeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
++..+|+|.|+|.|.|..........+
T Consensus 185 ~~~~~d~g~Y~C~a~n~~~~~~~~~~i 211 (216)
T 2xzc_L 185 KADYEKHKVYACEVTHQGLSSPVTKSF 211 (216)
T ss_dssp HHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred HHHhCCCCcEEEEEEcCCCCCceEEec
Confidence 999999999999999987665444433
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-16 Score=152.95 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=84.8
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceee--eeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTA--ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 497 (803)
.+..+|+|.+++.+|+|.|+|.+.+..+.. .... ...|
T Consensus 76 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~----------------------------------------~~~l 115 (219)
T 1c1e_H 76 ATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQ----------------------------------------GTSL 115 (219)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECC----------------------------------------CEEE
T ss_pred CCEEEEEECCCCcccCEEEEEEEeccCcccceeecC----------------------------------------ceEE
Confidence 345789999999999999999999876321 1100 2333
Q ss_pred ccCC-CCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCeeecCCCcEEEEecC---CeEEEEEeee
Q psy2776 498 QIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAEITDSKACRIFIDE---ETSTIAIYSV 571 (803)
Q Consensus 498 ~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v 571 (803)
.|.. ++..|.+..... ...+.+|+.+.|.|.+.| .|.| .+.|+++|..+...........+ ..+.|.| +.
T Consensus 116 ~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i-~~ 191 (219)
T 1c1e_H 116 TVSSAKTTPPSVYPLAP---GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV-PS 191 (219)
T ss_dssp EECCCCCBCCEEEEECC---CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEE-ES
T ss_pred EEecCCCCCCeEEEecC---ccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEE-ec
Confidence 3433 222222222111 123467999999999998 8988 99999999764211000111111 1257888 44
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
...|.|.|+|.|.|..|.......|.
T Consensus 192 ~~~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 192 SPRPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp SSTTTSCCEEEEEEGGGTEEEEEECC
T ss_pred ccCCCCEEEEEEEeCCCCccEEEecC
Confidence 44467999999999988766655544
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=150.04 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=112.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec----------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT----------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~----------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|.+.+.+ .+.+.|+|+. ..+. ...++.+..+ .+...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (215)
T 1c5d_H 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (215)
T ss_dssp CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence 46788999999999999875 4789999863 2110 1235555432 24579999999999
Q ss_pred cCeEEEEEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCC
Q psy2776 575 DTSTYTVTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~ 651 (803)
|+|.|.|.+.|..+. ....+.|.|...
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------------------------------------------------- 118 (215)
T 1c5d_H 89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSA-------------------------------------------------- 118 (215)
T ss_dssp GCEEEEEEECCSSSCSCCBCCCEEEEECSS--------------------------------------------------
T ss_pred cCEEEEEEEecCCcccceEcCCEEEEecCC--------------------------------------------------
Confidence 999999999987432 122345666421
Q ss_pred CccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeCceEE
Q psy2776 652 EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGENII 729 (803)
Q Consensus 652 ~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~ 729 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .+.|+++|..+......... ++..+.
T Consensus 119 -----------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~ 180 (215)
T 1c5d_H 119 -----------------QTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVL-QSGLYT 180 (215)
T ss_dssp -----------------CCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEE-ETTEEE
T ss_pred -----------------CCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCccc-CCCCEE
Confidence 1124544433323345789999999999987 888 99999998765322111111 222222
Q ss_pred E--EEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 730 L--ELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 730 L--~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
+ .+... ..+| |.|+|.|.|..|.....
T Consensus 181 ~~s~L~~~-~~~~-g~ytC~v~n~~~~~~~~ 209 (215)
T 1c5d_H 181 LTSSVTSS-TWPS-QTVTCNVAHPASSTKVD 209 (215)
T ss_dssp EEEEEEES-STTT-SCCEEEEEEGGGTEEEE
T ss_pred EEEEEecc-cCCC-CeEEEEEEeCCCCccEE
Confidence 2 23333 3355 99999999999986543
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=153.77 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=113.2
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ...++.+..+ .+...|.|.+++.
T Consensus 15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 94 (261)
T 2xqy_G 15 AELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTS 94 (261)
T ss_dssp EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCc
Confidence 46788999999999999877 5789999863 2211 0235555432 3467999999999
Q ss_pred CcCeEEEEEEEcCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 574 ADTSTYTVTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
+|+|.|.|.+.|..+.. ...+.|.|...
T Consensus 95 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~------------------------------------------------- 125 (261)
T 2xqy_G 95 EDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA------------------------------------------------- 125 (261)
T ss_dssp GGCEEEEEEEECTTSSEEEECCCEEEEECSS-------------------------------------------------
T ss_pred ccCeEEEEEEecCCCcceEECCCEEEEEccC-------------------------------------------------
Confidence 99999999999964321 12235555331
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeC---
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG--- 725 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~--- 725 (803)
...+|.+........+.+|+.++|.|.+.|. |.+ .|.|++++..+.......+...+
T Consensus 126 ------------------~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~ 187 (261)
T 2xqy_G 126 ------------------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYT 187 (261)
T ss_dssp ------------------CCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEE
T ss_pred ------------------CCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEE
Confidence 0114444433222346789999999999986 776 99999998765311100111112
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
....|.|..+ ..+| |.|+|.|.|......
T Consensus 188 ~~s~L~i~~~-~~~~-g~YtC~v~n~~~~~~ 216 (261)
T 2xqy_G 188 LSSSVTVTSS-TWPS-QSITCNVAHPASSTK 216 (261)
T ss_dssp EEEEEEEETT-TTTT-SCCEEEEEEGGGTEE
T ss_pred EEEEEEEecc-ccCC-CEEEEEEEECCCCcc
Confidence 2357999888 5567 999999999776644
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=153.63 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=118.6
Q ss_pred cCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 311 KLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
..|....+.+|+++.|.|.+ +.|.+.+.|+|.+..- ....+....... .....+
T Consensus 29 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~---~~~~~~~~~~~~-------~~~~~~--------------- 83 (237)
T 3sob_L 29 QSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGK---APKLLIYSASFL-------YSGVPS--------------- 83 (237)
T ss_dssp EECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTS---CCEEEEETTTEE-------CTTCCT---------------
T ss_pred eCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCC---CCEEEEEecccc-------CCCCCC---------------
Confidence 33555677789999999999 7788999999853110 001111110000 000000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
...+....+...|+|.+++.+|+|.|+|.+.+..+.....
T Consensus 84 -----------------------r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~----------------- 123 (237)
T 3sob_L 84 -----------------------RFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQ----------------- 123 (237)
T ss_dssp -----------------------TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC-----------------
T ss_pred -----------------------cEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcC-----------------
Confidence 1111234466789999999999999999998876432221
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-C-CCeeEEeeCCe
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P-RPEISWMKNGA 547 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p-~~~v~W~~~g~ 547 (803)
...|.|...+..|.+.+... ...+.+|+.+.|.|.+.+. | .+.+.|+|+|.
T Consensus 124 ------------------------~~~l~V~~~~~~p~v~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~ 176 (237)
T 3sob_L 124 ------------------------GTKVEIKRTVAAPSVFIFPP---SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNA 176 (237)
T ss_dssp ------------------------CEEEEEECCCBCCEEEEECC---CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ------------------------cEEEEEecCCCCCceEEeCC---ChhhccCCceEEEEEEcccCCCceEEEEEECCC
Confidence 22333333333333322111 1223458899999999885 4 48999999999
Q ss_pred eecCCC-c-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 548 EITDSK-A-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 548 ~i~~~~-~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.+..+. . .......+ .+.|.|..+..+|+|.|+|.|.|.......+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 232 (237)
T 3sob_L 177 LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 232 (237)
T ss_dssp ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred CCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence 887532 1 11111111 3578999999999999999999998765544443
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=146.77 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=113.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-------------------CCCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-------------------DSKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-------------------~~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|+++.|.|.+.+.+ .+.+.|+|.. ..+. ...++.+..+ .....|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 88 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL 88 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence 46688999999999998753 5789999742 1110 1145554432 34568999999
Q ss_pred ccCcCeEEEEEEEcCC--CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 572 VRADTSTYTVTATNAA--GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~--g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+.+|+|.|.|.+.|.. ........|.|...+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------- 121 (221)
T 3m8o_H 89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS----------------------------------------------- 121 (221)
T ss_dssp CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC-----------------------------------------------
T ss_pred CHHHCEEEEEEEECCChhheECCCEEEEEecCC-----------------------------------------------
Confidence 9999999999999874 223334456554211
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCC-C-ceEEeeCCeecc----------CC
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPA-P-SIVWFRNNKPLL----------SS 716 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~-~-~v~W~~~~~~l~----------~~ 716 (803)
..+|.+........ .+|+.++|.|.+.| .|. + .+.|+++|.++. .+
T Consensus 122 --------------------~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~ 180 (221)
T 3m8o_H 122 --------------------PTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASG 180 (221)
T ss_dssp --------------------CBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSS
T ss_pred --------------------CCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCC
Confidence 12454542222222 68999999999998 676 4 899999998763 22
Q ss_pred CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 717 PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 717 ~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+.+ ...|.|..+ ..+|+|.|+|.|.|..|...
T Consensus 181 ~~~~~-----~s~L~i~~~-~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 181 DLYTT-----SSQLTLPAT-QCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp SCEEE-----EEEEEEEGG-GSCTTCEEEEEEEETTSCCE
T ss_pred CcEEE-----EEEEEECHH-HcCCCCeEEEEEEECCCCce
Confidence 22221 235899998 67899999999999987643
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=132.38 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=88.8
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+........|.|.++ +.+|+|.|+|.|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 84 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA-RQEHCGCYTLLVEN 84 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTC-CTTTCEEEEEEEEC
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCC-ChhcCEEEEEEEEE
Confidence 48899988889999999999999999999999999999999998888888887777889999999 79999999999999
Q ss_pred cCcceeeeEEEEEEeeccC
Q psy2776 751 ELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~~~~~ 769 (803)
.+|..+..+.|.|...+..
T Consensus 85 ~~g~~~~~~~l~V~~~p~~ 103 (114)
T 2cqv_A 85 KLGSRQAQVNLTVVDKPDP 103 (114)
T ss_dssp SSCEEECCEEEEEECSCSC
T ss_pred CCCcEEEEEEEEEECCCCC
Confidence 9999999999999654433
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.64 E-value=9.6e-16 Score=155.15 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=114.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee--------------CCeeecCC----CcEEEEec-CCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK--------------NGAEITDS----KACRIFID-EETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~--------------~g~~i~~~----~~~~~~~~-~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.| ..+.+.+.+.|+| ++..+... .++.+... .....|.|.+++.+|+|
T Consensus 11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 89 (245)
T 4ei6_B 11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSA 89 (245)
T ss_dssp EEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCE
T ss_pred eEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCE
Confidence 57789999999999 6778889999998 22222221 45555432 34579999999999999
Q ss_pred EEEEEEEcCC----CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 578 TYTVTATNAA----GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 578 ~Y~C~a~n~~----g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|.|.+.. +.......|.|....
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------- 118 (245)
T 4ei6_B 90 VYFCASSFWGAYAEQFFGPGTRLTVLEDL--------------------------------------------------- 118 (245)
T ss_dssp EEEEEEECSSTTCCCEECCCEEEEEESCG---------------------------------------------------
T ss_pred EEEEEEccCCCcceEEEcCCcEEEEeccc---------------------------------------------------
Confidence 9999999642 222333445553210
Q ss_pred cceeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEE--------
Q psy2776 654 TTELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI-------- 722 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~-------- 722 (803)
....+|.+ +..+....+.+|+.++|.|.+.|. |.+ .+.|+++|.++..+.+....
T Consensus 119 --------------~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 184 (245)
T 4ei6_B 119 --------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPAL 184 (245)
T ss_dssp --------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTS
T ss_pred --------------CCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccC
Confidence 00013433 333444456679999999999985 545 89999999998654321110
Q ss_pred eeCc---eEEEEEecCCCCCC-ceeEEEEEEccCccee
Q psy2776 723 FDGE---NIILELKEADSETD-AGDYKVVATNELGSAT 756 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~ 756 (803)
.++. ...|.|... ..+| .|.|+|.|.|......
T Consensus 185 ~~g~~~~~s~L~i~~~-~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 185 NDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp TTCCEEEEEEEEEEHH-HHSCTTCEEEEEEEECCBCTT
T ss_pred CCCCEEEEEEEEEcHH-HhccCCCeEEEEEEECCCCCc
Confidence 0122 234888887 4567 9999999999765544
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=151.90 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=117.3
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee--------------cCCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI--------------TDSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i--------------~~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +...+.|+|.. . .+ ....++.+..+ .+...|.|.+++.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (253)
T 3liz_H 9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS 88 (253)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 4678899999999999873 35689999842 1 11 01134554432 3457899999999
Q ss_pred CcCeEEEEEEEcCC----CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 574 ADTSTYTVTATNAA----GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~----g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|+|.|.|.+.|.. +.......|.|...
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~------------------------------------------------ 120 (253)
T 3liz_H 89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAA------------------------------------------------ 120 (253)
T ss_dssp GGCEEEEEEECCBTTTBCCEECCCEEEEECSS------------------------------------------------
T ss_pred hhCEEEEEEEecCCcceeeEECCCEEEEEecc------------------------------------------------
Confidence 99999999998862 22233345555321
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEEEeeC--
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREIFDG-- 725 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~-- 725 (803)
...+|.+........+..|+.++|.|.+.| .|.+ .+.|+++|..+...........+
T Consensus 121 -------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~ 181 (253)
T 3liz_H 121 -------------------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLY 181 (253)
T ss_dssp -------------------CCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEE
T ss_pred -------------------CCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeE
Confidence 112565654444445667999999999998 6767 89999998743211000011111
Q ss_pred -ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 726 -ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 726 -~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
....|.|... ..+| |.|+|.|.|..+.....+.|.+.
T Consensus 182 ~~~s~L~i~~~-~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 182 TLSSSVTVPSS-TWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp EEEEEEEEETT-STTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEEEEcHH-HCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 1256999998 6788 99999999999988877777665
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-15 Score=150.78 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=57.5
Q ss_pred cceEEeecceeEEEEEEcCcCC-CeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPR-PEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
....+.+|++++|.|.+.+.|. +.+.|+|. +..+. ...++.+.......+|.|.++..+|+|.|.
T Consensus 157 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 236 (256)
T 3juy_B 157 GTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYY 236 (256)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEE
Confidence 3577889999999999999887 89999983 32221 234566655566788999999999999999
Q ss_pred EEEEcCCC
Q psy2776 581 VTATNAAG 588 (803)
Q Consensus 581 C~a~n~~g 588 (803)
|.|.|..+
T Consensus 237 C~~~~~~~ 244 (256)
T 3juy_B 237 CQVYGASS 244 (256)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 99998644
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=150.83 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=115.8
Q ss_pred eeccCcCeeeecCCcEEEEEEECccC----CCeeEEEEcC--eecc-------------ceeEE--EecCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVP----TPDIKWYKDD--SLIK-------------GRNIT--YENNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p----~p~i~W~~~~--~~~~-------------~~~~~--~~~~~~~L~i~~v~ 205 (803)
+...+....+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ..++. ..++..+|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (240)
T 1moe_A 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE 83 (240)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence 44456677889999999999999887 7789999963 1110 11222 23345689999999
Q ss_pred CCcceEEEEEEEcCCcC-eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 206 ESSEGRYTCKATNEAGT-AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
.+|+|.|+|.+.|..+. ......|.|...+....
T Consensus 84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~--------------------------------------------- 118 (240)
T 1moe_A 84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGG--------------------------------------------- 118 (240)
T ss_dssp GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCC---------------------------------------------
T ss_pred hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCC---------------------------------------------
Confidence 99999999999998664 33345676665421000
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeec--Ceecc------------
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKK--GKEIK------------ 347 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~--g~~l~------------ 347 (803)
+......+....+.+|++++|.|.+ +.| .+.+.|+|+ |..+.
T Consensus 119 ---------------------~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~ 177 (240)
T 1moe_A 119 ---------------------GEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNS 177 (240)
T ss_dssp ---------------------CCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEE
T ss_pred ---------------------ceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCcc
Confidence 0011111233456779999999999 666 469999996 33221
Q ss_pred -----ccceeEEEEc--CceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 -----ESARHIITSR--GTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 -----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+..+ +....|.|.++..+|+|.|.|.|...
T Consensus 178 ~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 178 KYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred ccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 1123444433 44578999999999999999999853
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-15 Score=150.62 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=63.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.+.+.|.+.+.|+|+ +..+. ...++.........+|.|.++..+|+|.|.|.
T Consensus 147 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 226 (256)
T 3umt_A 147 SLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCL 226 (256)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEE
T ss_pred eEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEE
Confidence 46788999999999999999899999984 22221 12456555556677899999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeE
Q psy2776 583 ATNAAGST-SLDLSLQVLGYI 602 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p 602 (803)
|.|..+.. .....|.|...+
T Consensus 227 ~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 227 QYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp ECSSSSCEECCCEEEEEC---
T ss_pred EeeCCCcEECCCEEEEEECCC
Confidence 99865432 334667776654
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-15 Score=149.46 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=116.2
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe-----ec----------ccee--EEEecCeeEEEEecCCCC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS-----LI----------KGRN--ITYENNVARFTVVNCSES 207 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~-----~~----------~~~~--~~~~~~~~~L~i~~v~~~ 207 (803)
+.+...+..+.+.+|+.++|.|.+.+.|.+.+.|+|... .+ ...+ ....+...+|.|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 345556677888999999999999999999999999531 00 0111 222334568999999999
Q ss_pred cceEEEEEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccc
Q psy2776 208 SEGRYTCKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWT 286 (803)
Q Consensus 208 d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (803)
|+|.|.|.+.|..+... ....|.|...+......... ..+.
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~-~~~~------------------------------------- 126 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSG-GGGS------------------------------------- 126 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------------------------------------
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccc-cccc-------------------------------------
Confidence 99999999998766432 23456665431000000000 0000
Q ss_pred cccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeec--Ceeccc-------------
Q psy2776 287 SDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKK--GKEIKE------------- 348 (803)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~--g~~l~~------------- 348 (803)
. ....+.++. .+....+.+|++++|.|.+ +.+ .+.+.|+|+ +..+..
T Consensus 127 -------------~-~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 191 (250)
T 3esu_F 127 -------------G-GGGSEVQLQ-QSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNY 191 (250)
T ss_dssp ----------------------CE-ECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred -------------c-CcccceEEe-cCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCcccc
Confidence 0 000011111 1233456789999999999 556 789999997 544321
Q ss_pred ----cceeEEEEc--CceeEEEEeecCCCCCccEEEEEec
Q psy2776 349 ----SARHIITSR--GTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 349 ----~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
..++.+..+ +....|.|.++..+|+|.|.|.+.+
T Consensus 192 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 192 NGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp CGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 134444433 3456799999999999999999997
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=156.19 Aligned_cols=130 Identities=14% Similarity=0.232 Sum_probs=79.8
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|.|.+.+..+...... + ....|.|
T Consensus 98 ~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---~-----------------------------------~~~~l~V 139 (270)
T 3qib_D 98 NSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYF---G-----------------------------------PGTRLLV 139 (270)
T ss_dssp TSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEE---C-----------------------------------CCEEEEE
T ss_pred CcEEEEEECCCCHhHCeEEEEEEecCCCccceEE---C-----------------------------------CcEEEEE
Confidence 3467899999999999999999987432111100 0 0122223
Q ss_pred CC---CCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCeeecCCCcEEE------Ee-cCC----e
Q psy2776 500 QS---PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAEITDSKACRI------FI-DEE----T 563 (803)
Q Consensus 500 ~~---~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~i~~~~~~~~------~~-~~~----~ 563 (803)
.. .+..|.+.+.. .....+..|+.++|.|.+.| .|.+ .+.|+|+|..+..+..... .. .++ .
T Consensus 140 ~~~~~~~~~P~v~~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (270)
T 3qib_D 140 LEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALS 217 (270)
T ss_dssp ESCSTTCBCCEEEEEE--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEE
T ss_pred ccccccccCCceEEEC--CCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEE
Confidence 22 11112111111 11223445999999999998 5656 8999999999875421110 00 011 2
Q ss_pred EEEEEeeeccCc-CeEEEEEEEcCCCC
Q psy2776 564 STIAIYSVVRAD-TSTYTVTATNAAGS 589 (803)
Q Consensus 564 ~~L~i~~v~~~d-sG~Y~C~a~n~~g~ 589 (803)
+.|.|.....+| .|.|+|.|.|....
T Consensus 218 s~L~i~~~~~~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 218 SRLRVSATFWQNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp EEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred EEEEEcHHHhccCCCeEEEEEEecCCC
Confidence 567888888888 99999999987544
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=152.14 Aligned_cols=177 Identities=18% Similarity=0.187 Sum_probs=112.2
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec----------------cceeEEEe---cCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI----------------KGRNITYE---NNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~----------------~~~~~~~~---~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|++++|.|. .+.|.+.+.|+|+. ..+ ...++... ....+|.|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 344466788899999999999 67788999999952 110 01122222 245689999999
Q ss_pred CCcceEEEEEEEcCCcCee-----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccc
Q psy2776 206 ESSEGRYTCKATNEAGTAE-----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 280 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (803)
.+|+|.|+|.+.|..|... ....|.|...+..+.+..
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~-------------------------------------- 123 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDA-------------------------------------- 123 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHH--------------------------------------
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCc--------------------------------------
Confidence 9999999999999865311 123455543310000000
Q ss_pred eeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecC--eec-----------
Q psy2776 281 WLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKG--KEI----------- 346 (803)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g--~~l----------- 346 (803)
......+...+....+.+|+++.|.|.+ +.|.+.+.|+|++ ..+
T Consensus 124 ----------------------~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~ 181 (238)
T 2p1y_A 124 ----------------------AKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSD 181 (238)
T ss_dssp ----------------------HHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCS
T ss_pred ----------------------ccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCC
Confidence 0000011222344556789999999999 7888999999974 111
Q ss_pred -cccceeEEE--EcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 347 -KESARHIIT--SRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 347 -~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
....++.+. ..+....|.|.++..+|+|.|+|.|.|..
T Consensus 182 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 182 KKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred cccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 112334443 23445789999999999999999999873
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-16 Score=153.63 Aligned_cols=173 Identities=14% Similarity=0.201 Sum_probs=113.7
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eecc-------------ceeE--EEecCeeEEEEecCCCCcceEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIK-------------GRNI--TYENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~-------------~~~~--~~~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+....+.+|+.++|.|.+.+.|.+.+.|+|++ ..+. ..++ ...+....|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 56678889999999999998888899999853 2220 1222 22345678999999999999999
Q ss_pred EEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 214 CKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 214 C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
|.+.|..+.. .....|.|...+.
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~------------------------------------------------------ 111 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPK------------------------------------------------------ 111 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCC------------------------------------------------------
T ss_pred EEEEcccCcccccCCceEEEEccCCC------------------------------------------------------
Confidence 9999732221 1224455533210
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-eeeEEeecCeeccccceeE-EE--EcC--ceeE
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-IQVKWLKKGKEIKESARHI-IT--SRG--TQRK 362 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~~i~W~~~g~~l~~~~~~~-~~--~~~--~~~~ 362 (803)
.+ +.+....+. ..+.+|+.+.|.|.+ +. |. +.+.|+|+|.++..+.... .. .++ ....
T Consensus 112 -----------~~--p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~ 177 (212)
T 1nfd_E 112 -----------SS--PKVTVFPPS-PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSY 177 (212)
T ss_dssp -----------BC--CEEECCCCC-HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEB
T ss_pred -----------CC--CEEEeeCCc-hHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEE
Confidence 00 001111111 122358899999999 54 55 8999999999887542211 11 111 1245
Q ss_pred EEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 363 LVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 363 l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
|.|.++..+|+|.|+|.|.|........|
T Consensus 178 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 206 (212)
T 1nfd_E 178 LSLTADQWKSHNRVSCQVTHEGETVEKSL 206 (212)
T ss_dssp CCEEHHHHHTCSCEEEEEECTTTTCCCCB
T ss_pred EEEchhhcCCCCeEEEEEEeCCceEEEEc
Confidence 88999999999999999999877654444
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-15 Score=150.50 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=91.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.+..+..... ...|.|.
T Consensus 78 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~V~ 116 (253)
T 3uzq_A 78 NTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQ-----------------------------------------GTLVTVS 116 (253)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECSSSCCEECC-----------------------------------------CEEEEEC
T ss_pred CeEEEEeCCCCcccCEEEEEEEeeCCccEECC-----------------------------------------CcEEEEe
Confidence 45679999999999999999999855433221 1122222
Q ss_pred CC----------CCCccceeeeccccceEEeecceeEEEEEEcCcCCC----eeEEeeC--Ceeec------------CC
Q psy2776 501 SP----------PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP----EISWMKN--GAEIT------------DS 552 (803)
Q Consensus 501 ~~----------p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~----~v~W~~~--g~~i~------------~~ 552 (803)
.. ...+.. .....+....+.+|++++|.|.+.+.|.+ .+.|+|+ +..+. ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~-~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
T 3uzq_A 117 AGGGGSGGGGSGGGGSEL-VMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIP 195 (253)
T ss_dssp SSSCCCCC---------C-CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred cCCccccccccCCCcccc-eEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccC
Confidence 11 000000 11112235778899999999999998887 8999985 22211 12
Q ss_pred CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEEEEeee
Q psy2776 553 KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVLGY 601 (803)
Q Consensus 553 ~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l~V~~~ 601 (803)
.++..........|.|.++..+|+|.|.|.|.|..+.. .....|.|...
T Consensus 196 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~ 245 (253)
T 3uzq_A 196 ARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRP 245 (253)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred CceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCC
Confidence 45555555566789999999999999999999875442 33445666554
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-15 Score=152.77 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=91.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.|..|....... + ....|.|.
T Consensus 103 ~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~--~-----------------------------------~~~~L~V~ 145 (282)
T 1qok_A 103 NTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYW--G-----------------------------------QGTTVTVS 145 (282)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEE--C-----------------------------------CCEEEEEE
T ss_pred CeEEEEECcCChhhCEEEEEEeccCCCccceeee--C-----------------------------------CCEEEEEe
Confidence 4578999999999999999999998652111000 0 01223333
Q ss_pred CCCCC----------ccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEee--CCeeec------------CCCcEE
Q psy2776 501 SPPQQ----------PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEIT------------DSKACR 556 (803)
Q Consensus 501 ~~p~~----------~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~------------~~~~~~ 556 (803)
.+|.. ... .....+....+.+|++++|.|.+.+.| +.+.|+| +|..+. ...++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~ 223 (282)
T 1qok_A 146 SGGGGSGGGGSGGGGSEN-VLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFS 223 (282)
T ss_dssp C---------------CC-CEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEE
T ss_pred cCCcccCCccCCCCccce-EEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeE
Confidence 32210 000 111122346788999999999999999 8999999 565431 134565
Q ss_pred EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEeee
Q psy2776 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVLGY 601 (803)
Q Consensus 557 ~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~~~ 601 (803)
+.......+|.|.++..+|+|.|+|.|.|..+. ......|.|...
T Consensus 224 ~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~ 269 (282)
T 1qok_A 224 GSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKRA 269 (282)
T ss_dssp EEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred EecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEecc
Confidence 554556779999999999999999999986432 233456666543
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=142.64 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=61.3
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-------------eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-------------RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
.+.+.+|++++|.|.+.+ |.+.|.|+|++..+.. .++.......+|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 456779999999999854 8889999998864321 12333334578999999999999999999998
Q ss_pred CcCeeeEEEEEEeee
Q psy2776 220 AGTAETSCTLLVQGK 234 (803)
Q Consensus 220 ~g~~~~s~~l~V~~~ 234 (803)
.| ...+.|.|..+
T Consensus 83 ~~--~~~~~L~V~~~ 95 (171)
T 1ccz_A 83 TD--TMKFFLYVLEM 95 (171)
T ss_dssp CS--CEEEEEEEECC
T ss_pred CC--cEEEEEEEECc
Confidence 87 56677777654
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=154.44 Aligned_cols=172 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. ..+. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (257)
T 3bn9_D 9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA 88 (257)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999999876 5789999853 2110 1245555443 3467999999999
Q ss_pred CcCeEEEEEEEcCCCC---------e----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEE
Q psy2776 574 ADTSTYTVTATNAAGS---------T----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~---------~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (803)
+|+|.|.|.+.|..|. . .....|.|...
T Consensus 89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~--------------------------------------- 129 (257)
T 3bn9_D 89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA--------------------------------------- 129 (257)
T ss_dssp GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS---------------------------------------
T ss_pred hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC---------------------------------------
Confidence 9999999999997651 1 12235555331
Q ss_pred EEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC
Q psy2776 641 VFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK 718 (803)
Q Consensus 641 ~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~ 718 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+.....
T Consensus 130 ----------------------------~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~ 181 (257)
T 3bn9_D 130 ----------------------------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF 181 (257)
T ss_dssp ----------------------------CCBCCEECCCCC-----------CCCEEEEEBSSCCEEEETTTTCCSSCEEC
T ss_pred ----------------------------CCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEec
Confidence 1124544332222345679999999999986 877 8999999886432111
Q ss_pred -eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 719 -KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 719 -~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
..+..++. .+.|.|..+ ..+| |.|+|.|.|..+....
T Consensus 182 ~~~~~~~g~y~~~s~L~I~~~-~~~~-g~YtC~v~n~~~~~~~ 222 (257)
T 3bn9_D 182 PAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKV 222 (257)
T ss_dssp CCEECTTSCEEEEEECCCC---------CEEEEEEEGGGTEEE
T ss_pred CCeEcCCCCEEEEEEEEEccc-ccCC-CeEEEEEEecCCCcCE
Confidence 01111222 345788887 4567 9999999997665443
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=155.45 Aligned_cols=173 Identities=13% Similarity=0.110 Sum_probs=114.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee------------ecCC----CcEEEEec-CCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE------------ITDS----KACRIFID-EETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~------------i~~~----~~~~~~~~-~~~~~L~i~~v~~~dsG 577 (803)
...+.+|++++|.|.+. .+.+.+.|+|. +.. ...+ .++.+... .....|.|.+++.+|+|
T Consensus 35 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G 113 (268)
T 3pl6_D 35 NKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSA 113 (268)
T ss_dssp EEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCE
T ss_pred EEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCE
Confidence 57789999999999987 57789999982 221 1111 45554432 33579999999999999
Q ss_pred EEEEEEEcC--CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 578 TYTVTATNA--AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 578 ~Y~C~a~n~--~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
.|.|.+.|. .+.......|.|....
T Consensus 114 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 140 (268)
T 3pl6_D 114 VYLCATSALGDTQYFGPGTRLTVLEDL----------------------------------------------------- 140 (268)
T ss_dssp EEEEEEESSSSSCEECCCEEEEEESCG-----------------------------------------------------
T ss_pred EEEEEEecCCCceeeCCcEEEEEecCc-----------------------------------------------------
Confidence 999999984 2233334455554310
Q ss_pred eeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEEE--------ee
Q psy2776 656 ELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREI--------FD 724 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~--------~~ 724 (803)
....+|.+ +..+....+.+|+.++|.|.+.|.|++ .+.|+++|.++..+.+.... .+
T Consensus 141 ------------~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 208 (268)
T 3pl6_D 141 ------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALND 208 (268)
T ss_dssp ------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTT
T ss_pred ------------ccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCC
Confidence 00113433 333444556679999999999997654 89999999988653211100 11
Q ss_pred Cc---eEEEEEecCCCCCC-ceeEEEEEEccCccee
Q psy2776 725 GE---NIILELKEADSETD-AGDYKVVATNELGSAT 756 (803)
Q Consensus 725 ~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~ 756 (803)
+. ...|.|... ..+| +|.|+|.|.|......
T Consensus 209 ~~~~~~s~l~i~~~-~~~d~~g~YtC~v~~~~l~~~ 243 (268)
T 3pl6_D 209 SRYSLSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 243 (268)
T ss_dssp CCEEEEEEEEEEHH-HHSCTTCEEEEEEEECCBCTT
T ss_pred CcEEEEEEEEEcHH-HhccCCCEEEEEEEcCCCCCC
Confidence 11 245788877 3455 9999999999876654
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=139.03 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=67.1
Q ss_pred eeeecCCcEEEEEEECccCCC--eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTP--DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
+.+.+|++++|.|.+ +.|.| .|.|++.+..+ .+.........|.|.+++.+|+|.|.|.|.|..+....++.|.|
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV 93 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence 588899999999999 88888 99999976555 33344566788999999999999999999999888778889999
Q ss_pred eeee
Q psy2776 232 QGKE 235 (803)
Q Consensus 232 ~~~~ 235 (803)
...|
T Consensus 94 ~~~P 97 (210)
T 1gsm_A 94 YAFP 97 (210)
T ss_dssp EBCC
T ss_pred EecC
Confidence 8764
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-15 Score=148.64 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=110.7
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.|....+.+|++++|.|.+ +.|.+.+.|+|+...- .....+...+. ......+.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~--------~~~~~~~r--------------- 61 (242)
T 2znx_A 7 SPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHE--SPRLLIKYASQ--------SISGIPSR--------------- 61 (242)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTS--CCEEEEETTTE--------ECTTSCTT---------------
T ss_pred cCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCC--CceEEEEeccc--------cCCCCCCC---------------
Confidence 3555677889999999999 7888999999863100 00111100000 00000000
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
..+...++..+|+|.+++.+|+|.|.|.+.+..+.....
T Consensus 62 -----------------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~------------------ 100 (242)
T 2znx_A 62 -----------------------FSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGG------------------ 100 (242)
T ss_dssp -----------------------EEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC------------------
T ss_pred -----------------------EEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECC------------------
Confidence 111223456789999999999999999999875321111
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCC---------CccceeeeccccceEEeecceeEEEEEEcCcC--CCe
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ---------QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP--RPE 539 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~---------~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p--~~~ 539 (803)
...|.|..+|. .+.+.+... ....+.+|++++|.|.+.+.| .+.
T Consensus 101 -----------------------~~~L~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~g~~~~~~~ 155 (242)
T 2znx_A 101 -----------------------GTKLEITGGGGSGGGGSGGGGSDIQLQES--GPSLVKPSQTLSLTCSVTGDSITSDY 155 (242)
T ss_dssp -----------------------CEEEEEC---------------CCEEEEE--CCSEECTTSCEEEEEEEESSCGGGSC
T ss_pred -----------------------CEEEEEcCCCCCCcccccccccceeeecC--CcceecCCCeEEEEEEEEccccCCcc
Confidence 12233333332 011111111 124588999999999999876 478
Q ss_pred eEEeeC--Ceeec----------------CCCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 540 ISWMKN--GAEIT----------------DSKACRIFID--EETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 540 v~W~~~--g~~i~----------------~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
+.|+|+ +..+. ...++.+..+ ....+|.|.++..+|+|.|.|.|.|.
T Consensus 156 v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 156 XSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 999985 33221 1234554432 34579999999999999999999984
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=152.80 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=117.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe-----ecc----------ceeEE--EecCeeEEEEecCCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS-----LIK----------GRNIT--YENNVARFTVVNCSE 206 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~-----~~~----------~~~~~--~~~~~~~L~i~~v~~ 206 (803)
.+.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|++. .+. ..++. ..++..+|.|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 3455666777889999999999999998889999998642 110 11222 233456899999999
Q ss_pred CcceEEEEEEEcCCcC-eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecc
Q psy2776 207 SSEGRYTCKATNEAGT-AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARW 285 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (803)
+|+|.|+|.+.|..+. ......|.|...+...... ..
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~---~~--------------------------------------- 129 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEG---RS--------------------------------------- 129 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC------------------------------------------------------
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccc---cc---------------------------------------
Confidence 9999999999997654 2223556665442100000 00
Q ss_pred ccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeecC--eecc-------------
Q psy2776 286 TSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKKG--KEIK------------- 347 (803)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~g--~~l~------------- 347 (803)
....+.+....+....+.+|++++|.|.+ +.| .+.+.|+|++ ..+.
T Consensus 130 ----------------~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~ 193 (276)
T 3auv_A 130 ----------------GGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTY 193 (276)
T ss_dssp ---------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEE
T ss_pred ----------------cccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccc
Confidence 00000011111234556789999999999 555 5899999963 2210
Q ss_pred ----ccceeEEEEc--CceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 348 ----ESARHIITSR--GTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 348 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
...++.+..+ .....|.|.++..+|+|.|.|.+.|..
T Consensus 194 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 236 (276)
T 3auv_A 194 YADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF 236 (276)
T ss_dssp ECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred cccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence 1234444443 345679999999999999999999973
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=152.66 Aligned_cols=129 Identities=15% Similarity=0.221 Sum_probs=84.3
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.+.+..+..... ...|.
T Consensus 105 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~ 143 (252)
T 3bkj_L 105 SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGA-----------------------------------------GTKLE 143 (252)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEECSBSSCEECC-----------------------------------------CEEEE
T ss_pred cCCEEEEEECCCCcccCEEEEEEEEcCCccEECC-----------------------------------------CEEEE
Confidence 3456689999999999999999999875432211 12333
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCC-Cc-EEEEecCC-----eEEEEEe
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDS-KA-CRIFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~-~~-~~~~~~~~-----~~~L~i~ 569 (803)
|..++..|.+.+... ...+.+|+.++|.|.+.|. |++ .+.|+|+|..+..+ .. .......+ .+.|.|.
T Consensus 144 V~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~ 220 (252)
T 3bkj_L 144 LKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 220 (252)
T ss_dssp ECCCCBCCEEEEECC---CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred EeCCCcCcEEEEeCC---ChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEc
Confidence 333222222222111 1112368999999999985 443 79999999988654 11 11111111 2579999
Q ss_pred eeccCcCeEEEEEEEcCCCCeE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
++..+|+|.|+|.|.|......
T Consensus 221 ~~~~~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 221 KDEYERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp HHHHHHCCEEEEEEECTTCSSC
T ss_pred chhccCCCeEEEEEEeCCCCCC
Confidence 9999999999999999876643
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=149.20 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=54.3
Q ss_pred cCeeeecCCcEEEEEEECccCCCe---eEEEEcCeeccc-----------------eeEE---------EecCeeEEEEe
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTPD---IKWYKDDSLIKG-----------------RNIT---------YENNVARFTVV 202 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p~---i~W~~~~~~~~~-----------------~~~~---------~~~~~~~L~i~ 202 (803)
.++.+..|++++|.|.+.+.+.+. |.|+|++..+.. .+.. ......+|.|.
T Consensus 9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 346678999999999999877663 899997643210 0011 11234679999
Q ss_pred cCCCCcceEEEEEEEcCCcCeeeE
Q psy2776 203 NCSESSEGRYTCKATNEAGTAETS 226 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~~g~~~~s 226 (803)
+++.+|+|.|+|.+.|..+.....
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~~~ 112 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTRRG 112 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEE
T ss_pred cCCHHHCcceEEEEEeCCCcceee
Confidence 999999999999999887755443
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=129.84 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=80.5
Q ss_pred ccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 515 ~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
+..+.+.+|+.+.|.|.+.|.|.|.++|+|+|..|..+.++.+..++...+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 20 p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 99 (107)
T 3knb_B 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAA 99 (107)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEE
Confidence 35688999999999999999999999999999999998888888777888999999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 100 ~l~V~~pP 107 (107)
T 3knb_B 100 AVTVLEPP 107 (107)
T ss_dssp EEEEEC--
T ss_pred EEEEEcCC
Confidence 99998765
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=150.90 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=55.7
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCC-C-eeEEEEcCe--ec----------c---ceeEE--EecCeeEEEEecCC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPT-P-DIKWYKDDS--LI----------K---GRNIT--YENNVARFTVVNCS 205 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~-p-~i~W~~~~~--~~----------~---~~~~~--~~~~~~~L~i~~v~ 205 (803)
+.+.. +....+.+|++++|.|.+.+.+. + .+.|+|++. .+ . ..++. ..+...+|.|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 33444 66778899999999999987543 4 699999642 11 0 11222 23355689999999
Q ss_pred CCcceEEEEEEEcCCc
Q psy2776 206 ESSEGRYTCKATNEAG 221 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g 221 (803)
.+|+|.|+|.+.|..+
T Consensus 100 ~~D~G~Y~C~~~~~~~ 115 (234)
T 2j6e_L 100 SEDEADYYCATWDDSL 115 (234)
T ss_dssp STTCSEEEEEEEETTT
T ss_pred HHHCEEEEEEEEcCCc
Confidence 9999999999999877
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=127.27 Aligned_cols=94 Identities=26% Similarity=0.389 Sum_probs=87.9
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N 85 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDC-HTDDSGTYRAVCTN 85 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCC-CcccCEEEEEEEEe
Confidence 37889988888999999999999999999999999999999999988988888888889999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
..|..+..+.|.|++
T Consensus 86 ~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 86 YKGEASDYATLDVTG 100 (103)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEEC
Confidence 999999999999864
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=151.12 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=110.6
Q ss_pred ceEEeecceeEEEEEEcCc-CC-C-eeEEeeCCeee-cCCCcEEEEecCC----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-PR-P-EISWMKNGAEI-TDSKACRIFIDEE----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-p~-~-~v~W~~~g~~i-~~~~~~~~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
...+.+|+.+.|.|.+.|. |. | .+.|+++|..+ ............+ .+.|.|.++..+|+|.|+|.|.|..+
T Consensus 22 ~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~ 101 (231)
T 2w59_A 22 PGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL 101 (231)
T ss_dssp HHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred hhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCC
Confidence 3446789999999999985 64 4 99999999877 3322211111111 35799999999999999999999876
Q ss_pred CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 589 STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 589 ~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
.......|.+.. .
T Consensus 102 ~~~~~~~v~~~~-------------------------------------------------------------------~ 114 (231)
T 2w59_A 102 PLPLSKSVYRNT-------------------------------------------------------------------G 114 (231)
T ss_dssp SSCEEEEECCCC-------------------------------------------------------------------S
T ss_pred CCceEEEEecCC-------------------------------------------------------------------C
Confidence 533333322110 0
Q ss_pred CCCCCeeEecc-ceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCCeE----EE--------ee-Cc---eEE
Q psy2776 669 PGQAPLFIERF-EEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKKR----EI--------FD-GE---NII 729 (803)
Q Consensus 669 ~~~~p~~~~~~-~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~----~~--------~~-~~---~~~ 729 (803)
...+|.+.... ....+ .|+.++|.|.+.|+ | .+.|.|++||.++..+.... .. .+ +. .+.
T Consensus 115 ~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~ 193 (231)
T 2w59_A 115 PTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSK 193 (231)
T ss_dssp CCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEE
T ss_pred CCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEE
Confidence 00144433222 11122 35679999999996 4 36899999999986543111 11 22 22 256
Q ss_pred EEEecCCCCCCceeEEEEEEccCcce
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
|.|... ..+|.|.|+|.|.|.....
T Consensus 194 L~i~~~-~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 194 MSVETA-KWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp EEEEHH-HHHTTCCEEEEEECTTSTT
T ss_pred EEEeHH-HcCCCCcEEEEEEcCCCCC
Confidence 888877 4678999999999987654
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=147.91 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=60.3
Q ss_pred ceEEeecceeEEEEEEcCcCCC-eeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP-EISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|++++|.|.+.+.|.+ .+.|+|+ +..+. ...++.........+|.|.++..+|+|.|.|
T Consensus 150 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 229 (257)
T 3gkz_A 150 IMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFC 229 (257)
T ss_dssp EEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred eEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEE
Confidence 5678899999999999998887 8999984 32221 0144555545566789999999999999999
Q ss_pred EEEcCCCCe-EEEEEEEEee
Q psy2776 582 TATNAAGST-SLDLSLQVLG 600 (803)
Q Consensus 582 ~a~n~~g~~-s~s~~l~V~~ 600 (803)
.|.|..... .....|.|..
T Consensus 230 ~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 230 HQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp EECSSSSCEECCCEEEEECC
T ss_pred EEccCCceEEcCCEEEEEEe
Confidence 998854321 2223455544
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=142.68 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=80.4
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++.+|+|.|+|.+.+.. .... .+.|.|.
T Consensus 67 ~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~------------------------------------------~~~L~V~ 103 (180)
T 2dru_A 67 TNGALRIYNVSKEDRGDYYMRMLHET-EDQW------------------------------------------KITMEVY 103 (180)
T ss_dssp TTCCEEECSCCGGGCEEEEEEEESSS-EEEE------------------------------------------EEEEEEE
T ss_pred CCccEEEcCCCHHHCeEEEEEEEcCC-eEEE------------------------------------------EEEEEEE
Confidence 44569999999999999999998765 2222 4556666
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEE
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y 579 (803)
.++..|.+. ..+..+.|.|.+ .| |.|.+.|++++..+.. ....+|.+.. .+|+|.|
T Consensus 104 ~~~~~P~i~-----------~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~---------~~~~~l~~~~--~~d~g~Y 160 (180)
T 2dru_A 104 EMVSKPMIY-----------WECSNATLTCEVLEG-TDVELKLYQGKEHLRS---------LRQKTMSYQW--TNLRAPF 160 (180)
T ss_dssp CCCCCCEEE-----------EEGGGTEEEEECSSC-TTCEEEEEETTEEEEE---------ESSSEEEEEC--SCCSSCE
T ss_pred CCCCCCEEE-----------ecCCCEEEEEEeCCC-CCCEEEEEECCeECcC---------CCCCEEEEEE--hhcCccE
Confidence 555444332 245679999999 66 9999999999988751 1234555533 7899999
Q ss_pred EEEEEcCCCCeEEEEEE
Q psy2776 580 TVTATNAAGSTSLDLSL 596 (803)
Q Consensus 580 ~C~a~n~~g~~s~s~~l 596 (803)
+|.|.|..+..+....+
T Consensus 161 ~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 161 KCKAVNRVSQESEMEVV 177 (180)
T ss_dssp EEEEEETTEEEEEEECC
T ss_pred EEEEecCcCccccceeE
Confidence 99999999877666544
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=145.91 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=111.2
Q ss_pred cCeeeecCCcEEEEEEECcc--CCCeeEEEEcCe--ec-------------ccee--EEEecCeeEEEEecCCCCcceEE
Q psy2776 152 KDSVAGFQSSVTLECVVSGV--PTPDIKWYKDDS--LI-------------KGRN--ITYENNVARFTVVNCSESSEGRY 212 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~~~--~~-------------~~~~--~~~~~~~~~L~i~~v~~~d~G~Y 212 (803)
....+.+|++++|.|.+.+. |.+.+.|+|... .. ...+ ....+...+|.|.+++.+|+|.|
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y 89 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY 89 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence 34778899999999999876 778899998531 11 0112 22233456899999999999999
Q ss_pred EEEEEcCCcCee---eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 213 TCKATNEAGTAE---TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 213 ~C~a~n~~g~~~---~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|.+.|..+... ....|.|...+........+.
T Consensus 90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~-------------------------------------------- 125 (256)
T 3ux9_B 90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVY-------------------------------------------- 125 (256)
T ss_dssp EEEEEETTTTEEEECCCEEEEEC---------------------------------------------------------
T ss_pred EEEEEECCCCceEECCCEEEEEECCCCCcCccceeE--------------------------------------------
Confidence 999999765322 235677765531110000000
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeec--Ceecc-----------------
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKK--GKEIK----------------- 347 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~--g~~l~----------------- 347 (803)
+.........+.+ ...+ ...+.+|++++|.|.+ +.+ .+.+.|+|+ +..+.
T Consensus 126 ------~~~~~~~~~~~~~-~~~~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (256)
T 3ux9_B 126 ------YTKLSSSGSEVQL-VESG-GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADS 197 (256)
T ss_dssp ---------------CCEE-EEEC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGG
T ss_pred ------EeecCCCccceeE-EcCC-CeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCcc
Confidence 0000000001111 1112 2336779999999999 555 789999987 33221
Q ss_pred ccceeEEEEc--CceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 348 ESARHIITSR--GTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 348 ~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
...++.+..+ +....|.|.++..+|+|.|.|.+.|..
T Consensus 198 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 198 VKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred ccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 1124444443 345679999999999999999999864
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=148.67 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=99.6
Q ss_pred eecceeEEEEEEcCcCC----CeeEEeeCCeeecCCCcE-EEEecCCe----EEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 521 SVKSQWKVEVKYFGFPR----PEISWMKNGAEITDSKAC-RIFIDEET----STIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~----~~v~W~~~g~~i~~~~~~-~~~~~~~~----~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.+|+.+.|.|.+.|.++ +.+.|+|+|..+...... ......+. ..|.|......|+|.|+|.|.|..+...
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 67999999999998763 499999999887654211 11111111 1233333334459999999999887653
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
.+..+.... ....
T Consensus 96 ~~~~v~~~~-------------------------------------------------------------------~~~~ 108 (207)
T 1l6x_A 96 IEKTISKAK-------------------------------------------------------------------GQPR 108 (207)
T ss_dssp EEEEECCCC-------------------------------------------------------------------SCCB
T ss_pred eEEEeccCC-------------------------------------------------------------------CCCc
Confidence 332221100 0011
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC--eEEEeeCce---EEEEEecCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK--KREIFDGEN---IILELKEADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~--~~~~~~~~~---~~L~i~~v~~~~D~G~Y 744 (803)
+|.+...+.......|+.++|.|.+.|. |. +.+.|+++|.++..... .....++.. ..|.|... ..+|.|.|
T Consensus 109 ~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~-~~~~~g~Y 187 (207)
T 1l6x_A 109 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKS-RWQQGNVF 187 (207)
T ss_dssp CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHH-HHHTTCCE
T ss_pred CCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHH-HcCCCCEE
Confidence 4554433222222246679999999996 54 38999999998864221 111223322 23556554 23579999
Q ss_pred EEEEEccCcc
Q psy2776 745 KVVATNELGS 754 (803)
Q Consensus 745 ~C~a~N~~G~ 754 (803)
+|.|.|....
T Consensus 188 tC~a~n~~l~ 197 (207)
T 1l6x_A 188 SCSVMHEALH 197 (207)
T ss_dssp EEEEECTTSG
T ss_pred EEEEEcCCcC
Confidence 9999998654
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-15 Score=146.95 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=86.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.+..+..... ...|.|.
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~L~V~ 115 (227)
T 1mju_H 77 STAYMQLSSLTSDDSAVYYCANKLGWFPYWGQ-----------------------------------------GTLVTVS 115 (227)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEETTEEEECC-----------------------------------------CEEEEEC
T ss_pred CeEEEEECCCCcccCEEEEEEECCCCceEEcC-----------------------------------------cEEEEEc
Confidence 56789999999999999999998853221110 2233443
Q ss_pred C-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecC---CeEEEEEeeeccC
Q psy2776 501 S-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDE---ETSTIAIYSVVRA 574 (803)
Q Consensus 501 ~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v~~~ 574 (803)
. ++..|.+..... ...+.+|+.++|.|.+.|. |.+ .+.|+++|..+.......+...+ ..+.|.|.++..+
T Consensus 116 ~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~ 192 (227)
T 1mju_H 116 AAKTTAPSVYPLAP---VCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP 192 (227)
T ss_dssp SSCCBCCEEEEECC---CC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT
T ss_pred CCCCCCCEEEEecC---CccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcC
Confidence 3 222222222111 1235679999999999986 766 99999998764211000011111 1357999998887
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEEeeeEe
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQVLGYII 603 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~ 603 (803)
| |.|+|.|.|..+.......+.+..+|+
T Consensus 193 ~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~ 220 (227)
T 1mju_H 193 S-QSITCNVAHPASSTKVDKKIEPRGPTI 220 (227)
T ss_dssp T-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred C-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence 8 999999999888877888888877764
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=144.01 Aligned_cols=169 Identities=11% Similarity=0.149 Sum_probs=111.3
Q ss_pred cCeeeecCCcEEEEEEECccC--CCeeEEEEcC--ee---c-----------------cceeEEEe----cCeeEEEEec
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SL---I-----------------KGRNITYE----NNVARFTVVN 203 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~---~-----------------~~~~~~~~----~~~~~L~i~~ 203 (803)
....+.+|++++|.|.+.+.| .+.+.|+|+. .. + ...++... .+..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 87 (222)
T 1q9r_B 8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT 87 (222)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence 456788999999999998755 6789999853 11 1 01223322 2356899999
Q ss_pred CCCCcceEEEEEEEcCCc-----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccc
Q psy2776 204 CSESSEGRYTCKATNEAG-----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 278 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g-----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (803)
++.+|+|.|.|.+.|..+ .......|.|...+. .
T Consensus 88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--~--------------------------------------- 126 (222)
T 1q9r_B 88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKT--T--------------------------------------- 126 (222)
T ss_dssp CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCC--B---------------------------------------
T ss_pred CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCC--C---------------------------------------
Confidence 999999999999998764 122335666654210 0
Q ss_pred cceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEE
Q psy2776 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIIT 355 (803)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~ 355 (803)
.+.+....+. ..+.+|+.+.|.|.+ + .|.+ .+.|+++|..+.........
T Consensus 127 --------------------------~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~ 179 (222)
T 1q9r_B 127 --------------------------PPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL 179 (222)
T ss_dssp --------------------------CCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEE
T ss_pred --------------------------CCeEEEcccc-ccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccc
Confidence 0000000111 113469999999999 5 4887 99999999877532111122
Q ss_pred EcCc---eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 356 SRGT---QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 356 ~~~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
.++. ...|.|..+..+| |.|+|.|.|..+...+
T Consensus 180 ~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~ 215 (222)
T 1q9r_B 180 QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV 215 (222)
T ss_dssp ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcE
Confidence 3332 2458899999889 9999999998876543
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-15 Score=170.71 Aligned_cols=165 Identities=14% Similarity=0.180 Sum_probs=119.8
Q ss_pred ceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecC------------CCcEEEEecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITD------------SKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~------------~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
...+.+|++++|.|.+ .+.|.+.+.|+|++..+.. ..+..+. ..++|.|.+++.+|+|.|+|.|
T Consensus 375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G~Y~C~~ 451 (581)
T 3o3u_N 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL---PNGSLFLPAVGIQDEGIFRCQA 451 (581)
T ss_dssp EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC---TTSCEEESSCCGGGCEEEEEEE
T ss_pred ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc---CCceEEEeccccccCeEEEEEE
Confidence 4678899999999998 7889999999998763211 1122221 1247999999999999999999
Q ss_pred EcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 584 TNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 584 ~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
.|..|.. ...+.|.|..+|
T Consensus 452 ~n~~~~~~~~~~~l~V~~~~------------------------------------------------------------ 471 (581)
T 3o3u_N 452 MNRNGKETKSNYRVRVYQIP------------------------------------------------------------ 471 (581)
T ss_dssp ECTTSCEEEEEEEEEEEBCC------------------------------------------------------------
T ss_pred EcCCCceeEEEEEEEEEcCC------------------------------------------------------------
Confidence 9999987 778888886643
Q ss_pred cccCCCCCCCCeeEeccceeEEecCC-eEEEEEEEee-cCCCceEEeeCCeeccCCCC-eEEEe------e-C---ceEE
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKA-SPAPSIVWFRNNKPLLSSPK-KREIF------D-G---ENII 729 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~-~~~~~------~-~---~~~~ 729 (803)
..|.+..... .+.+|+ .+.|.|.+.| .|.|.+.|++||.++..... +.+.. + + -.++
T Consensus 472 --------~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~ 541 (581)
T 3o3u_N 472 --------GKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSE 541 (581)
T ss_dssp --------CCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEE
T ss_pred --------CCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEE
Confidence 1344433322 244554 5567999998 59999999999999875433 32221 1 1 1357
Q ss_pred EEEecCCC-CCCceeEEEEEEccCcce
Q psy2776 730 LELKEADS-ETDAGDYKVVATNELGSA 755 (803)
Q Consensus 730 L~i~~v~~-~~D~G~Y~C~a~N~~G~~ 755 (803)
|.|..+ + .++.|.|+|.|+|.++..
T Consensus 542 L~i~~~-~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 542 LMVTPA-RGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp EEECCC-TTSCSCCCEEEEEECSSCSS
T ss_pred EEEEec-cccCCCceEEEEEeccCCCC
Confidence 999988 5 555899999999997544
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=146.05 Aligned_cols=178 Identities=11% Similarity=0.150 Sum_probs=113.2
Q ss_pred eeccCcCeeeecCCcEEEEEEECccC-----CCeeEEEEcC--eecc-------------ceeEE--EecCeeEEEEecC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVP-----TPDIKWYKDD--SLIK-------------GRNIT--YENNVARFTVVNC 204 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p-----~p~i~W~~~~--~~~~-------------~~~~~--~~~~~~~L~i~~v 204 (803)
+...+..+.+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ..++. ..++..+|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 83 (247)
T 1svz_A 4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 83 (247)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence 34456678889999999999999877 6889999853 1110 11222 2344568999999
Q ss_pred CCCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceee
Q psy2776 205 SESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (803)
+.+|+|.|.|.+.|..+.. ...+.|.|...+...... .
T Consensus 84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~-----~------------------------------------ 122 (247)
T 1svz_A 84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGG-----S------------------------------------ 122 (247)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------------------------------------------
T ss_pred CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccc-----c------------------------------------
Confidence 9999999999999976542 223566665442100000 0
Q ss_pred ccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeecC--eecc-----------
Q psy2776 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKKG--KEIK----------- 347 (803)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~g--~~l~----------- 347 (803)
....+.+ .+...+. ..+.+|++++|.|.+ +.+ .+.+.|+|++ ..+.
T Consensus 123 ----------------~~~~~~~-~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~ 184 (247)
T 1svz_A 123 ----------------GGGGSEV-QLQQSGP-ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDE 184 (247)
T ss_dssp ---------------------CC-EEEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCC
T ss_pred ----------------ccccCce-EEeCCCc-eeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCc
Confidence 0000001 1112222 346789999999999 654 5799999963 2110
Q ss_pred ------ccceeEEEE--cCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 ------ESARHIITS--RGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 ------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+.. .+....|.|.++..+|+|.|.|.+.|.
T Consensus 185 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 185 PTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred cccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 023444443 344578999999999999999999985
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=151.70 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=108.4
Q ss_pred EeecceeEEEEEEcCc---CCC-eeEEeeCCeeecCCCcE-EEEecC----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGF---PRP-EISWMKNGAEITDSKAC-RIFIDE----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~---p~~-~v~W~~~g~~i~~~~~~-~~~~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+.++|.|.+.|. |.+ .+.|+|++..+...... ...... ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 5689999999999987 766 89999998776532110 001111 23589999999999999999999988764
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.... ...
T Consensus 109 ~~~~~v~~~~-------------------------------------------------------------------~~~ 121 (239)
T 1i1c_A 109 PIEKSISKPE-------------------------------------------------------------------GTP 121 (239)
T ss_dssp CEEEEECCCS-------------------------------------------------------------------SCC
T ss_pred CcEEEEecCC-------------------------------------------------------------------CCC
Confidence 2222221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC--eEEEeeCce---EEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK--KREIFDGEN---IILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~--~~~~~~~~~---~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|. |. ..|.|++||.++..... .....++.. ..|.|... ..+|.|.
T Consensus 122 ~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~-~~~~~g~ 200 (239)
T 1i1c_A 122 RGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKE-TWQQGNT 200 (239)
T ss_dssp BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH-HHHTTCC
T ss_pred cCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChh-hcCCCCE
Confidence 25555444333223358899999999995 54 37999999998854321 111223332 23555544 2347899
Q ss_pred EEEEEEccCcce
Q psy2776 744 YKVVATNELGSA 755 (803)
Q Consensus 744 Y~C~a~N~~G~~ 755 (803)
|+|.|.|.....
T Consensus 201 YtC~v~n~~l~~ 212 (239)
T 1i1c_A 201 FTCSVLHEGLEN 212 (239)
T ss_dssp EEEEEECTTSGG
T ss_pred EEEEEECCCCCC
Confidence 999999987653
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=143.40 Aligned_cols=169 Identities=11% Similarity=0.140 Sum_probs=109.2
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eec-----------------cceeEEEe----cCeeEEEEecCC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLI-----------------KGRNITYE----NNVARFTVVNCS 205 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~-----------------~~~~~~~~----~~~~~L~i~~v~ 205 (803)
+....+.+|++++|.|.+.+.| .+.+.|+|++ ... ...++... .+..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 4556788999999999998765 4789999853 111 01223222 234689999999
Q ss_pred CCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecc
Q psy2776 206 ESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARW 285 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (803)
.+|+|.|+|.+.|.. .......|.|...+. .
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~--~---------------------------------------------- 117 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKT--T---------------------------------------------- 117 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCCC--B----------------------------------------------
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCCC--C----------------------------------------------
Confidence 999999999999864 112234566653210 0
Q ss_pred ccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cce-eeEEeecCeeccccceeEEEEcCc---
Q psy2776 286 TSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PDI-QVKWLKKGKEIKESARHIITSRGT--- 359 (803)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~~-~i~W~~~g~~l~~~~~~~~~~~~~--- 359 (803)
. +.+....+. ..+.+|+.+.|.|.+ +. |.+ .+.|+++|..+.......+...+.
T Consensus 118 -----------------~--P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 3d9a_H 118 -----------------P--PSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL 177 (210)
T ss_dssp -----------------C--CEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE
T ss_pred -----------------C--CEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEE
Confidence 0 000000111 123469999999999 54 877 999999988653211111112232
Q ss_pred eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 360 ~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
...|.|..+..+| |.|+|.|.|..+...+
T Consensus 178 ~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~ 206 (210)
T 3d9a_H 178 SSSVTVPSSTWPS-ETVTCNVAHPASSTKV 206 (210)
T ss_dssp EEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred EEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence 3468999988877 9999999998877554
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=149.74 Aligned_cols=180 Identities=14% Similarity=0.185 Sum_probs=117.4
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEE----------------cCeeccc----eeEEE---ecCeeEEEEec
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK----------------DDSLIKG----RNITY---ENNVARFTVVN 203 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~----------------~~~~~~~----~~~~~---~~~~~~L~i~~ 203 (803)
+...+..+.+.+|++++|.|.+.+.+.+.+.|+| ++..... .++.. ..+..+|.|.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 83 (246)
T 4dzb_B 4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS 83 (246)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence 4445667888999999999999999999999999 2221111 22222 13456899999
Q ss_pred CCCCcceEEEEEEEcCCcCe----eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 204 CSESSEGRYTCKATNEAGTA----ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~~----~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
++.+|+|.|.|.+.|..+.. .....|.|........
T Consensus 84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~---------------------------------------- 123 (246)
T 4dzb_B 84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVF---------------------------------------- 123 (246)
T ss_dssp CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCB----------------------------------------
T ss_pred CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCccc----------------------------------------
Confidence 99999999999999865421 1234565554210000
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc--eeeEEeecCeeccccceeEEE-
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD--IQVKWLKKGKEIKESARHIIT- 355 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~--~~i~W~~~g~~l~~~~~~~~~- 355 (803)
.+.+....+....+.+|+.+.|.|.+ +.|+ ..+.|+|+|..+.........
T Consensus 124 -------------------------~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~ 178 (246)
T 4dzb_B 124 -------------------------PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 178 (246)
T ss_dssp -------------------------CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSC
T ss_pred -------------------------CCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCccccccc
Confidence 00111111222334559999999999 5443 389999999998764332211
Q ss_pred -------EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeee
Q psy2776 356 -------SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 356 -------~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~ 391 (803)
.++.. ..|.|.....+| .|.|+|.+.|........|
T Consensus 179 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~~~~ 225 (246)
T 4dzb_B 179 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEW 225 (246)
T ss_dssp EESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTTSCC
T ss_pred ccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCcccc
Confidence 12322 347888888888 9999999999876655555
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-14 Score=144.43 Aligned_cols=188 Identities=11% Similarity=0.109 Sum_probs=114.6
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc--------------ceeEEE----ecCeeEEEEecCC
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK--------------GRNITY----ENNVARFTVVNCS 205 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~--------------~~~~~~----~~~~~~L~i~~v~ 205 (803)
.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|... ... ..++.. .....+|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 45556677889999999999999988999999998431 100 111111 1345689999999
Q ss_pred CCcceEEEEEEEcCCcCee----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 206 ESSEGRYTCKATNEAGTAE----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~~----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
.+|+|.|.|.+.|..+... ....|.|........ +...
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~--------~~~~------------------------------ 126 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSG--------GGGS------------------------------ 126 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC------------------------------------------------
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcC--------CCCc------------------------------
Confidence 9999999999999765321 124555543100000 0000
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecC--eecc------------
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKG--KEIK------------ 347 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g--~~l~------------ 347 (803)
...... ..+....+...|....+.+|++++|.|.+....+.+.|+|.. ..+.
T Consensus 127 -------------~~~~~~-~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 192 (256)
T 3tf7_C 127 -------------GGGGSG-GGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLIYYSYGAGNLQ 192 (256)
T ss_dssp -------------------------CCEEESCSEEEEETTCCEEECEEECSCCSEEEEEEECTTSCEEEEEEEESTTCCE
T ss_pred -------------CcccCC-CCcCccEEEecCCEEEEeCCCcEEEEEEcCCCceEEEEEEECCCCCeEEEEEEcCCCcee
Confidence 000000 000111223334555666899999999993337799999842 1110
Q ss_pred ---ccceeEEEE-cCceeEEEEeecCCCCCccEEEEEecccc
Q psy2776 348 ---ESARHIITS-RGTQRKLVIKRVTQDDETDIGVLALNVKS 385 (803)
Q Consensus 348 ---~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~~~~~ 385 (803)
...++.+.. ......|.|.++..+|+|.|.|.+.|..+
T Consensus 193 ~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 234 (256)
T 3tf7_C 193 IGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG 234 (256)
T ss_dssp ECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred cCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence 011222222 23456899999999999999999998754
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=123.71 Aligned_cols=94 Identities=20% Similarity=0.459 Sum_probs=87.4
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n 83 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKT-DTSDSGLYTCTVKN 83 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCC-CcccCEEEEEEEEe
Confidence 37888888888999999999999999999999999999999999889998888888889999999 78999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
..|..+..+.|.|++
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 84 SAGSVSSSCKLTIKA 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEeEEEEEEEEe
Confidence 999999999998863
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=123.87 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=84.3
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+.. .+....|.|.++ +.+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~ 82 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV-TGEDSASIMVKAI 82 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSC-CGGGCEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCC-CcCCCEEEEEEEE
Confidence 37889888889999999999999999999999999999999998887766543 466778999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|.+|.....+.|.|..
T Consensus 83 N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 83 NIAGETSSHAFLLVQA 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCcEEEEEEEEEec
Confidence 9999999999998853
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=145.67 Aligned_cols=181 Identities=14% Similarity=0.139 Sum_probs=112.8
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--ee---ec-------------CCCcEEEEecC--CeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AE---IT-------------DSKACRIFIDE--ETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~---i~-------------~~~~~~~~~~~--~~~~L~i~~v~~~ 574 (803)
...+.+|++++|.|.+.+. +.+.+.|+|.. .. +. ...++.+..+. +...|.|.+++.+
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 89 (230)
T 1ypz_F 10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE 89 (230)
T ss_dssp EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred EEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChh
Confidence 5778999999999999875 56789999853 11 10 12344444322 4578999999999
Q ss_pred cCeEEEEEEEcCC--CC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 575 DTSTYTVTATNAA--GS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 575 dsG~Y~C~a~n~~--g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
|+|.|.|.+.+.. .. ......|.|.... .+.
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~--------------------------------------------~~l- 124 (230)
T 1ypz_F 90 DEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSD--------------------------------------------KRL- 124 (230)
T ss_dssp GCSEEEEEECCTTTCCCCEECSCEEEEEECCC--------------------------------------------TTC-
T ss_pred hCEEEEEEEECCCCCcccccCCCEEEEEeccc--------------------------------------------ccC-
Confidence 9999999999851 11 1122355553100 000
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEee-CCeeccCCCCeEE-EeeCc
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFR-NNKPLLSSPKKRE-IFDGE 726 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~-~~~~l~~~~~~~~-~~~~~ 726 (803)
....+ ..|.+.. +....+..|+.++|.|.+.|. |. +.|.|++ +|..+..+....+ ..++.
T Consensus 125 --------------~~~~~-p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~ 188 (230)
T 1ypz_F 125 --------------DADIS-PKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDT 188 (230)
T ss_dssp --------------CSCCS-CCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTE
T ss_pred --------------cccCC-CCceEEC-CCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCC
Confidence 00000 0222322 333446679999999999987 76 5899999 8877753321111 22222
Q ss_pred ---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 727 ---NIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 727 ---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
...|.|... .. | |.|+|.|.|..+.......+
T Consensus 189 ~~~~s~L~i~~~-~~-~-~~ytC~v~~~~~~~~~~~~~ 223 (230)
T 1ypz_F 189 YMKFSWLTVPER-AM-G-KEHRCIVKHENNKGGADQAI 223 (230)
T ss_dssp EEEEEEEEECGG-GT-T-SCEEEEEECSSCTTTSCEEE
T ss_pred EEEEEEEEEEhh-hC-C-CEEEEEEEECCCCCceeEee
Confidence 246888887 43 4 99999999998865444433
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=152.64 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=115.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---e-----------c---CCCcEEEEec-CCeEEEEEeeeccCc
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---I-----------T---DSKACRIFID-EETSTIAIYSVVRAD 575 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i-----------~---~~~~~~~~~~-~~~~~L~i~~v~~~d 575 (803)
....+.+|+++.|.|.+.+.|.+.+.|+|++ .. + . ...++.+..+ ....+|.|.+++.+|
T Consensus 32 ~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D 111 (279)
T 2wbj_D 32 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPED 111 (279)
T ss_dssp SEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGG
T ss_pred CeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccC
Confidence 3578899999999999988888999999864 11 0 0 1245555432 356799999999999
Q ss_pred CeEEEEEEEcCCC----C--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 576 TSTYTVTATNAAG----S--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 576 sG~Y~C~a~n~~g----~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|.|.|.|.|..+ . ......|.|....
T Consensus 112 ~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------- 144 (279)
T 2wbj_D 112 SSFYICSARDLTSGANNEQFFGPGTRLTVTEDL----------------------------------------------- 144 (279)
T ss_dssp CEEEEEEEEETTCBTSCCEEECCCEEEEEESCG-----------------------------------------------
T ss_pred CEEEEEEEcccccCCccceeeCCCEEEEEecCC-----------------------------------------------
Confidence 9999999999432 1 1122345553310
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeE---EE-
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR---EI- 722 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~---~~- 722 (803)
....+|.+... +....+.+|+.++|.|.+.|. |. +.|.|++||.++..+.... ..
T Consensus 145 ------------------~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~ 206 (279)
T 2wbj_D 145 ------------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKE 206 (279)
T ss_dssp ------------------GGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEES
T ss_pred ------------------CCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccc
Confidence 00114555432 333445679999999999997 54 6999999999886542210 00
Q ss_pred ----eeCc---eEEEEEecCCCCC-CceeEEEEEEccCccee
Q psy2776 723 ----FDGE---NIILELKEADSET-DAGDYKVVATNELGSAT 756 (803)
Q Consensus 723 ----~~~~---~~~L~i~~v~~~~-D~G~Y~C~a~N~~G~~~ 756 (803)
.++. ...|.|... ..+ |.|.|+|.|.|......
T Consensus 207 ~~~~~~~~~~~~s~L~i~~~-~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 207 QPALNDSRYSLSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp STTSTTCCEEEEEEEECCST-TTTCTTCEEEEEEEECCBCTT
T ss_pred cccCCCCcEEEEEEEEEChH-HhccCCCEEEEEEEeCCCCCC
Confidence 1222 235788776 343 57889999999877654
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-15 Score=147.06 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=58.7
Q ss_pred CCCCeeeccCcCee--eecCCcEEEEEEECcc---CC-CeeEEEEcCeeccceeEE----Ee----cCeeEEEEecCCCC
Q psy2776 142 AEAPVIQEPLKDSV--AGFQSSVTLECVVSGV---PT-PDIKWYKDDSLIKGRNIT----YE----NNVARFTVVNCSES 207 (803)
Q Consensus 142 ~~~p~i~~~~~~~~--v~~G~~~~L~C~~~g~---p~-p~i~W~~~~~~~~~~~~~----~~----~~~~~L~i~~v~~~ 207 (803)
..+|.+...+.... +.+|+.++|.|.+.|. |. +.|.|+|++..+...... .. .....|.|.+++.+
T Consensus 7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 86 (218)
T 2rgs_A 7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM 86 (218)
T ss_dssp --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence 34555554444444 7899999999999987 33 789999999876532110 00 12357999999999
Q ss_pred cceEEEEEEEcCCcCe
Q psy2776 208 SEGRYTCKATNEAGTA 223 (803)
Q Consensus 208 d~G~Y~C~a~n~~g~~ 223 (803)
|+|.|+|.|.|..+..
T Consensus 87 D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 87 SGKEFKCKVNNKDLPS 102 (218)
T ss_dssp TTCCEEEEEEETTCSS
T ss_pred CCCeEEEEEECCcCCC
Confidence 9999999999987654
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-15 Score=144.71 Aligned_cols=178 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc--eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+. ++.+..
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~--------------------------------- 71 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN--------------------------------- 71 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEE---------------------------------
T ss_pred CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEec---------------------------------
Confidence 444667789999999999 89999999999999887542 222211
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
..+...|.|.++..+|+|.|+|.|.|..|....
T Consensus 72 -----------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~------------------ 104 (215)
T 3mtr_A 72 -----------------------------TPSASYLEVTPDSENDFGNYNCTAVNRIGQESL------------------ 104 (215)
T ss_dssp -----------------------------ETTEEEEEECCCSGGGCEEEEEEEECSSCEEEE------------------
T ss_pred -----------------------------CCCeeEEEEecCChhhCeEEEEEEEECCCceEE------------------
Confidence 123456899999999999999999999998765
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc----CcCCC--eeEEe
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF----GFPRP--EISWM 543 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~----g~p~~--~v~W~ 543 (803)
.+.|.+..+|..|... .....+..+.|.|... +.|.. .+.|.
T Consensus 105 ------------------------~~~l~v~~~P~~p~~~--------~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~ 152 (215)
T 3mtr_A 105 ------------------------EFILVQADTPSSPSID--------QVEPYSSTAQVQFDEPEATGGVPILKYKAEWR 152 (215)
T ss_dssp ------------------------EEEEEECCCCCCCEEE--------EEEEETTEEEEEEECCSCCCSSCEEEEEEEEE
T ss_pred ------------------------EEEEEECCCCCCCcce--------EEEEecceEEEEEecCCccCCCceEEEEEEEE
Confidence 5666777777665432 1124467889999732 22333 46788
Q ss_pred eCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 544 ~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+++..........+........|.|.++...|.|.|+|.|.|..|....+..+.|..+|
T Consensus 153 ~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 153 AVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp ETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred ECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 87754221111110011112689999999999999999999999988777776666544
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=147.41 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=104.9
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eecc-----c--------------eeEE---EecCeeEEE
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIK-----G--------------RNIT---YENNVARFT 200 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~-----~--------------~~~~---~~~~~~~L~ 200 (803)
|.+...+..+.+.+|++++|.|.+.+.+.+.+.|+|.. .... . .... ......+|.
T Consensus 3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (259)
T 3omz_A 3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI 82 (259)
T ss_dssp --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence 44555667788999999999999999888899999832 1110 0 0000 112345799
Q ss_pred EecCCCCcceEEEEEEEcCCcC---eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecc
Q psy2776 201 VVNCSESSEGRYTCKATNEAGT---AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVS 277 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~g~---~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (803)
|.+++.+|+|.|.|.+.|..+. ......|.|......+........
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~------------------------------- 131 (259)
T 3omz_A 83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAA------------------------------- 131 (259)
T ss_dssp ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC--------------------------------------------
T ss_pred ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccc-------------------------------
Confidence 9999999999999999998763 223355666654211100000000
Q ss_pred ccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCceeeEEeecC--eecc------
Q psy2776 278 KLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDIQVKWLKKG--KEIK------ 347 (803)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~i~W~~~g--~~l~------ 347 (803)
.......+...+....+.+|++++|.|.+ + .|.+.+.|+|.+ ..+.
T Consensus 132 ------------------------~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~ 187 (259)
T 3omz_A 132 ------------------------KKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQG 187 (259)
T ss_dssp -----------------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEE
T ss_pred ------------------------cccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEEC
Confidence 00001122233445567789999999998 4 388999999853 1111
Q ss_pred ------ccceeEEE--EcCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 ------ESARHIIT--SRGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 ------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+. ..+....|.|.++..+|+|.|.|.+.+.
T Consensus 188 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 188 SDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp TTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 01233333 1233467999999999999999999853
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-15 Score=152.02 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=70.7
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
++...|+|.+++.+|+|.|.|.+.+..+..... ...|.|
T Consensus 90 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~V 128 (233)
T 3bqu_C 90 GTDFVFTIENMLSEDVADYYCLQSDNLPYTFGG-----------------------------------------GTNLEI 128 (233)
T ss_dssp EEEEEEC-----CCCCSEEEEEECSSSSCCBCC-----------------------------------------CCBC--
T ss_pred CCEEEEEECCCCHHHCEEEEEEEecCCceeecC-----------------------------------------CEEEEE
Confidence 445679999999999999999999875432211 223344
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCC-CcEE-EEecCC-----eEEEEEee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDS-KACR-IFIDEE-----TSTIAIYS 570 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~-~~~~-~~~~~~-----~~~L~i~~ 570 (803)
..++..|.+.+... ...+.+|+.++|.|.+.|.+++ .+.|+|+|..+..+ .... .....+ .+.|.|..
T Consensus 129 ~~~~~~p~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~ 205 (233)
T 3bqu_C 129 KRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 205 (233)
T ss_dssp -CCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEH
T ss_pred eCCCCCCEEEEeCC---CHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECH
Confidence 43322222222111 1112369999999999986543 79999999887654 1111 111111 25799999
Q ss_pred eccCcCeEEEEEEEcCCCC
Q psy2776 571 VVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~ 589 (803)
+..+|+|.|+|.|.|....
T Consensus 206 ~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 206 DEYERHNSYTCEATHKTST 224 (233)
T ss_dssp HHHHTCCCEEEEEEEC---
T ss_pred HHhCCCCCEEEEEEeCCCC
Confidence 9999999999999997544
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=126.62 Aligned_cols=99 Identities=23% Similarity=0.420 Sum_probs=85.3
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEee-CceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFD-GENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+..+ .....|.|.++ +.+|+|.|+|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~ 84 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS-TLDDDGNYTIM 84 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSC-CTTTCSCCEEE
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCC-ChhhCEEEEEE
Confidence 3488888888889999999999999999999999999999999876 456666654 44568999999 79999999999
Q ss_pred EEccCcceeeeEEEEEEeeccC
Q psy2776 748 ATNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~~~~~~ 769 (803)
|.|.+|..+..+.|.|...+..
T Consensus 85 a~N~~g~~~~~~~l~V~~~~~~ 106 (110)
T 2dm2_A 85 AANPQGRISCTGRLMVQAVNSG 106 (110)
T ss_dssp EECTTCCEEECCCEEEECCSCC
T ss_pred EEECCCeEEEEEEEEEECCCCC
Confidence 9999999999999999754433
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=143.98 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=84.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++.+|+|.|.|.+.+..+...... ....|.|.
T Consensus 79 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---------------------------------------~~~~l~V~ 119 (220)
T 1pz5_B 79 SSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWG---------------------------------------QGTSVTVS 119 (220)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTSSEEEEC---------------------------------------CCEEEEEC
T ss_pred CeEEEEEccCCHHHCEEEEEEEecCCcccceEC---------------------------------------CCEEEEEc
Confidence 456899999999999999999998753221100 02233333
Q ss_pred C-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeec--CCCcEEE-EecCCeEEEEEeeeccC
Q psy2776 501 S-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEIT--DSKACRI-FIDEETSTIAIYSVVRA 574 (803)
Q Consensus 501 ~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~--~~~~~~~-~~~~~~~~L~i~~v~~~ 574 (803)
. ++..|.+..... ...+.+|+.+.|.|.+.|. |.| .+.|++++..+. ....... ......+.|.|.++..+
T Consensus 120 ~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~ 196 (220)
T 1pz5_B 120 SATTTAPSVYPLVP---GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWP 196 (220)
T ss_dssp SSCCBCCEEEEECC---CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTT
T ss_pred cCCCCCCeEEEccc---ccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcC
Confidence 2 222222222111 1234679999999999997 888 999999886310 0010000 00001467999998886
Q ss_pred cCeEEEEEEEcCCCCeEEEEEE
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
| |.|+|.|.|..|....++.+
T Consensus 197 ~-g~Y~C~a~n~~~~~~~~~~~ 217 (220)
T 1pz5_B 197 S-QTVICNVAHPASKVDLIKEI 217 (220)
T ss_dssp T-SCCEEEEEEGGGTEEEEEEC
T ss_pred C-ceEEEEEEECCccEeeeecC
Confidence 6 99999999999976665543
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=120.09 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=79.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
..+|.|...+.+..+.+|+++.|.|.+.+ |.+.+.|+|||.+|..+.++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v-~~~D~G~Y~C~a~ 80 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNC-QLGMTGEVSFQAA 80 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSC-CGGGCEEEEEEET
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCC-ChhhCEEEEEEEC
Confidence 35899999999999999999999999986 558899999999999999999988888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|. ..++.|.|.
T Consensus 81 n~----~~sa~L~V~ 91 (93)
T 1waa_A 81 NT----KSAANLKVK 91 (93)
T ss_dssp TE----EEEEEEEEE
T ss_pred CC----cEEEEEEEE
Confidence 95 456777775
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-15 Score=150.22 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=109.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---e---cC---------CC-cEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---I---TD---------SK-ACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i---~~---------~~-~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+++.|.|.+.+.+.+.+.|+|.. .. + .. .. ++.+....... |.|.+++.+|+|.
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~ 88 (253)
T 3to4_D 10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRT 88 (253)
T ss_dssp EEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEE
T ss_pred eEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeE
Confidence 577899999999999988888999999831 11 0 00 01 34333332233 9999999999999
Q ss_pred EEEEEEcCCC---C---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 579 YTVTATNAAG---S---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 579 Y~C~a~n~~g---~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
|.|.+.+..+ . ......|.|....
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~-------------------------------------------------- 118 (253)
T 3to4_D 89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDL-------------------------------------------------- 118 (253)
T ss_dssp EEEEEECSCCSTTCCEEECCCEEEEEESCS--------------------------------------------------
T ss_pred EEEEEecCCCCcccceEECCCEEEEEecCC--------------------------------------------------
Confidence 9999997654 1 1122244443200
Q ss_pred ccceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEEE-------
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREI------- 722 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~------- 722 (803)
....+|.+... +....+..|+.++|.|.+.| .|.+ .+.|+++|.++..+......
T Consensus 119 ---------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~ 183 (253)
T 3to4_D 119 ---------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPA 183 (253)
T ss_dssp ---------------TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTT
T ss_pred ---------------CCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceeccccccccccc
Confidence 00124444332 22334456799999999999 5666 89999999998653221100
Q ss_pred -eeCce---EEEEEecCCCCCC-ceeEEEEEEccCcc
Q psy2776 723 -FDGEN---IILELKEADSETD-AGDYKVVATNELGS 754 (803)
Q Consensus 723 -~~~~~---~~L~i~~v~~~~D-~G~Y~C~a~N~~G~ 754 (803)
.++.. +.|.|... ..+| .|.|+|.|.|..-.
T Consensus 184 ~~~g~~~~~s~l~i~~~-~~~d~~~~ytC~v~h~~l~ 219 (253)
T 3to4_D 184 LNDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLS 219 (253)
T ss_dssp CTTCCEEEEEEEEEEHH-HHTCTTCEEEEEEEECCBC
T ss_pred CCCCCEEEEEEEEECHH-HhccCCCEEEEEEEeCCCC
Confidence 12222 46888877 4456 78999999997544
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-14 Score=143.88 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=115.5
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccC------CCeeEEEEcC--eecc-------------ceeEEE--ecCeeEEEE
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVP------TPDIKWYKDD--SLIK-------------GRNITY--ENNVARFTV 201 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p------~p~i~W~~~~--~~~~-------------~~~~~~--~~~~~~L~i 201 (803)
+.+...+..+.+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ..++.. .+...+|.|
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I 85 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI 85 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence 4455567778899999999999999877 6789999953 2110 122222 334578999
Q ss_pred ecCCCCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccc
Q psy2776 202 VNCSESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 280 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (803)
.+++.+|+|.|.|.+.|..+.. .....|.|...+...... + .....
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~------~-~~~~~-------------------------- 132 (264)
T 2gjj_A 86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGG------G-SGGGG-------------------------- 132 (264)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC----------------------------------------------
T ss_pred CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccc------c-ccccc--------------------------
Confidence 9999999999999999876532 123566665542100000 0 00000
Q ss_pred eeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeecC--eecc-------c
Q psy2776 281 WLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKKG--KEIK-------E 348 (803)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~g--~~l~-------~ 348 (803)
.....+.+. +...+. ..+.+|++++|.|.+ +.+ .+.+.|+|+. ..+. .
T Consensus 133 ------------------~~~~~~~~~-~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~ 192 (264)
T 2gjj_A 133 ------------------SGGGGSEVQ-LQQSGP-EVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSS 192 (264)
T ss_dssp ------------------------CCE-EEECCC-EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETT
T ss_pred ------------------cccccCcEE-EeCCCC-EEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEecc
Confidence 000001111 112222 256789999999999 665 3799999973 2211 0
Q ss_pred ----------cceeEEEE--cCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 349 ----------SARHIITS--RGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 349 ----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
..++.+.. .+....|.|.++..+|+|.|.|.+.|.
T Consensus 193 ~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 193 YATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp TCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 12333332 334678999999999999999999985
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=145.71 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=77.0
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee--ccC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL--QIQ 500 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~ 500 (803)
..|+|.+++.+|+|.|+|.|.|..+...... .+.+ .+.
T Consensus 68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~----------------------------------------~v~~~~~~~ 107 (207)
T 2vol_A 68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEK----------------------------------------TISKTKGRP 107 (207)
T ss_dssp EEEECCHHHHHTTCCEEEEEECTTCSSCEEE----------------------------------------EECCCCCCC
T ss_pred EEEEEehhHcCCCCEEEEEEEccCCCCceEE----------------------------------------EeccCCCCC
Confidence 3599999999999999999999877532211 1111 233
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeecc
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVR 573 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~ 573 (803)
.+|.+ .+..... . ...|+.+.|.|.+.|. |+ +.+.|+|+|..+............+ .+.|.|.....
T Consensus 108 ~~P~v---~~~~~~~--~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~ 181 (207)
T 2vol_A 108 KAPQV---YTLPPPK--E-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW 181 (207)
T ss_dssp BCCEE---EEECCCT--G-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred cCCeE---EEeCCCH--H-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHc
Confidence 33332 1111111 1 1258999999999985 44 3899999999875432211111222 13466666666
Q ss_pred CcCeEEEEEEEcCCCC
Q psy2776 574 ADTSTYTVTATNAAGS 589 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~ 589 (803)
+|.|.|+|.|.|....
T Consensus 182 ~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 182 EAGNTFTCSVLHEGLH 197 (207)
T ss_dssp SSCCEEEEEEECTTSG
T ss_pred CCCCEEEEEEECCCCC
Confidence 7899999999998654
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=123.70 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=82.4
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+.+..+.+|+++.|.|.+ .|.|.+.|+|||.+|..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 82 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDA 82 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSC-CGGGCSEEEEEESS
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCC-ChhhCEEEEEEEcC
Confidence 47889999999999999999999999 8999999999999999999999998888889999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
. ..+.++.|.|..
T Consensus 83 ~--~~~~~a~L~V~~ 95 (100)
T 2yuz_A 83 Y--NVTLPAKVHVIS 95 (100)
T ss_dssp S--CCCEEEEEEEEC
T ss_pred C--CeeEEEEEEEeC
Confidence 8 567788888864
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=122.89 Aligned_cols=94 Identities=28% Similarity=0.453 Sum_probs=82.7
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+..+.+ +.+..++...+|.|.++ +.+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~ 82 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA-ERGDAGFYTCKAV 82 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSC-CGGGCEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccC-CcCCCEEEEEEEE
Confidence 378888888889999999999999999999999999999999877654 44444666778999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|.+|..+.++.|.|..
T Consensus 83 N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 83 NEYGARQCEARLEVRG 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCceeEEEEEEEEC
Confidence 9999999999998864
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=125.77 Aligned_cols=97 Identities=31% Similarity=0.491 Sum_probs=85.0
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeC-ceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDG-ENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..+|.|+..+....+.+|+++.|.|.+.|.|.|.+.|++++..+.. ..++.+..++ ...+|.|.++ +.+|+|.|+|.
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~ 91 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV-NKKDAGWYTVS 91 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEE-CGGGCEEEEEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCC-CcccCEEEEEE
Confidence 3489999999999999999999999999999999999999999875 4667666554 3568999999 79999999999
Q ss_pred EEccCcceeeeEEEEEEeec
Q psy2776 748 ATNELGSATHGARVTVDVEK 767 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~~~~ 767 (803)
|.|..|..+..+.|.|..++
T Consensus 92 a~N~~G~~~~~~~l~V~~~p 111 (116)
T 2kkq_A 92 AVNEAGVTTCNTRLDVTARP 111 (116)
T ss_dssp EEETTEEEEEEEEEEEECCS
T ss_pred EEcCCCeEEEEEEEEEeCCC
Confidence 99999999999999987544
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=121.38 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=76.9
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..|.... ++.+...++.++|.|.++..+|+|.|+|.|+|..|..+.+
T Consensus 13 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 92 (100)
T 3knb_A 13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT 92 (100)
T ss_dssp SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEE
Confidence 46788999999999999999999999999999997653 5677777778899999999999999999999999999999
Q ss_pred EEEEEee
Q psy2776 594 LSLQVLG 600 (803)
Q Consensus 594 ~~l~V~~ 600 (803)
+.|.|..
T Consensus 93 ~~l~V~~ 99 (100)
T 3knb_A 93 VNIHIRS 99 (100)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9999864
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=130.85 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=60.3
Q ss_pred cCcCeeeecCCcEEEEEEECc-cC---CCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 150 PLKDSVAGFQSSVTLECVVSG-VP---TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g-~p---~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
.|....+..|+.++|.|.+.| .| ...+.|+|++..+.. ....|.|..+...|+|.|+|.+.+..|....
T Consensus 8 ~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~t 80 (304)
T 3shs_A 8 QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATLTVADATSENAGSYKVTVQDTDTMTSV 80 (304)
T ss_dssp EESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-------CSSEEEESSCCGGGCEEEEEEEEETTTCCEE
T ss_pred CCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-------CcceEEeeeccccCCeEEEEEEEECCCCeee
Confidence 456667789999999999874 56 347999999977543 3457999999999999999999998887665
Q ss_pred EEEEEEee
Q psy2776 226 SCTLLVQG 233 (803)
Q Consensus 226 s~~l~V~~ 233 (803)
+..+.|..
T Consensus 81 Ss~VtVT~ 88 (304)
T 3shs_A 81 ESEVFLME 88 (304)
T ss_dssp ECCCEEEC
T ss_pred eeeEEEec
Confidence 55555444
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=137.86 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=85.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCcee---e-eeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceee
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGT---A-ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTN 496 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (803)
+...|+|.+++.+|+|.|.|.+.+..|. . ... ....
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~----------------------------------------~~~~ 116 (223)
T 1dee_B 77 NTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWG----------------------------------------QGTL 116 (223)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEEC----------------------------------------CCEE
T ss_pred CEEEEEECCCCHHHCEEEEEEEeccccCcccceeec----------------------------------------CcEE
Confidence 4578999999999999999999986531 1 110 0234
Q ss_pred eccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEee-CCeeecCCCcEEEEecCC----eEEEEE
Q psy2776 497 LQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMK-NGAEITDSKACRIFIDEE----TSTIAI 568 (803)
Q Consensus 497 l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~-~g~~i~~~~~~~~~~~~~----~~~L~i 568 (803)
|.|.. ++..|.+..... ...+.+|+.+.|.|.+.|. |.+ .+.|++ +|..+............+ .+.|.|
T Consensus 117 L~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i 193 (223)
T 1dee_B 117 VTVSSGSASAPTLFPLVS---CENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLL 193 (223)
T ss_dssp EEECSSCCBCCEEEEEEC---TTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEE
T ss_pred EEEccCCCCCCEEEEecC---CcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEE
Confidence 44442 223333322111 1224679999999999987 766 999999 888775410000000111 356888
Q ss_pred eeecc--CcCeEEEEEEEcCCCCeEEEE
Q psy2776 569 YSVVR--ADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 569 ~~v~~--~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
..... +|.|.|+|.|.|..+......
T Consensus 194 ~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 194 PSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp ECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred cHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 77776 789999999999988765543
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=121.61 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=77.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+.... .+........|.|.++ +.+|+|.|+|.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~ 78 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSA-KRADSGNYKLKVK 78 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTB-CGGGCEEEEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCC-ChhcCEEEEEEEE
Confidence 678877778889999999999999999999999999999 8876553 3344466678999999 7999999999999
Q ss_pred ccCcceeeeEEEEE
Q psy2776 750 NELGSATHGARVTV 763 (803)
Q Consensus 750 N~~G~~~~~~~l~V 763 (803)
|.+|.++..+.|.|
T Consensus 79 N~~G~~~~~~~l~V 92 (93)
T 1wit_A 79 NELGEDEAIFEVIV 92 (93)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred cCCCeEEEEEEEEE
Confidence 99999999888887
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-15 Score=147.61 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=102.7
Q ss_pred EeecceeEEEEEEcCcC----CCeeEEeeCCeeecCCCcEEEEec-CC----eEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFP----RPEISWMKNGAEITDSKACRIFID-EE----TSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p----~~~v~W~~~g~~i~~~~~~~~~~~-~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+..|+.+.|.|.+.|.+ ...|+|+|+|..+........... ++ .+.|.|.....+|.|.|+|.|.|..+..
T Consensus 36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~ 115 (240)
T 4acp_A 36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 115 (240)
T ss_dssp HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence 44699999999999975 247999999998865321110011 11 2578888887888999999999987643
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.... ...
T Consensus 116 ~~~~~i~~~~-------------------------------------------------------------------~~~ 128 (240)
T 4acp_A 116 PIEKTISKAK-------------------------------------------------------------------GQP 128 (240)
T ss_dssp CEEEEECCCC-------------------------------------------------------------------SCC
T ss_pred cccccccccC-------------------------------------------------------------------CCC
Confidence 2222221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEeeCc---eEEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIFDGE---NIILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|+ |.+ .+.|+++|.++..... .....++. ...|.|... ..+|.|.
T Consensus 129 ~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~-~~~~~~~ 207 (240)
T 4acp_A 129 REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKS-RWQQGNV 207 (240)
T ss_dssp BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH-HHHTTCC
T ss_pred CCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChH-HhCCCCE
Confidence 25555544443333348999999999995 554 7999999998753211 11112232 244666654 2357899
Q ss_pred EEEEEEccCc
Q psy2776 744 YKVVATNELG 753 (803)
Q Consensus 744 Y~C~a~N~~G 753 (803)
|+|.|.|..-
T Consensus 208 ytC~V~h~~l 217 (240)
T 4acp_A 208 FSCSVMHEAL 217 (240)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEEECCC
Confidence 9999999764
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=126.48 Aligned_cols=101 Identities=25% Similarity=0.418 Sum_probs=87.5
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+..+... ....+|.|.++ +.+|+|.|+|.|
T Consensus 7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a 85 (110)
T 2dm3_A 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPV-TSRDAGIYTCIA 85 (110)
T ss_dssp CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSC-CGGGCSBBCEEE
T ss_pred CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeC-CcccCEEEEEEE
Confidence 3489999999999999999999999999999999999999999887766554443 44578999999 789999999999
Q ss_pred EccCcceeeeEEEEEEeeccCCC
Q psy2776 749 TNELGSATHGARVTVDVEKVGRP 771 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~~~~~pp 771 (803)
.|..|..+..+.|.|..++..|+
T Consensus 86 ~n~~g~~~~~~~l~V~~~p~~P~ 108 (110)
T 2dm3_A 86 TNRAGQNSFSLELVVAAKESGPS 108 (110)
T ss_dssp ECSSCEEEECCEEEEECCCCSSS
T ss_pred ECCCCEEEEEEEEEEeCCCCCCC
Confidence 99999999999999976655544
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=145.94 Aligned_cols=190 Identities=14% Similarity=0.180 Sum_probs=117.7
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Ceecc-----------------ceeEEEe---cCeeEEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSLIK-----------------GRNITYE---NNVARFTV 201 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~~~-----------------~~~~~~~---~~~~~L~i 201 (803)
.+.+...+..+.+.+|++++|.|.+. .+.+.+.|+|. +.... ..++... .+..+|.|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 34455566778899999999999986 57788999992 21110 0222322 23578999
Q ss_pred ecCCCCcceEEEEEEEcCC--cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 202 VNCSESSEGRYTCKATNEA--GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~--g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
.+++.+|+|.|+|.+.|.. ........|.|.........
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~--------------------------------------- 145 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFP--------------------------------------- 145 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBC---------------------------------------
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccC---------------------------------------
Confidence 9999999999999999842 22223445666542100000
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEEE
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIITS 356 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~~ 356 (803)
+.+....+....+..|+.++|.|.+ + .|.+ .+.|+++|+++..+.....
T Consensus 146 --------------------------P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~-- 197 (268)
T 3pl6_D 146 --------------------------PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDP-- 197 (268)
T ss_dssp --------------------------CEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECS--
T ss_pred --------------------------CceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEecc--
Confidence 0011111222334458999999999 5 4433 8999999998875422100
Q ss_pred cCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCC-c
Q psy2776 357 RGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS-E 435 (803)
Q Consensus 357 ~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~ 435 (803)
........++.|.|.+.. .|+|.....+| .
T Consensus 198 ------~~~~~~~~~~~~~~~~~s-------------------------------------------~l~i~~~~~~d~~ 228 (268)
T 3pl6_D 198 ------QPLKEQPALNDSRYSLSS-------------------------------------------RLRVSATFWQNPR 228 (268)
T ss_dssp ------SCEESSTTCTTCCEEEEE-------------------------------------------EEEEEHHHHSCTT
T ss_pred ------ccccccccCCCCcEEEEE-------------------------------------------EEEEcHHHhccCC
Confidence 011122333445554432 37888888787 9
Q ss_pred eeEEEEeeCCceeee
Q psy2776 436 GRYTCKATNEAGTAE 450 (803)
Q Consensus 436 G~Y~C~a~~~~g~~~ 450 (803)
|.|+|.|.|......
T Consensus 229 g~YtC~v~~~~l~~~ 243 (268)
T 3pl6_D 229 NHFRCQVQFYGLSEN 243 (268)
T ss_dssp CEEEEEEEECCBCTT
T ss_pred CEEEEEEEcCCCCCC
Confidence 999999999765443
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-14 Score=141.87 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=58.9
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--------------Ceeccc-----eeEEEe---cCeeEEEEec
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--------------DSLIKG-----RNITYE---NNVARFTVVN 203 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--------------~~~~~~-----~~~~~~---~~~~~L~i~~ 203 (803)
.+...+..+.+.+|++++|.| ..+.+.+.+.|+|. +..... .++... .+..+|.|.+
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 82 (245)
T 4ei6_B 4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP 82 (245)
T ss_dssp CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence 345556778899999999999 66778889999982 111100 222222 2356899999
Q ss_pred CCCCcceEEEEEEEcCC----cCeeeEEEEEEee
Q psy2776 204 CSESSEGRYTCKATNEA----GTAETSCTLLVQG 233 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~----g~~~~s~~l~V~~ 233 (803)
++.+|+|.|.|.+.+.. ........|.|..
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 116 (245)
T 4ei6_B 83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE 116 (245)
T ss_dssp CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEec
Confidence 99999999999999632 1222334566653
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=125.18 Aligned_cols=95 Identities=21% Similarity=0.374 Sum_probs=87.3
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
...+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+...+...+|.|.++ +.+|+|.|+|.|
T Consensus 11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a 89 (106)
T 1nct_A 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV-QASDEGNYSVVV 89 (106)
T ss_dssp SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCC-CSSCCSEEEECC
T ss_pred CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcC-CchhCEEEEEEE
Confidence 3458899999999999999999999999999999999999999998888888887777889999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|..|..+.++.|.|.
T Consensus 90 ~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 90 ENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp BCSSCBCCEEEEEEEC
T ss_pred EeCCCeEEEEEEEEEE
Confidence 9999999998888873
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=142.04 Aligned_cols=172 Identities=12% Similarity=0.117 Sum_probs=110.6
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---ec------------CCCcEEEEe-cCCeEEEEEeeeccCcCe
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---IT------------DSKACRIFI-DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i~------------~~~~~~~~~-~~~~~~L~i~~v~~~dsG 577 (803)
....+.+|+++.|.|.+. .+.+.+.|+|++ .. +. ...++.+.. ......|.|.+++.+|+|
T Consensus 7 ~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G 85 (238)
T 1bec_A 7 RNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTS 85 (238)
T ss_dssp SEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCE
T ss_pred CeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCE
Confidence 357789999999999995 467899999864 11 10 123444432 234579999999999999
Q ss_pred EEEEEEEcCCCC-----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 578 TYTVTATNAAGS-----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 578 ~Y~C~a~n~~g~-----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
.|.|.+.|..+. ......|.|....
T Consensus 86 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------- 115 (238)
T 1bec_A 86 VYFCASGGGRGSYAEQFFGPGTRLTVLEDL-------------------------------------------------- 115 (238)
T ss_dssp EEEEEEESCTTCGGGCEECCCEEEEEESCG--------------------------------------------------
T ss_pred EEEEEEecCCCCccccccCCCEEEEEeccC--------------------------------------------------
Confidence 999999987421 1122345553310
Q ss_pred ccceeeeeeecccCCCCCCCCeeEe-ccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe----EEEeeC
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIE-RFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK----REIFDG 725 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~----~~~~~~ 725 (803)
....+|.+.. .+....+.+|+.++|.|.+.|. |.+ .+.|+++|.++..+.+. ....++
T Consensus 116 ---------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g 180 (238)
T 1bec_A 116 ---------------RQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNY 180 (238)
T ss_dssp ---------------GGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETT
T ss_pred ---------------CCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCC
Confidence 0011454443 3333456689999999999986 755 89999999998655321 112223
Q ss_pred ce---EEEEEecCCCCC-CceeEEEEEEccCcc
Q psy2776 726 EN---IILELKEADSET-DAGDYKVVATNELGS 754 (803)
Q Consensus 726 ~~---~~L~i~~v~~~~-D~G~Y~C~a~N~~G~ 754 (803)
.. ..|.|... ... +.|.|+|.|.|....
T Consensus 181 ~~~~~s~L~i~~~-~~~d~~~~ytC~v~~~~l~ 212 (238)
T 1bec_A 181 SYCLSSRLRVSAT-FWHNPRNHFRCQVQFHGLS 212 (238)
T ss_dssp EEEEEEEECCCHH-HHTCTTCEEEEEEEECCCC
T ss_pred CEEEEEEEEEcHH-HhccCCCeEEEEEEcCCCC
Confidence 21 23555544 222 467899999997543
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-14 Score=138.61 Aligned_cols=170 Identities=12% Similarity=0.175 Sum_probs=108.2
Q ss_pred CcCeeeecCCcEEEEEEECccCC----CeeEEEEcC--eecc-----------------ceeEEEe----cCeeEEEEec
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPT----PDIKWYKDD--SLIK-----------------GRNITYE----NNVARFTVVN 203 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~----p~i~W~~~~--~~~~-----------------~~~~~~~----~~~~~L~i~~ 203 (803)
+....+.+|++++|.|.+.+.|. +.+.|+|.. ..+. ..++... .+..+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 34567889999999999988764 789999853 2110 1233322 1347899999
Q ss_pred CCCCcceEEEEEEEcCCcC-----e--e--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEe
Q psy2776 204 CSESSEGRYTCKATNEAGT-----A--E--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVK 274 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~-----~--~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (803)
++.+|+|.|.|.+.|..|. . . ..+.|.|...+. .
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~--~----------------------------------- 129 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKT--T----------------------------------- 129 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCC--B-----------------------------------
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCC--C-----------------------------------
Confidence 9999999999999987651 1 1 225566653210 0
Q ss_pred eccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccce
Q psy2776 275 SVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESAR 351 (803)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~ 351 (803)
.+.+....+.. .+.+|+.+.|.|.+ + .|.+ .+.|++++..+.....
T Consensus 130 ------------------------------~P~i~~~~~~~-~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~ 178 (228)
T 3bae_H 130 ------------------------------APSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF 178 (228)
T ss_dssp ------------------------------CCEEEEECC------CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEE
T ss_pred ------------------------------CCEEEEecccc-cccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEc
Confidence 00011111111 13469999999999 5 4776 9999999876532111
Q ss_pred eEEEEcCc---eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 352 HIITSRGT---QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 352 ~~~~~~~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
..+...+. ...|.|.....+| |.|+|.+.|..+...+
T Consensus 179 ~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~ 218 (228)
T 3bae_H 179 PAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV 218 (228)
T ss_dssp EEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred CceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence 11222232 3458888888866 9999999998876553
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=142.32 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred ceEEeecceeEEEEEEcCcCC--CeeEEeeC--Ceeec-------------------CCCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR--PEISWMKN--GAEIT-------------------DSKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~--g~~i~-------------------~~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|++++|.|.+.+.++ +.+.|+|+ +..+. ...++.+..+ .....|.|.++
T Consensus 160 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 239 (268)
T 1x9q_A 160 GGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNL 239 (268)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred ceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 467889999999999998764 78999985 22210 1234554432 23578999999
Q ss_pred ccCcCeEEEEEEEcC
Q psy2776 572 VRADTSTYTVTATNA 586 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~ 586 (803)
..+|+|.|.|.|.|.
T Consensus 240 ~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 240 RVEDTGIYYCTGASY 254 (268)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred CHHHCEEEEEEEccC
Confidence 999999999999874
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-14 Score=123.37 Aligned_cols=93 Identities=18% Similarity=0.303 Sum_probs=80.5
Q ss_pred CCCCeeEe---ccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 670 GQAPLFIE---RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 670 ~~~p~~~~---~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
..+|.|.. ......+.+|+.+.|.|.+.|.|.|.+.|+++|..+. ..++.+...+....|.|.++ +.+|+|.|+|
T Consensus 19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C 96 (118)
T 2e7c_A 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQA-ARSDSGEYEL 96 (118)
T ss_dssp SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSC-CTTTCEEEEE
T ss_pred ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCC-ChhcCEEEEE
Confidence 34677754 2456789999999999999999999999999999986 56677777777788999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+|..+..+.|.|.
T Consensus 97 ~a~N~~G~~~~~~~l~V~ 114 (118)
T 2e7c_A 97 SVQIENMKDTATIRIRVV 114 (118)
T ss_dssp EEECSSCEECCEEEEEEE
T ss_pred EEEeCCCeEEEEEEEEEE
Confidence 999999999999988885
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=136.94 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=83.7
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCce--eeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAG--TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
+...|+|.+++.+|+|.|.|.+.+..+ ...... .....|.
T Consensus 76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~--------------------------------------~~~~~L~ 117 (232)
T 1dn0_B 76 NQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYW--------------------------------------GQGTLVT 117 (232)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEE--------------------------------------CCCEEEE
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCcCCchhhhc--------------------------------------ccceEEE
Confidence 456899999999999999999984221 100000 0023444
Q ss_pred cCC-CCCCccceeeeccccceEEeec-ceeEEEEEEcCc-CCC-eeEEee-CCeeecCCCcE-EEEecC---CeEEEEEe
Q psy2776 499 IQS-PPQQPAIKLVDSNLKSQRLSVK-SQWKVEVKYFGF-PRP-EISWMK-NGAEITDSKAC-RIFIDE---ETSTIAIY 569 (803)
Q Consensus 499 v~~-~p~~~~~~~~~~~~~~~~v~~g-~~v~l~C~~~g~-p~~-~v~W~~-~g~~i~~~~~~-~~~~~~---~~~~L~i~ 569 (803)
|.. ++..|.+..... ...+..| +.+.|.|.+.+. |.+ .+.|++ +|..+...... .....+ ..+.|.|.
T Consensus 118 V~~~~~~~P~v~~~~p---~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~ 194 (232)
T 1dn0_B 118 VSSGSASAPTLFPLVS---CENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLP 194 (232)
T ss_dssp ECSSCCBCCEEEEEEC---C------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEEC
T ss_pred EccCCCCCCceEEecc---ccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEc
Confidence 444 233333322111 1224578 999999999986 776 999999 99877541000 000110 13578888
Q ss_pred eecc--CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 570 SVVR--ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 570 ~v~~--~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+... +|.|.|+|.|.|..+.......+.|..
T Consensus 195 ~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 195 SKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA 227 (232)
T ss_dssp TTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred HHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence 8876 889999999999999877766665543
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-14 Score=140.20 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=109.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCee--EEeeCC--e---ee-----cC-----------CCcEEEEec--CCeEEEEEe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEI--SWMKNG--A---EI-----TD-----------SKACRIFID--EETSTIAIY 569 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v--~W~~~g--~---~i-----~~-----------~~~~~~~~~--~~~~~L~i~ 569 (803)
...+.+|++++|.|.+.+.+ ...+ .|+|.. . .+ .. ..++.+..+ .+...|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 88 (232)
T 3qhz_H 9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT 88 (232)
T ss_dssp CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence 35688999999999998643 2445 999742 1 11 00 135554432 345789999
Q ss_pred eeccCcCeEEEEEEEcCCC--------CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEE
Q psy2776 570 SVVRADTSTYTVTATNAAG--------STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQV 641 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g--------~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (803)
+++.+|+|.|.|.+.+..+ .......|.|..
T Consensus 89 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~----------------------------------------- 127 (232)
T 3qhz_H 89 NMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS----------------------------------------- 127 (232)
T ss_dssp SCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS-----------------------------------------
T ss_pred cCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec-----------------------------------------
Confidence 9999999999999997631 112223344421
Q ss_pred EEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCe
Q psy2776 642 FAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKK 719 (803)
Q Consensus 642 ~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~ 719 (803)
....+|.+........+..|+.++|.|.+.|.+++ .+.|+++|..+......
T Consensus 128 --------------------------~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~ 181 (232)
T 3qhz_H 128 --------------------------ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP 181 (232)
T ss_dssp --------------------------SCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC
T ss_pred --------------------------CCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeecc
Confidence 11225656544444456679999999999986543 57799998744211110
Q ss_pred EEEe-eCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 720 REIF-DGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 720 ~~~~-~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.... ++. .+.|.|... ...| |.|+|.|.|..+.......|.+
T Consensus 182 ~~~~~~g~~~~~s~L~i~~~-~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 182 AVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CEECTTSCEEEEEEEEEEGG-GGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred ceeCCCCCEEEEEEEEEchh-hcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 0111 121 246889888 5678 9999999999988776665543
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-14 Score=140.46 Aligned_cols=178 Identities=14% Similarity=0.139 Sum_probs=113.5
Q ss_pred ceEEeecceeEEEEEEcCcCC----CeeEEeeCC--e---ee---c----------------CCCcEEEEec--CCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR----PEISWMKNG--A---EI---T----------------DSKACRIFID--EETSTI 566 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~----~~v~W~~~g--~---~i---~----------------~~~~~~~~~~--~~~~~L 566 (803)
...+.+|++++|.|.+.+.+. ..+.|+|.. . .+ . ...++.+..+ .....|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 88 (239)
T 3tv3_H 9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL 88 (239)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence 467889999999999987663 489999842 1 11 1 0134444332 345789
Q ss_pred EEeeeccCcCeEEEEEEEcCCCC-------------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEccccc
Q psy2776 567 AIYSVVRADTSTYTVTATNAAGS-------------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633 (803)
Q Consensus 567 ~i~~v~~~dsG~Y~C~a~n~~g~-------------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 633 (803)
.|.+++.+|+|.|.|.+.+..+. ......|.|..
T Consensus 89 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~--------------------------------- 135 (239)
T 3tv3_H 89 KLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS--------------------------------- 135 (239)
T ss_dssp EECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC---------------------------------
T ss_pred EECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc---------------------------------
Confidence 99999999999999999875321 01112233321
Q ss_pred CceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCe
Q psy2776 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNK 711 (803)
Q Consensus 634 ~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~ 711 (803)
....+|.+........+..|+.++|.|.+.|. |.+ .+.|+++|.
T Consensus 136 ----------------------------------~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~ 181 (239)
T 3tv3_H 136 ----------------------------------ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL 181 (239)
T ss_dssp ----------------------------------CCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ----------------------------------CCCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCc
Confidence 11225666544444455679999999999985 544 488999987
Q ss_pred eccCCCCeEEEe-eCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 712 PLLSSPKKREIF-DGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 712 ~l~~~~~~~~~~-~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.+.......... ++. .+.|.|... ..+| |.|+|.|.|..+.......|.+
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 182 TSGVHTFPAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp CTTEEECCCEECTTSCEEEEEEEEEEGG-GTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred cCceEecCceECCCCCEEEEEEEEEchh-hcCC-CEEEEEEEECCCCceEEEEecc
Confidence 542111101111 121 246889888 5678 9999999999988776665554
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=121.41 Aligned_cols=92 Identities=29% Similarity=0.414 Sum_probs=80.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEE-eeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+....+..+. .......|.|.++ +.+|+|.|+|.|.|
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n 83 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVV-RASDAGAYACVAKN 83 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSC-CGGGCEEEEEEEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCC-CcccCEEEEEEEEc
Confidence 677887888889999999999999999999999999999999877654333 3455578999999 78999999999999
Q ss_pred cCcceeeeEEEEEE
Q psy2776 751 ELGSATHGARVTVD 764 (803)
Q Consensus 751 ~~G~~~~~~~l~V~ 764 (803)
..|..+.++.|.|.
T Consensus 84 ~~g~~~~~~~l~V~ 97 (100)
T 2kdg_A 84 RAGEATFTVQLDVL 97 (100)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEEE
Confidence 99999999999885
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.7e-14 Score=140.20 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=115.7
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--------------eecc----ceeEEEe---cCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--------------SLIK----GRNITYE---NNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--------------~~~~----~~~~~~~---~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|+++.|.|.+.+ +.+.+.|+|.. .... ..++... ....+|.|.+++
T Consensus 5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~ 83 (240)
T 3q5y_A 5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE 83 (240)
T ss_dssp CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence 444566788999999999999976 77899999822 1110 0122222 245689999999
Q ss_pred CCcceEEEEEEEcCCc---CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 206 ESSEGRYTCKATNEAG---TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g---~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
.+|+|.|+|.+.+..+ .......|.|........
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~------------------------------------------- 120 (240)
T 3q5y_A 84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVT------------------------------------------- 120 (240)
T ss_dssp GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCB-------------------------------------------
T ss_pred hhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCC-------------------------------------------
Confidence 9999999999984322 122234566653210000
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeecccccee----EEE
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARH----IIT 355 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~----~~~ 355 (803)
.+.+....+....+..|+.+.|.|.+ + .|.+ .+.|+++|.++...... ...
T Consensus 121 ----------------------~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~ 178 (240)
T 3q5y_A 121 ----------------------PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKE 178 (240)
T ss_dssp ----------------------CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEE
T ss_pred ----------------------CCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeC
Confidence 00111111222234458899999999 5 5655 89999999998764332 233
Q ss_pred EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeeee
Q psy2776 356 SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 356 ~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~~ 392 (803)
.++.. ..|.|.....+| .|.|+|.+.|........|.
T Consensus 179 ~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~~~~~ 219 (240)
T 3q5y_A 179 SNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 219 (240)
T ss_dssp ETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTSCCC
T ss_pred CCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCccccC
Confidence 34443 348899998888 67999999998766555663
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-13 Score=151.14 Aligned_cols=91 Identities=30% Similarity=0.473 Sum_probs=78.8
Q ss_pred EEEecCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeee-eeEEEEeccccCCeEEEEE
Q psy2776 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT-STTYEVTKLTTKHEYMFRV 116 (803)
Q Consensus 38 l~V~~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~c 116 (803)
|..+.+|+||..|.+.....++++|+|.+|..+|+++|++|.+|.++.+.. .|.++... ...+++.+|.++..|.||+
T Consensus 4 v~~~~~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~-~W~~v~~~~~t~~~V~~L~~g~~Y~FRV 82 (573)
T 3uto_A 4 VADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGG-SWSPCAKSRYTYTTIEGLRAGKQYEFRI 82 (573)
T ss_dssp ----CCCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSC-CCEEEEEESSSEEEECCCCTTCEEEEEE
T ss_pred cccCCCCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCC-ceEEeccccCCEEEeCCCCCCCcEeEEE
Confidence 445567889999999999999999999999999999999999999988776 89988764 6789999999999999999
Q ss_pred EEEccCccCCCcc
Q psy2776 117 AAVNAIGTGPASH 129 (803)
Q Consensus 117 ~a~~~~g~~~~s~ 129 (803)
.|.|.+|.+.++.
T Consensus 83 ~A~N~~G~s~PS~ 95 (573)
T 3uto_A 83 IAENKHGQSKPCE 95 (573)
T ss_dssp EEEETTEECCCCC
T ss_pred EEEcCceEcCCcC
Confidence 9999999876654
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=116.68 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=71.9
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
+.++.+.+|+++.|.|.+.| |.|.+.|+|||.+|..+.++.+..++....|.|.++ +.+|+|.|+|.|.| ++.+
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~n----~~~~ 76 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGA-RSGDAGEYLCDAPQ----DSRI 76 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSC-SSTTCEEEEEECTT----TCEE
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCC-CCcccEEEEEEECC----EEEE
Confidence 34678999999999999976 999999999999999999999999999899999999 79999999999866 5667
Q ss_pred EEEEEEe
Q psy2776 759 ARVTVDV 765 (803)
Q Consensus 759 ~~l~V~~ 765 (803)
+.|.|+.
T Consensus 77 a~l~V~e 83 (84)
T 2lu7_A 77 FLVSVEE 83 (84)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 7788853
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=161.28 Aligned_cols=175 Identities=11% Similarity=0.159 Sum_probs=122.3
Q ss_pred cCeeeecCCcEEEEEEE-CccCCCeeEEEEcCeecc-------------ceeEEEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIK-------------GRNITYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~~~~-------------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
+...+.+|++++|.|.+ .+.|.+.+.|+|++..+. ..+..... ..+|.|.+++.+|+|.|+|.+.
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLP-NGSLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECT-TSCEEESSCCGGGCEEEEEEEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcC-CceEEEeccccccCeEEEEEEE
Confidence 34677899999999999 788999999999875221 11222222 2479999999999999999999
Q ss_pred cCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 218 NEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 218 n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
|..+.. ...+.|.|...+..+.
T Consensus 453 n~~~~~~~~~~~l~V~~~~~~p~--------------------------------------------------------- 475 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPGKPE--------------------------------------------------------- 475 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCCCCE---------------------------------------------------------
T ss_pred cCCCceeEEEEEEEEEcCCCCCE---------------------------------------------------------
Confidence 999887 6678888876532110
Q ss_pred eeccCCCccccccccCCceeeeccccc-eeEEEEe-c-CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCC-CC
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGD-ATFQVEL-S-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ-DD 372 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~-~-~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~-~d 372 (803)
+. .+... +.+++. +.|.|.+ + .|.+.+.|++||+++...... .+....... .+
T Consensus 476 -----------i~--~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~---------~~~~~~~~~~~~ 532 (581)
T 3o3u_N 476 -----------IV--DSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKG---------VSVKEQTRRHPE 532 (581)
T ss_dssp -----------EE--SCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTT---------EEEEEEEEECTT
T ss_pred -----------EE--cCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCe---------EEEEeeeEEcCC
Confidence 00 00111 223444 4679999 5 699999999999998753221 111222222 38
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEecc-CCCceeEEEEeeCCceeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCS-ESSEGRYTCKATNEAGTAE 450 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~~~~g~~~ 450 (803)
+|.|+|... |+|.+++ .++.|.|+|.|.|..+...
T Consensus 533 ~g~y~~~s~-------------------------------------------L~i~~~~~~d~~~~y~C~~~n~~~~~~ 568 (581)
T 3o3u_N 533 TGLFTLQSE-------------------------------------------LMVTPARGGDPRPTFSCSFSPGLPRHR 568 (581)
T ss_dssp TCCEEEEEE-------------------------------------------EEECCCTTSCSCCCEEEEEECSSCSSC
T ss_pred CceEEEEEE-------------------------------------------EEEEeccccCCCceEEEEEeccCCCCC
Confidence 899998865 8899888 5668999999999875443
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=143.01 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=112.0
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcCe--ecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDDS--LIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~~--~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+....+.+|++++|.|.+.+.| .+.+.|+|+.. .+. ..++... .+..+|.|.++
T Consensus 29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 108 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL 108 (291)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence 4567889999999999998766 57899999531 110 1122221 23578999999
Q ss_pred CCCcceEEEEEEEcCC-cCee----eEEEEEEeee-ecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccc
Q psy2776 205 SESSEGRYTCKATNEA-GTAE----TSCTLLVQGK-EIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 278 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~-g~~~----~s~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (803)
+.+|+|.|.|.+.|.. |... ....|.|... .... +. ..
T Consensus 109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~---------~~-~~-------------------------- 152 (291)
T 2gki_A 109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGS---------GG-GG-------------------------- 152 (291)
T ss_dssp CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------------------------------------
T ss_pred CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCcccc---------cc-cc--------------------------
Confidence 9999999999999875 2111 1234555431 0000 00 00
Q ss_pred cceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCce------eeEEeec--Ceecc--
Q psy2776 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI------QVKWLKK--GKEIK-- 347 (803)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~------~i~W~~~--g~~l~-- 347 (803)
.........+...+....+.+|++++|.|.+ +.|.+ .+.|+|+ |..+.
T Consensus 153 ---------------------~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l 211 (291)
T 2gki_A 153 ---------------------SGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLL 211 (291)
T ss_dssp ---------------------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEE
T ss_pred ---------------------CCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEE
Confidence 0000001122233445567789999999999 66665 9999996 33211
Q ss_pred ----------ccceeEEEEcCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 ----------ESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 ----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+...+....|.|.++..+|+|.|.|.+.|.
T Consensus 212 ~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 257 (291)
T 2gki_A 212 IYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYY 257 (291)
T ss_dssp EETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 023455545556678999999999999999999985
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=135.28 Aligned_cols=127 Identities=12% Similarity=0.198 Sum_probs=80.7
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|.|.+.+........ ....|.|
T Consensus 78 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~----------------------------------------~~~~l~V 117 (221)
T 3m8o_H 78 KNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWG----------------------------------------QGTLVTV 117 (221)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEESCTTCCCBB----------------------------------------CCEEEEE
T ss_pred CCEEEEEECCCCHHHCEEEEEEEECCChhheEC----------------------------------------CCEEEEE
Confidence 456789999999999999999998863101110 0223333
Q ss_pred C-CCCCCccceeeeccccceEEeecceeEEEEEEcC-cCC--CeeEEeeCCeeecCCCcEEEE-ecCC----eEEEEEee
Q psy2776 500 Q-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPR--PEISWMKNGAEITDSKACRIF-IDEE----TSTIAIYS 570 (803)
Q Consensus 500 ~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~--~~v~W~~~g~~i~~~~~~~~~-~~~~----~~~L~i~~ 570 (803)
. .++..|.+...... .. .+|+.+.|.|.+.+ .|. +.+.|+++|..+......... ..++ .+.|.|..
T Consensus 118 ~~~~~~~p~v~~~~~~---~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~ 193 (221)
T 3m8o_H 118 SSASPTSPKVFPLSLC---ST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPA 193 (221)
T ss_dssp CSCCCBCCEEEEEECC---SC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEG
T ss_pred ecCCCCCCeEEEecCc---cc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECH
Confidence 3 22222322211111 11 67999999999998 675 489999999876321100000 0111 24699999
Q ss_pred eccCcCeEEEEEEEcCCCCe
Q psy2776 571 VVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+..+|+|.|+|.|.|..+..
T Consensus 194 ~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 194 TQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp GGSCTTCEEEEEEEETTSCC
T ss_pred HHcCCCCeEEEEEEECCCCc
Confidence 99999999999999987653
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=138.13 Aligned_cols=169 Identities=12% Similarity=0.143 Sum_probs=108.8
Q ss_pred cCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eec------------------cceeEEEe----cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLI------------------KGRNITYE----NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~----~~~~~L~i~~v~ 205 (803)
....+.+|++++|.|.+.+.| .+.+.|+|.. ..+ ...++... .+..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (225)
T 1op3_H 8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR 87 (225)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence 456788999999999998765 6789999853 111 01223322 235789999999
Q ss_pred CCcceEEEEEEEcCCc-----Ce-e--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecc
Q psy2776 206 ESSEGRYTCKATNEAG-----TA-E--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVS 277 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g-----~~-~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (803)
.+|+|.|.|.+.|..| .. . ....|.|...+. .
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~--~-------------------------------------- 127 (225)
T 1op3_H 88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST--K-------------------------------------- 127 (225)
T ss_dssp GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC--B--------------------------------------
T ss_pred hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC--c--------------------------------------
Confidence 9999999999999865 11 1 234566654210 0
Q ss_pred ccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeecccc-ceeE
Q psy2776 278 KLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKES-ARHI 353 (803)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~-~~~~ 353 (803)
. +.+....+.. .+.+|+.+.|.|.+ + .|.+ .+.|++++..+... ....
T Consensus 128 -------------------------~--P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~ 179 (225)
T 1op3_H 128 -------------------------G--PSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV 179 (225)
T ss_dssp -------------------------C--CEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCE
T ss_pred -------------------------C--CeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCce
Confidence 0 0000000111 12459999999999 5 4766 99999998764311 1111
Q ss_pred EEEcCc---eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 354 ITSRGT---QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 354 ~~~~~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
+..++. ...|.|.....+| |.|+|.|.|......+
T Consensus 180 ~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~ 217 (225)
T 1op3_H 180 LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV 217 (225)
T ss_dssp ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEE
T ss_pred eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccE
Confidence 122332 2458999998888 9999999997765443
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=116.99 Aligned_cols=89 Identities=19% Similarity=0.358 Sum_probs=80.2
Q ss_pred eEeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
+...+....+.+|+++.|.|.+.|. |.|.+.|++++..+..+.++.+...+....|.|.++ +.+|+|.|+|.|.|..|
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~g 82 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDI-TKLDDGTYRCKVVNDYG 82 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSC-CGGGCEEEEEEEECSSC
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecC-ChhhCeEEEEEEECCCC
Confidence 3445567889999999999999997 999999999999999888988877788889999999 79999999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
.....+.|.|.
T Consensus 83 ~~~~~~~l~V~ 93 (97)
T 2bk8_A 83 EDSSYAELFVK 93 (97)
T ss_dssp EEEEEEEEEET
T ss_pred eEeEEEEEEEE
Confidence 99999988884
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=137.49 Aligned_cols=74 Identities=22% Similarity=0.513 Sum_probs=54.7
Q ss_pred eeccCcCeeeecCCcEEEEEEECcc--CCCeeEEEEcC--eec------------------cceeEEEe--c--CeeEEE
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGV--PTPDIKWYKDD--SLI------------------KGRNITYE--N--NVARFT 200 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~~--~~~------------------~~~~~~~~--~--~~~~L~ 200 (803)
+...+..+.+.+|++++|.|.+.+. +.+.+.|+|.. ..+ ...++... . +..+|.
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence 4445667888999999999999875 56789999853 111 11233322 1 357899
Q ss_pred EecCCCCcceEEEEEEEcCC
Q psy2776 201 VVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~ 220 (803)
|.+++.+|+|.|.|.+.+..
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~ 103 (242)
T 1hxm_B 84 IHNVEKQDIATYYCALWEAQ 103 (242)
T ss_dssp ECSCCGGGCEEEEEEEEEEC
T ss_pred ECCCCcccCEEEEEeeecCC
Confidence 99999999999999999863
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=126.21 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=80.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec---CCCceEEeeCCee-cc--CCCCeEEEee--C----ceEEEEEecCCCCC
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKP-LL--SSPKKREIFD--G----ENIILELKEADSET 739 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~---p~~~v~W~~~~~~-l~--~~~~~~~~~~--~----~~~~L~i~~v~~~~ 739 (803)
-|.|+..+..+.+.+|++++|.|.+.|. |.|.|.|+|+... +. ...++.+... . ..+.|.|.++ +.+
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~ 85 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKA-KDN 85 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSC-CTT
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccC-Ccc
Confidence 3668888889999999999999999875 8999999997421 11 2345544321 1 2578999999 799
Q ss_pred CceeEEEEEEccCcceeeeEEEEEEeeccCCCCCc
Q psy2776 740 DAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~ 774 (803)
|+|.|+|+|.|..|.+++.+.|+|.+.+...|.+.
T Consensus 86 DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~~ 120 (126)
T 2dav_A 86 FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120 (126)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEECCCCSCCCCC
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCeEE
Confidence 99999999999999999999999987444555544
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=140.61 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=59.4
Q ss_pred eEEeecceeEEEEEEcC-cC-CCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFG-FP-RPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g-~p-~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
..+.+|++++|.|.+.+ .+ .+.+.|+|. +..+. ...++.+........|.|.+++.+|+|.|.|
T Consensus 149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C 228 (280)
T 3fku_X 149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYC 228 (280)
T ss_dssp EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEE
Confidence 67889999999999988 44 378999873 22221 1245666555566789999999999999999
Q ss_pred EEEcCCCC---eEEEEEEEEeee
Q psy2776 582 TATNAAGS---TSLDLSLQVLGY 601 (803)
Q Consensus 582 ~a~n~~g~---~s~s~~l~V~~~ 601 (803)
.+.|..+. ......|.|...
T Consensus 229 ~~~~~~~~~~~~g~~t~l~V~~~ 251 (280)
T 3fku_X 229 STWDSSLSAVVFGGGTKLTVLGQ 251 (280)
T ss_dssp EEEETTTTEEEEBCCCEEEEC--
T ss_pred EEecCCCCceEECCCEEEEECCC
Confidence 99987632 223345666543
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=119.19 Aligned_cols=92 Identities=24% Similarity=0.412 Sum_probs=79.1
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
...+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. +.++.+.. .. .|.|.++ +.+|+|.|+|.
T Consensus 5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~-~~--~L~i~~v-~~~d~G~Y~C~ 80 (100)
T 2edj_A 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE-QG--TLQIKNL-RISDTGTYTCV 80 (100)
T ss_dssp CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECT-TC--CEEEESC-CTTTCCEEEEE
T ss_pred CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcC-CC--EEEEccC-CcccCEEEEEE
Confidence 34589999988899999999999999999999999999999998874 34443332 22 6999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|.|..|..+..+.|.|.
T Consensus 81 a~n~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 81 ATSSSGETSWSAVLDVT 97 (100)
T ss_dssp EECSSCCCBCCEEEEEE
T ss_pred EEcCCCCEEEEEEEEEe
Confidence 99999999999999985
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=134.98 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=108.7
Q ss_pred cCeeeecCCcEEEEEEECccC--CCeeEEEEcC--ee---c---------------cceeEEEe----cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SL---I---------------KGRNITYE----NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~---~---------------~~~~~~~~----~~~~~L~i~~v~ 205 (803)
....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ...++... .+..+|+|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence 457788999999999998755 5689999853 11 1 01233332 235689999999
Q ss_pred CCcceEEEEEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 206 ESSEGRYTCKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
.+|+|.|.|.+.+..+.. .....|.|...+..
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~--------------------------------------------- 122 (220)
T 2fbj_H 88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESAR--------------------------------------------- 122 (220)
T ss_dssp GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCB---------------------------------------------
T ss_pred hhhCEEEEEEEeccccccceecCCEEEEecCCCCC---------------------------------------------
Confidence 999999999999875521 12345666543100
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCc--eeeEEeecCeeccc-cceeEEEEc
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPD--IQVKWLKKGKEIKE-SARHIITSR 357 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~--~~i~W~~~g~~l~~-~~~~~~~~~ 357 (803)
.| .+... + ...+..|+.++|.|.+ + .|. +.+.|++++..+.. ........+
T Consensus 123 --------------------~P--~v~~~-~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~ 178 (220)
T 2fbj_H 123 --------------------NP--TIYPL-T-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG 178 (220)
T ss_dssp --------------------CC--EEEEE-C-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSS
T ss_pred --------------------CC--EEEEe-e-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCC
Confidence 00 00000 1 1123469999999999 5 376 89999999887621 111112223
Q ss_pred Cce---eEEEEeecCCCCCccEEEEEeccccc
Q psy2776 358 GTQ---RKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 358 ~~~---~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
+.. +.|.|.....+|.|.|+|.+.|..+.
T Consensus 179 g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~ 210 (220)
T 2fbj_H 179 GRYTMSNQLTLPAVECPEGESVKCSVQHDSNP 210 (220)
T ss_dssp SCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence 332 35889889889999999999998765
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=125.56 Aligned_cols=158 Identities=15% Similarity=0.237 Sum_probs=106.1
Q ss_pred eeeeccccceeEEEEe--cCC---ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 315 VTLVPHLGDATFQVEL--SSP---DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~--~~p---~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
-..+..|+.++|.|.+ +.| ..+|.|+|||.++....
T Consensus 11 ~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT--------------------------------------- 51 (304)
T 3shs_A 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------------------------------------- 51 (304)
T ss_dssp CSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS---------------------------------------
T ss_pred CccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc---------------------------------------
Confidence 3445569999999998 567 67999999998865421
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
..|+|..+...|+|.|+|.+.+..|....+.. +.|....
T Consensus 52 ---------------------------------~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~-------VtVT~~a- 90 (304)
T 3shs_A 52 ---------------------------------ATLTVADATSENAGSYKVTVQDTDTMTSVESE-------VFLMEEA- 90 (304)
T ss_dssp ---------------------------------SEEEESSCCGGGCEEEEEEEEETTTCCEEECC-------CEEECBC-
T ss_pred ---------------------------------ceEEeeeccccCCeEEEEEEEECCCCeeeeee-------EEEeccC-
Confidence 13667777888999999999988776554321 1111100
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE--cC-cC-----CCeeE
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY--FG-FP-----RPEIS 541 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~--~g-~p-----~~~v~ 541 (803)
.+.+.+..| ....+..|..+.|.+.+ .| .| ..+++
T Consensus 91 ------------------------~l~i~it~P-------------~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQ 133 (304)
T 3shs_A 91 ------------------------ELIVNITEP-------------QHFYVSSQTDVELHATVKFSGGKTPADNYELHYS 133 (304)
T ss_dssp ------------------------CEEEEESSC-------------SEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEE
T ss_pred ------------------------ceeEEecCC-------------CceeccCCCeEEEEEEEeccCCCCcccCCCceeE
Confidence 111222221 23344557788998887 53 44 46899
Q ss_pred EeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC--eEEEEEEEEee
Q psy2776 542 WMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLSLQVLG 600 (803)
Q Consensus 542 W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~--~s~s~~l~V~~ 600 (803)
|+|++..+... ..|.+......++|.|+|.++|..+. .+.++.+.+..
T Consensus 134 WyKngt~IsgA-----------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~ 183 (304)
T 3shs_A 134 WSKGEDVIDTT-----------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT 183 (304)
T ss_dssp EEETTEEEESS-----------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE
T ss_pred EeeCCeEccCc-----------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc
Confidence 99999877542 35677778889999999999998764 45555555544
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=141.14 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=46.0
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
.|..+.|.|.+.|. |+ +.+.|+|+|..+............++ +.|.|.....+|.|.|+|.|.|....
T Consensus 123 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 123 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred cCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 35669999999996 44 48999999998864322112212221 34555555557799999999998654
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=116.49 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCeeEeccceeE--EecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKT--VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~--v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
||.|+.++.... +.+|+.+.|.|.+.+ |.+.+.|+|||.+|..+.++.+..++...+|.|.++ +.+|+|.|+|.|.
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 81 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPAT-QPSDGGEFQCVAG 81 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSC-CGGGCSEEEEECS
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCC-ChhhcEEEEEEEc
Confidence 677776666544 468999999999966 889999999999999999999999999999999999 7999999999997
Q ss_pred ccCcceeeeEEEEE
Q psy2776 750 NELGSATHGARVTV 763 (803)
Q Consensus 750 N~~G~~~~~~~l~V 763 (803)
|. +.++.|+|
T Consensus 82 n~----~~~~~ltV 91 (91)
T 2lvc_A 82 DE----CAYFTVTI 91 (91)
T ss_dssp SC----EEEEEEEC
T ss_pred ce----EEEEEEEC
Confidence 74 55555554
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=117.05 Aligned_cols=90 Identities=23% Similarity=0.491 Sum_probs=78.7
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC--CeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|+.|...+....+.+|+++.|.|.+.| |.+.+.|+|+|..+..+. ++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~ 84 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA-TKADAAEYSVMTT 84 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEE-CTTTCSEEEEEET
T ss_pred CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCC-CcccCEEEEEEEC
Confidence 455788888899999999999999987 779999999999998887 678888888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEeec
Q psy2776 750 NELGSATHGARVTVDVEK 767 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~~~ 767 (803)
| .+.++.|.|..++
T Consensus 85 n----~~~~~~l~V~~~p 98 (103)
T 1x44_A 85 G----GQSSAKLSVDLKS 98 (103)
T ss_dssp T----EEEEEEEEEECCC
T ss_pred C----CcEEEEEEEeCCC
Confidence 8 5777888886544
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=139.19 Aligned_cols=76 Identities=16% Similarity=0.304 Sum_probs=58.0
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec------------------cceeEEEe---cCeeEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI------------------KGRNITYE---NNVARFT 200 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~------------------~~~~~~~~---~~~~~L~ 200 (803)
.+.+...+..+.+.+|++++|.|.+.+.+.+.+.|+|++. .. ...++... .+..+|.
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 3455666777889999999999999888888999999641 10 01233332 2456899
Q ss_pred EecCCCCcceEEEEEEEcC
Q psy2776 201 VVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~ 219 (803)
|.+++.+|+|.|+|.+.|.
T Consensus 104 I~~v~~~D~G~Y~C~~~~~ 122 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDL 122 (279)
T ss_dssp ESSCCGGGCEEEEEEEEET
T ss_pred EccCCccCCEEEEEEEccc
Confidence 9999999999999999994
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=117.94 Aligned_cols=90 Identities=29% Similarity=0.474 Sum_probs=79.0
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..... ........|.|.++ +.+|+|.|+|.|.|
T Consensus 10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N 85 (99)
T 2yr3_A 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDA-LPEDHGTYTCLAEN 85 (99)
T ss_dssp EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSC-CTTCCBCEEEEEEC
T ss_pred cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCC-ChhhCEEEEEEEEE
Confidence 488898888889999999999999999999999999999998876543 23355678999999 79999999999999
Q ss_pred cCcceeeeEEEEEE
Q psy2776 751 ELGSATHGARVTVD 764 (803)
Q Consensus 751 ~~G~~~~~~~l~V~ 764 (803)
.+|..+.++.|.|+
T Consensus 86 ~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 86 ALGQVSCSAWVTVH 99 (99)
T ss_dssp SSCEEEEECCEEEC
T ss_pred CCCeEEEEEEEEEC
Confidence 99999998888873
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=134.34 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=78.8
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++.+|+|.|.|.+.+..+...... ....|.|.
T Consensus 76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---------------------------------------~~~~L~V~ 116 (215)
T 1c5d_H 76 SQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWG---------------------------------------PGTMVTVS 116 (215)
T ss_dssp TEEEEEESSCCGGGCEEEEEEECCSSSCSCCBC---------------------------------------CCEEEEEC
T ss_pred ceEEEEECCCCcccCEEEEEEEecCCcccceEc---------------------------------------CCEEEEec
Confidence 456899999999999999999998653211100 02233443
Q ss_pred -CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCCeEEE--EEeeeccCc
Q psy2776 501 -SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEETSTI--AIYSVVRAD 575 (803)
Q Consensus 501 -~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L--~i~~v~~~d 575 (803)
.+|..|.+..... ...+.+|+.+.|.|.+.|. |.| .+.|+++|..+......... ..+...+ .|.....+|
T Consensus 117 ~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~~~s~L~~~~~~~ 192 (215)
T 1c5d_H 117 SAQTTAPSVYPLAP---GCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVL-QSGLYTLTSSVTSSTWPS 192 (215)
T ss_dssp SSCCBCCCEEEECC---CSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEE-ETTEEEEEEEEEESSTTT
T ss_pred CCCCCCCeEEeccC---ChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCccc-CCCCEEEEEEEecccCCC
Confidence 2233333322111 1224679999999999987 777 99999998754321111111 1122221 233333356
Q ss_pred CeEEEEEEEcCCCCeEEEEE
Q psy2776 576 TSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~ 595 (803)
|.|+|.|.|..|.......
T Consensus 193 -g~ytC~v~n~~~~~~~~~~ 211 (215)
T 1c5d_H 193 -QTVTCNVAHPASSTKVDKK 211 (215)
T ss_dssp -SCCEEEEEEGGGTEEEEEE
T ss_pred -CeEEEEEEeCCCCccEEEe
Confidence 9999999999887654443
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=119.10 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=82.8
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
..+|.|...+.+..+.+|++++|.|.+.|.|.+ .+.|+|+|.+|..+.++.+..++...+|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a 84 (104)
T 2eny_A 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREA-APSDAGEVVFSV 84 (104)
T ss_dssp CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSC-CTTTCSCEEEEE
T ss_pred cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCC-CHHHCEEEEEEE
Confidence 347788888889999999999999999988754 899999999999889999988888899999999 799999999998
Q ss_pred EccCcceeeeEEEEEEeeccC
Q psy2776 749 TNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~~~~~ 769 (803)
.| ...++.|.|..++..
T Consensus 85 ~~----~~~~a~L~V~~~p~~ 101 (104)
T 2eny_A 85 RG----LTSKASLIVRERSGP 101 (104)
T ss_dssp TT----EEEEECEEEECCCSS
T ss_pred CC----eeEEEEEEEeCCCcC
Confidence 65 567888999754433
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-14 Score=141.59 Aligned_cols=173 Identities=11% Similarity=0.091 Sum_probs=111.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---ec------------CCCcEEEEec-CCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---IT------------DSKACRIFID-EETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i~------------~~~~~~~~~~-~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+++.|.|.+. .+.+.+.|+|+. .. +. ...++.+... .....|.|.+++.+|+|.
T Consensus 12 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~ 90 (252)
T 1oga_E 12 YLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF 90 (252)
T ss_dssp EEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred eEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEE
Confidence 57789999999999985 467899999853 11 10 1234444321 235689999999999999
Q ss_pred EEEEEEcCCC---CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 579 YTVTATNAAG---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 579 Y~C~a~n~~g---~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.+.|..+ .......|.|....
T Consensus 91 Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 117 (252)
T 1oga_E 91 YLCASSSRSSYEQYFGPGTRLTVTEDL----------------------------------------------------- 117 (252)
T ss_dssp EEEEEESSTTSCCEECCCEEEEEESCG-----------------------------------------------------
T ss_pred EEEEEecCCccceeECCCEEEEEeccc-----------------------------------------------------
Confidence 9999998621 11122345543210
Q ss_pred eeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE---E-----Eee
Q psy2776 656 ELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR---E-----IFD 724 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~---~-----~~~ 724 (803)
....+|.+... +....+.+|+.++|.|.+.|. |.+ .+.|++||.++..+.... . ..+
T Consensus 118 ------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 185 (252)
T 1oga_E 118 ------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALND 185 (252)
T ss_dssp ------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTT
T ss_pred ------------CCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCC
Confidence 00125555433 333445679999999999986 654 899999999886542211 0 011
Q ss_pred Cc---eEEEEEecCCCC-CCceeEEEEEEccCccee
Q psy2776 725 GE---NIILELKEADSE-TDAGDYKVVATNELGSAT 756 (803)
Q Consensus 725 ~~---~~~L~i~~v~~~-~D~G~Y~C~a~N~~G~~~ 756 (803)
+. ...|.|... .. +|.|.|+|.|.|..+...
T Consensus 186 gt~~~~s~L~i~~~-~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 186 SRYSLSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp CCEEEEEEEEEEHH-HHTCTTCEEEEEEEECCBCTT
T ss_pred CCEEEEEEEEECHH-HhccCCCEEEEEEEcCCCCCC
Confidence 22 235778775 23 367899999999876654
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=138.29 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=109.1
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--ee---e---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AE---I---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~---i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +...+.|+|.. .. + . ...++.+..+ .....|.|.+++.
T Consensus 8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 87 (248)
T 3u2s_H 8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRV 87 (248)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCH
Confidence 5678899999999999763 44689998742 11 1 0 0144554432 3457899999999
Q ss_pred CcCeEEEEEEEcCCC--------------C--------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEccc
Q psy2776 574 ADTSTYTVTATNAAG--------------S--------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENL 631 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g--------------~--------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 631 (803)
+|+|.|.|.+.+..+ . ......|.|..
T Consensus 88 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~------------------------------- 136 (248)
T 3u2s_H 88 EDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS------------------------------- 136 (248)
T ss_dssp GGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS-------------------------------
T ss_pred HHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc-------------------------------
Confidence 999999999987421 0 00111222211
Q ss_pred ccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeC
Q psy2776 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRN 709 (803)
Q Consensus 632 ~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~ 709 (803)
....+|.+........+..|+.++|.|.+.|. | .+.+.|+++
T Consensus 137 ------------------------------------~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~ 180 (248)
T 3u2s_H 137 ------------------------------------ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG 180 (248)
T ss_dssp ------------------------------------CCCBCCEEEEECCC------CEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ------------------------------------cCCCCCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEeEC
Confidence 12235666544444455679999999999985 5 347999999
Q ss_pred CeeccCCCC-eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 710 NKPLLSSPK-KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 710 ~~~l~~~~~-~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|..+..... .....++. .+.|.|... ..+| |.|+|.|.|..+.......|.+
T Consensus 181 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 181 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp TBCTTEEECCCEECTTSCEEEEEEEEEEGG-GBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred CccCceeecCceECCCCCEEEEEEEEEChh-hcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 864321110 01111121 246888887 5677 9999999999988766555443
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-14 Score=141.95 Aligned_cols=179 Identities=14% Similarity=0.187 Sum_probs=106.1
Q ss_pred ccccCCceee-eccccceeEEEEe-cC---Cce-eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 308 FLSKLPSVTL-VPHLGDATFQVEL-SS---PDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 308 ~~~~~~~~~~-~~~g~~~~l~C~~-~~---p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
++...+.... +.+|++++|.|.+ +. |.+ .+.|+|++..+...... . ......|.|.
T Consensus 18 v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~------~--------~~~~~~~~~~---- 79 (239)
T 1i1c_A 18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH------A--------PEKQSNSTLR---- 79 (239)
T ss_dssp EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC------C--------CEECTTSCEE----
T ss_pred EEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccc------c--------ceEcCCCcEE----
Confidence 3334444444 6789999999999 54 765 99999998655432100 0 0000111111
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
....|+|.+++.+|+|.|+|.+.+..+......
T Consensus 80 ---------------------------------------~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~-------- 112 (239)
T 1i1c_A 80 ---------------------------------------SVSELPIVERDWLNGKTFKCKVNSGAFPAPIEK-------- 112 (239)
T ss_dssp ---------------------------------------EEEEEECCHHHHHTTCCEEEEEECSSSSSCEEE--------
T ss_pred ---------------------------------------EEEEEEEEhhHccCCCeEEEEEecccCCCCcEE--------
Confidence 224599999999999999999999876532210
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeee--ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL--QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR- 537 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~- 537 (803)
.+.+ .+..+|. +.+.... .....|+.+.|.|.+.|. |+
T Consensus 113 --------------------------------~v~~~~~~~~~P~---v~v~~~~---~~~~~g~~~~L~C~~~g~~P~~ 154 (239)
T 1i1c_A 113 --------------------------------SISKPEGTPRGPQ---VYTMAPP---KEEMTQSQVSITCMVKGFYPPD 154 (239)
T ss_dssp --------------------------------EECCCSSCCBCCE---EEEECCC---GGGGGSSEEEEEEEEEEEBSSC
T ss_pred --------------------------------EEecCCCCCcCCE---EEEECCC---hHHhcCCcEEEEEEEeeeECCC
Confidence 1111 2223332 1111111 111247889999999985 44
Q ss_pred CeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 538 PEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 538 ~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+.|+|+|..+............++ +.|.|.....+|.|.|+|.|.|....
T Consensus 155 ~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 155 IYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp CEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred eEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 48999999998864322111112221 23555555556799999999998654
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.6e-14 Score=117.96 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=77.9
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
...+|.|...+....+.+|+.+.|.|.+.|.| |.+.|+|+|..+..+.++.+. + ..|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~~-~~~D~G~Y~C~a 79 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--G--EEVEVRDS-IPADSGLYACVT 79 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--S--SEEEESSC-CGGGSEEEEEEE
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--C--CEEEECCC-ChHHCEEEEEEe
Confidence 34578888888889999999999999999998 799999999999877776543 3 37999999 799999999999
Q ss_pred EccCcceeeeEEEEE
Q psy2776 749 TNELGSATHGARVTV 763 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V 763 (803)
.|..|..+..+.|.|
T Consensus 80 ~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 80 SSPSGSDTTYFSVNV 94 (95)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEE
Confidence 999999998888877
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=117.53 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=81.8
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
..||.|...+....+.+|+++.|.|.+.+ |.+.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 83 (103)
T 2edf_A 6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGA-SLKDAGEYTCEVE 83 (103)
T ss_dssp CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSC-CTTTCSEEEEECS
T ss_pred CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCC-CcccCEEEEEEEc
Confidence 34888999888999999999999999997 888999999999999888999888888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEeec
Q psy2776 750 NELGSATHGARVTVDVEK 767 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~~~ 767 (803)
| .+.++.|.|..++
T Consensus 84 n----~~~~~~l~V~~~p 97 (103)
T 2edf_A 84 A----SKSTASLHVEEKA 97 (103)
T ss_dssp S----CEEEEEEEECCCS
T ss_pred c----CCcEEEEEEeCCC
Confidence 9 4677888885433
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=137.05 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=85.1
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee--eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT--AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 497 (803)
.+..+|+|.+++.+|+|.|.|.+.+.... .... ....|
T Consensus 76 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~----------------------------------------~~~~l 115 (253)
T 3liz_H 76 KNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWG----------------------------------------QGTLV 115 (253)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEEC----------------------------------------CCEEE
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCCcceeeEEC----------------------------------------CCEEE
Confidence 35678999999999999999999875311 0000 02233
Q ss_pred ccC-CCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCeeecCCCcEEEEecC---CeEEEEEeee
Q psy2776 498 QIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAEITDSKACRIFIDE---ETSTIAIYSV 571 (803)
Q Consensus 498 ~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v 571 (803)
.|. ..+..|.+..... ...+..|+.+.|.|.+.+ .|.+ .+.|+++|..+...........+ ..+.|.|.+.
T Consensus 116 ~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~ 192 (253)
T 3liz_H 116 TVSAAKTTPPSVYPLAP---GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS 192 (253)
T ss_dssp EECSSCCBCCEEEEECC---------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETT
T ss_pred EEeccCCCCCeEEEecC---CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHH
Confidence 343 2222332221111 234567999999999998 6666 89999998733110000000000 1267999999
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
..+| |.|+|.|.|..+.......|.+.
T Consensus 193 ~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 193 TWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp STTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred HCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 9999 99999999999888877777765
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=117.50 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=79.2
Q ss_pred CCeeEeccce---eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEE---KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~---~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+|.++..+.. ..+.+|+++.|.|.+.|.|.+ +.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a 84 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEA-KVQDSGEFECRT 84 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSC-CTTTCEEEEEEC
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCC-ChhhCEEEEEEE
Confidence 5666666666 789999999999999999999 99999999999888998888888899999999 799999999999
Q ss_pred EccCcceeeeEEEEEEeeccC
Q psy2776 749 TNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~~~~~ 769 (803)
.|..+ .+.|.|.+++..
T Consensus 85 ~n~~~----~~~l~V~~~P~p 101 (104)
T 2e6p_A 85 EGVSA----FFGVTVQDPSGP 101 (104)
T ss_dssp SSCCC----CEEEEEECCCCS
T ss_pred CCceE----EEEEEEcCCCCC
Confidence 99744 567777655443
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-14 Score=120.91 Aligned_cols=93 Identities=24% Similarity=0.378 Sum_probs=72.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... ...|.|.++ +.+|+|.|+|.|.|.
T Consensus 10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~L~i~~v-~~~D~G~Y~C~a~n~ 86 (108)
T 3kvq_A 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG--NRNLTIRRV-RKEDEGLYTCQACSV 86 (108)
T ss_dssp -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETT--TTEEEECSC-CGGGCEEEEEEEC--
T ss_pred CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCC--CcEEEEeec-CcccCEEEEEEEEeC
Confidence 78888888889999999999999999999999999999999887777655433 347999999 799999999999999
Q ss_pred CcceeeeEEEEEEeec
Q psy2776 752 LGSATHGARVTVDVEK 767 (803)
Q Consensus 752 ~G~~~~~~~l~V~~~~ 767 (803)
.|.....+.|.|.+++
T Consensus 87 ~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 87 LGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp --CEEEEEEEEEEC--
T ss_pred CCceEEEEEEEEeCCC
Confidence 9999999999997543
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=118.11 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=81.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
..+|.|...+....+.+|+++.|.|.+.|.|.+ +.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 83 (106)
T 2dlt_A 6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDV-RPEDEGDYTFVPD 83 (106)
T ss_dssp CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSC-CTTTCSCEEEEEE
T ss_pred CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCC-CcCCCEEEEEEEc
Confidence 348999999999999999999999999999888 99999999999888998888888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|. ..+.++.|.|.
T Consensus 84 n~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 84 GY--ALSLSAKLNFL 96 (106)
T ss_dssp TS--CCCCCBCEEEE
T ss_pred cC--CceEEEEEEEE
Confidence 98 55566777775
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-13 Score=125.02 Aligned_cols=95 Identities=28% Similarity=0.475 Sum_probs=85.4
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+... .....|.|.++ +.+|+|.|+|.|.
T Consensus 40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 118 (154)
T 1fhg_A 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV-CGDDDAKYTCKAV 118 (154)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSC-CGGGCEEEEEEEE
T ss_pred CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCC-ChhcCEEEEEEEE
Confidence 388899888889999999999999999999999999999999988888877654 34678999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEee
Q psy2776 750 NELGSATHGARVTVDVE 766 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~~ 766 (803)
|.+|.....+.|.|...
T Consensus 119 N~~G~~~~~~~l~V~~~ 135 (154)
T 1fhg_A 119 NSLGEATCTAELLVETM 135 (154)
T ss_dssp ETTEEEEEEEEEEEECC
T ss_pred ECCCeEEEEEEEEEeCc
Confidence 99999999999999653
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-13 Score=129.80 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=103.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--e---ee-------cCCCcEEEEec---CCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--A---EI-------TDSKACRIFID---EETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~---~i-------~~~~~~~~~~~---~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|+++.|.|.+.+.+ +.+.|+|.. . .+ ....++.+..+ .+...|.|.+++.+|+|.|.|
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 88 (207)
T 1ypz_E 10 ALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC 88 (207)
T ss_dssp EEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEE
T ss_pred eEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEE
Confidence 57789999999999998754 489999853 1 11 02345655543 456799999999999999999
Q ss_pred EEEcCCC---------C--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 582 TATNAAG---------S--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 582 ~a~n~~g---------~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
.+.+..+ . ......|.|....
T Consensus 89 ~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~------------------------------------------------ 120 (207)
T 1ypz_E 89 AADTWHISEGYELGTDKLVFGQGTQVTVEPKS------------------------------------------------ 120 (207)
T ss_dssp EEECBCCCTTCCCCCCCCEECCCEEEEEECCC------------------------------------------------
T ss_pred EEecCCcccccccccceeeecCccEEEEccCC------------------------------------------------
Confidence 9998743 1 1122455553310
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEEEeeCceE
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFDGENI 728 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~ 728 (803)
....+|.+... .+ .+.|.|.+.|. |. +.+.|+++ ..+...........+..+
T Consensus 121 -----------------~~~~~P~v~~~-------~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y 174 (207)
T 1ypz_E 121 -----------------QPPAKPSVFIM-------KN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKY 174 (207)
T ss_dssp -----------------CCCCCCEEEEE-------EE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSE
T ss_pred -----------------CCCCCCeEEEe-------CC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcE
Confidence 01113433321 11 27999999986 54 69999999 666543222111222333
Q ss_pred EEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 729 ILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 729 ~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.+ ......+|.|.|+|.|.|..+...
T Consensus 175 ~~--~~~~~~~~~~~ytC~v~~~~~~~~ 200 (207)
T 1ypz_E 175 SA--VKLGQYGDSNSVTCSVQHNSETVH 200 (207)
T ss_dssp EE--EECEEESSTTTCEEEEEETTEEEE
T ss_pred EE--EEeecccCCCcEEEEEEECCccEe
Confidence 33 233133678999999999887643
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=118.42 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=68.6
Q ss_pred ecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC-------ceEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 685 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG-------ENIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~-------~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
..+..+.|.|.+.|.|.|.|+|+|||.+|..+.++.+.... ....|.|.++ +..|+|.|+|+|.|.+|.+++
T Consensus 13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~~~ 91 (126)
T 1he7_A 13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLAANPFGQASA 91 (126)
T ss_dssp CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESC-CGGGCEEEEEEEEETTEEEEE
T ss_pred ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcC-CCCCCEEEEEEEEECCCeEEE
Confidence 35789999999999999999999999999988776544321 2467999999 799999999999999999999
Q ss_pred eEEEEEEe
Q psy2776 758 GARVTVDV 765 (803)
Q Consensus 758 ~~~l~V~~ 765 (803)
++.|.|..
T Consensus 92 t~~l~v~~ 99 (126)
T 1he7_A 92 SIMAAFMD 99 (126)
T ss_dssp EEEECCCS
T ss_pred EEEEEEEc
Confidence 88888853
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=135.95 Aligned_cols=175 Identities=16% Similarity=0.219 Sum_probs=105.5
Q ss_pred CceeeeccccceeEEEEe-c-CCc--eeeEEeecCeec-cccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccce
Q psy2776 313 PSVTLVPHLGDATFQVEL-S-SPD--IQVKWLKKGKEI-KESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVS 387 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~-~p~--~~i~W~~~g~~l-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 387 (803)
|....+..|+.++|.|.+ + .|. ..+.|+++|..+ ........ ....|.|.
T Consensus 20 p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~---------------~~~~g~~~---------- 74 (231)
T 2w59_A 20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQ---------------EHFNGTYS---------- 74 (231)
T ss_dssp CCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEE---------------ECTTSCEE----------
T ss_pred cChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccce---------------ECCCCcEE----------
Confidence 444455679999999999 5 463 499999998877 32111100 01112221
Q ss_pred eeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
....|+|.++..+|.|.|+|.|.|..+.... .+.|.+.
T Consensus 75 ---------------------------------~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~---------~~~v~~~ 112 (231)
T 2w59_A 75 ---------------------------------ASSAVPVSTQDWLSGERFTCTVQHEELPLPL---------SKSVYRN 112 (231)
T ss_dssp ---------------------------------EEEEEECCHHHHHTTCCEEEEEECTTCSSCE---------EEEECCC
T ss_pred ---------------------------------EEEEEEecchhccCCCEEEEEEEcCCCCCce---------EEEEecC
Confidence 1235899999999999999999997654222 1111100
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-C-CCeeEEeeC
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P-RPEISWMKN 545 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p-~~~v~W~~~ 545 (803)
. ....+| .+.+.... ... ..|..+.|.|.+.|. | .+.+.|+|+
T Consensus 113 --~---------------------------~~~~~P---~v~v~~~~--~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~ 157 (231)
T 2w59_A 113 --T---------------------------GPTTPP---LIYPFAPH--PEE-LSLSRVTLSCLVRGFRPRDIEIRWLRD 157 (231)
T ss_dssp --C---------------------------SCCBCC---EEEEECCC--GGG-GGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred --C---------------------------CCCcCC---EEEEeCCC--HHH-hccCceEEEEEEEeccCCCcEEEEEEC
Confidence 0 000112 11111111 011 124579999999996 4 368999999
Q ss_pred CeeecCCCcEE--EEec--------CC------eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 546 GAEITDSKACR--IFID--------EE------TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 546 g~~i~~~~~~~--~~~~--------~~------~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|..+..+.... .... .+ .+.|.|.....+|.|.|+|.|.|....
T Consensus 158 g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 158 HRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp TEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred CEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 99987653111 1111 11 256888888888999999999998754
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-13 Score=133.08 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=113.0
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|+++.|.|.+.+. +...+.|+|.. . .+ . ...++.+..+ .....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (230)
T 3n9g_H 9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS 88 (230)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence 4668899999999999763 34679999742 1 11 0 1135555433 2456799999999
Q ss_pred CcCeEEEEEEEcCCC-----Ce---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 574 ADTSTYTVTATNAAG-----ST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-----~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
+|+|.|.|.+.+..+ .. .....|.|...
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~-------------------------------------------- 124 (230)
T 3n9g_H 89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSA-------------------------------------------- 124 (230)
T ss_dssp GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSS--------------------------------------------
T ss_pred hhCEEEEEEEccCCCCcccccccccCCCEEEEEEec--------------------------------------------
Confidence 999999999988641 11 12233444221
Q ss_pred CCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCC---eE
Q psy2776 646 SVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPK---KR 720 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~---~~ 720 (803)
...+|.+........+..|+.++|.|.+.|. | .+.+.| ++..+..+.. ..
T Consensus 125 -----------------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~ 179 (230)
T 3n9g_H 125 -----------------------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAV 179 (230)
T ss_dssp -----------------------CCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCE
T ss_pred -----------------------CCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCce
Confidence 1125555544444455689999999999986 4 346899 6555432110 01
Q ss_pred EEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 721 EIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 721 ~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
...++. .+.|.|... ..+| |.|+|.|.|..+.......|.|
T Consensus 180 ~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~~~v 223 (230)
T 3n9g_H 180 LQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKRVEP 223 (230)
T ss_dssp ECTTSCEEEEEEEEEEST-TBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred ECCCCCEEEEEEEEECHH-HcCC-CeEEEEEEECCCCcceEEEccC
Confidence 111121 347889988 6778 9999999999988776665555
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=138.51 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=69.9
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee--------eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT--------AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYK 491 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (803)
.+...|+|.+++.+|+|.|.|.+.+..|. ......
T Consensus 76 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~------------------------------------- 118 (257)
T 3bn9_D 76 KNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNW------------------------------------- 118 (257)
T ss_dssp TTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEE-------------------------------------
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeee-------------------------------------
Confidence 35678999999999999999999987541 000000
Q ss_pred cceeeeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC----eE
Q psy2776 492 TRTTNLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE----TS 564 (803)
Q Consensus 492 ~~~~~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~----~~ 564 (803)
.....|.|.. ++..|.+.+... ...+.+|+.++|.|.+.|. |.+ .+.|++++..+.......+...++ .+
T Consensus 119 ~~~t~L~V~~~~~~~P~v~~~~p---~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s 195 (257)
T 3bn9_D 119 GQGTMVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSS 195 (257)
T ss_dssp CCCEEEEECSSCCBCCEECCCCC--------------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEE
T ss_pred CCcEEEEecCCCCcCCcEEEecC---cccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEE
Confidence 0022344443 222222221111 1235679999999999986 777 999999987642110001111111 25
Q ss_pred EEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 565 ~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.|.|.++..+| |.|+|.|.|..........+
T Consensus 196 ~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i 226 (257)
T 3bn9_D 196 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 226 (257)
T ss_dssp ECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred EEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence 68888888778 99999999976554444433
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=145.13 Aligned_cols=167 Identities=13% Similarity=0.159 Sum_probs=110.4
Q ss_pred EeecceeEEEEEEcCc---CC-CeeEEeeCCeeecCCCcE--EEEec---CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGF---PR-PEISWMKNGAEITDSKAC--RIFID---EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~---p~-~~v~W~~~g~~i~~~~~~--~~~~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+.++|.|.+.|. |. ..|.|+|++..+...... ..... ...+.|.|..+..+|+|.|+|.|.|..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6889999999999988 33 369999998765422100 00000 123579999999999999999999987653
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.+.. ...
T Consensus 260 ~~~~~v~~~~-------------------------------------------------------------------~~~ 272 (376)
T 2aty_A 260 PIEKTISKTK-------------------------------------------------------------------GRP 272 (376)
T ss_pred ceEEEEcCCC-------------------------------------------------------------------CCC
Confidence 3322221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCCeE--EEeeCc---eEEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKKR--EIFDGE---NIILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~--~~~~~~---~~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|+ | .+.|.|+|||.++....... ...++. ...|.|... ..+|.|.
T Consensus 273 ~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~-~~~~~~~ 351 (376)
T 2aty_A 273 KAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKS-NWEAGNT 351 (376)
T ss_pred cCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHH-HhCCCCc
Confidence 25666655555445568999999999997 3 45899999999875432221 122332 345677666 4567999
Q ss_pred EEEEEEccCcc
Q psy2776 744 YKVVATNELGS 754 (803)
Q Consensus 744 Y~C~a~N~~G~ 754 (803)
|+|.|.|..-.
T Consensus 352 YtC~v~h~~l~ 362 (376)
T 2aty_A 352 FTCSVLHEGLH 362 (376)
T ss_pred EEEEEEeCCCC
Confidence 99999997654
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-13 Score=113.57 Aligned_cols=86 Identities=24% Similarity=0.343 Sum_probs=79.2
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 95 (103)
T 3qp3_A 16 RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYAT 95 (103)
T ss_dssp CCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEE
Confidence 46788999999999999999999999999999998888888877777789999999999999999999999999999999
Q ss_pred EEEeee
Q psy2776 596 LQVLGY 601 (803)
Q Consensus 596 l~V~~~ 601 (803)
|.|.+.
T Consensus 96 l~V~~~ 101 (103)
T 3qp3_A 96 LDVTGG 101 (103)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999764
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-14 Score=142.55 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=104.8
Q ss_pred ceEEeecceeEEEEEEcCcCC---CeeEEeeCCeeecCCCcE-EE-Eec---CCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR---PEISWMKNGAEITDSKAC-RI-FID---EETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~---~~v~W~~~g~~i~~~~~~-~~-~~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
...+.+|+.++|.|.+.|.++ +.+.| + +..+...... .. ... ...+.|.|.++..+|+|.|+|.|.|..+
T Consensus 13 ~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~ 90 (214)
T 1ow0_A 13 LEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES 90 (214)
T ss_dssp HHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred hHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecCCC
Confidence 455678999999999999865 68999 4 4333221000 00 000 1246799999999999999999999876
Q ss_pred CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 589 STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 589 ~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
.......+.+..
T Consensus 91 ~~~~~~~i~~~~-------------------------------------------------------------------- 102 (214)
T 1ow0_A 91 KTPLTATLSKSG-------------------------------------------------------------------- 102 (214)
T ss_dssp SSCEEEEEECCS--------------------------------------------------------------------
T ss_pred CCceeEeeccCC--------------------------------------------------------------------
Confidence 543333332100
Q ss_pred CCCCCeeEecc-ceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC----eEEE---eeCce---EEEEEecC
Q psy2776 669 PGQAPLFIERF-EEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK----KREI---FDGEN---IILELKEA 735 (803)
Q Consensus 669 ~~~~p~~~~~~-~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~----~~~~---~~~~~---~~L~i~~v 735 (803)
...+|.+...+ ....+..|+.++|.|.+.|. |. +.|.|+|||..+..+.. .... .++.. ..|.|...
T Consensus 103 ~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~ 182 (214)
T 1ow0_A 103 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAE 182 (214)
T ss_dssp SCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHH
T ss_pred CCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHH
Confidence 01145543322 22346679999999999996 54 48999999998865421 1222 22322 33455543
Q ss_pred CCCCCceeEEEEEEccCcc
Q psy2776 736 DSETDAGDYKVVATNELGS 754 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N~~G~ 754 (803)
..+|.|.|+|.|.|....
T Consensus 183 -~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 183 -DWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp -HHHHTCCEEEEEECTTCT
T ss_pred -HccCCCEEEEEEECCCCC
Confidence 224589999999998754
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=119.06 Aligned_cols=92 Identities=25% Similarity=0.447 Sum_probs=79.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. +.++.+..++ +|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v-~~~D~G~Y~C~a 81 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYA-KLGDTGRYTCIA 81 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESC-CGGGCCCEEEEE
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccC-CcCCCEEEEEEE
Confidence 3488888888889999999999999999999999999999998864 4555544433 6999999 799999999999
Q ss_pred EccCcceeeeEEEEEEe
Q psy2776 749 TNELGSATHGARVTVDV 765 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~ 765 (803)
.|..|.....+.|.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (118)
T 2eo9_A 82 STPSGEATWSAYIEVQE 98 (118)
T ss_dssp ECSSCEEEEECCEEEEC
T ss_pred EcCCCcEEEEEEEEEEe
Confidence 99999999999988864
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=118.61 Aligned_cols=86 Identities=17% Similarity=0.352 Sum_probs=76.9
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+. ..++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 110 (118)
T 2e7c_A 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIR 110 (118)
T ss_dssp SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEE
T ss_pred CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEE
Confidence 46788999999999999999999999999999987 45666666667789999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 111 l~V~~~P 117 (118)
T 2e7c_A 111 IRVVEKA 117 (118)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9997754
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=111.78 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=70.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.+ |.|.++|+|||.+|..+.++.+..++....|.|.++..+|+|.|+|.|.| .+.++.
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~ 78 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL 78 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence 4678899999999999976 88999999999999999999988888888999999999999999999854 566777
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
|.|..
T Consensus 79 l~V~e 83 (84)
T 2lu7_A 79 VSVEE 83 (84)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 88765
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=114.67 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=70.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe--eC---ceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DG---ENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~--~~---~~~~L~i~~v~~~~D~G~Y~C 746 (803)
||++.... ....|+.+.|.|.+.|.|.|.+.|+|+|.+|..+.+..... .+ ....|.|.++ +.+|+|.|+|
T Consensus 4 pP~i~~~~---~~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C 79 (103)
T 1wwb_X 4 APTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP-THMNNGDYTL 79 (103)
T ss_dssp CCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESC-CGGGCEEEEE
T ss_pred CCEEEecc---CceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCC-CcccCEEEEE
Confidence 56554322 13458899999999999999999999999998876642221 11 2356999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|+|.+|.++.++.|.|.
T Consensus 80 ~A~N~~G~~~~~~~l~V~ 97 (103)
T 1wwb_X 80 IAKNEYGKDEKQISAHFM 97 (103)
T ss_dssp EEECSSCEEEEEEEECCS
T ss_pred EEEeCCCcEeEEEEEEEC
Confidence 999999999999998884
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=117.31 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=79.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 15 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 94 (114)
T 2cqv_A 15 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 94 (114)
T ss_dssp CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred CCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEE
Confidence 35788999999999999999999999999999998888888877777889999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|...|
T Consensus 95 l~V~~~p 101 (114)
T 2cqv_A 95 LTVVDKP 101 (114)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998765
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-12 Score=132.43 Aligned_cols=168 Identities=13% Similarity=0.154 Sum_probs=107.5
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. ..++... .+...|.|.++
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 92 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL 92 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence 4566788999999999998765 5789999863 1110 1122222 24578999999
Q ss_pred CCCcceEEEEEEEcCCcCe-e--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 205 SESSEGRYTCKATNEAGTA-E--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~-~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+.+|+|.|.|.+.|..+.. . ....|.|...+. .
T Consensus 93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~--~------------------------------------------ 128 (261)
T 2xqy_G 93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT--T------------------------------------------ 128 (261)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC--B------------------------------------------
T ss_pred CcccCeEEEEEEecCCCcceEECCCEEEEEccCCC--C------------------------------------------
Confidence 9999999999999865321 1 234566654210 0
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeecccc-ceeEEEEc
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKES-ARHIITSR 357 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~-~~~~~~~~ 357 (803)
.| .+....+.. .+..|+.++|.|.+ + .|.+ .+.|++++..+... ....+ ..
T Consensus 129 ---------------------~P--~v~~~~p~~-~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~-~~ 183 (261)
T 2xqy_G 129 ---------------------AP--SVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QS 183 (261)
T ss_dssp ---------------------CC--EEEEECCCC-C--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE-ET
T ss_pred ---------------------CC--eEEEeCCCc-cccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCcee-cC
Confidence 00 000001111 23458999999999 5 4765 99999998876421 11111 22
Q ss_pred Cc---eeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 358 GT---QRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 358 ~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
+. ...|.|.....+| |.|+|.+.|......
T Consensus 184 g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~ 216 (261)
T 2xqy_G 184 DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK 216 (261)
T ss_dssp TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred CcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence 22 2568898888888 999999999765544
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=117.23 Aligned_cols=94 Identities=18% Similarity=0.284 Sum_probs=76.2
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec---CCCceEEeeCCe-eccC--CCCeEEEee--C----ceEEEEEecCCCC
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNK-PLLS--SPKKREIFD--G----ENIILELKEADSE 738 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~---p~~~v~W~~~~~-~l~~--~~~~~~~~~--~----~~~~L~i~~v~~~ 738 (803)
..+.|+..+..+.|.+|++++|.|.+.|. |.|.|.|+|+.. .+.. +.++.+... . ..+.|.|.++ ..
T Consensus 11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~ 89 (118)
T 2edn_A 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKV-VL 89 (118)
T ss_dssp CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSC-CT
T ss_pred CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeC-Ch
Confidence 36778888999999999999999999885 789999999752 2222 234444321 1 2578999999 79
Q ss_pred CCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 739 TDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|+|.|+|+|.|..|.+++.+.|.|++
T Consensus 90 ~D~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 90 GDRGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp TTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred hhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 999999999999999999999999975
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=111.31 Aligned_cols=89 Identities=21% Similarity=0.380 Sum_probs=80.4
Q ss_pred CCCeeEeccce-eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+.. ..+.+|+++.|.|.+. .|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a- 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNC-QMTDDSEYYVTA- 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEE-CTTTCCEEEEEE-
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCC-CcCcCEEEEEEE-
Confidence 47889888887 6889999999999998 7999999999999999888999888888889999999 799999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|..+.++.|.|..
T Consensus 83 ---g~~~~~~~l~V~~ 95 (100)
T 2yuv_A 83 ---GDEKCSTELFVRS 95 (100)
T ss_dssp ---TTEEEEEEEEECC
T ss_pred ---CCceEEEEEEEec
Confidence 7788888898854
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=134.83 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=46.4
Q ss_pred ecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 522 VKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.|+.+.|.|.+.|+ |.+ .+.|+|+|..+............+ .+.|.|......|.|.|+|.|.+..-
T Consensus 144 ~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 144 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 38899999999995 543 799999999875321111111111 24566666666789999999999854
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-13 Score=117.37 Aligned_cols=89 Identities=20% Similarity=0.375 Sum_probs=78.6
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.||.|...+....+.+|+++.|.|.+.|.| +.+.|+|||.++..+. ++.+..++....|.|.++ +.+|+|.|+|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C 84 (101)
T 2edk_A 7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV-VQEDRGRYQV 84 (101)
T ss_dssp CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSC-CGGGCSBEEE
T ss_pred CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCC-ChhhCEEEEE
Confidence 478899988899999999999999999999 9999999999998777 668888888889999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEEe
Q psy2776 747 VATNELGSATHGARVTVDV 765 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~~ 765 (803)
.|.| .+.++.|.|..
T Consensus 85 ~a~n----~~~~~~l~V~~ 99 (101)
T 2edk_A 85 ITNG----GQCEAELIVEE 99 (101)
T ss_dssp ECSS----CEECCBEEEEC
T ss_pred EEcC----CcEEEEEEEeC
Confidence 9998 44567777754
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=110.81 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=77.6
Q ss_pred cceEEeecceeEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|. |.+.+.|+|++..+..+.++.+....+...|.|.++..+|+|.|+|.|.|..|....++
T Consensus 9 ~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 88 (97)
T 2bk8_A 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88 (97)
T ss_dssp CCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred cCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEE
Confidence 36788999999999999997 88999999999999888888877767778999999999999999999999999999999
Q ss_pred EEEEee
Q psy2776 595 SLQVLG 600 (803)
Q Consensus 595 ~l~V~~ 600 (803)
.|.|.+
T Consensus 89 ~l~V~~ 94 (97)
T 2bk8_A 89 ELFVKG 94 (97)
T ss_dssp EEEETT
T ss_pred EEEEEe
Confidence 998864
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-13 Score=112.44 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=76.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eeccce-eEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIKGR-NITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+... .+........|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 81 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL 81 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence 567777778888999999999999999999999999999 777643 34444566889999999999999999999999
Q ss_pred cCeeeEEEEEEe
Q psy2776 221 GTAETSCTLLVQ 232 (803)
Q Consensus 221 g~~~~s~~l~V~ 232 (803)
|....++.|.|+
T Consensus 82 G~~~~~~~l~V~ 93 (93)
T 1wit_A 82 GEDEAIFEVIVQ 93 (93)
T ss_dssp EEEEEEEEEEEC
T ss_pred CeEEEEEEEEEC
Confidence 988888888773
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-13 Score=137.03 Aligned_cols=176 Identities=14% Similarity=0.209 Sum_probs=109.6
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec------cc----------e-eEEEe--cCeeEEEEecCCCCc
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI------KG----------R-NITYE--NNVARFTVVNCSESS 208 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~------~~----------~-~~~~~--~~~~~L~i~~v~~~d 208 (803)
.+..+.+.+|++++|.|.+.+.+.+.+.|+|... .. .. . ++... .... |.|.+++.+|
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~D 85 (253)
T 3to4_D 7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQ 85 (253)
T ss_dssp ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSS
T ss_pred CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhh
Confidence 3556788899999999999888888999998321 10 00 0 22221 1122 9999999999
Q ss_pred ceEEEEEEEcCCc---Ce---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 209 EGRYTCKATNEAG---TA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 209 ~G~Y~C~a~n~~g---~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
+|.|.|.+.+..+ .. .....|.|........
T Consensus 86 sG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~------------------------------------------- 122 (253)
T 3to4_D 86 GRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVF------------------------------------------- 122 (253)
T ss_dssp CEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCB-------------------------------------------
T ss_pred CeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCC-------------------------------------------
Confidence 9999999987654 11 1123555543210000
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEE---E-
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHII---T- 355 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~---~- 355 (803)
.|. +....+....+..|+.++|.|.+ + .|.+ .+.|+++|.++..+..... .
T Consensus 123 --------------------~P~--v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~ 180 (253)
T 3to4_D 123 --------------------PPE--VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKE 180 (253)
T ss_dssp --------------------CCE--EEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEES
T ss_pred --------------------CCe--EEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceecccccccc
Confidence 000 00001111223347889999999 5 6665 8999999999875432211 1
Q ss_pred ----EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeee
Q psy2776 356 ----SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 356 ----~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~ 391 (803)
.++.. +.|.|.....+| .|.|+|.+.+..-...+.|
T Consensus 181 ~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~~~~~ 224 (253)
T 3to4_D 181 QPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEW 224 (253)
T ss_dssp STTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTTSCC
T ss_pred cccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCCCccc
Confidence 23333 467777777777 7799999999765555555
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-13 Score=112.27 Aligned_cols=91 Identities=31% Similarity=0.476 Sum_probs=78.2
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-eEE---EecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-NIT---YENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... +.. ..++...|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence 4677877888899999999999999999999999999999988643 222 235567899999999999999999999
Q ss_pred CCcCeeeEEEEEEee
Q psy2776 219 EAGTAETSCTLLVQG 233 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~ 233 (803)
..|....++.|.|..
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 84 IAGETSSHAFLLVQA 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEec
Confidence 999998888888864
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=112.01 Aligned_cols=94 Identities=26% Similarity=0.391 Sum_probs=83.3
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+ +.|.+.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~--- 81 (103)
T 2dku_A 7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISAL-EKADSDTYTCD--- 81 (103)
T ss_dssp CCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESC-CTTTCSEEEEE---
T ss_pred CCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCC-CcccCEEEEEE---
Confidence 37888888889999999999999994 88999999999999999888998888888889999999 79999999998
Q ss_pred cCcceeeeEEEEEEeeccCC
Q psy2776 751 ELGSATHGARVTVDVEKVGR 770 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~~~~~p 770 (803)
+|..+..+.|.|...+..|
T Consensus 82 -~g~~~~~~~l~V~~~p~~p 100 (103)
T 2dku_A 82 -IGQAQSRAQLLVQGRRSGP 100 (103)
T ss_dssp -CSSCBCCEEEEEECSCCCC
T ss_pred -eCCceEEEEEEEeCccCCC
Confidence 7888889999997655433
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-12 Score=118.39 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=103.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
...|.+|+++.|+|.+.. +.|. +.|.-. ++.+.. ........|.|.+++. | |.|.|.+.+........+
T Consensus 8 ~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~------~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~ 78 (185)
T 1iam_A 8 KVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELL------LPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKT 78 (185)
T ss_dssp EEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEEC------SSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEEC
T ss_pred CcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEe------ccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEEE
Confidence 466899999999999975 5554 777531 111110 0012336799999983 4 999999987756677788
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|..+| ..
T Consensus 79 ~l~V~~~P----------------------------------------------------------------------~~ 88 (185)
T 1iam_A 79 FLTVYWTP----------------------------------------------------------------------ER 88 (185)
T ss_dssp EEEEEBCC----------------------------------------------------------------------SE
T ss_pred EEEEeCCC----------------------------------------------------------------------CC
Confidence 88887654 11
Q ss_pred eEeccceeEEecCCeEEEEEEEeec-CCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~-p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+...+....+.+|+.++|.|.+.|. |.. .|.|+++++.+..... ..+..+.+|.+... ..+|...|+|+|.|.
T Consensus 89 v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~---~~~~~~~tl~~~~~-reD~g~~~sC~A~~~ 164 (185)
T 1iam_A 89 VELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVR-RDHHGAQFSCRTELD 164 (185)
T ss_dssp EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECC-SSCSSCEEEEEEEEE
T ss_pred CEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC---CCccccEEEEEece-eccCCCeEEEEEEec
Confidence 2222233458899999999999885 554 4899999998853210 11123346777664 444444999999999
Q ss_pred Ccce
Q psy2776 752 LGSA 755 (803)
Q Consensus 752 ~G~~ 755 (803)
++..
T Consensus 165 l~~~ 168 (185)
T 1iam_A 165 LRPQ 168 (185)
T ss_dssp CGGG
T ss_pred Cccc
Confidence 8843
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.3e-14 Score=123.61 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=81.8
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccC--CCCeEEE--eeCc--eEEEEEecCCCCCCc-e
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLS--SPKKREI--FDGE--NIILELKEADSETDA-G 742 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~--~~~~~~~--~~~~--~~~L~i~~v~~~~D~-G 742 (803)
.+|.|.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+.. ..++.+. .... ...|.|.++ +.+|+ |
T Consensus 13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~~G 90 (122)
T 2cry_A 13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI-VRADFQT 90 (122)
T ss_dssp SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC-CHHHHHS
T ss_pred cCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC-ChhhCCc
Confidence 3778877 7778899999999999999999997 999999999875 4566653 2222 668999999 78998 9
Q ss_pred eEEEEEEccCcceeeeEEEEEEeeccCCC
Q psy2776 743 DYKVVATNELGSATHGARVTVDVEKVGRP 771 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp 771 (803)
.|+|.|.|.+|.+...+.|.|..+....|
T Consensus 91 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~p 119 (122)
T 2cry_A 91 IYNCTAWNSFGSDTEIIRLKEQGSEMSGP 119 (122)
T ss_dssp CEEEEEECSSCEEEEEECCCCSCSSCCCC
T ss_pred eEEEEEECCCCeEEEEEEEEECCCCCCCC
Confidence 99999999999999999998875444433
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-13 Score=113.04 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=74.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+ .|.+.+.|+|+|..|..+.++.+...+....|.|.++..+|+|.|+|.|.|. ..+.++.
T Consensus 15 ~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~ 90 (100)
T 2yuz_A 15 TDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAK 90 (100)
T ss_dssp CCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEE
T ss_pred CceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEE
Confidence 46789999999999999 7899999999999999888988888777789999999999999999999998 5677888
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 91 L~V~~~P 97 (100)
T 2yuz_A 91 VHVISGP 97 (100)
T ss_dssp EEEECCS
T ss_pred EEEeCCC
Confidence 8888765
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=114.19 Aligned_cols=91 Identities=30% Similarity=0.459 Sum_probs=79.7
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.............|.|.++..+|+|.|+|.|.|..|
T Consensus 9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 88 (99)
T 2yr3_A 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88 (99)
T ss_dssp CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSC
T ss_pred ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCC
Confidence 45678888888899999999999999999999999999999888765555666778999999999999999999999999
Q ss_pred CeeeEEEEEEe
Q psy2776 222 TAETSCTLLVQ 232 (803)
Q Consensus 222 ~~~~s~~l~V~ 232 (803)
....++.|.|+
T Consensus 89 ~~~~~~~l~V~ 99 (99)
T 2yr3_A 89 QVSCSAWVTVH 99 (99)
T ss_dssp EEEEECCEEEC
T ss_pred eEEEEEEEEEC
Confidence 88888777763
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=129.67 Aligned_cols=177 Identities=16% Similarity=0.233 Sum_probs=108.7
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc----------------ceeEEEe---cCeeEEEEecCCCC
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK----------------GRNITYE---NNVARFTVVNCSES 207 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~----------------~~~~~~~---~~~~~L~i~~v~~~ 207 (803)
..+..+.+.+|++++|.|.+.. +.+.+.|+|++. .+. ..++... .+..+|.|.+++.+
T Consensus 4 q~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~ 82 (238)
T 1bec_A 4 QSPRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPS 82 (238)
T ss_dssp EECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGG
T ss_pred cCCCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcc
Confidence 3456678899999999999954 678899998641 100 1122221 24568999999999
Q ss_pred cceEEEEEEEcCCc---Ce--eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 208 SEGRYTCKATNEAG---TA--ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 208 d~G~Y~C~a~n~~g---~~--~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
|+|.|.|.+.|..+ .. .....|.|........+
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~------------------------------------------ 120 (238)
T 1bec_A 83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTP------------------------------------------ 120 (238)
T ss_dssp GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBC------------------------------------------
T ss_pred cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCC------------------------------------------
Confidence 99999999998742 11 12245666543100000
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCc-eeeEEeecCeecccccee----EEE
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPD-IQVKWLKKGKEIKESARH----IIT 355 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~-~~i~W~~~g~~l~~~~~~----~~~ 355 (803)
+.+....+....+..|+.+.|.|.+ + .|. +.+.|+++|.++..+... ...
T Consensus 121 -----------------------P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~ 177 (238)
T 1bec_A 121 -----------------------PKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKE 177 (238)
T ss_dssp -----------------------CEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEE
T ss_pred -----------------------CceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeC
Confidence 0011111222234469999999999 5 464 599999999998754322 223
Q ss_pred EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeee
Q psy2776 356 SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 356 ~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~ 391 (803)
.++.. ..|.|......| .|.|+|.+.|......+.|
T Consensus 178 ~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~~~~ 217 (238)
T 1bec_A 178 SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKW 217 (238)
T ss_dssp ETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCTTCCC
T ss_pred CCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCCCcEe
Confidence 34432 234444444434 6789999999765444444
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=113.70 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCC---CceEEeeCCeecc---CCCCeEEEee------CceEEEEEecCCCCC
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPLL---SSPKKREIFD------GENIILELKEADSET 739 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~~~~l~---~~~~~~~~~~------~~~~~L~i~~v~~~~ 739 (803)
.|.|+..+....+.+|++++|.|.+.|.|. |.+.|+|++.... ...++.+... .....|.|.++ +.+
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~ 82 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA-QPA 82 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSC-CGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecC-CCc
Confidence 577888888899999999999999999998 9999999873221 1234443321 12578999999 799
Q ss_pred CceeEEEEEEccCcceeeeEEEEEE
Q psy2776 740 DAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|+|.|+|.|.|.+|.+++++.|.|.
T Consensus 83 D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 83 FTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999999999999984
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=110.00 Aligned_cols=85 Identities=31% Similarity=0.392 Sum_probs=78.0
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 93 (99)
T 3puc_A 14 QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCK 93 (99)
T ss_dssp CCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 35788999999999999999999999999999998888888887777789999999999999999999999999999999
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
|.|..
T Consensus 94 l~V~~ 98 (99)
T 3puc_A 94 LTIKA 98 (99)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98864
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=130.05 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=53.4
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--e---c-------------cceeEEEe---cCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--L---I-------------KGRNITYE---NNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~---~-------------~~~~~~~~---~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|++++|.|.+. .+.+.+.|+|... . + ...++... .+...|.|.+++
T Consensus 6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 84 (252)
T 1oga_E 6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ 84 (252)
T ss_dssp EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence 44556778899999999999995 4578899998531 1 0 01233332 234689999999
Q ss_pred CCcceEEEEEEEcC
Q psy2776 206 ESSEGRYTCKATNE 219 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~ 219 (803)
.+|+|.|.|.+.|.
T Consensus 85 ~~D~G~Y~C~~~~~ 98 (252)
T 1oga_E 85 KNPTAFYLCASSSR 98 (252)
T ss_dssp SCCCEEEEEEEESS
T ss_pred hhhCEEEEEEEecC
Confidence 99999999999986
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=109.51 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=78.5
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.|.|...+....+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a--- 82 (95)
T 2k1m_A 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREV-GPADQGSYAVIA--- 82 (95)
T ss_dssp CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSC-CTTCCSEEEEEE---
T ss_pred CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCC-CcccCEEEEEEE---
Confidence 5778888888999999999999999 78999999999999999888999888888889999999 799999999999
Q ss_pred CcceeeeEEEEEE
Q psy2776 752 LGSATHGARVTVD 764 (803)
Q Consensus 752 ~G~~~~~~~l~V~ 764 (803)
|..+.++.|.|.
T Consensus 83 -g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 -GSSKVKFDLKVI 94 (95)
T ss_dssp -TTEEEEEEEEEE
T ss_pred -CCceEEEEEEEe
Confidence 667778888874
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=112.38 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=69.4
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE--ec---CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF--ID---EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~--~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
..|+.+.|.|.+.|.|.|.++|+|+|..+..+.+.... .. ...++|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 93 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 35788999999999999999999999999887653222 11 12356999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|...|
T Consensus 94 l~V~~~P 100 (103)
T 1wwb_X 94 AHFMGWP 100 (103)
T ss_dssp ECCSCCC
T ss_pred EEECCCC
Confidence 9998765
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-12 Score=111.86 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=81.1
Q ss_pred CCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 667 ~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.....||.|...+....+.+|+++.|.|.+.+. |.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|
T Consensus 14 ~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C 90 (113)
T 2edh_A 14 TVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGL-VAEDAGEYLC 90 (113)
T ss_dssp CCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSC-CSTTCEEEEE
T ss_pred EEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCC-ChhhCEEEEE
Confidence 333446889888888999999999999999775 7899999999999889999988888889999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEEe
Q psy2776 747 VATNELGSATHGARVTVDV 765 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~~ 765 (803)
.| |..+.++.|.|..
T Consensus 91 ~a----~~~~~~~~l~V~~ 105 (113)
T 2edh_A 91 MC----GKERTSAMLTVRA 105 (113)
T ss_dssp EE----TTEEEEEEEEECC
T ss_pred Ee----CCCCEEEEEEEeC
Confidence 99 7788889899863
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=130.50 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=108.7
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--e---ee---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--A---EI---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~---~i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.. ...+.|+|.. . .+ . ...|+.+..+ .+...|.|.+++.
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 111 (256)
T 3sob_H 32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA 111 (256)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence 35688999999999997633 4679998742 1 11 0 0134544332 2456799999999
Q ss_pred CcCeEEEEEEEcCCC-------C----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEE
Q psy2776 574 ADTSTYTVTATNAAG-------S----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-------~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (803)
+|+|.|.|.+.+..+ . ......|.|...
T Consensus 112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------- 150 (256)
T 3sob_H 112 EDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSA----------------------------------------- 150 (256)
T ss_dssp GGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSS-----------------------------------------
T ss_pred ccCEEEEEEEecCCCccccccccceeEECCCEEEEEecC-----------------------------------------
Confidence 999999999987532 1 111223444221
Q ss_pred EecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCC--
Q psy2776 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPK-- 718 (803)
Q Consensus 643 a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~-- 718 (803)
+..+|.+........+.+|+.++|.|.+.+. | .+.+.| ++..+..+..
T Consensus 151 --------------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~ 202 (256)
T 3sob_H 151 --------------------------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTF 202 (256)
T ss_dssp --------------------------CCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEEC
T ss_pred --------------------------CCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeC
Confidence 1225555543334456789999999999885 5 346999 5544432110
Q ss_pred -eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 719 -KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 719 -~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.....++. .+.|.|... ..+| |.|+|.|.|..+.......|.+
T Consensus 203 ~~~~~~~g~~~~~s~L~i~~~-~~~d-~~ytC~v~~~~~~~~~~~~~~~ 249 (256)
T 3sob_H 203 PAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKKVEP 249 (256)
T ss_dssp CCEECTTSCEEEEEEEEEEGG-GTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CceeCCCCCEEEEEEEEECHH-HcCC-ceEEEEEEeCCCCcceEEEecc
Confidence 11111121 346889988 6788 9999999999988776665554
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=115.99 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=73.2
Q ss_pred CCeeEecc----ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeE-EEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERF----EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~----~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.|...+ ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++. .........|.|.++ +.+|+|.|+|
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C 82 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV-VPSDKGNYTC 82 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSC-CGGGCEEEEE
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccC-CcCCCEEEEE
Confidence 56666544 35678899999999999999999999999999987654421 122233347999999 7999999999
Q ss_pred EEEccCcceeeeEEEEE
Q psy2776 747 VATNELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V 763 (803)
.|.|..|..+..+.|.|
T Consensus 83 ~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 83 VVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEeCCCEEEEEEEEEE
Confidence 99999999998888876
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-12 Score=125.67 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=107.7
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +...+.|+|.. . .+ . ...|+.+..+ .....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 4668899999999999763 34689999742 1 11 0 0134444332 2457899999999
Q ss_pred CcCeEEEEEEEcCCCC-------e--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEe
Q psy2776 574 ADTSTYTVTATNAAGS-------T--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~-------~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 644 (803)
+|+|.|.|.+.+..+. . .....|.|..
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~-------------------------------------------- 124 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS-------------------------------------------- 124 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECC--------------------------------------------
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeecc--------------------------------------------
Confidence 9999999999764210 0 0111233321
Q ss_pred cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCC---Ce
Q psy2776 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSP---KK 719 (803)
Q Consensus 645 n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~---~~ 719 (803)
....+|.+........+.+|+.++|.|.+.|. | .+.+.| ++..+..+. ..
T Consensus 125 -----------------------~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~ 179 (226)
T 3mlr_H 125 -----------------------GTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPA 179 (226)
T ss_dssp -----------------------CCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCC
T ss_pred -----------------------CCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCc
Confidence 11225666544444455689999999999885 4 357999 443332110 00
Q ss_pred EEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 720 REIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 720 ~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
....++. .+.|.|... ..+| |.|+|.|.|..+.......
T Consensus 180 ~~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~ 221 (226)
T 3mlr_H 180 VLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKK 221 (226)
T ss_dssp EECTTSCEEEEEEEEEEGG-GTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred EECCCCCEEEEEEEEECHh-HcCC-CeEEEEEEECCCCcCeEEE
Confidence 1111121 346889988 5678 9999999999988654443
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=107.58 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=70.2
Q ss_pred ccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 515 ~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
+....+.+|+.+.|.|.+.+ |++.+.|+|+|..|..+.++.+..++....|.|.++..+|+|.|+|.|.|. ..++
T Consensus 12 ~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa 86 (93)
T 1waa_A 12 LYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----KSAA 86 (93)
T ss_dssp CCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----EEEE
T ss_pred CcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----cEEE
Confidence 34688999999999999986 557899999999999888888887777789999999999999999999874 4677
Q ss_pred EEEEee
Q psy2776 595 SLQVLG 600 (803)
Q Consensus 595 ~l~V~~ 600 (803)
.|.|..
T Consensus 87 ~L~V~~ 92 (93)
T 1waa_A 87 NLKVKE 92 (93)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 777754
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=112.22 Aligned_cols=89 Identities=25% Similarity=0.357 Sum_probs=81.0
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.+ +.|++++..+..+.++.+..++....|.|.++ +.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~--- 81 (103)
T 2e7b_A 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNL-RPQDSGRYSCS--- 81 (103)
T ss_dssp CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSC-CTTTCCCEEEE---
T ss_pred CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccC-CcccCEEEEEE---
Confidence 47888888888999999999999999999999 99999999998888999988888899999999 79999999998
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
+|..+..+.|.|..
T Consensus 82 -~g~~~~~~~l~V~~ 95 (103)
T 2e7b_A 82 -FGDQTTSATLTVTA 95 (103)
T ss_dssp -CSSCBCCBCEEEEC
T ss_pred -ECCcEEEEEEEEEe
Confidence 67788888888864
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=114.69 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=70.9
Q ss_pred ecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC-------CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-------ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~-------~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
.+..+.|.|.+.|+|.|.++|+|||.+|..+.+..+.... ..++|.|.+++..|+|.|+|+|.|..|....++
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~ 93 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence 5678999999999999999999999999987765544321 257899999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|...|
T Consensus 94 ~l~v~~~P 101 (126)
T 1he7_A 94 MAAFMDNP 101 (126)
T ss_dssp EECCCSCT
T ss_pred EEEEEcCC
Confidence 99998876
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=128.32 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=49.1
Q ss_pred EEeecceeEEEEEEcCc-CC-CeeEEee-CCeeecCCCcEEEEecCC----eEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 519 RLSVKSQWKVEVKYFGF-PR-PEISWMK-NGAEITDSKACRIFIDEE----TSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~-p~-~~v~W~~-~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
.+..|+.+.|.|.+.|. |. +.+.|++ +|..+..+....+...++ .+.|.|.+... | |.|+|.|.|..+..
T Consensus 141 ~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 141 ETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp HHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred hhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 34568999999999987 75 5999999 887775432111111112 25788887775 4 99999999987653
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=110.74 Aligned_cols=85 Identities=21% Similarity=0.443 Sum_probs=73.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE-ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+..+. ...+...|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 93 (100)
T 2kdg_A 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93 (100)
T ss_dssp CEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEE
Confidence 577899999999999999999999999999999877544333 3444579999999999999999999999999999999
Q ss_pred EEEeee
Q psy2776 596 LQVLGY 601 (803)
Q Consensus 596 l~V~~~ 601 (803)
|.|...
T Consensus 94 l~V~~~ 99 (100)
T 2kdg_A 94 LDVLAK 99 (100)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 998764
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=110.85 Aligned_cols=92 Identities=26% Similarity=0.447 Sum_probs=78.7
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++... ...+|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~ 84 (100)
T 2edj_A 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-EQGTLQIKNLRISDTGTYTCVATSS 84 (100)
T ss_dssp CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC-TTCCEEEESCCTTTCCEEEEEEECS
T ss_pred CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc-CCCEEEEccCCcccCEEEEEEEEcC
Confidence 5678888888889999999999999999999999999999987762 233332 3357999999999999999999999
Q ss_pred CcCeeeEEEEEEeee
Q psy2776 220 AGTAETSCTLLVQGK 234 (803)
Q Consensus 220 ~g~~~~s~~l~V~~~ 234 (803)
.|....++.|.|.+.
T Consensus 85 ~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 85 SGETSWSAVLDVTES 99 (100)
T ss_dssp SCCCBCCEEEEEESC
T ss_pred CCCEEEEEEEEEecC
Confidence 999988899988764
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=113.27 Aligned_cols=95 Identities=23% Similarity=0.396 Sum_probs=80.9
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEec---CeeEEEEecCCCCcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYEN---NVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.... +..+|.|.+++.+|+|.|+|.|
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 92 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA 92 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence 4578888889999999999999999999999999999999988763 2333322 2348999999999999999999
Q ss_pred EcCCcCeeeEEEEEEeeeec
Q psy2776 217 TNEAGTAETSCTLLVQGKEI 236 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~ 236 (803)
.|..|....++.|.|...|.
T Consensus 93 ~N~~G~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 93 VNEAGVTTCNTRLDVTARPN 112 (116)
T ss_dssp EETTEEEEEEEEEEEECCSC
T ss_pred EcCCCeEEEEEEEEEeCCCC
Confidence 99999998899999987753
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=109.16 Aligned_cols=91 Identities=25% Similarity=0.492 Sum_probs=77.0
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEE--EecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NIT--YENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+. ..+...+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 83 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence 4677777788889999999999999999999999999999887643 222 233445899999999999999999999
Q ss_pred CCcCeeeEEEEEEee
Q psy2776 219 EAGTAETSCTLLVQG 233 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~ 233 (803)
..|....++.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 84 EYGARQCEARLEVRG 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCceeEEEEEEEEC
Confidence 999998888888864
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=113.02 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=77.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 22 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 101 (106)
T 1nct_A 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT 101 (106)
T ss_dssp CCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEE
T ss_pred CCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEE
Confidence 46788999999999999999999999999999998888888877777889999999999999999999999999999999
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 102 l~V~ 105 (106)
T 1nct_A 102 LTIQ 105 (106)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9885
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=109.16 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=77.4
Q ss_pred CCCCeeEeccce-eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..+|.|+..+.. ..+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+ .++.+..++....|.|.++ +.+|+|.|+|.
T Consensus 13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~ 90 (104)
T 1pd6_A 13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQC-SLADDAAYQCV 90 (104)
T ss_dssp STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSC-SSSSCEEEEEE
T ss_pred cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCC-CcccCEEEEEE
Confidence 458888888877 789999999999999 7899999999999999887 7888888888889999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|.| ...++.|.|+
T Consensus 91 a~~----~~~~~~l~V~ 103 (104)
T 1pd6_A 91 VGG----EKCSTELFVK 103 (104)
T ss_dssp ETT----EEECCEEEEE
T ss_pred ECC----CcEEEEEEEe
Confidence 944 5566777774
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=9.7e-13 Score=114.09 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=68.3
Q ss_pred eeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCc
Q psy2776 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575 (803)
Q Consensus 496 ~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~d 575 (803)
.+.+..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....+..+. .....|.|.++..+|
T Consensus 4 ~v~~~~~P~~~~~------~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D 75 (108)
T 3kvq_A 4 TVLERVAPTITGN------LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKED 75 (108)
T ss_dssp -------CCCBSC------CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE--TTTTEEEECSCCGGG
T ss_pred eECccCCCceecC------CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe--CCCcEEEEeecCccc
Confidence 4445556654322 23678899999999999999999999999999988776655443 345689999999999
Q ss_pred CeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 576 TSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+|.|+|.|.|..|....++.|.|..+|
T Consensus 76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 76 EGLYTCQACSVLGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp CEEEEEEEC----CEEEEEEEEEEC--
T ss_pred CEEEEEEEEeCCCceEEEEEEEEeCCC
Confidence 999999999999999999999998765
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-12 Score=127.23 Aligned_cols=138 Identities=13% Similarity=0.191 Sum_probs=84.0
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee--------e-eeecccCCCCceeEEeeeccCcccCCchhhhhccccccccc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT--------A-ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSY 490 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~--------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (803)
.+...|+|.+++.+|+|.|.|.+.+..+. . ....
T Consensus 83 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~------------------------------------- 125 (239)
T 3tv3_H 83 KNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLW------------------------------------- 125 (239)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEE-------------------------------------
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeee-------------------------------------
Confidence 45678999999999999999999865321 0 0000
Q ss_pred ccceeeeccC-CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC----e
Q psy2776 491 KTRTTNLQIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE----T 563 (803)
Q Consensus 491 ~~~~~~l~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~----~ 563 (803)
.....|.|. .++..|.+..... ...+..|+.+.|.|.+.+. |.+ .+.|+++|..+...........++ .
T Consensus 126 -~~~t~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~ 201 (239)
T 3tv3_H 126 -GRGTLVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS 201 (239)
T ss_dssp -CCCEEEEECCCCCBCCEEEEECC---CCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEE
T ss_pred -CCCcEEeeccCCCcCCEEEEECC---ChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEE
Confidence 002233343 2333333322111 2234569999999999885 434 578999986432111001111111 2
Q ss_pred EEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 564 STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 564 ~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.|.|.+....| |.|+|.|.|..+.......|.+.
T Consensus 202 s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 236 (239)
T 3tv3_H 202 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 236 (239)
T ss_dssp EEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence 578899988888 99999999998877776666553
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-12 Score=108.28 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC----------CeEEEeeCceEEEEEecCCCCCCc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----------KKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~----------~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
+|.|...+.+..+.+|+++.|.|.+.+ .|.+.|+|||.+|..+. ++.+..++....|.|.++ +.+|+
T Consensus 8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v-~~~D~ 84 (112)
T 2e6q_A 8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAV-KHQDS 84 (112)
T ss_dssp CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESC-CSTTC
T ss_pred CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCC-CHHHC
Confidence 688999999999999999999999987 77899999999999887 888888888889999999 79999
Q ss_pred eeEEEEEEccCcceeeeEEEEEEe
Q psy2776 742 GDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 742 G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|.|+|...+ ....++.|.|..
T Consensus 85 G~Y~~~~~~---~~~ssA~L~V~~ 105 (112)
T 2e6q_A 85 GALVGFSCP---GVQDSAALTIQE 105 (112)
T ss_dssp SEEEEEEET---TEEEEEEEEEEC
T ss_pred ccEEEEEEC---CeeEEEEEEEeC
Confidence 999774443 345688999964
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.35 E-value=8.7e-12 Score=124.74 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=81.4
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeee----eecccCCCCceeEEeeeccCcccCCchhhhhccccccccccccee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAE----TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (803)
.+...|+|.+++.+|+|.|.|.+.+..+... ... + ...
T Consensus 80 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~---~-----------------------------------~~~ 121 (232)
T 3qhz_H 80 KSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLW---G-----------------------------------RGT 121 (232)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEE---C-----------------------------------CCE
T ss_pred CCEEEEEECcCChhhCEEEEEEEeeccCccccccceee---C-----------------------------------CCe
Confidence 3567899999999999999999987632110 000 0 022
Q ss_pred eeccC-CCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCC----eEEEEE
Q psy2776 496 NLQIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEE----TSTIAI 568 (803)
Q Consensus 496 ~l~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i 568 (803)
.|.|. .++..|.+..... ...+..|+.+.|.|.+.+.++ ..+.|+++|..+...........++ .+.|.|
T Consensus 122 ~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i 198 (232)
T 3qhz_H 122 LVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV 198 (232)
T ss_dssp EEEECSSCCBCCEEEEECC----------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEecc---cccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEE
Confidence 33333 2222332221111 234567999999999998654 3577999986432110000111111 257889
Q ss_pred eeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 569 ~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
.+....| |.|+|.|.|..+.......|.+.
T Consensus 199 ~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 199 PSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp EGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred chhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 9998889 99999999998887777766553
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=114.58 Aligned_cols=94 Identities=26% Similarity=0.431 Sum_probs=73.5
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC-----CeEEEeeCceEEEEEe--cCCCCCCce
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-----KKREIFDGENIILELK--EADSETDAG 742 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~-----~~~~~~~~~~~~L~i~--~v~~~~D~G 742 (803)
..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+.... +.....++....+.|. ++ +.+|+|
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v-~~~D~G 85 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK-SRPDEG 85 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTT-BCSSCE
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCC-CcCcCE
Confidence 348899988888999999999999999999999999999999987543 2233334443343333 66 689999
Q ss_pred eEEEEEEccCcce-eeeEEEEEE
Q psy2776 743 DYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 743 ~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
.|+|.|.|.+|.. +..+.|.|.
T Consensus 86 ~Y~C~a~N~~G~~~s~~~~l~~~ 108 (117)
T 2v9t_A 86 VYVCVARNYLGEAVSHDASLEVA 108 (117)
T ss_dssp EEEEEEEETTEEEECCCEEEEEC
T ss_pred EEEEEEEeCccceEeeeEEEEhh
Confidence 9999999999998 455666664
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-10 Score=118.80 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=57.1
Q ss_pred ccCcCeeeecCCcEEEEEEECcc-------CCCeeEEEEcCeeccceeEEE-ecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGV-------PTPDIKWYKDDSLIKGRNITY-ENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~-------p~p~i~W~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..|.+..+..|+++.|.|.+.+. |.|.|.|++++..+...++.. .+....|.|.++...| |.|+|.|.+.
T Consensus 9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~ 86 (303)
T 1i1r_A 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTF 86 (303)
T ss_dssp EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccC
Confidence 34677889999999999999864 778999999999887554333 3345689999999885 9999999874
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=113.87 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=78.6
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEE-eeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.++.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.++.+. .++....|.|.++ +.+|+|.|+|.
T Consensus 12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~-- 88 (115)
T 2cr6_A 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFE-- 88 (115)
T ss_dssp SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSC-CTTTCEEEEEE--
T ss_pred CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCC-ChhhCEEEEEE--
Confidence 4678888888999999999999999999999999999999999888877665 3466678999999 79999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
+|....++.|.|..
T Consensus 89 --~g~~~~~~~L~V~~ 102 (115)
T 2cr6_A 89 --AGDQRASAALRVTE 102 (115)
T ss_dssp --ETTEECCEEEEEEC
T ss_pred --ECCeeEEEEEEEEC
Confidence 57778888889863
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=106.62 Aligned_cols=76 Identities=9% Similarity=0.169 Sum_probs=65.4
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+.+|+.+.|.|.+.+ |.+.++|+|||..|..+.++.+..++...+|.|.++..+|+|.|+|.|.|. +.++.|.
T Consensus 16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~lt 90 (91)
T 2lvc_A 16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVT 90 (91)
T ss_dssp EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEE
T ss_pred EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEE
Confidence 34567999999999966 889999999999999999999888888889999999999999999999664 5556655
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 91 V 91 (91)
T 2lvc_A 91 I 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-12 Score=105.20 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
++.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....+ ..|.|.++ +.+|+|.|+|.|.|.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v-~~~d~G~Y~C~a~n~ 72 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYV-DLEHQGTYWCHVYND 72 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------SEEEESSC-CGGGCEEEEEEEECS
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------CeEEECCC-CHHhCEEEEEEEEcC
Confidence 56777788888999999999999999999999999999998865532 37999999 789999999999999
Q ss_pred Cccee-eeEEEEE
Q psy2776 752 LGSAT-HGARVTV 763 (803)
Q Consensus 752 ~G~~~-~~~~l~V 763 (803)
.|... ..+.|.|
T Consensus 73 ~g~~~s~~~~l~V 85 (91)
T 3bfo_A 73 RDSQDSKKVEIII 85 (91)
T ss_dssp SCEEECCCEEEEE
T ss_pred CCCEEeeeEEEEE
Confidence 99754 5566666
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=108.95 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=77.8
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|++++|.|.+.+. |.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n 83 (108)
T 2dm7_A 7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDL-SVADAGEYSCMCGQ 83 (108)
T ss_dssp CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSC-CTTTCSEEEEEETT
T ss_pred CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCC-CcccCEEEEEEEcC
Confidence 48888888888999999999999999765 6899999999999888999888888899999999 79999999999965
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
....+.|.|..
T Consensus 84 ----~~~~~~l~V~~ 94 (108)
T 2dm7_A 84 ----ERTSATLTVRA 94 (108)
T ss_dssp ----EEEEEECEEEC
T ss_pred ----CEEEEEEEEec
Confidence 56777788864
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=111.95 Aligned_cols=98 Identities=18% Similarity=0.350 Sum_probs=76.8
Q ss_pred eeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC----CeEEEEEeee
Q psy2776 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE----ETSTIAIYSV 571 (803)
Q Consensus 496 ~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~----~~~~L~i~~v 571 (803)
.|.|..||.+.... ... ..+...|.|.+.|.|.|.+.|+|+|..+..+.+..+.... ..+.|.|.++
T Consensus 2 ~L~V~~pP~i~~~~-------~~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~ 72 (118)
T 1wwc_A 2 ALTVYYPPRVVSLE-------EPE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 72 (118)
T ss_dssp --CCCCCCCCCCCC-------CCC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESC
T ss_pred EEEEecCCceeccC-------CCe--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCC
Confidence 46677777753321 111 2256788999999999999999999999887665554322 3578999999
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 73 ~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 73 THYNNGNYTLIAKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred ChhcCEEEEEEEECCCCeEeeEEEEEEccCC
Confidence 9999999999999999999999999988776
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-12 Score=112.30 Aligned_cols=84 Identities=20% Similarity=0.343 Sum_probs=72.1
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC-CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD-SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~-~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.. ..++.+.. ..+|.|.++..+|+|.|+|.|.|..|....++
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 92 (118)
T 2eo9_A 16 VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE---NGVLQIRYAKLGDTGRYTCIASTPSGEATWSA 92 (118)
T ss_dssp CCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE---TTEEEEESCCGGGCCCEEEEEECSSCEEEEEC
T ss_pred CCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc---CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEE
Confidence 357789999999999999999999999999998865 34554433 23899999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..++
T Consensus 93 ~l~V~~~~ 100 (118)
T 2eo9_A 93 YIEVQEFG 100 (118)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99987754
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-12 Score=109.41 Aligned_cols=95 Identities=27% Similarity=0.427 Sum_probs=80.1
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEe---cCeeEEEEecCCCCcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYE---NNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. .++... ++...|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 85 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 85 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence 4678888888889999999999999999999999999999988763 223222 23458999999999999999999
Q ss_pred EcCCcCeeeEEEEEEeeeec
Q psy2776 217 TNEAGTAETSCTLLVQGKEI 236 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~ 236 (803)
.|..|....++.|.|...+.
T Consensus 86 ~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 86 ANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp ECTTCCEEECCCEEEECCSC
T ss_pred EECCCeEEEEEEEEEECCCC
Confidence 99999998888999987653
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.9e-12 Score=125.86 Aligned_cols=136 Identities=10% Similarity=0.154 Sum_probs=81.4
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCce--------------------eeeeecccCCCCceeEEeeeccCcccCCchhh
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAG--------------------TAETRTMWPGLPLSIVVSLRKADTRVKPPMKR 479 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g--------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 479 (803)
.+..+|+|.+++.+|+|.|.|.+.+..+ .....
T Consensus 75 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 127 (248)
T 3u2s_H 75 KDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWG--------------------------- 127 (248)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEEC---------------------------
T ss_pred CCEEEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeC---------------------------
Confidence 4567899999999999999999987421 00000
Q ss_pred hhcccccccccccceeeeccC-CCCCCccceeeeccccceEEeecceeEEEEEEcCc-C-CCeeEEeeCCeeecCCCcEE
Q psy2776 480 VLQKLAVPFSYKTRTTNLQIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P-RPEISWMKNGAEITDSKACR 556 (803)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p-~~~v~W~~~g~~i~~~~~~~ 556 (803)
....|.|. .++..|.+..... ...+..|+.+.|.|.+.+. | +..+.|+++|..+.......
T Consensus 128 -------------~~t~l~V~~~~~~~P~v~~~~~---~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~ 191 (248)
T 3u2s_H 128 -------------KGTTVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA 191 (248)
T ss_dssp -------------CCEEEEECSCCCBCCEEEEECC---C------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC
T ss_pred -------------CCEEEEEcccCCCCCEEEEeCC---CccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCc
Confidence 12334443 3333333322211 2234569999999999884 4 35789999986432110000
Q ss_pred EEecCC----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 557 IFIDEE----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 557 ~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
....++ .+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 192 ~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 237 (248)
T 3u2s_H 192 VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 237 (248)
T ss_dssp EECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred eECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence 111111 2578888888888 99999999998877766666554
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=107.44 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=74.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCe-ecc-------CCCCeEEEee-CceEEEEEecCCCCCCce
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-PLL-------SSPKKREIFD-GENIILELKEADSETDAG 742 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~-~l~-------~~~~~~~~~~-~~~~~L~i~~v~~~~D~G 742 (803)
+|.|+..+....+.+|++++|.|.+.+.|.+.+.|++++. .+. .+.++.+... .....|.|.++ +.+|+|
T Consensus 6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v-~~~D~G 84 (108)
T 3m45_A 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV-SLSDEG 84 (108)
T ss_dssp --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSC-CGGGCE
T ss_pred CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCC-ChhHCe
Confidence 6677788888999999999999999999999999999765 221 3346655433 34778999999 799999
Q ss_pred eEEEEEEccCcceeeeEEEEEEe
Q psy2776 743 DYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|+|.|.| .|..+..+.|.|.+
T Consensus 85 ~Y~C~~~n-~~~~~~~~~L~V~~ 106 (108)
T 3m45_A 85 QYTCSLFT-MPVKTSKAYLTVLG 106 (108)
T ss_dssp EEEEEECS-SSCEEEEEEEEEEC
T ss_pred EEEEEEEc-CCCcEEEEEEEEEc
Confidence 99999999 99999999998854
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-12 Score=106.65 Aligned_cols=88 Identities=15% Similarity=0.255 Sum_probs=74.8
Q ss_pred CCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 141 ~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
...+|.|...+....+.+|+.+.|.|.+.|.| |.+.|+|++..+.. .++... ...|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~ 82 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--GEEVEVRDSIPADSGLYACVTSSP 82 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--SSEEEESSCCGGGSEEEEEEEEET
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--CCEEEECCCChHHCEEEEEEeccC
Confidence 35678888888889999999999999999987 79999999987763 233333 468999999999999999999999
Q ss_pred CcCeeeEEEEEE
Q psy2776 220 AGTAETSCTLLV 231 (803)
Q Consensus 220 ~g~~~~s~~l~V 231 (803)
.|....++.|.|
T Consensus 83 ~g~~~~~~~l~V 94 (95)
T 2ckn_A 83 SGSDTTYFSVNV 94 (95)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCcEEEEEEEEE
Confidence 999888888776
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-12 Score=110.56 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=66.0
Q ss_pred CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC----ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 688 ~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+...|.|.+.|.|.|.+.|+|+|..+..+.+..+.... ....|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~~~l~v 99 (118)
T 1wwc_A 21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP-THYNNGNYTLIAKNPLGTANQTINGHF 99 (118)
T ss_dssp CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESC-CGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCC-ChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence 67789999999999999999999999887766554432 4568999999 789999999999999999999988877
Q ss_pred E
Q psy2776 764 D 764 (803)
Q Consensus 764 ~ 764 (803)
.
T Consensus 100 ~ 100 (118)
T 1wwc_A 100 L 100 (118)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=108.94 Aligned_cols=87 Identities=28% Similarity=0.450 Sum_probs=72.1
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.... ...|.|.++ +.+|+|.|+|.|
T Consensus 7 ~~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------~~~L~i~~v-~~~d~G~Y~C~a 76 (96)
T 2ens_A 7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEI-GPQDQGTYSCVA 76 (96)
T ss_dssp CCCSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------CSEEEEESC-CTTTCEEEECEE
T ss_pred CCCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------CCEEEECCC-CcccCEEEEEEE
Confidence 3447888888888889999999999999999999999999999876542 237999999 799999999999
Q ss_pred EccCcceeeeEEEEEEe
Q psy2776 749 TNELGSATHGARVTVDV 765 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~ 765 (803)
.|..|....+..+.|.|
T Consensus 77 ~n~~~~~~~s~~~~v~V 93 (96)
T 2ens_A 77 THSSHGPQESRAVSISI 93 (96)
T ss_dssp CCSSCCCEECCCEEEEE
T ss_pred EeCCCCcEEEEEEEEEE
Confidence 99877665555555544
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-11 Score=105.98 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=73.8
Q ss_pred CCeeEeccce---eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEE---KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~---~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+|.++..+.. ..+.+|+++.|.|.+. .|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a 87 (113)
T 2cpc_A 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAV-QLEDSGEYLCEI 87 (113)
T ss_dssp CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSC-CTTTCEEEEEES
T ss_pred CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCC-CcccCEEEEEEE
Confidence 4445544444 6788999999999995 8999999999999999888988888887789999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.| .+..+.|.|.
T Consensus 88 ~n----~~~~~~l~V~ 99 (113)
T 2cpc_A 88 DD----ESASFTVTVT 99 (113)
T ss_dssp SS----CEEEEEEEEE
T ss_pred ec----CcEEEEEEEe
Confidence 99 5667777775
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=113.31 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=77.7
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+... .+...|.|.++..+|+|.|+|.|.|..|....++
T Consensus 49 ~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 128 (154)
T 1fhg_A 49 LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128 (154)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEE
Confidence 467889999999999999999999999999999988877777654 3457999999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 129 ~l~V~~~p 136 (154)
T 1fhg_A 129 ELLVETMG 136 (154)
T ss_dssp EEEEECC-
T ss_pred EEEEeCcC
Confidence 99998876
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=110.29 Aligned_cols=87 Identities=25% Similarity=0.439 Sum_probs=75.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|++..+....+..+... .+..+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 17 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 96 (110)
T 2dm3_A 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSL 96 (110)
T ss_dssp CEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECC
T ss_pred CcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEE
Confidence 467889999999999999999999999999998887665554433 3457999999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 97 ~l~V~~~p 104 (110)
T 2dm3_A 97 ELVVAAKE 104 (110)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99998765
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-12 Score=109.17 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=68.3
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
+....+.+|+.+.|.|.+.|.| |.+.|+|++..+....++.+. + ..|.|.++ +.+|+|.|+|.|.|.+|..+..
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~v-~~~D~G~Y~C~a~n~~g~~~~~ 83 (99)
T 2cr3_A 10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT--G--EEVEVQDS-VPADSGLYACVTSSPSGSDTTY 83 (99)
T ss_dssp EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC--S--SEEEETTC-CTTTCEEEEEEEEETTEEEEEE
T ss_pred CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE--C--CEEEEccC-CHHHCEEEEEEEEeCCceEEEE
Confidence 3456788999999999999987 799999999998777766543 3 37999999 7999999999999999998888
Q ss_pred EEEEEE
Q psy2776 759 ARVTVD 764 (803)
Q Consensus 759 ~~l~V~ 764 (803)
+.|.|.
T Consensus 84 ~~l~V~ 89 (99)
T 2cr3_A 84 FSVNVS 89 (99)
T ss_dssp EEECBC
T ss_pred EEEEEe
Confidence 877774
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=104.76 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=71.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.+ |.+.+.|+|+|..+..+. ++.+..++....|.|.++..+|+|.|+|.|.| .+.+
T Consensus 15 ~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~ 89 (103)
T 1x44_A 15 EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSS 89 (103)
T ss_dssp CCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEE
T ss_pred CCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEE
Confidence 3578899999999999987 779999999999998877 66877777778999999999999999999988 5777
Q ss_pred EEEEEeeeE
Q psy2776 594 LSLQVLGYI 602 (803)
Q Consensus 594 ~~l~V~~~p 602 (803)
+.|.|..+|
T Consensus 90 ~~l~V~~~p 98 (103)
T 1x44_A 90 AKLSVDLKS 98 (103)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 888887755
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=130.84 Aligned_cols=70 Identities=14% Similarity=0.294 Sum_probs=51.3
Q ss_pred eecCCcEEEEEEECcc-CCC---eeEEEEcCeecccee----EEEe----cCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 156 AGFQSSVTLECVVSGV-PTP---DIKWYKDDSLIKGRN----ITYE----NNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 156 v~~G~~~~L~C~~~g~-p~p---~i~W~~~~~~~~~~~----~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
+..|+.++|.|.+.|. |.| .|.|++++..+.... .... .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999986 333 699999986553210 0011 123479999999999999999999987754
Q ss_pred ee
Q psy2776 224 ET 225 (803)
Q Consensus 224 ~~ 225 (803)
..
T Consensus 260 ~~ 261 (376)
T 2aty_A 260 PI 261 (376)
T ss_pred ce
Confidence 33
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.8e-12 Score=106.71 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=73.0
Q ss_pred cceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+++.|.|.+.+.|. +.+.|+|+|..+..+.++.+..++...+|.|.++..+|+|.|+|.|. ....++
T Consensus 16 ~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~----~~~~~a 91 (104)
T 2eny_A 16 KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR----GLTSKA 91 (104)
T ss_dssp CCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET----TEEEEE
T ss_pred CCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC----CeeEEE
Confidence 4678999999999999998875 48999999999998888888877778899999999999999999984 456888
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 92 ~L~V~~~p 99 (104)
T 2eny_A 92 SLIVRERS 99 (104)
T ss_dssp CEEEECCC
T ss_pred EEEEeCCC
Confidence 89998766
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.4e-13 Score=129.96 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=106.3
Q ss_pred eccCcCeeeecCCcEEEEEEECccCC---CeeEEEEcCeeccceeE-----EEec---CeeEEEEecCCCCcceEEEEEE
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWYKDDSLIKGRNI-----TYEN---NVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~~~~~~~~~~~~-----~~~~---~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
...+....+.+|+.++|.|.+.+.++ +.|.| ++..+..... ...+ ....|.|.++..+|+|.|+|.+
T Consensus 8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~ 85 (214)
T 1ow0_A 8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA 85 (214)
T ss_dssp EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence 33456667789999999999998754 68999 4433321100 0001 2357889999999999999999
Q ss_pred EcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 217 TNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.|..+.......+.+....
T Consensus 86 ~~~~~~~~~~~~i~~~~~~------------------------------------------------------------- 104 (214)
T 1ow0_A 86 AYPESKTPLTATLSKSGNT------------------------------------------------------------- 104 (214)
T ss_dssp CCSSCSSCEEEEEECCSSC-------------------------------------------------------------
T ss_pred ecCCCCCceeEeeccCCCC-------------------------------------------------------------
Confidence 9987654433333220000
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEe-c-CCc-eeeEEeecCeeccccce----eEEE---EcCcee---EE
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPD-IQVKWLKKGKEIKESAR----HIIT---SRGTQR---KL 363 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~-~~i~W~~~g~~l~~~~~----~~~~---~~~~~~---~l 363 (803)
.+|...+. .+....+..|+.+.|.|.+ + .|. +.+.|+|||..+..+.. .... .++... .|
T Consensus 105 -----~~P~v~~~--~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l 177 (214)
T 1ow0_A 105 -----FRPEVHLL--PPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSIL 177 (214)
T ss_dssp -----CCCEEEEE--CCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEE
T ss_pred -----CCCEEEec--CCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEE
Confidence 00100000 0111123468889999999 5 454 69999999999876521 1222 344332 23
Q ss_pred EEeecCCCCCccEEEEEecccccee--eeeee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSK--LKWLD 393 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~--~~~~~ 393 (803)
.+.....++.|.|+|.|.|..-... ++|..
T Consensus 178 ~v~~~~~~~~~~ytC~v~n~~l~~~~~~~~~~ 209 (214)
T 1ow0_A 178 RVAAEDWKKGDTFSCMVGHEALPLAFTQKTID 209 (214)
T ss_dssp EEEHHHHHHTCCEEEEEECTTCTTSEECCEEC
T ss_pred EECHHHccCCCEEEEEEECCCCCCCceEEEEE
Confidence 4444433458999999999775433 45643
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=107.71 Aligned_cols=90 Identities=18% Similarity=0.368 Sum_probs=72.9
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECcc---CCCeeEEEEcCee-cc---ceeEEEec--------CeeEEEEecCCCCc
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSL-IK---GRNITYEN--------NVARFTVVNCSESS 208 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~---p~p~i~W~~~~~~-~~---~~~~~~~~--------~~~~L~i~~v~~~d 208 (803)
.|.|...|.++.+.+|++++|.|.+.+. |.|.|.|||+... +. ..++.+.. ....|+|.++..+|
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 86 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 86 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence 3567778899999999999999999764 8999999997421 11 12233221 24789999999999
Q ss_pred ceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 209 EGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
+|.|+|.|.|..|..+.+++|.|.+
T Consensus 87 aG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 87 AGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 9999999999999999999999998
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=105.95 Aligned_cols=90 Identities=17% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCC---CeeEEEEcCeec-c---ceeEEEe--------cCeeEEEEecCCCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWYKDDSLI-K---GRNITYE--------NNVARFTVVNCSES 207 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~~~~~~~-~---~~~~~~~--------~~~~~L~i~~v~~~ 207 (803)
..|.|...+..+.+.+|+.++|.|.+.|.|. |.|.|+|++... . ..++... .....|.|.+++.+
T Consensus 3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 82 (108)
T 3cx2_A 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82 (108)
T ss_dssp CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence 3567777888899999999999999999988 999999987321 1 1122221 12468999999999
Q ss_pred cceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 208 SEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 208 d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
|+|.|+|.|.|..|....++.|.|.
T Consensus 83 D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 83 FTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999999999999885
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=122.26 Aligned_cols=135 Identities=12% Similarity=0.181 Sum_probs=83.4
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCce-----eeeeecccCCCCceeEEeeeccCcccCCchhhhhccccccccccccee
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAG-----TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (803)
+...|+|.+++.+|+|.|.|.+.+..+ ...... ...
T Consensus 77 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~---------------------------------------~~~ 117 (230)
T 3n9g_H 77 STVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWG---------------------------------------QGT 117 (230)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEEC---------------------------------------CCE
T ss_pred CEEEEEECCCChhhCEEEEEEEccCCCCcccccccccC---------------------------------------CCE
Confidence 467899999999999999999987531 111100 022
Q ss_pred eeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCC-----eEEE
Q psy2776 496 NLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEE-----TSTI 566 (803)
Q Consensus 496 ~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~-----~~~L 566 (803)
.|.|.. ++..|.+..... ...+..|+.+.|.|.+.+.++ +.+.| ++..+..+... ......+ .+.|
T Consensus 118 ~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L 192 (230)
T 3n9g_H 118 LVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVV 192 (230)
T ss_dssp EEEECSSCCBCCEEEEECC---CCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEE
T ss_pred EEEEEecCCCCCEEEecCC---CccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEE
Confidence 333332 222222221111 123457999999999988543 46889 55554322100 0011111 2579
Q ss_pred EEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 567 ~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.....+| |.|+|.|.|..+.......|.|..
T Consensus 193 ~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~ 225 (230)
T 3n9g_H 193 TVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS 225 (230)
T ss_dssp EEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred EECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence 999999999 999999999988877777776643
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-11 Score=123.56 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=106.4
Q ss_pred ceEEeecceeEEEEEEcCcC--------------CCeeEEeeC--Ce--ee---cCC----------CcEEEE-------
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--------------RPEISWMKN--GA--EI---TDS----------KACRIF------- 558 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--------------~~~v~W~~~--g~--~i---~~~----------~~~~~~------- 558 (803)
...+.+|++++|.|.....+ ...+.|++. |+ .+ .++ .+..+.
T Consensus 167 sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~~ 246 (401)
T 3f8u_B 167 APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEP 246 (401)
T ss_dssp SCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCCS
T ss_pred cEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccccc
Confidence 46789999999999986443 346899863 21 11 011 111111
Q ss_pred --ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCce
Q psy2776 559 --IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636 (803)
Q Consensus 559 --~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 636 (803)
...++..|.|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus 247 ~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~------------------------------------ 290 (401)
T 3f8u_B 247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK------------------------------------ 290 (401)
T ss_dssp SCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------------------------------------
T ss_pred ccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc------------------------------------
Confidence 112457999999999999999999999887777777787765
Q ss_pred eEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeE-EecCC-eEEEEEEEeec-CC--CceEEe-eCC
Q psy2776 637 YYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKT-VKEKG-TIRLMAKVKAS-PA--PSIVWF-RNN 710 (803)
Q Consensus 637 ~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-v~~g~-~v~L~C~~~g~-p~--~~v~W~-~~~ 710 (803)
+|.+...+.... +..|+ .++|.|.+.|. |. +.+.|+ +++
T Consensus 291 -----------------------------------pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~~rdg 335 (401)
T 3f8u_B 291 -----------------------------------PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG 335 (401)
T ss_dssp -----------------------------------CCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEEEEESS
T ss_pred -----------------------------------CCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEEEecCC
Confidence 344433333322 45676 89999999986 65 689995 765
Q ss_pred ---eeccCCC-----CeEEEeeCc---eEEEEEecCCCC-CCceeEEEEEEccC---cceeeeEE
Q psy2776 711 ---KPLLSSP-----KKREIFDGE---NIILELKEADSE-TDAGDYKVVATNEL---GSATHGAR 760 (803)
Q Consensus 711 ---~~l~~~~-----~~~~~~~~~---~~~L~i~~v~~~-~D~G~Y~C~a~N~~---G~~~~~~~ 760 (803)
..+.... ......++. .+.|.|... +. ++.+.|+|.+.|.. |..+.+++
T Consensus 336 ~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~-~~e~~g~~YTC~V~H~sL~~g~rs~sVt 399 (401)
T 3f8u_B 336 PGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPV-TTEQHGARYACRIHHPSLPASGRSAEVT 399 (401)
T ss_dssp SSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCC-CGGGTTCEEEEEEECTTSCTTCEEEEEE
T ss_pred CCCceecccccccccccccCCCceEEEEEEEEEccC-ccccCCCEEEEEEEcCCCCCCcceEEEE
Confidence 2221111 111112222 234555443 22 24459999999976 55444443
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=105.88 Aligned_cols=88 Identities=24% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCeeeccC----cCeeeecCCcEEEEEEECccCCCeeEEEEcCeecccee----EEEecCeeEEEEecCCCCcceEEEEE
Q psy2776 144 APVIQEPL----KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 144 ~p~i~~~~----~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
+|.|...+ ....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ........+|.|.+++.+|+|.|+|.
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 83 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEE
Confidence 45555332 45678899999999999999999999999998876431 34444556899999999999999999
Q ss_pred EEcCCcCeeeEEEEEE
Q psy2776 216 ATNEAGTAETSCTLLV 231 (803)
Q Consensus 216 a~n~~g~~~~s~~l~V 231 (803)
|.|..|....++.|.|
T Consensus 84 a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 84 VENEYGSINHTYHLDV 99 (100)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEE
Confidence 9999999888888776
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-11 Score=101.41 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=70.3
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.| |....++.
T Consensus 16 ~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~ 90 (95)
T 2k1m_A 16 RSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFD 90 (95)
T ss_dssp CCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEE
T ss_pred CcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEE
Confidence 46788999999999999 78889999999999998888888877777789999999999999999999 66777788
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 91 l~V~ 94 (95)
T 2k1m_A 91 LKVI 94 (95)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8774
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-12 Score=115.53 Aligned_cols=103 Identities=24% Similarity=0.325 Sum_probs=83.9
Q ss_pred ceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCC--CcEEEE--ecCC--eEE
Q psy2776 493 RTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDS--KACRIF--IDEE--TST 565 (803)
Q Consensus 493 ~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~--~~~~~~--~~~~--~~~ 565 (803)
..+.|.|..+|.+.. .....+.+|+.+.|.|.+.|.|.|. +.|++++..+... .++.+. ...+ .+.
T Consensus 5 ~~~~l~V~~~P~i~~-------~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T 2cry_A 5 SSGTLTVNGPPIISS-------TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77 (122)
T ss_dssp CCCCCCCCSSCCEEE-------ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEE
T ss_pred eEEEEEEecCCCccC-------CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEE
Confidence 367788888886532 2356788999999999999999987 9999999988753 555553 2233 569
Q ss_pred EEEeeeccCcC-eEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 566 IAIYSVVRADT-STYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 566 L~i~~v~~~ds-G~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
|.|.++..+|+ |.|+|.|.|..|.....+.|.|..++
T Consensus 78 L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 115 (122)
T 2cry_A 78 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115 (122)
T ss_dssp EECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred EEEcCCChhhCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence 99999999999 99999999999999999999887643
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=104.76 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=70.3
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
...+.+|+++.|.|.+. .|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.| ...++.
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~~----~~~~~~ 93 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQA-GQAEAGEYSCEAGG----QQLSFR 93 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTC-CTTTCSCEEEEETT----EECCEE
T ss_pred cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCC-CcccCEEEEEEcCC----CcEEEE
Confidence 45789999999999998 8999999999999998888988888888889999999 79999999999965 456678
Q ss_pred EEEEee
Q psy2776 761 VTVDVE 766 (803)
Q Consensus 761 l~V~~~ 766 (803)
|.|..+
T Consensus 94 l~V~~p 99 (102)
T 2eo1_A 94 LQVAGQ 99 (102)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 888643
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=105.76 Aligned_cols=91 Identities=20% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCCeeccCCCCeEEEe-eC-------ceEEEEEecCCCCCCc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNNKPLLSSPKKREIF-DG-------ENIILELKEADSETDA 741 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~~~l~~~~~~~~~~-~~-------~~~~L~i~~v~~~~D~ 741 (803)
+|.|...+....+.+|++++|.|.+.|.| .+.+.|++++..+.......... .. ....|.|.++ +.+|+
T Consensus 10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~ 88 (112)
T 3so5_A 10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNV-EFTSE 88 (112)
T ss_dssp SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSC-CGGGC
T ss_pred CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecc-ccccC
Confidence 88898888889999999999999999654 57899999999886543211111 11 1468999999 78999
Q ss_pred eeEEEEEEccCcc-eeeeEEEEE
Q psy2776 742 GDYKVVATNELGS-ATHGARVTV 763 (803)
Q Consensus 742 G~Y~C~a~N~~G~-~~~~~~l~V 763 (803)
|.|+|.|.|..|. .+..+.|.|
T Consensus 89 G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 89 GXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEEEEEEeCCCcEEEeEEEEEe
Confidence 9999999999999 468888876
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=104.88 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=67.1
Q ss_pred eEeccceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
++..+....+.+|+++.|.|.+. |.|.+.+.|++++....... ... .+. .|.|.++ +.+|+|.|+|.|.|..|
T Consensus 13 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~-~~~--~L~i~~v-~~~D~G~Y~C~a~n~~g 86 (98)
T 1gl4_B 13 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMD-FNG--ILTIRNV-QPSDAGTYVCTGSNMFA 86 (98)
T ss_dssp EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEE-ETT--EEEECSC-CGGGCEEEEEEEECSSC
T ss_pred EEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--eec-CCC--EEEEeCC-ChhhCEEEEEEecCCCC
Confidence 33444567899999999999998 68999999999865443322 122 222 6999999 79999999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
..+..+.|.|+
T Consensus 87 ~~~~~~~l~V~ 97 (98)
T 1gl4_B 87 MDQGTATLHVQ 97 (98)
T ss_dssp EEEEEEEEEEC
T ss_pred ccccEEEEEEe
Confidence 99999998885
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-11 Score=104.51 Aligned_cols=97 Identities=14% Similarity=0.249 Sum_probs=80.6
Q ss_pred eeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec
Q psy2776 494 TTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV 572 (803)
Q Consensus 494 ~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~ 572 (803)
.+.|.|...| .+ ...+....+.+|+++.|.|.+.+. |.+.|+|++..+..+.++.+..++....|.|.++.
T Consensus 10 ~~~l~V~~~pp~~------~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~ 81 (113)
T 2edh_A 10 SAMLTVRALPIKF------TEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLV 81 (113)
T ss_dssp CCCCCCCCSCCCE------EECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCC
T ss_pred EEEEEEEcCCCcc------cccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCC
Confidence 5667777554 32 122346789999999999999875 68999999999998888888877777899999999
Q ss_pred cCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 573 RADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+|+|.|+|.| |....++.|.|..+|
T Consensus 82 ~~D~G~Y~C~a----~~~~~~~~l~V~~~p 107 (113)
T 2edh_A 82 AEDAGEYLCMC----GKERTSAMLTVRAMP 107 (113)
T ss_dssp STTCEEEEEEE----TTEEEEEEEEECCCC
T ss_pred hhhCEEEEEEe----CCCCEEEEEEEeCCC
Confidence 99999999999 778889999998766
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8e-11 Score=100.22 Aligned_cols=80 Identities=25% Similarity=0.251 Sum_probs=72.4
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+.+|+.+.|.|.+. .|.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.| |....++.|.
T Consensus 18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~ 92 (100)
T 2yuv_A 18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92 (100)
T ss_dssp EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEE
T ss_pred cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEE
Confidence 5678999999999998 7999999999999998888888887777789999999999999999999 7788899999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|..+|
T Consensus 93 V~~~P 97 (100)
T 2yuv_A 93 VRSGP 97 (100)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98766
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-10 Score=111.77 Aligned_cols=71 Identities=11% Similarity=0.291 Sum_probs=52.4
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe-----ec--------cceeEEEe-----cCeeEEEEecCCCCcce
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS-----LI--------KGRNITYE-----NNVARFTVVNCSESSEG 210 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~-----~~--------~~~~~~~~-----~~~~~L~i~~v~~~d~G 210 (803)
..+..+.+.+|++++|.|.+.+.+ +.+.|+|... .+ ...++... .+..+|.|.+++.+|+|
T Consensus 6 q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G 84 (207)
T 1ypz_E 6 QSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSG 84 (207)
T ss_dssp ESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCE
T ss_pred ECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCE
Confidence 345667889999999999998654 4799998531 11 11223322 34568999999999999
Q ss_pred EEEEEEEcCC
Q psy2776 211 RYTCKATNEA 220 (803)
Q Consensus 211 ~Y~C~a~n~~ 220 (803)
.|.|.+.+..
T Consensus 85 ~Y~C~~~~~~ 94 (207)
T 1ypz_E 85 TYFCAADTWH 94 (207)
T ss_dssp EEEEEEECBC
T ss_pred EEEEEEecCC
Confidence 9999999864
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=115.69 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--e---eec---------CCCcEEEEe--cCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--A---EIT---------DSKACRIFI--DEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~---~i~---------~~~~~~~~~--~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|++++|.|.+.+.+ ...+.|+|.. . .|. ...++.+.. ......|.|.++..+|+|.
T Consensus 10 ~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~ 89 (229)
T 1hxm_A 10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGS 89 (229)
T ss_dssp EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred EEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeE
Confidence 56789999999999998654 3679999852 1 111 124565553 2456799999999999999
Q ss_pred EEEEEEcCC
Q psy2776 579 YTVTATNAA 587 (803)
Q Consensus 579 Y~C~a~n~~ 587 (803)
|.|.+.+..
T Consensus 90 Y~C~~~~~~ 98 (229)
T 1hxm_A 90 YYCACDTLG 98 (229)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 999998863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 803 | ||||
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 7e-21 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 0.003 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 6e-20 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 2e-05 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-19 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-14 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 5e-06 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 0.001 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 3e-19 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 0.004 | |
| d1uema_ | 117 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 6e-18 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 2e-17 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 3e-06 | |
| d1x3da1 | 105 | b.1.2.1 (A:8-112) Fibronectin type-III domain cont | 4e-17 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 6e-17 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-14 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 2e-09 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 0.001 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 6e-17 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-15 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 1e-10 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-05 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 0.003 | |
| d1ueya_ | 127 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 1e-16 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 1e-16 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 8e-05 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 3e-16 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 0.001 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-16 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 6e-12 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 5e-06 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 0.002 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 5e-16 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 1e-04 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 8e-16 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 0.002 | |
| d1bpva_ | 104 | b.1.2.1 (A:) Type I titin module {Human (Homo sapi | 9e-16 | |
| d1bpva_ | 104 | b.1.2.1 (A:) Type I titin module {Human (Homo sapi | 4e-04 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 2e-15 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 5e-10 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 3e-04 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 2e-15 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 9e-05 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 3e-15 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 9e-06 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-15 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-09 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 2e-06 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 6e-04 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 1e-14 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 0.002 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-14 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 4e-13 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 9e-05 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 7e-04 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 2e-14 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-08 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-04 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 0.003 | |
| d2djsa1 | 95 | b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human | 2e-14 | |
| d2djsa1 | 95 | b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human | 0.002 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 2e-14 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 2e-04 | |
| d1x5xa1 | 96 | b.1.2.1 (A:8-103) Fibronectin type-III domain cont | 2e-14 | |
| d2crma1 | 107 | b.1.2.1 (A:8-114) Fibronectin type-III domain cont | 3e-14 | |
| d1x4xa1 | 93 | b.1.2.1 (A:8-100) Fibronectin type-III domain cont | 4e-14 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 5e-14 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 2e-12 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 8e-06 | |
| d1wk0a_ | 137 | b.1.2.1 (A:) Fibronectin type-III domain containin | 1e-13 | |
| d1cd9b2 | 106 | b.1.2.1 (B:108-213) Granulocyte colony-stimulating | 2e-13 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 2e-13 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 5e-08 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 3e-13 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 1e-04 | |
| d2ic2a1 | 107 | b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit | 3e-13 | |
| d2ic2a1 | 107 | b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit | 0.002 | |
| d1wisa1 | 111 | b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) | 5e-13 | |
| d2vkwa2 | 93 | b.1.2.1 (A:601-693) Neural cell adhesion molecule | 5e-13 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 6e-13 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-11 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-06 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 7e-13 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 9e-05 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 7e-13 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 9e-10 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-06 | |
| d1tdqa2 | 92 | b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu | 7e-13 | |
| d1tdqa2 | 92 | b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu | 2e-04 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 1e-12 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 1e-07 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 1e-04 | |
| d1x5aa1 | 94 | b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse | 1e-12 | |
| d1cfba1 | 100 | b.1.2.1 (A:610-709) Neuroglian, two amino proximal | 3e-12 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 3e-12 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 0.002 | |
| d1x5ka1 | 111 | b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [ | 3e-12 | |
| d1x5ka1 | 111 | b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [ | 2e-04 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 4e-12 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 2e-07 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 2e-04 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 3e-04 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-11 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-08 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 1e-04 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 0.004 | |
| d1wfua_ | 120 | b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat | 2e-11 | |
| d2d9qb2 | 105 | b.1.2.1 (B:204-308) Granulocyte colony-stimulating | 2e-11 | |
| d1tdqa3 | 86 | b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic | 2e-11 | |
| d1tdqa3 | 86 | b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic | 0.002 | |
| d1wfta_ | 123 | b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus | 3e-11 | |
| d1wfta_ | 123 | b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus | 0.004 | |
| d1qr4a1 | 87 | b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) | 4e-11 | |
| d1qg3a1 | 92 | b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum | 5e-11 | |
| d1fnha3 | 89 | b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod | 6e-11 | |
| d1fnha3 | 89 | b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod | 7e-06 | |
| d1fyhb1 | 98 | b.1.2.1 (B:12-109) Interferon-gamma receptor alpha | 7e-11 | |
| d1uc6a_ | 109 | b.1.2.1 (A:) Ciliary neurotrophic factor receptor | 9e-11 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 9e-11 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 2e-06 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 2e-04 | |
| d1iarb2 | 101 | b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch | 1e-10 | |
| d1f6fb2 | 103 | b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu | 1e-10 | |
| d1fnha1 | 90 | b.1.2.1 (A:3-92) Fibronectin, different Fn3 module | 1e-10 | |
| d1fnha1 | 90 | b.1.2.1 (A:3-92) Fibronectin, different Fn3 module | 7e-05 | |
| d1n26a3 | 104 | b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c | 3e-10 | |
| d1x5ia1 | 113 | b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [ | 3e-10 | |
| d1cd9b1 | 107 | b.1.2.1 (B:1-107) Granulocyte colony-stimulating f | 4e-10 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 4e-10 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 1e-06 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 4e-04 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 0.001 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 4e-10 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 3e-08 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 3e-05 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 0.001 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 4e-10 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 3e-07 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 3e-06 | |
| d2cuma1 | 93 | b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) | 5e-10 | |
| d2cuma1 | 93 | b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) | 2e-04 | |
| d1qr4a2 | 88 | b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu | 5e-10 | |
| d1qr4a2 | 88 | b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu | 5e-04 | |
| d2dtge1 | 102 | b.1.2.1 (E:808-909) Insulin receptor {Human (Homo | 5e-10 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 6e-10 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 5e-08 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 1e-04 | |
| d2ibga1 | 95 | b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit | 6e-10 | |
| d1j8ka_ | 94 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 6e-10 | |
| d1j8ka_ | 94 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 2e-05 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 6e-10 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 9e-07 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 3e-06 | |
| d1cfba2 | 105 | b.1.2.1 (A:710-814) Neuroglian, two amino proximal | 7e-10 | |
| d1cfba2 | 105 | b.1.2.1 (A:710-814) Neuroglian, two amino proximal | 2e-04 | |
| d1fnaa_ | 91 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 7e-10 | |
| d1fnaa_ | 91 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 1e-06 | |
| d1bqua2 | 115 | b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki | 9e-10 | |
| d2haza1 | 101 | b.1.2.1 (A:489-589) Neural cell adhesion molecule | 1e-09 | |
| d2b5ic1 | 95 | b.1.2.1 (C:130-224) Cytokine receptor common gamma | 2e-09 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 2e-09 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-08 | |
| d1qg3a2 | 103 | b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum | 2e-09 | |
| d1k85a_ | 88 | b.1.2.1 (A:) Fibronectin type III domain from chit | 2e-09 | |
| d1fnfa3 | 89 | b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m | 3e-09 | |
| d1fnfa3 | 89 | b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m | 3e-07 | |
| d1x5ja1 | 100 | b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [ | 3e-09 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 4e-09 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 2e-07 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 2e-06 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 0.002 | |
| d1fnfa2 | 91 | b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m | 4e-09 | |
| d1fnfa2 | 91 | b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m | 1e-05 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 5e-09 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 9e-06 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 6e-04 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 5e-09 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-07 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 4e-04 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 6e-09 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 0.001 | |
| d1bqua1 | 95 | b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine- | 6e-09 | |
| d1tdqa1 | 93 | b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) | 8e-09 | |
| d1tdqa1 | 93 | b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) | 2e-05 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 1e-08 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 4e-04 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 2e-08 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 2e-05 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-04 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 0.003 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 2e-08 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 2e-07 | |
| d1tena_ | 90 | b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId | 2e-08 | |
| d1tena_ | 90 | b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId | 0.004 | |
| d1wj3a_ | 117 | b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s | 3e-08 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 4e-08 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 1e-06 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 0.002 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 4e-08 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 6e-07 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 2e-05 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 0.002 | |
| d2cuia1 | 101 | b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) | 4e-08 | |
| d1ujta_ | 120 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 5e-08 | |
| d1fnha2 | 90 | b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu | 5e-08 | |
| d2cuha1 | 102 | b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) | 7e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 8e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 7e-07 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 0.002 | |
| d1axib2 | 106 | b.1.2.1 (B:131-236) Growth hormone receptor {Human | 8e-08 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 9e-08 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 9e-07 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 3e-05 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 1e-07 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 2e-04 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 0.004 | |
| d2gysa4 | 100 | b.1.2.1 (A:317-416) Common beta-chain in the GM-CS | 1e-07 | |
| d3d48r2 | 104 | b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom | 1e-07 | |
| d1y6kr1 | 99 | b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10 | 2e-07 | |
| d1fnfa1 | 94 | b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m | 2e-07 | |
| d1fnfa1 | 94 | b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m | 1e-05 | |
| d2b5ib2 | 104 | b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch | 2e-07 | |
| d2dtge3 | 125 | b.1.2.1 (E:468-592) Insulin receptor {Human (Homo | 2e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 3e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 0.001 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 3e-07 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 4e-06 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 5e-04 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 6e-07 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 7e-07 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 1e-04 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 9e-07 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 1e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 9e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 0.002 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 3e-06 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 2e-04 | |
| d1owwa_ | 93 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 4e-06 | |
| d1owwa_ | 93 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 0.002 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 6e-06 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 1e-04 | |
| d2fnba_ | 95 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 6e-06 | |
| d2fnba_ | 95 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 5e-04 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 7e-06 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 5e-05 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 1e-05 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 1e-05 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 7e-05 | |
| d1vcaa2 | 90 | b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 | 1e-05 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 2e-05 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 9e-04 | |
| d1hxma2 | 86 | b.1.1.2 (A:121-206) T-cell antigen receptor {Human | 7e-05 | |
| d1v5ja_ | 108 | b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId | 7e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 8e-05 | |
| d1l6za2 | 96 | b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, | 1e-04 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 1e-04 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 3e-04 | |
| d2nxyb2 | 84 | b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H | 3e-04 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 7e-04 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 0.002 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 0.002 | |
| d1o0va1 | 104 | b.1.1.2 (A:228-330) Immunoglobulin heavy chain eps | 0.003 | |
| d2cspa1 | 117 | b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho | 0.004 |
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.0 bits (212), Expect = 7e-21
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW----NK 93
LS P APD P I S++SV + W P +G P+ + +E + W +
Sbjct: 5 HGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSA 63
Query: 94 IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
I + + E+T L Y FRV A+N +G S +R VV
Sbjct: 64 IPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.3 bits (83), Expect = 0.003
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVA--TLDPSTLQYTVENLRDKS 635
A TS+ ++ + + ++ ++ + +A + PS L + L
Sbjct: 21 TASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGI 80
Query: 636 EYYFQVFAENSVGLGP 651
Y F+V A N +G
Sbjct: 81 SYKFRVRALNMLGESE 96
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.4 bits (205), Expect = 6e-20
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM--VWNKIETTSTTY 101
AP + +D++ TL WRPP G + GY++E + NK +
Sbjct: 2 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 61
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
V L T +FRV VN G + + V ++
Sbjct: 62 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+ GY+++ + S ++ +TV++L + F+V N G AT
Sbjct: 33 IDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 90
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 81.8 bits (201), Expect = 2e-19
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVAR 198
EAP I E ++ G S V G P P+ +WYK+ I + E+NV
Sbjct: 3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + + KA N AG + LLVQ K
Sbjct: 63 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 68.4 bits (166), Expect = 1e-14
Identities = 20/93 (21%), Positives = 37/93 (39%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
+AP ER + +TV + +V P P W++N + S + + +N+
Sbjct: 3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ + D+ V A N G + A + V
Sbjct: 63 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIY-SVVR 573
++SQ + S V+ G P PE W KNG +I S + E+ + V
Sbjct: 11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 70
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQV 598
D+++ V A N AG TS L V
Sbjct: 71 EDSASIMVKAINIAGETSSHAFLLV 95
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454
W+++ K + + E+NV + + + KA N AG +
Sbjct: 37 EWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 92
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (199), Expect = 3e-19
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 44 PGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
PG P + GR + L W PP DG SP++ Y +E ++ + +
Sbjct: 2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 61
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPAS 128
V+ L Y FR+ A N +G GP S
Sbjct: 62 VSSLLPGKTYSFRLRAANKMGFGPFS 87
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.004
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 584 TNAAGSTSLDLSLQ---------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ + L + Y ++ + +V S ++ TV +L
Sbjct: 11 QGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPG 68
Query: 635 SEYYFQVFAENSVGLGP 651
Y F++ A N +G GP
Sbjct: 69 KTYSFRLRAANKMGFGP 85
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 6e-18
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM 89
S+ L PG P P++ + +SVTL W+P P + Y++E+ +
Sbjct: 2 SSGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGT-LPASAYIIEAFSQSVSN 60
Query: 90 VWNKIETT--STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
W + +T Y V L Y+F V A+N G S + V +
Sbjct: 61 SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.1 bits (186), Expect = 2e-17
Identities = 27/100 (27%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 31 QASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEF 88
A ATT P AP S + L WR P D H Y +
Sbjct: 2 HAPATTG----PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARE 57
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V N + L Y+FRV A N G+G +S
Sbjct: 58 RVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESS 97
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 3e-06
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
L Y + ++ + T P +Q T++NL + Y F+V A+N G G
Sbjct: 42 NLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGE 95
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (184), Expect = 4e-17
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 34 ATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW-N 92
A TL P P+ P I R+ +S+TL W+ P D S + +VLE + +
Sbjct: 1 AEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQ 59
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ +++TKL+ FR++A N GT S
Sbjct: 60 CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFS 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 74.8 bits (183), Expect = 6e-17
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 144 APVIQEPLKDS------VAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYE 193
AP K A ++V C G P P ++W K+ K +
Sbjct: 1 APYWTNTEKMEKRLHAVPAA--NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 58
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
N + + S +G YTC NE G+ + L V
Sbjct: 59 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 67.9 bits (165), Expect = 1e-14
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 672 APLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
AP + E+ E++ V T++ +P P++ W +N K +
Sbjct: 1 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ E+ +D G+Y V NE GS H + V
Sbjct: 61 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 52.9 bits (126), Expect = 2e-09
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT-DSKACRIFIDEETSTIAIYSVVRA 574
+ + + K G P P + W+KNG E + + + + ++ + SVV +
Sbjct: 13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 72
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVL 599
D YT N GS + L V+
Sbjct: 73 DKGNYTCVVENEYGSINHTYHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.001
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 400 WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
W ++ + + N + + S +G YTC NE G+
Sbjct: 39 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 90
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (183), Expect = 6e-17
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN---ITYENNVARFTV 201
P I + +D SV L V+G W K I+ + N ++ T+
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + G YT N+ G+ + L V K
Sbjct: 61 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 3e-15
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P I+ E++ V+ ++ L KV + + W + K + S + L +
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
A E G Y ++ N+LGS +TV V+K P+
Sbjct: 61 LAARQE-HCGCYTLLVENKLGSRQAQVNLTV-VDKPDPPA 98
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 1e-10
Identities = 18/86 (20%), Positives = 36/86 (41%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+ Q++ ++ K G +WMK +I +S+ ++ E S + I + +
Sbjct: 7 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 66
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLG 600
YT+ N GS ++L V+
Sbjct: 67 HCGCYTLLVENKLGSRQAQVNLTVVD 92
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 3e-05
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD-TP 50
LTI+ + G YT+ + N LG A +T++ P P TP
Sbjct: 57 KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTP 101
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.003
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
+ N ++ T++ + G YT N+ G+ +
Sbjct: 48 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 84
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.0 bits (183), Expect = 1e-16
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW 91
+S T + P P E+ + D SV L W P D+ + + +W
Sbjct: 5 SSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLW 64
Query: 92 NKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+ + T L+ Y FRV AVN+IG S + + KA + P
Sbjct: 65 HHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (180), Expect = 1e-16
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD-EFMVWNKIETTSTT 100
+AP +SV+L W+ P+ + Y ++ ++KD E ++ ++ +T
Sbjct: 2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPN-GIILEYEIKYYEKDKEMQSYSTLKAVTTR 60
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V+ L Y+F+V A + G G S
Sbjct: 61 ATVSGLKPGTRYVFQVRARTSAGCGRFS 88
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 8e-05
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 586 AAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
AG TS+ L Q +L Y I+ EK+ + +TL T + TV L+ + Y
Sbjct: 14 RAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDK-EMQSYSTLKAVTTRATVSGLKPGTRY 72
Query: 638 YFQVFAENSVGLGP-----EATTE 656
FQV A S G G E T
Sbjct: 73 VFQVRARTSAGCGRFSQAMEVETG 96
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.8 bits (178), Expect = 3e-16
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
+T PG P + S++S+ L W PP+ D + Y L D +
Sbjct: 5 ITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEP 61
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T+Y + L Y FR+AA + G G ++
Sbjct: 62 GTSYRLQGLKPNSLYYFRLAARSPQGLGAST 92
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.001
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 586 AAGSTSLDLSLQ------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYF 639
TS+ LS + Y + ++ + ++ Y ++ L+ S YYF
Sbjct: 21 PESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITI--EPGTSYRLQGLKPNSLYYF 78
Query: 640 QVFAENSVGLGP 651
++ A + GLG
Sbjct: 79 RLAARSPQGLGA 90
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 72.1 bits (176), Expect = 4e-16
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 144 APVI-QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
AP Q+P K V VT+ C V+G+P P++ W + + G T ++ +
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS--GLVIK 59
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLV 231
+G Y C+ATNE G + V
Sbjct: 60 GVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 60.2 bits (145), Expect = 6e-12
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 672 APLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
AP + ++ E+ VK+ + + KV PAP++VW N KPL + + D +I
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATVTDSGLVIK 59
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+K D G Y ATNE G V V
Sbjct: 60 GVKNGDK----GYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 43.2 bits (101), Expect = 5e-06
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
+ K G P P + W N ++ + S + I V D Y ATN
Sbjct: 22 TIPCKVTGLPAPNVVWSHNAKPLSGGR-----ATVTDSGLVIKGVKNGDKGYYGCRATNE 76
Query: 587 AGSTSLDLSLQV 598
G + +QV
Sbjct: 77 HGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 35.9 bits (82), Expect = 0.002
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAETRT 453
+ +G Y C+ATNE G T
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYFET 84
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 5e-16
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 35 TTKVTLLSAPGAPDTPEIVGR--SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM--V 90
+ + + P AP+ P ++ L W P DG+SP+ Y+LE + + +
Sbjct: 2 SAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVL 60
Query: 91 WNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
++ +T+ V L Y FR+ AVN +G G S +T V +
Sbjct: 61 LASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP 107
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629
+ + T D + ++ YI++ E N+ +A++DP TV+
Sbjct: 18 VATLSTVERRAINLTWTKPF---DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVK 74
Query: 630 NLRDKSEYYFQVFAENSVGLG-PEATTELVAL 660
L Y F++ A N VG G TE V+L
Sbjct: 75 GLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 106
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.7 bits (175), Expect = 8e-16
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTT 100
+ PG S +S+T+ W P + Y L +K ++ +S +
Sbjct: 8 VQLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDK-EQDVDVSSHS 65
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
Y + L EY FRV A N G G ++
Sbjct: 66 YTINGLKKYTEYSFRVVAYNKHGPGVST 93
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.002
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 586 AAGSTSLDLS--------LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
AA TS+ ++ ++ Y + EK + K V S YT+ L+ +EY
Sbjct: 21 AASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHS---YTINGLKKYTEY 77
Query: 638 YFQVFAENSVGLGP 651
F+V A N G G
Sbjct: 78 SFRVVAYNKHGPGV 91
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.5 bits (174), Expect = 9e-16
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK--DEFMVWNKIETTST 99
S P P + + +VTL W P+ G +T Y++E D ++ N
Sbjct: 1 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN 60
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGT-GPASHNTRYVVVKAPVDA 142
+ V+ LT Y FRV A NA G P S + + + V+A
Sbjct: 61 EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 104
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG--PEAT 654
++ YI+++++ + ++ K + ++TV L + + Y F+V A+N+ G P
Sbjct: 33 KITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEP 92
Query: 655 TELV 658
++ +
Sbjct: 93 SDAI 96
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 69.9 bits (170), Expect = 2e-15
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNC 204
P + + D+ A S + CV SG P P ++W +D + +N E +
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR-IEVSGGELRFSKL 60
Query: 205 SESSEGRYTCKATNEAGTAETSCTLLVQ 232
G Y C A N+ GT S L VQ
Sbjct: 61 VLEDSGMYQCVAENKHGTVYASAELTVQ 88
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 54.9 bits (131), Expect = 5e-10
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P +++ + +R P P++ W R+ +PL S +
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRF---- 57
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
D+G Y+ VA N+ G+ A +TV
Sbjct: 58 -SKLVLEDSGMYQCVAENKHGTVYASAELTV 87
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 37.9 bits (87), Expect = 3e-04
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+ + S + G PRP + W+++G + + E +V
Sbjct: 8 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELR----FSKLVLE 63
Query: 575 DTSTYTVTATNAAGSTSLDLSLQV 598
D+ Y A N G+ L V
Sbjct: 64 DSGMYQCVAENKHGTVYASAELTV 87
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 2e-15
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIET 96
T PG D+S+ + W+ P + +TGY + +++ V + +
Sbjct: 6 THEDVPGPVGHLSFSEILDTSLKVSWQEPGEKN-GILTGYRISWEEYNRTNTRVTHYLPN 64
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ Y VT LT Y VAA+ + G G S +T
Sbjct: 65 VTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 99
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 9e-05
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+ GY I +E N L TL+Y V L + Y +V A S G G + +
Sbjct: 40 ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS 98
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 3e-15
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYE 102
PG P T I + ++ L W PP++ + GY L+ + +
Sbjct: 1 PGRP-TMMISTTAMNTALLQWHPPKELP-GELLGYRLQYCRADEARPNTIDFGKDDQHFT 58
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPAS 128
VT L Y+FR+AA N G G
Sbjct: 59 VTGLHKGTTYIFRLAAKNRAGLGEEF 84
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 9e-06
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657
+LGY +Q + + + +TV L + Y F++ A+N GLG E E+
Sbjct: 30 LLGYRLQYCRADEARPNTIDF-GKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 88
Query: 658 V 658
Sbjct: 89 R 89
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.9 bits (170), Expect = 3e-15
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 145 PVIQ--EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-----GRNITYENNVA 197
P +Q + + ++ A SVTL C G P P + W KD I+ + ++ +
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
T+ N ++ E Y C A N+AG + S L V K
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.6 bits (125), Expect = 3e-09
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL-KEADSETDA 741
T ++ L+ P P++ W ++ +P+ + + E + EL + D
Sbjct: 16 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDE 75
Query: 742 GDYKVVATNELGSATHGARVTV 763
+Y +A N+ G + V
Sbjct: 76 AEYVCIAENKAGEQDASIHLKV 97
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.9 bits (105), Expect = 2e-06
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKA--CRIFIDEETSTIAIYSVVRADTSTYTVTAT 584
+ GFP P +SW K+G I + + + +++S + I +V + D + Y A
Sbjct: 24 TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 83
Query: 585 NAAGSTSLDLSLQVLG 600
N AG + L+V
Sbjct: 84 NKAGEQDASIHLKVFA 99
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (86), Expect = 6e-04
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
W + + ++ + ++ + T+ N ++ E Y C A N+AG +
Sbjct: 39 WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 93
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.8 bits (167), Expect = 1e-14
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 39 TLLSAP-GAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLESHDKD------EFMV 90
T +AP G P + + S+ + W+ P ++ + + GY + + +V
Sbjct: 3 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 62
Query: 91 WNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
K S Y + L +Y V A N GTGP+S
Sbjct: 63 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS 100
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
+ YT++NL+ ++Y V A N G GP ++
Sbjct: 67 TGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE 102
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 68.0 bits (165), Expect = 2e-14
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI----KGRNITYENNVARF 199
P + + D S+ +C V G P P++ W+KDD+ + + E
Sbjct: 8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
T+ + +YTCKA N G A + LLV+
Sbjct: 68 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 63.8 bits (154), Expect = 4e-13
Identities = 26/97 (26%), Positives = 39/97 (40%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
P P F + + V E R KV+ P P ++WF+++ P+ S + +D E
Sbjct: 5 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
D Y A N LG AT A + V+
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 39.9 bits (92), Expect = 9e-05
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFID 560
P +P + + S + + K G+P PE+ W K+ + +S + +
Sbjct: 5 PHVKPYFT---KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 61
Query: 561 EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
E ++ I V D + YT A N+ G + L V
Sbjct: 62 EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 37.6 bits (86), Expect = 7e-04
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
WF+ + E T+ + +YTCKA N G A
Sbjct: 41 MWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 95
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 67.5 bits (164), Expect = 2e-14
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 144 APVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
AP I+ VTLEC G P P IKW K D + + ++ +
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQ 60
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
N EG Y C+A N G +++
Sbjct: 61 NVDFEDEGTYECEAENIKGRDTYQGRIIIH 90
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 49.4 bits (117), Expect = 3e-08
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 672 APLFIERF-EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
AP +F + + L +P P I W + + + + +L
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS------QTSKWLSSEPLL 57
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTV 763
++ D G Y+ A N G T+ R+ +
Sbjct: 58 HIQNV-DFEDEGTYECEAENIKGRDTYQGRIII 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 38.3 bits (88), Expect = 3e-04
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
E FG P P+I W K + + I +V D TY A N G
Sbjct: 26 ECFAFGNPVPQIKWRKL------DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG 79
Query: 589 STSLDLSLQV 598
+ + +
Sbjct: 80 RDTYQGRIII 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 35.2 bits (80), Expect = 0.003
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 417 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+ ++ + N EG Y C+A N G +
Sbjct: 49 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQG 85
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.3 bits (163), Expect = 2e-14
Identities = 15/85 (17%), Positives = 27/85 (31%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
P V + S+TL W P+ + + + + + + T +
Sbjct: 1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARI 60
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPAS 128
L Y+ +V A G G S
Sbjct: 61 DGLRPGMVYVVQVRARTVAGYGKFS 85
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.002
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
T ++ LR Y QV A G G
Sbjct: 50 MARSQTNTARIDGLRPGMVYVVQVRARTVAGYGK 83
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (165), Expect = 2e-14
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL--ESHDKDEFMVWNKIET 96
TL PG P +SV L W+PP + + + +
Sbjct: 16 TLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAP 75
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
++ Y T L + Y+FR+ A G G A+
Sbjct: 76 SARQYTATGLKPESVYLFRITAQTRKGWGEAA 107
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 601 YIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658
I + + V L PS QYT L+ +S Y F++ A+ G G A +V
Sbjct: 55 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVV 112
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (163), Expect = 2e-14
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY-VLESHDKDEFMVWNKIETTSTTYE 102
P P +P + + ++L W P Y + + + K + Y
Sbjct: 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 60
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPAS 128
V L +Y F+V A N+ G S
Sbjct: 61 VKNLRRSTKYKFKVIAYNSEGKSNPS 86
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.3 bits (163), Expect = 3e-14
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 39 TLLSAPGAPDTPEIVGR-SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
T PG P P + G+ S + W PP+D+G + + YV+E + W I +
Sbjct: 6 TCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSG 65
Query: 98 STT-YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+T + +L Y RV ++ G S ++V+ P
Sbjct: 66 ATREHLCDRLNPGCFYRLRVYCISDGGQSAVSE---SLLVQTPA 106
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (160), Expect = 4e-14
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
P P++ RS + ++W P +G + VT Y LE E + +YE+
Sbjct: 1 PDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLE-WGGVEGSMQICYCGPGLSYEI 58
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPAS 128
L+ Y RV A++ +G GP S
Sbjct: 59 KGLSPATTYYCRVQALSVVGAGPFS 83
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.1 bits (160), Expect = 5e-14
Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTV 201
P + G S C V P + W+KDD +K Y N T+
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+G YT +A N GT E L V
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.8 bits (149), Expect = 2e-12
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P FI + V E + +V AS P + W ++++ L S K + ++G + L +
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
+ D G+Y V A N G+ + V
Sbjct: 62 NRVKGD-DKGEYTVRAKNSYGTKEEIVFLNV 91
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.0 bits (100), Expect = 8e-06
Identities = 16/84 (19%), Positives = 27/84 (32%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+ + P ++W K+ E+ S + + I V
Sbjct: 8 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGD 67
Query: 575 DTSTYTVTATNAAGSTSLDLSLQV 598
D YTV A N+ G+ + L V
Sbjct: 68 DKGEYTVRAKNSYGTKEEIVFLNV 91
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (162), Expect = 1e-13
Identities = 23/135 (17%), Positives = 35/135 (25%), Gaps = 13/135 (9%)
Query: 26 SNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK 85
S + G LLS P +V L W PP + +
Sbjct: 3 SGSSGDEETKAFEALLSNIVKP---VASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 86 DEFMVWNK---------IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
E ++ + T + L +Y +V A G S + +
Sbjct: 60 YEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTL 119
Query: 137 KAPVDA-EAPVIQEP 150
D P I P
Sbjct: 120 SCEPDIPNPPRISGP 134
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.6 bits (156), Expect = 2e-13
Identities = 10/101 (9%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE--FMVWNKIETTST 99
P++V + L W+P + + + + + + ++
Sbjct: 6 MLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKD 65
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPV 140
+E+ L Y ++ + + G S + + ++ +
Sbjct: 66 QFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 106
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 2e-13
Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 9/189 (4%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
+ P P P V S S + L W+PP D +T Y++ + E +
Sbjct: 1 TNPSVPLDPISVSNSSSQIILKWKPPSDPN-GNITHYLVFWERQAE----DSELFELDYC 55
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSV-AGFQS 160
+ + ++ + + + ++ +++E + S F+
Sbjct: 56 LKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED 115
Query: 161 SVTLECVV---SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217
+ V S + + R N + + R +A
Sbjct: 116 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQAC 175
Query: 218 NEAGTAETS 226
N+ E
Sbjct: 176 NQDTPEERC 184
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 5e-08
Identities = 10/94 (10%), Positives = 23/94 (24%), Gaps = 1/94 (1%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
+ + + P+ G V + + +E + + +
Sbjct: 101 LKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEE-HRPFEKVVNKESLVI 159
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
+ L Y + A N YV +
Sbjct: 160 SGLRHFTGYRIELQACNQDTPEERCSVAAYVSAR 193
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (156), Expect = 3e-13
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 39 TLLSAP-GAPDTPEIVGRSDSSVTLHWRP-PQDDGHSPVTGYVLESHDK--DEFMVWNKI 94
TL P AP + R+ S+ +HW+P + +TGY + + +
Sbjct: 6 TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV 65
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD 141
T + + L EY FRVAA+ GTGPA+ ++ +D
Sbjct: 66 SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD 112
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629
S+ ++ + + A +T + Q+ GY I+ ++ + + + L +E
Sbjct: 19 SLEVRNSKSIMIHWQPPAPATQ---NGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIE 75
Query: 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673
L +EY F+V A G GP T+ ++ T + + P
Sbjct: 76 GLDRGTEYNFRVAALTINGTGPA--TDWLSAETFESDLDETRVP 117
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 64.3 bits (155), Expect = 3e-13
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTST------- 99
P P + SD SV L W P++D P+ + ++ + W
Sbjct: 3 PTPPNVTRLSDESVMLRWMVPRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 61
Query: 100 -------TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
T VT L +H Y FR+ AV + S+ + ++
Sbjct: 62 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 36.6 bits (83), Expect = 0.002
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 613 FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655
K + + +V +L+ + Y F++ A S E+ T
Sbjct: 57 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 99
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.8 bits (154), Expect = 5e-13
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD-------EFMVWNKIE 95
PG P I SVTL +RP DG + ++ +++E+ + E
Sbjct: 10 LPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNE 68
Query: 96 TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+ + EV L Y FR+ VN +GT P S +R +
Sbjct: 69 PDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 107
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (152), Expect = 5e-13
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE-FMVWNKIETTSTTYE 102
P AP +G +S+ ++ D G SP+ Y++ + ++ + S
Sbjct: 1 PSAPKLEGQMGEDGNSIKVNLIKQDD-GGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVM 59
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASH 129
+ L EY V A N G A+H
Sbjct: 60 LKSLDWNAEYEVYVVAENQQGKSKAAH 86
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 63.0 bits (152), Expect = 6e-13
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD---SLIKGRNITYENNVARFTVV 202
++ +P + S C G P P + W + S +T + F +
Sbjct: 2 ILTKP-RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ S EG Y+ N G E TL +Q
Sbjct: 61 SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 58.3 bits (140), Expect = 3e-11
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 734
+ + TV E + R P P++ W R + L +S + + E+
Sbjct: 2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61
Query: 735 ADSETDAGDYKVVATNELGSATHGARVTV 763
+ D G+Y VV N G +T+
Sbjct: 62 VQAS-DEGNYSVVVENSEGKQEAEFTLTI 89
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 44.8 bits (105), Expect = 2e-06
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
+S + + G P P ++W++ G ++ S ++ + ST I SV +D
Sbjct: 7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 66
Query: 576 TSTYTVTATNAAGSTSLDLSLQV 598
Y+V N+ G + +L +
Sbjct: 67 EGNYSVVVENSEGKQEAEFTLTI 89
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (155), Expect = 7e-13
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRP-PQDDGHSPVTGY------VLESHDKDEFMVWNKIET 96
AP + + + +HW P P + GY S ++ + KI T
Sbjct: 15 MVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILT 74
Query: 97 TS---TTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
T + L Y V VN G GPAS
Sbjct: 75 FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 9e-05
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 614 TKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658
K+ T S + L S Y V N G GP + +
Sbjct: 70 KKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVF 114
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 63.5 bits (153), Expect = 7e-13
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 143 EAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGR------------- 188
P++Q L + + V C V P I+W K +
Sbjct: 3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62
Query: 189 ---NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
T + + + N + G YTC A N G + S L V
Sbjct: 63 AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 54.6 bits (130), Expect = 9e-10
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 673 PLFIERF-EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-------------PK 718
P+ + G + + KV + P I W ++ + S
Sbjct: 5 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64
Query: 719 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
D E +L ++ E DAG+Y +A N +G + H A +TV
Sbjct: 65 GVNTTDKEIEVLYIRNVTFE-DAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 44.2 bits (103), Expect = 4e-06
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI-------------TDSKACRIFIDEE 562
+ V + K + +P I W+K+ + A D+E
Sbjct: 13 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKE 72
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ I +V D YT A N+ G + L VL
Sbjct: 73 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.0 bits (152), Expect = 7e-13
Identities = 15/83 (18%), Positives = 31/83 (37%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTK 105
AP + R+ +S+ L W + + Y + ++ ++ K +T +T
Sbjct: 3 APKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTD 62
Query: 106 LTTKHEYMFRVAAVNAIGTGPAS 128
L EY ++AV +
Sbjct: 63 LVPGTEYGVGISAVMNSKQSIPA 85
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 588 GSTSLDLSLQ-----VLGYIIQQQEKNSLKFTK--VATLDPSTLQYTVENLRDKSEYYFQ 640
+TSLDL Y + ++ + V T + T+ +L +EY
Sbjct: 13 TATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVG 72
Query: 641 VFAENSVGLGPEATTE 656
+ A + AT
Sbjct: 73 ISAVMNSKQSIPATMN 88
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.3 bits (150), Expect = 1e-12
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY---ENNVARFT 200
P I + + LE G P P W DS +++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + G Y K NE G E ++VQ
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.1 bits (113), Expect = 1e-07
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P + + +K T L +P P+ W + +P+ +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
D+G+YK+ NELG V V
Sbjct: 62 FPS-AKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.6 bits (91), Expect = 1e-04
Identities = 16/86 (18%), Positives = 31/86 (36%)
Query: 513 SNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV 572
+ + ++ +EV + G P P +W + + + T++I S
Sbjct: 7 TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAK 66
Query: 573 RADTSTYTVTATNAAGSTSLDLSLQV 598
RAD+ Y + N G + V
Sbjct: 67 RADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.2 bits (150), Expect = 1e-12
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
+ + + ++V + + L W + Y L ++DE
Sbjct: 1 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV---LEPRV 57
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+TKL Y+ RV + +G GP S
Sbjct: 58 LLTKLQPDTTYIVRVRTLTPLGPGPFS 84
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 61.6 bits (148), Expect = 3e-12
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT---STT 100
P AP I +HW D+ SP+ Y ++ + W+ + +
Sbjct: 6 PNAPKLTGITC-QADKAEIHWEQQGDN-RSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
V +++ Y FRV A N IG P S ++ +
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.2 bits (147), Expect = 3e-12
Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDD-GHSPVTGYVLESHDKDEFMVWNKIETT----S 98
P +++++ L W ++P+ G+ + D + +
Sbjct: 2 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ ++ L + Y ++ N G S
Sbjct: 62 YWHSISHLQPETSYDIKMQCFNEGGESEFS 91
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.6 bits (83), Expect = 0.002
Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP-----EATTE 656
++ +++ +L+ ++ Y ++ N G T+
Sbjct: 54 KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETK 99
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 3e-12
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD--EFM 89
A TT + ++P T ++ ++W+PP + + +TGY++ E
Sbjct: 2 AHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA-NGKITGYIIYYSTDVNAEIH 60
Query: 90 VWNKIETTS--TTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
W T+++ +LT Y F++ A N+ G GP S
Sbjct: 61 DWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMS 101
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTK--VATLDPSTLQYT 627
+VV + T+ + + ++ GYII + + + + + L +
Sbjct: 19 TVVSKEGKPKTIIVN---WQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 75
Query: 628 VENLRDKSEYYFQVFAENSVGLGP 651
++ L + YYF++ A NS G+GP
Sbjct: 76 IQELTLDTPYYFKIQARNSKGMGP 99
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 4e-12
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE-----NNVARFTVVNCSESSEGRYTC 214
V L C V G+ PDI+W KD ++++ + Y + + ++ + S GRY C
Sbjct: 12 QPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWC 71
Query: 215 KATNEAGTAET-SCTLLVQG 233
+ + T + L V+G
Sbjct: 72 QVEDGGETEISQPVWLTVEG 91
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 2e-07
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-LELKEADSE 738
+ TV + ++L V+ P I W ++ + + + ++ I ++
Sbjct: 4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63
Query: 739 TDAGDYKVVATNELGSA-THGARVTV 763
+DAG Y + + + +TV
Sbjct: 64 SDAGRYWCQVEDGGETEISQPVWLTV 89
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 2e-04
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNA 586
G P+I W+K+GA + + I + E+ +++ SV R+D Y +
Sbjct: 17 NCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG 76
Query: 587 AGS-TSLDLSLQVLG 600
+ S + L V G
Sbjct: 77 GETEISQPVWLTVEG 91
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 8/57 (14%), Positives = 23/57 (40%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
W + + ++ ++ + ++ + S GRY C+ + T ++ +W
Sbjct: 30 WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW 86
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 58.8 bits (141), Expect = 2e-11
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 144 APVIQEPLKDSVA---GFQSSVTLECVVSGVPTPDIKWYKDDS--LIKGRNITYENNVAR 198
PV +E ++ + VTL C P +W + + + +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
G Y C ATN GT S ++
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTV-VSREASLR 96
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 50.3 bits (119), Expect = 2e-08
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 672 APLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
P+F E+ E + + L + +A+P + W N L P R +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62
Query: 729 ILELKEADSETDAGDYKVVATNELGSAT 756
L + DAG Y+ VATN G+
Sbjct: 63 -LVISNPVKAKDAGSYQCVATNARGTVV 89
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.5 bits (91), Expect = 1e-04
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEET 563
+QPA L +++++ + P W NG E+ R +
Sbjct: 9 EQPAHTLFPEGSAEEKVTL------TCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 564 STIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQ 597
I V D +Y ATNA G+ S + SL+
Sbjct: 63 LVI-SNPVKAKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 35.3 bits (80), Expect = 0.004
Identities = 9/54 (16%), Positives = 14/54 (25%)
Query: 400 WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
+ + + + G Y C ATN GT +R
Sbjct: 39 YRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.7 bits (143), Expect = 2e-11
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW 91
S+ + + P P + + S+ L+W Q + L ++E
Sbjct: 4 GSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKM 63
Query: 92 NKIET----TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ +T + V L + Y FR+ + G S
Sbjct: 64 HSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYS 104
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (141), Expect = 2e-11
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK--DEFMVWNKIETTST 99
+PE + L W P Q H + + + + + +
Sbjct: 5 MLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL 64
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
YE+ L Y ++ + G S
Sbjct: 65 QYELCGLLPATAYTLQIRCIRWPLPGHWS 93
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.4 bits (140), Expect = 2e-11
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTK 105
+P + S++S++L W P+ Y + + T+Y +T
Sbjct: 3 SPRDLMVTASSETSISLIWTKA----SGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTD 58
Query: 106 LTTKHEYMFRVAAVNAIGTGPAS 128
L EY+ + A S
Sbjct: 59 LEPGAEYIISITAERGRQQSLES 81
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.6 bits (81), Expect = 0.002
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 619 LDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+ YT+ +L +EY + AE E+T +
Sbjct: 47 VPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 84
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.3 bits (142), Expect = 3e-11
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM------------ 89
S PGAP T I ++ + L W PP + Y + M
Sbjct: 6 SGPGAPSTVRIS-KNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRI 63
Query: 90 -----VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ T++ +FR++A N G GPA+
Sbjct: 64 YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPAT 107
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.004
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
L + + F++ A+N G GP
Sbjct: 74 TAGQLANAHIDYTSRPAIVFRISAKNEKGYGP 105
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 57.6 bits (138), Expect = 4e-11
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTK 105
P E+ ++++++L WR P + Y L +I ST++ +
Sbjct: 2 NPKDLEVSDPTETTLSLRWRRP----VAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRG 57
Query: 106 LTTKHEYMFRVAAVNAIGTGPAS 128
L EY + A +
Sbjct: 58 LDAGTEYTISLVAEKGRHKSKPT 80
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 5e-11
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
GAP P + +W PP Y ++ + E + +++ + E+T
Sbjct: 3 GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESE---AHLLDSKVPSVELT 59
Query: 105 KLTTKHEYMFRVAAVNAIGTGPAS 128
L +Y +V A A G GP S
Sbjct: 60 NLYPYCDYEMKVCAYGAQGEGPYS 83
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 6e-11
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK--DEFMVWNKIETTSTTYEV 103
AP + + +S+ + W+PP + +TGY+++ V + T +
Sbjct: 3 APSNLRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATI 58
Query: 104 TKLTTKHEYMFRVAAVNAIGTGP 126
T L EY V A+
Sbjct: 59 TGLEPGTEYTIYVIALKNNQKSE 81
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 7e-06
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 586 AAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
A SL +S Q + GYII+ ++ S V P + T+ L +EY
Sbjct: 11 ATTPNSLLVSWQPPRARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIY 70
Query: 641 VFAENSVGLGPEATTE 656
V A +
Sbjct: 71 VIALKNNQKSEPLIGR 86
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 7e-11
Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 2/83 (2%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV--WNKIETTSTTYEVTKLTTKHEYMF 114
+ + ++W T V K+ + I +
Sbjct: 13 NMNPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWV 72
Query: 115 RVAAVNAIGTGPASHNTRYVVVK 137
RV A + + + V +
Sbjct: 73 RVKARVGQKESAYAKSEEFAVCR 95
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 9e-11
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 44 PGAPDTPEI--VGRSDSSVTLHWRPPQ--DDGHSPVTGYVLESHDKDEFMVWNKIETTST 99
P P+ V + + + W+ P D S + L + + T
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVK 137
+ +T EY+ +VAA + G S +
Sbjct: 68 AHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHAT 104
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.9 bits (136), Expect = 9e-11
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203
V E + + VT C S P + W + + N + T+ N
Sbjct: 3 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--LTIRN 60
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLLVQ 232
S G Y C +N + + TL VQ
Sbjct: 61 VQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.6 bits (104), Expect = 2e-06
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
+ +E ++V+ + + K+ SPA ++VW R + L S N IL
Sbjct: 3 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-----NGILT 57
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
++ G Y +N A + V
Sbjct: 58 IRNVQPSDA-GTYVCTGSNMFAMDQGTATLHV 88
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
P + W + S+A + I +V +D TY T +N
Sbjct: 29 KSPAYTLVWTRLHNGKLPSRAMDFN-----GILTIRNVQPSDAGTYVCTGSNMFAMDQGT 83
Query: 594 LSLQV 598
+L V
Sbjct: 84 ATLHV 88
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 1e-10
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 6/91 (6%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLES------HDKDEFMVWNKIETT 97
P AP + ++ L W P + D +
Sbjct: 2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 61
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
S + L + Y RV A S
Sbjct: 62 SLRIAASTLKSGISYRARVRAWAQAYNTTWS 92
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.9 bits (136), Expect = 1e-10
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 44 PGAPDTPEI----VGRSDSSVTLHWRPP---QDDGHSPVTGYVLESHDKDEFMVWNKIET 96
P P + + + + + W PP Y + ++
Sbjct: 3 PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG 62
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
T ++V L +Y+ + G V +
Sbjct: 63 HQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.5 bits (135), Expect = 1e-10
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTK 105
AP + + +S++ W PP + + + S++ V+
Sbjct: 2 APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEIN--LAPDSSSVVVSG 59
Query: 106 LTTKHEYMFRVAAVNAIGTGPAS 128
L +Y V A+ T +
Sbjct: 60 LMVATKYEVSVYALKDTLTSRPA 82
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 7e-05
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 581 VTATNAAGSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ T TSL +Q+ GY ++ K K L P + V L +
Sbjct: 6 LKFTQV-TPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVAT 64
Query: 636 EYYFQVFAENSVGLGPEATTELVAL 660
+Y V+A A + L
Sbjct: 65 KYEVSVYALKDTLTSRPAQGVVTTL 89
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 3e-10
Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 44 PGAPDTPEI--VGRSDSSVTLHWRP-PQDDGHSPVTGYVLESHDKD-EFMVWNKIETTST 99
P P + V R+ +++ W+ + + L + + ++
Sbjct: 2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQH 61
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + ++ ++ A G G S
Sbjct: 62 HCVIHDAWSGLRHVVQLRAQEEFGQGEWS 90
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (133), Expect = 3e-10
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 33 SATTKVTLLSAPGAPDTPEIVGRS--DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV 90
SA T + L P+ P + +S+ + W PP++ V GY +
Sbjct: 7 SAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQ 65
Query: 91 WNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
K++ Y + L Y+ + A N +G G + +
Sbjct: 66 TIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYES 106
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.7 bits (133), Expect = 4e-10
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 44 PGAPDTPE-IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--------NKI 94
P +P ++ + +S+ W P + H P + + + + K
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ + L V A N +G+ +
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESP 97
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 4e-10
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD-----DSLIKGRNITYENNVARFTV 201
+ + L+D+ A V LEC VS ++KW+K+ I E +
Sbjct: 3 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+++ Y+ T ++S L V K
Sbjct: 62 EGATKADAAEYSVMTTG----GQSSAKLSVDLK 90
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 1e-06
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENIILE 731
+ ++ E+ T + L +V + ++ WF+N + ++ PK R +G+ IL
Sbjct: 2 MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60
Query: 732 LKEADSETDAGDYKVVATNELGSAT 756
++ A ++ DA +Y V+ T SA
Sbjct: 61 IEGA-TKADAAEYSVMTTGGQSSAK 84
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 4e-04
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVV 572
L+ + ++E + + W KNG EI RI ++ + + I
Sbjct: 7 LEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 65
Query: 573 RADTSTYTVTATNAAGSTSL 592
+AD + Y+V T S L
Sbjct: 66 KADAAEYSVMTTGGQSSAKL 85
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESAR--HIITSRGTQRKL 363
+ +L T + E+S D VKW K G+EI + + I G + L
Sbjct: 1 IMVTKQLEDTT-AYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 59
Query: 364 VIKRVTQDDETDIGVLALNVKSVSKL 389
+I+ T+ D + V+ +S +KL
Sbjct: 60 IIEGATKADAAEYSVMTTGGQSSAKL 85
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.8 bits (133), Expect = 4e-10
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 12/104 (11%)
Query: 145 PVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIK-----------GRNITY 192
P S + L C G P + W+KD + + T
Sbjct: 3 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEI 236
+ + G Y C+A N GTA S + E+
Sbjct: 63 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 106
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.4 bits (119), Expect = 3e-08
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P +V L SP WF++ +L++ K+ +
Sbjct: 3 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62
Query: 732 LKEADSET-------DAGDYKVVATNELGSATHGARVTVDVEKV 768
++ D+G+Y A N G+A +D ++
Sbjct: 63 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 106
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 3e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEET--------STIAIYSVVRADTSTYTVTATN 585
G P E SW K+G + + A + + + V D+ Y A N
Sbjct: 29 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN 88
Query: 586 AAGS--TSLDLSLQV 598
G+ S +
Sbjct: 89 GYGTAMRSEAAHMDA 103
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.9 bits (84), Expect = 0.001
Identities = 11/57 (19%), Positives = 16/57 (28%)
Query: 397 GGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
G + K + T + + G Y C+A N GTA
Sbjct: 41 GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSE 97
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 4e-10
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--------GRNITYENN 195
AP I + + V G P P ++W+ + +++ +
Sbjct: 4 APTITFLESPTSDHH---WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ N + + G YT A NE G E + G
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 3e-07
Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 12/109 (11%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN--- 727
I E T I VK +P P++ WF N L S N
Sbjct: 2 HFAPTITFLESPTSDHHWCI--PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 728 --IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
L+L + GDY ++A NE G +G P I+
Sbjct: 60 YHGCLQLDNPTHM-NNGDYTLIAKNEYGKDEKQISAHF----MGWPGID 103
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 3e-06
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTY 579
W + G P+P + W NGA + +SK I + + + + Y
Sbjct: 18 HWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 77
Query: 580 TVTATNAAGSTSLDLSLQVLG 600
T+ A N G +S +G
Sbjct: 78 TLIAKNEYGKDEKQISAHFMG 98
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 5e-10
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
AP E + + L W P GY+L H + T+++
Sbjct: 1 GLEAPRDLEAKEVTPRTALLTWTEP----PVRPAGYLLSFHTPGGQTQEILLPGGITSHQ 56
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
+ L Y R+ A+ P +
Sbjct: 57 LLGLFPSTSYNARLQAMWGQSLLPPVSTS 85
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 4/78 (5%)
Query: 581 VTATNAAGSTSLDLSLQVLGYIIQQQE---KNSLKFTKVATLDPSTLQYTVENLRDKSEY 637
+ A + L+ T+ L + + L + Y
Sbjct: 8 LEAKEV-TPRTALLTWTEPPVRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSY 66
Query: 638 YFQVFAENSVGLGPEATT 655
++ A L P +T
Sbjct: 67 NARLQAMWGQSLLPPVST 84
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 54.5 bits (130), Expect = 5e-10
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
G+P +++S T+ W PP+ S Y ++ + T ++
Sbjct: 2 GSPKGISFSDITENSATVSWTPPRSRVDSYRVSY---VPITGGTPNVVTVDGSKTRTKLV 58
Query: 105 KLTTKHEYMFRVAAVNAIGTGPA 127
KL +Y + +V
Sbjct: 59 KLVPGVDYNVNIISVKGFEESEP 81
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 37.6 bits (86), Expect = 5e-04
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 581 VTATNAAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
++ ++ S +S V Y + V T+D S + + L
Sbjct: 7 ISFSDI-TENSATVSWTPPRSRVDSYRVSYVPITGGTPNVV-TVDGSKTRTKLVKLVPGV 64
Query: 636 EYYFQVFAENSVGLGPEATTE 656
+Y + + +
Sbjct: 65 DYNVNIISVKGFEESEPISGI 85
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 5e-10
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE---FMVWNKIETTST 99
A ++ V L W+ P++ V V DE K
Sbjct: 4 ADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 63
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVV 135
+ L+ + Y R+ A + G G + T + V
Sbjct: 64 GCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYV 98
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (131), Expect = 6e-10
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 11/102 (10%)
Query: 145 PVIQEPLKDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDS----------LIKGRNITYE 193
P S A + L C G P + W+KD +
Sbjct: 3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
S S G Y+C+A N GT TS + ++ E
Sbjct: 63 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 5e-08
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P + L + SP WF++ + ++PK F + +L
Sbjct: 3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62
Query: 732 LKEAD------SETDAGDYKVVATNELGSATHGARVTVDV 765
+ S +D G+Y A N G+ V ++
Sbjct: 63 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 1e-04
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFI-------DEETSTIAIYSVVRADTSTYTVTATNA 586
G P E +W K+G + + + T + + +DT Y+ A N
Sbjct: 29 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 88
Query: 587 AGSTSLDLSLQV 598
G+ ++++
Sbjct: 89 YGTPMTSNAVRM 100
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 54.7 bits (130), Expect = 6e-10
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE---TT 97
L P+ EI S+++V LHW D +TGY + K
Sbjct: 4 LDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAH 63
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ ++++ L T Y F++ + +A S
Sbjct: 64 ARSFKIAPLETATMYEFKLQSFSAASASEFS 94
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 6e-10
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTK 105
P S+ + W PQ Y E ++ + T E+
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHE--LFPAPDGEEDTAELQG 61
Query: 106 LTTKHEYMFRVAAVNAIGTGPASHNT 131
L EY V A++ T
Sbjct: 62 LRPGSEYTVSVVALHDDMESQPLIGT 87
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 581 VTATNAAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ T+ S+ ++ + V Y + D ++ LR S
Sbjct: 8 LAFTDV-DVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGS 66
Query: 636 EYYFQVFAENSVGLGPEATTE 656
EY V A +
Sbjct: 67 EYTVSVVALHDDMESQPLIGT 87
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 6e-10
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNI----------TYENNVARFTVVNCSESSEGR 211
+ V G P P ++W + S++ + + + + G
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 212 YTCKATNEAGTAETSCTLLVQGK 234
YT A N G A S
Sbjct: 78 YTLLAANPFGQASASIMAAFMDN 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 9e-07
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI-------DEETSTIAIYSVVRADTST 578
W + G P P + W+ NG+ + ++ + + +
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 579 YTVTATNAAGSTSLDLSLQVLG 600
YT+ A N G S + +
Sbjct: 78 YTLLAANPFGQASASIMAAFMD 99
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 3e-06
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-------DGENIILELKEADSETDAGDY 744
+ V PAPS+ W N L + F + L L + + G+Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNY 78
Query: 745 KVVATNELGSATHGARVTV 763
++A N G A+
Sbjct: 79 TLLAANPFGQASASIMAAF 97
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 55.0 bits (131), Expect = 7e-10
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLESHDKDEFMVWNKI---ETTST 99
PD G +++ + W P + + ++P Y + W +
Sbjct: 5 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 64
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ T +Y+ +V A+N G +
Sbjct: 65 NIVIADQPTFVKYLIKVVAINDRGESNVA 93
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 601 YIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659
Y+ +++ + + D + + +Y +V A N G A E+V
Sbjct: 41 YVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVG 99
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 7e-10
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD--EFMVWNKIETTSTTYEVTKLTT 108
E+V + +S+ + W P V Y + + + + + +T ++ L
Sbjct: 4 EVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKP 59
Query: 109 KHEYMFRVAAVNAIGTGPAS 128
+Y V AV G PAS
Sbjct: 60 GVDYTITVYAVTGRGDSPAS 79
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 1e-06
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 586 AAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
AA TSL +S V Y I E + T+ S T+ L+ +Y
Sbjct: 7 AATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTIT 66
Query: 641 VFAENSVGLGPEATTELVALAT 662
V+A G P ++ +
Sbjct: 67 VYAVTGRGDSPASSKPISINYR 88
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 9e-10
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 44 PGAPDTPEI--VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS--- 98
P P + S + L W P + + E T+
Sbjct: 5 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+++ V L EY+FR+ + G G S + D
Sbjct: 65 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 108
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 1e-09
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT-----S 98
P +P + V S+ + + P+ G P+ Y E E + +K
Sbjct: 3 PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 61
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ L + Y R+AA+N G G S
Sbjct: 62 GIVTIVGLKPETTYAVRLAALNGKGLGEIS 91
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 2e-09
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
P AP+ + S+S + L+W + ++++ + + + +
Sbjct: 3 PWAPENLTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVDYRHKFSL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASH 129
+ + Y FRV + G A H
Sbjct: 60 PSVDGQKRYTFRVRSRFNPLCGSAQH 85
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 2e-09
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 11/98 (11%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR----------NITYEN 194
P ++ + L C VP + + + + ++
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 195 NVARFTVVN-CSESSEGRYTCKATNEAGTAETSCTLLV 231
+ + N E+ G+Y C T+ G+ + TL V
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 3e-08
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-------PLLSSPKKREIFDG 725
P + + E T L+ K ++ P + + S +
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L ++ + E D G Y+ T+ GS + V
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 2e-09
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 8/98 (8%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKD-------EFMVWNKIET 96
P P S + L W P + + +T Y + +
Sbjct: 3 PSEPGRLAFNVVSSTVTQLSWAEPAET-NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNP 61
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+ + L Y + V A N G GP +
Sbjct: 62 KNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINL 99
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Score = 52.5 bits (125), Expect = 2e-09
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
AP AP ++ SS+TL W D+ VTGY + T TT
Sbjct: 3 APTAPTNLASTAQTTSSITLSWTASTDNV--GVTGYDVY------NGTALATTVTGTTAT 54
Query: 103 VTKLTTKHEYMFRVAAVNAIG-TGPAS 128
++ L Y F V A +A G AS
Sbjct: 55 ISGLAADTSYTFTVKAKDAAGNVSAAS 81
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 3e-09
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTSTTYEV 103
+P + + +S T+HW P+ + +TGY + +++ + + +
Sbjct: 3 SPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITL 58
Query: 104 TKLTTKHEYMFRVAAVNAIGTGP 126
T LT EY+ + A+N P
Sbjct: 59 TNLTPGTEYVVSIVALNGREESP 81
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 3e-07
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 581 VTATNAAGSTSLDLSLQ-----VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKS 635
+ ++ + S + + GY I+ ++ + + S T+ NL +
Sbjct: 7 IDFSDI-TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGT 65
Query: 636 EYYFQVFAENSVGLGPEATTE 656
EY + A N P +
Sbjct: 66 EYVVSIVALNGREESPLLIGQ 86
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 3e-09
Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 4/89 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSP---VTGYVLESHDKDEF-MVWNKIETTST 99
P + S ++ + W H Y + + T+
Sbjct: 2 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+Y VT L Y F V + S
Sbjct: 62 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS 90
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 4e-09
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 15/107 (14%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYKDDS------------LI 185
D + +D S+T V+G P +KW+K L
Sbjct: 1 DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 186 KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + + + + + G Y C+ + + ++ L V
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRN---------NKPLLSSPKK 719
LF+ R ++ V G+I A+V + P + WF+ + L
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 720 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L + +A G Y+ + + +TV
Sbjct: 64 DRASKVYLFELHITDAQPA-FTGGYRCEVSTKDKFDCSNFNLTV 106
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 12/96 (12%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFP---RPEISWMKN---------GAEITDSKACRIFIDEE 562
+ ++V + G P + W K G + +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ I A T Y + + +L V
Sbjct: 71 LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.002
Identities = 5/61 (8%), Positives = 16/61 (26%)
Query: 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450
G + L + + + + + + G Y C+ + +
Sbjct: 40 KWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDC 99
Query: 451 T 451
+
Sbjct: 100 S 100
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 4e-09
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTSTTYEV 103
P ++ + W PP +T +++ I + +
Sbjct: 3 PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGP 126
T L EY+ V++V
Sbjct: 60 TNLLPGTEYVVSVSSVYEQHEST 82
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 1e-05
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 581 VTATNAAGSTSLDLSLQ------VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
+ TN G ++ ++ + ++++ + + ++ PS + NL
Sbjct: 7 LRFTNI-GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 65
Query: 635 SEYYFQVFAENSVGLGPEATTE 656
+EY V +
Sbjct: 66 TEYVVSVSSVYEQHESTPLRGR 87
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 5e-09
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 143 EAPVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVA 197
++ Q+ L+ + + + L ++ ++KW K+ I+ Y
Sbjct: 4 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
T+ CS + + Y C E + S L V+
Sbjct: 63 TLTISQCSLADDAAYQCVVGGE----KCSTELFVK 93
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 9e-06
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 671 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENI 728
++ F ++ E V + IRL ++ A + W +N + + S K G
Sbjct: 4 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62
Query: 729 ILELKEADSETDAGDYKVVATNELGSAT 756
L + + D Y+ V E S
Sbjct: 63 TLTISQCSLA-DDAAYQCVVGGEKCSTE 89
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 6e-04
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHI-ITSR 357
+ K + A F KL V VEL+ D +VKWLK G+EI+ S S
Sbjct: 1 DEKKSTA--FQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESI 58
Query: 358 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390
G +R L I + + D+ + K ++L
Sbjct: 59 GAKRTLTISQCSLADDAAYQCVVGGEKCSTELF 91
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.8 bits (123), Expect = 5e-09
Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 2/89 (2%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE--NNVARFTVV 202
+ + + C V P I W + + + +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLV 231
++ EG Y C+ A + V
Sbjct: 62 GIKKTDEGTYRCEGRILARGEINFKDIQV 90
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (111), Expect = 2e-07
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
+F + KE ++ V +S P+I+W + ++ R I N + +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-I 60
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVDV 765
+ D G Y+ + + V V
Sbjct: 61 RGIKKT-DEGTYRCEGRILARGEINFKDIQVIV 92
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
Q + P I W G ++ K R + I + + D
Sbjct: 9 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGIKKTD 67
Query: 576 TSTYTVTATNAAGSTSLDLSLQV 598
TY A +QV
Sbjct: 68 EGTYRCEGRILARGEINFKDIQV 90
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 6e-09
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 32/104 (30%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRN------------------------------ 189
+ + L+ +SG P P + W K +
Sbjct: 25 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 84
Query: 190 --ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ + + FTV + EG YT N G + + T+ V
Sbjct: 85 VRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 34/131 (25%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVK--SQWKVEVKYFGFPRPEISWMKNGAEITDSKA--- 554
Q PP+ I L + V ++ +++V G P P + W K + + A
Sbjct: 2 QEPPK---IHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPA 58
Query: 555 --------------------------CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
R+ ++ S + + D YTVT N G
Sbjct: 59 PDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG 118
Query: 589 STSLDLSLQVL 599
++L+++V+
Sbjct: 119 EDQVNLTVKVI 129
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 30/110 (27%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--------------------- 721
V +RL + PAP+++W + +P +
Sbjct: 20 VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79
Query: 722 --------IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ I ++ A+ E D G Y V N +G V V
Sbjct: 80 ETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVNLTVKV 128
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.001
Identities = 19/149 (12%), Positives = 33/149 (22%), Gaps = 34/149 (22%)
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
++ ++P +V V +S P V W K + ++
Sbjct: 9 LDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDS 68
Query: 365 IKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVAR 424
W K + + +
Sbjct: 69 D---------------------------------EWVFDKKLLCETEGRVRVETTKDRSI 95
Query: 425 FTVVNCSESSEGRYTCKATNEAGTAETRT 453
FTV + EG YT N G +
Sbjct: 96 FTVEGAEKEDEGVYTVTVKNPVGEDQVNL 124
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 6e-09
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTSTTY 101
P P + + W ++ T + L+S K +T ++
Sbjct: 4 PEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPTSCT 61
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
V A NA+G + H
Sbjct: 62 VDYSTVYFVNIEVWVEAENALGKVTSDHIN 91
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.5 bits (122), Expect = 8e-09
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE--SHDKDEFMVWNKIETTS 98
+ P + SD+ + W PP + V +L+ + +++
Sbjct: 1 IPVIDGPTQILVRDVSDTVAFVEWTPP----RAKVDFILLKYGLVGGEGGKTTFRLQPPL 56
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ Y V L Y ++AV AS
Sbjct: 57 SQYSVQALRPGSRYEVSISAVRGTNESDAS 86
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 600 GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+++ L P QY+V+ LR S Y + A ++T+
Sbjct: 33 FILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQ 89
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 51.1 bits (121), Expect = 1e-08
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-----ITYENNVARF 199
PV Q KD +A + C+ P ++K+ + G + R
Sbjct: 4 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 63
Query: 200 TVVNCSESSEGRYTCKATNEAGTAET-SCTLLV 231
EG YTC+ N G + S L V
Sbjct: 64 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGENII 729
P ++ ++ K + ++P +F+N K + +P+ R
Sbjct: 5 VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62
Query: 730 LELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
L K E + G Y N +G H ++TV
Sbjct: 63 LLFKTTLPEDE-GVYTCEVDNGVGKPQKHSLKLTV 96
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-------GRNITYENNVA 197
P + + + +E VV G P P + W + ++ E +
Sbjct: 6 PRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 62
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + G YT A N GTA + +
Sbjct: 63 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF----DGE 726
P + EE ++ + I V+ +P P++ W N +PL S + +
Sbjct: 3 YYPPRVVSLEEPELRLEHCIEF--VVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 60
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L + + G+Y ++A N LG+A
Sbjct: 61 EGCLLFNKPTHY-NNGNYTLIAKNPLGTANQTINGHF 96
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFI----DEETSTIAIYSVVRADTSTYTVTA 583
+E G P P + W+ NG + +SK + + + + YT+ A
Sbjct: 22 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81
Query: 584 TNAAGSTSLDLSLQVLG 600
N G+ + ++ L
Sbjct: 82 KNPLGTANQTINGHFLK 98
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.003
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD 48
E L K + G+YT+ N LG A+ T L P D
Sbjct: 58 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVD 104
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 2e-08
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 7/109 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD------ 724
P I + + ++ ++++P P + + + +L S
Sbjct: 5 NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64
Query: 725 -GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
G L + Y A N GS T R+ ++ PS
Sbjct: 65 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 2e-07
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY----------KDDS 183
+ V P P+I + A ++C + P PD +
Sbjct: 2 LTVNGP-----PIISST-QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 55
Query: 184 LIKGRNITYENNVARFTVVNCSESSEGR-YTCKATNEAGTAETSCTLLVQGKEI 236
T E ++ T+ N + Y C A N G+ L QG E+
Sbjct: 56 YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 2e-08
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
AP E+ +D++ + W P + Y D + Y +
Sbjct: 2 LDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYG--IKDVPGDRTTIDLTEDENQYSI 59
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNT 131
L EY + + + + T
Sbjct: 60 GNLKPDTEYEVSLISRRGDMSSNPAKET 87
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.3 bits (80), Expect = 0.004
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 588 GSTSLDLS-----LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642
T+ ++ ++ G + K+ L QY++ NL+ +EY +
Sbjct: 14 TDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLI 73
Query: 643 AENSVGLGPEATTE 656
+ A
Sbjct: 74 SRRGDMSSNPAKET 87
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 3e-08
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 30 GQASATTKV-TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDD-GHSPVTGYVLESHDKDE 87
+S T V T + P P + +D+ V L+W + S VTGY + +
Sbjct: 3 SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVF--YRTS 60
Query: 88 FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
++ T+ T L K +Y+ V A G G +S
Sbjct: 61 SQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSS 101
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-08
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKR-----EIFDG 725
L+I+R E ++ L VK P + W + N + R E +
Sbjct: 3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62
Query: 726 ENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763
IL + D G Y+ A + +H + V
Sbjct: 63 SFFILHFEPVLPN-DNGSYRCSANFQSNLIESHSTTLYV 100
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-06
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIKGRNITY--------E 193
+ + + + LEC V P + W K + +
Sbjct: 2 DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQGKEIK 237
+ + G Y C A ++ E+ S TL V ++K
Sbjct: 62 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV--TDVK 104
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 508 IKLVDSNLKSQRLSVKSQWKVEVKYFGFP-RPEISWMKNGAEITDSKACRIFI-----DE 561
++L + +++E RP ++W K R +
Sbjct: 3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62
Query: 562 ETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
+ V+ D +Y +A +
Sbjct: 63 SFFILHFEPVLPNDNGSYRCSANFQSNLIE 92
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-08
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI------KGRNITYENNV 196
P +++ T +C G + + + + + + +
Sbjct: 1 RTPHF-LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETS-CTLLVQ 232
A F VVN ++ G+Y C E G ++ L+V+
Sbjct: 60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 6e-07
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 6/97 (6%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKPLLSSPKKREIFDGEN 727
+ P F+ R + V + + + K
Sbjct: 1 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59
Query: 728 IILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 763
+ DAG Y+ + E G + A + V
Sbjct: 60 ASFNVVNTTKR-DAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 8/90 (8%), Positives = 21/90 (23%), Gaps = 4/90 (4%)
Query: 513 SNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE---ITDSKACRIFIDEETSTIAIY 569
+++ ++ + G G + + ++ +
Sbjct: 6 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 65
Query: 570 SVVRADTSTYTVTATNAAGS-TSLDLSLQV 598
+ + D Y G S L V
Sbjct: 66 NTTKRDAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.002
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRT 453
W +D L + + + +A F VVN ++ G+Y C E G +
Sbjct: 36 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY 90
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-08
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPV------TGYVLESHDKDEFMVWNKIET 96
+ + + SS+ L+W P S + + LE H + +
Sbjct: 3 SRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPG 62
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
T + + L + Y + + + T
Sbjct: 63 TRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGT 97
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 5e-08
Identities = 13/113 (11%), Positives = 32/113 (28%), Gaps = 13/113 (11%)
Query: 39 TLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL---ESHDKDEFMVWNKIE 95
L P ++ + ++V + W + + GY + ++ W ++
Sbjct: 13 ELGDVLVRLHNPVVL--TPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLD 68
Query: 96 TTS---TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145
+ + L Y +V G S V+ ++
Sbjct: 69 AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDS---ESKTVRTTEESGPS 118
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 5e-08
Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTK 105
P + +++++T+ WR + V + +Y +T
Sbjct: 4 PPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIK---PDVRSYTITG 60
Query: 106 LTTKHEYMFRVAAVNAIGTGPAS 128
L +Y + +N
Sbjct: 61 LQPGTDYKIYLYTLNDNARSSPV 83
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 7e-08
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 4/104 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEV 103
P P + ++ LHW+PPQ+ + + Y +
Sbjct: 1 PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPGSA----VDYPL 56
Query: 104 TKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI 147
L Y V + + T ++AP D EA +
Sbjct: 57 HDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEV 100
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 48.5 bits (114), Expect = 8e-08
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
+ P+ ++ E +E L ++ + ++ + + + + L
Sbjct: 1 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60
Query: 731 ELKEADSETDAGDYKVVATNELGSAT 756
+ D G Y+ A G A+
Sbjct: 61 VFLRPQAS-DEGHYQCFAETPAGVAS 85
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 45.8 bits (107), Expect = 7e-07
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS---LIKGRNITYENNVARF 199
+ PV+++ + + + LEC++ G +K D + N +
Sbjct: 1 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+ S EG Y C A AG A +
Sbjct: 61 VFLRPQASDEGHYQCFAETPAGVASSRVISF 91
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.2 bits (82), Expect = 0.002
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+ +E G + K + + + + ++ ++ +
Sbjct: 9 PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS 68
Query: 575 DTSTYTVTATNAAGS-TSLDLSLQV 598
D Y A AG +S +S +
Sbjct: 69 DEGHYQCFAETPAGVASSRVISFRK 93
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 8e-08
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%)
Query: 44 PGAP------DTPEIVGRSDSSVTLHWRPPQD---DGHSPVTGYVLESHDKDEFMVWNKI 94
P P + + + + W P++ V Y L+ + +E
Sbjct: 1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAP 139
+T+ V L EY RV + +G + + V P
Sbjct: 61 PILTTSVPVYSLKVDKEYEVRVRSKQR-NSGNYGEFSEVLYVTLP 104
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 9e-08
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV-- 202
P ++ + ++ V L C V G W + + + +
Sbjct: 3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLV 231
S+ + TC A N+ G AE S + V
Sbjct: 63 VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 9e-07
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P + +V + L +V+ W S + ++ L L
Sbjct: 3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ--SATVMKSGGLPSLGLTL 60
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
S+ + + A N++G A +V V
Sbjct: 61 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 3e-05
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574
+ + + V + + G + W+ E + + + T+
Sbjct: 9 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDL 67
Query: 575 DTSTYTVTATNAAGSTSLDLSLQV 598
+ T A N G + + + V
Sbjct: 68 NRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 48.3 bits (114), Expect = 1e-07
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWY---KDDSLIKGRNITYENNVARFTVVN 203
+++PL + E +S P +W + + I + + N
Sbjct: 4 VEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLLVQ 232
C G + +A N A+++ L V+
Sbjct: 63 CQLGMTGEVSFQAAN----AKSAANLKVK 87
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 38.6 bits (89), Expect = 2e-04
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
+E L V + A F++ELS PD+ +W KG+ + S I G + L++
Sbjct: 2 IEVEKPLYGVEVFVG-ETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60
Query: 366 KRVTQDDETDIGVLALNVKSVSKLK 390
++ A N KS + LK
Sbjct: 61 HNCQLGMTGEVSFQAANAKSAANLK 85
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.004
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 734
+ V T ++ + P W +PL +SP I DG+ IL L
Sbjct: 4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62
Query: 735 ADSETDAGDYKVVATNELGSAT 756
G+ A N +A
Sbjct: 63 CQLG-MTGEVSFQAANAKSAAN 83
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW--NKIETTS 98
++ AP + ++ + S +L W + + ++ + +
Sbjct: 2 VNIQMAPPSLQVT-KDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNA 60
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGP 126
+ + L Y RV +
Sbjct: 61 HSMALPALEPSTRYWARVRVRTSRTGYN 88
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-07
Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 7/87 (8%)
Query: 44 PGAPD----TPEIVGRSDSSVTLHWRPPQ---DDGHSPVTGYVLESHDKDEFMVWNKIET 96
P P + + + W PP Y + +
Sbjct: 3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAG 62
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIG 123
T +++ L +Y+ +V G
Sbjct: 63 QQTEFKILSLHPGQKYLVQVRCKPDHG 89
|
| >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-10 receptor 1, IL-10R1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 2e-07
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTT-----YEVTKLTTKH 110
LHW P S T Y + + + + T L +
Sbjct: 15 EFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSN 72
Query: 111 EYMFRVAAVNAIGTGPASH-NTRYVV 135
Y RV AV+ + NTR+ V
Sbjct: 73 GYRARVRAVDGSRHSQWTVTNTRFSV 98
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 44 PGAPDTPEIVGRSDSS-VTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102
P + D+ +T+ W + ++ + + + ++
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCT 61
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
L+ EY V V +T
Sbjct: 62 FDNLSPGLEYNVSVYTVKDDKESVPISDT 90
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 1e-05
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDK 634
DT TV+ + D++ + ++ + + T +NL
Sbjct: 15 DTGVLTVSWERSTTP---DITGYRITTTPTNGQQG---NSLEEVVHADQSSCTFDNLSPG 68
Query: 635 SEYYFQVFAENSVGLGPEATTELV 658
EY V+ + ++
Sbjct: 69 LEYNVSVYTVKDDKESVPISDTII 92
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW----NKIETTST 99
AP + ++V + W Q + ++
Sbjct: 3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 62
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTG 125
+ LT +Y F+V G
Sbjct: 63 WICLETLTPDTQYEFQVRVKPLQGEF 88
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 2e-07
Identities = 12/117 (10%), Positives = 28/117 (23%), Gaps = 25/117 (21%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV-------------------- 90
+ S + L W P + G++L + V
Sbjct: 9 SYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDID 68
Query: 91 -----WNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDA 142
+ + + L +Y V + ++ + ++ DA
Sbjct: 69 PPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDA 125
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 3e-07
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 17/105 (16%)
Query: 145 PVIQEPLKDSVAGFQ-SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203
PVI P +++ S + L C V+G + W + S+I + +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61
Query: 204 C----------------SESSEGRYTCKATNEAGTAETSCTLLVQ 232
S + +TC A N G L+
Sbjct: 62 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 106
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.001
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 13/85 (15%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSK------------ACRIFIDEETSTIAIYSVVRA 574
++ G W NG+ I + + + I +
Sbjct: 21 QLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR 80
Query: 575 DTST-YTVTATNAAGSTSLDLSLQV 598
+T A N G + + L
Sbjct: 81 FYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (109), Expect = 3e-07
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S T C G P P++K KD + V + EG Y C+A +
Sbjct: 20 SQQTPMCQAWGNPLPELKCLKD----------GTFPLPIGESVTVTRDLEGTYLCRARST 69
Query: 220 AGTAETSCTLLVQ 232
G T+ V
Sbjct: 70 QGEVTREVTVNVL 82
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 4e-06
Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 16/94 (17%)
Query: 672 APLFIERF--EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
P ER T E M + +P P + ++ L + +
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTR----- 56
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
G Y A + G T V V
Sbjct: 57 ---------DLEGTYLCRARSTQGEVTREVTVNV 81
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 5e-04
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575
+ SQ + +G P PE+ +K +V R
Sbjct: 12 GNWTWPENSQQTPMCQAWGNPLPELKCLK-------------DGTFPLPIGESVTVTRDL 58
Query: 576 TSTYTVTATNAAGSTSLDLSLQVL 599
TY A + G + ++++ VL
Sbjct: 59 EGTYLCRARSTQGEVTREVTVNVL 82
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 6e-07
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 160 SSVTLEC------VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYT 213
L C P ++WYKD + NI + R V+N +E G YT
Sbjct: 15 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYT 74
Query: 214 CKATNEAGTAETSCTLLVQ 232
C A+ + T +++
Sbjct: 75 CHASYTYLGKQYPITRVIE 93
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 7e-07
Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 8/96 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNITYENNVARFT- 200
+ L+ ++ S T+EC V V + + ++ + + +
Sbjct: 3 RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62
Query: 201 ----VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
E ++C A + + +
Sbjct: 63 ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 98
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 9/102 (8%), Positives = 29/102 (28%), Gaps = 10/102 (9%)
Query: 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG---FPRPEISWMKNGAEITDSKACRIF 558
PP+Q + L + ++V + +E + + + + +
Sbjct: 1 PPRQVILTL-----QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA 55
Query: 559 IDEETS--TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+ + T + ++ A S ++ +
Sbjct: 56 PAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 9e-07
Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 3/91 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIKGRNITYENNVARFTV 201
++ S +TL C V G + + + +K E TV
Sbjct: 5 ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + +++C+ +
Sbjct: 65 LVRRDHHGAQFSCRTELDLRPQGLELFENTS 95
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 1e-06
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 674 LFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSS---------PKKRE 721
LFIE+ + TVK I +AKVKA P+I WF+ L+S
Sbjct: 2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774
+++ +A AG+Y+ T + + + V P+I+
Sbjct: 62 HSRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 113
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 9e-06
Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 149 EPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYKDDSLIKG------------RNITYE 193
E + +T V P IKW+K +
Sbjct: 5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSR 64
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
++ ++ G Y C+ T + S L V
Sbjct: 65 VYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 105
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFP---RPEISWMKNGAEITDSKACR---------IFIDEE 562
+ + V K +P I W K SKA +
Sbjct: 7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 66
Query: 563 TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
T + I Y T S L+V
Sbjct: 67 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-06
Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 4/80 (5%)
Query: 160 SSVTLEC-VVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESSEGRYTCK 215
C + I WYKDDS + + + V G Y C
Sbjct: 18 EIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCV 77
Query: 216 ATNEAGTAETSCTLLVQGKE 235
N + + E
Sbjct: 78 VRNSSYCLRIKISAKFVENE 97
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 9/66 (13%), Positives = 23/66 (34%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
+ I+W K+ ++ S I + + D+ Y N++ +
Sbjct: 29 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 88
Query: 594 LSLQVL 599
+S + +
Sbjct: 89 ISAKFV 94
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 4e-06
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TST 99
S P E +S + W PQ S ++ Y+L K+ W +
Sbjct: 1 SGPVEVFITE-TPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLN 56
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
+Y + L Y ++ ++ G +
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEVTR 86
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.002
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656
+ YI++ + KNS+ K AT+ YT++ L+ Y Q+ + G +
Sbjct: 29 HISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFD 88
Query: 657 LVALA 661
+
Sbjct: 89 FTTTS 93
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 6e-06
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLI-------------KGRNITYENNVARFTVVNCSE 206
+VT + VP ++ W K + + + T+ N +
Sbjct: 11 GNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69
Query: 207 SSEGRYTCKATNEAGTAETSCTLL 230
S E Y ++ N T + +L
Sbjct: 70 SDEDEYEMESPNITDTMKFFLYVL 93
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 1e-04
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583
+ EV + + S R+++D + ++ IY++ +D Y + +
Sbjct: 20 NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79
Query: 584 TNAAGSTSLDLSLQVL 599
N + L VL
Sbjct: 80 PNITDTMK--FFLYVL 93
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 6e-06
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTY 101
S V +DSS+ L W P V+ + + + ++++ Y
Sbjct: 4 SEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVA-AGEGIPIFEDFVDSSVGYY 62
Query: 102 EVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131
VT L +Y V + G + T
Sbjct: 63 TVTGLEPGIDYDISVITLINGGESAPTTLT 92
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 5e-04
Identities = 15/76 (19%), Positives = 24/76 (31%)
Query: 581 VTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640
+T ++ + S ++GY I +D S YTV L +Y
Sbjct: 17 ITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDIS 76
Query: 641 VFAENSVGLGPEATTE 656
V + G T
Sbjct: 77 VITLINGGESAPTTLT 92
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 7e-06
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 4/91 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTV 201
P + + SVTL C + W + R +
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64
Query: 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ G Y+C + LLV
Sbjct: 65 RSVQLHDSGNYSCYRAGRPA---GTVHLLVD 92
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 5e-05
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727
+P + P T ++ L + V + KP S R G
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR 61
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
L L+ D+G+Y + VDV
Sbjct: 62 --LLLRSVQLH-DSGNYSCYRAGRPAGT---VHLLVDV 93
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 11/78 (14%), Positives = 20/78 (25%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
+ L+C +++ L + N SE G Y C +
Sbjct: 13 GTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEER 72
Query: 220 AGTAETSCTLLVQGKEIK 237
+ E+K
Sbjct: 73 VKNKTVFQVVAKHVLEVK 90
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 1e-05
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 12/93 (12%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
P F ++ V +L + +IVW+R + + + +
Sbjct: 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVT-- 59
Query: 732 LKEADSETDAGDYKVVATNELGSAT-HGARVTV 763
+ + A N G A+ A V +
Sbjct: 60 --------QSTMFSCEAHNLKGLASSRTATVHL 84
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 7e-05
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203
P KD + L C I W++ + I + +
Sbjct: 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIG------GPAPSPSVLNV 55
Query: 204 CSESSEGRYTCKATNEAGTAET-SCTLLVQ 232
+ ++C+A N G A + + T+ +Q
Sbjct: 56 TGVTQSTMFSCEAHNLKGLASSRTATVHLQ 85
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 1e-05
Identities = 20/83 (24%), Positives = 31/83 (37%)
Query: 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESS 208
P +A SV+L C +G +P W +T E + T+ S +
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGN 65
Query: 209 EGRYTCKATNEAGTAETSCTLLV 231
E Y C AT E+ E + +
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEI 88
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-05
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203
++ P +S L C + ++W D+ + +V +
Sbjct: 4 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNAS 63
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLLV 231
S + C + T + + LLV
Sbjct: 64 LSAAGT--RVCVGSCGGRTFQHTVQLLV 89
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 9e-04
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 673 PLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
PL +E E V + +L ++ + + V +R D +L
Sbjct: 3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDT----SLGAVQSDTGRSVLT 58
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
++ A AG V + + H ++ V
Sbjct: 59 VRNASLS-AAGTRVCVGSCGGRTFQHTVQLLV 89
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Score = 40.0 bits (93), Expect = 7e-05
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIK--WYKDDSLIKGRNITYENNVARFTVVNCS 205
Q K SV ++ + C+V DI+ + + + ++ V
Sbjct: 2 QPHTKPSVFVMKNGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLG 61
Query: 206 E-SSEGRYTCKATNEAGTAETS 226
+ TC ++ T ++
Sbjct: 62 KYEDSNSVTCSVQHDNKTVHST 83
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 7e-05
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIETTST 99
S+ +P + R+ V LHW PP+ + GYVLE + ++ + T T
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPPELVP-KRLDGYVLEGRQGSQGWEVLDPAVAGTET 63
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
V L Y FR+ A S
Sbjct: 64 ELLVPGLIKDVLYEFRLVAFAGSFVSDPS 92
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 8e-05
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 11/100 (11%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW-----------YKDDSLIKGRNITY 192
+ + + + V L C SG +P ++W ++ +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
T + + G YTC + E G + + +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.6 bits (91), Expect = 1e-04
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNC 204
P +Q + ++ SVTL C+ + + + SL +T N + +
Sbjct: 6 PFLQ--VTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPI 63
Query: 205 SESSEGRYTCKATNEAGTAET-SCTLLVQ 232
G Y C+ +N + S L +
Sbjct: 64 KREDAGEYQCEISNPVSVRRSNSIKLDII 92
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (91), Expect = 1e-04
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-----------DDSLIKGRNITYE 193
+ D S+ L C SG +P ++W + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 194 NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + T + + G YTC + E G ++ +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 16/112 (14%), Positives = 24/112 (21%), Gaps = 26/112 (23%)
Query: 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-------------- 192
+ P A L C +S R +
Sbjct: 5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64
Query: 193 ------------ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ N S EG YTC + + E + L V+
Sbjct: 65 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 3e-04
Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 7/74 (9%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S+TL +P ++ +V G +TC
Sbjct: 15 QSLTLTLESPPGSSPSVQCRS-------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQN 67
Query: 220 AGTAETSCTLLVQG 233
E ++V
Sbjct: 68 QKKVEFKIDIVVLA 81
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 37.7 bits (86), Expect = 7e-04
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 12/103 (11%)
Query: 675 FIERFEEK-----TVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENI 728
F++ F + + E + S W N P R
Sbjct: 2 FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 61
Query: 729 ILELKEADSETDAGDYKVVATNELGSATH-----GARVTVDVE 766
L + + +D G+Y AT+ + T +++++ E
Sbjct: 62 NLYIAKT-EASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 103
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.6 bits (83), Expect = 0.002
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 13/110 (11%)
Query: 146 VIQEPLK--DSVAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIKGRNITYENNVARF--- 199
+I P K + L+CV+ P I W K S + +
Sbjct: 2 LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP 61
Query: 200 -------TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARH 242
V S +Y C A N A E K+++ +
Sbjct: 62 DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGY 111
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 160 SSVTLECVV-SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
++ L C P + ++++ ++ + + F++ + S G Y C
Sbjct: 16 ETIVLRCHSWKDKPLVKVTFFQNG-----KSKKFSRSDPNFSIPQANHSHSGDYHCTGNI 70
Query: 219 EAGTAET-SCTLLVQG 233
+ T+ VQ
Sbjct: 71 GYTLYSSKPVTITVQA 86
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 150 PLKDSVAGFQSSVTLECVVSGVPTPDI--KWYKDDSLIKGRNITYE--------NNVARF 199
D F ++ L C+VSG I W +D ++ T + +
Sbjct: 12 SSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSEL 71
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETS 226
T+ S+ YTC+ T + T E S
Sbjct: 72 TLSQKHWLSDRTYTCQVTYQGHTFEDS 98
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.004
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 10/112 (8%)
Query: 44 PGAPDTPEI-VGRSDSSVTLHWRPPQDDGHSPVTG----YVLESHDKDEFMVWNKIETTS 98
P P + G + +++ + WRPP G S
Sbjct: 11 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTADS 70
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEP 150
T E+ +L + V ++A G S V P + P P
Sbjct: 71 TAVELVRLRSLEAKGVTVRTLSAQGESVDS-----AVAAVPPELLVPPTPHP 117
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 803 | |||
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.69 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.68 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.68 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.68 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.65 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.63 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.58 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.54 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.53 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.53 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.53 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.53 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.52 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.52 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.52 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.52 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.51 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.51 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.5 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.49 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.49 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.47 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.46 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.46 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.46 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.46 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.45 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.45 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.45 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.45 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.44 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.44 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.43 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.43 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.43 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.43 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.42 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.42 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.41 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.41 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.41 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.4 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.4 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.4 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.39 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.39 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.38 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.38 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.38 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.37 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.37 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.37 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.37 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.36 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.36 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.36 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.36 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.36 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.35 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.34 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.34 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.34 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.33 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.32 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.31 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.31 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.31 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.31 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.29 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.28 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.28 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.27 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.27 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.27 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.27 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.27 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.27 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.26 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.26 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.26 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.26 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.25 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.24 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.24 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.24 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.23 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.23 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.21 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.2 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.2 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.18 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.17 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.16 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.16 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.16 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.15 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.15 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.15 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.15 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.13 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.12 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.12 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.1 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.08 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.07 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.06 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.05 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.04 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.03 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.02 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.01 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.99 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.92 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.85 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.77 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.76 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.65 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.62 | |
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 98.6 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.54 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.44 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 98.32 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.32 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 98.31 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 98.31 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.25 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.23 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 98.21 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.18 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 98.18 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.16 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.16 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 98.15 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.14 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.14 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 98.13 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 98.11 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.1 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.1 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.09 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.08 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 98.08 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.08 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.08 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.07 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.06 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.06 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.06 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.04 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.04 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 98.04 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 98.02 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.02 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.02 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.0 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 97.99 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.98 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.97 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 97.97 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.96 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.95 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.94 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.94 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.94 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 97.94 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.93 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.93 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 97.93 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.93 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.92 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.92 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.92 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.92 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.9 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 97.9 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 97.9 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.9 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.9 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 97.89 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 97.89 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.89 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.88 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.87 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.86 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 97.85 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.85 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.84 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.84 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.83 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.82 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.82 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 97.82 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.8 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.8 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.8 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.8 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 97.8 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.79 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.79 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.78 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.78 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.77 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.77 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.77 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.76 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 97.76 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.75 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.75 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.74 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.74 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.74 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.73 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.72 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.72 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.72 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.72 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.71 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.71 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.71 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.7 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.7 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.7 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.68 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.66 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.65 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.65 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.64 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.64 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 97.63 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.62 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.62 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.62 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.62 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.61 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.61 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.61 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.61 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.6 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.6 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.6 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.6 | |
| d2d9qb2 | 105 | Granulocyte colony-stimulating factor (GC-SF) rece | 97.59 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 97.59 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.59 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.58 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.58 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.57 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.56 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 97.56 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.55 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.55 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.54 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 97.54 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.53 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.53 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 97.53 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.53 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.52 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.52 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.51 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.51 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 97.5 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.49 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.48 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.47 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.47 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.47 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.46 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.46 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.46 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.46 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.45 | |
| d1cd9b2 | 106 | Granulocyte colony-stimulating factor (GC-SF) rece | 97.44 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.43 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.43 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 97.42 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.41 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.41 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.41 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.41 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.4 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.39 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 97.38 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.38 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.38 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.38 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 97.37 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.36 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.36 | |
| d1k85a_ | 88 | Fibronectin type III domain from chitinase A1. {Ba | 97.35 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.35 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.35 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.34 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.34 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.34 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.33 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.33 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.33 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.33 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.32 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.32 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 97.32 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.32 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.32 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.31 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.31 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.3 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.3 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.29 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.27 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.26 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.25 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.25 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.25 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.25 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.24 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.24 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.23 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.22 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.22 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.22 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.22 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.22 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.21 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.21 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.21 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.21 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.2 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.2 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.19 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.18 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.17 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.17 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.16 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.16 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.16 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.15 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.15 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.14 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.14 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.13 | |
| d1n26a3 | 104 | Interleukin-6 receptor alpha chain, domains 2 and | 97.13 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.12 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 97.12 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.12 | |
| d1f6fb2 | 103 | Prolactin receptor {Rat (Rattus norvegicus) [TaxId | 97.12 | |
| d1x5ja1 | 100 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.12 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.11 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.11 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.11 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.1 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.1 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.1 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.09 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.09 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.09 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.09 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 97.09 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.08 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.07 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.06 | |
| d3d48r2 | 104 | Prolactin receptor {Human (Homo sapiens) [TaxId: 9 | 97.06 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.06 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.05 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.05 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.05 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.04 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.04 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.04 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.04 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.03 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.03 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.03 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.03 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.03 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.02 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.02 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.02 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.01 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.0 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.0 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.99 | |
| d1wk0a_ | 137 | Fibronectin type-III domain containing protein 3a, | 96.98 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 96.98 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 96.97 | |
| d1qr4a1 | 87 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 96.97 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.97 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 96.96 | |
| d1tdqa3 | 86 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.95 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 96.94 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.94 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.92 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.91 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.91 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.9 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.86 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 96.86 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 96.86 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.86 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 96.85 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 96.85 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 96.85 | |
| d2cuma1 | 93 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 96.85 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 96.84 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 96.83 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.82 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 96.82 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 96.81 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 96.81 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 96.81 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 96.81 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 96.8 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 96.8 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.79 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 96.78 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 96.78 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 96.78 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 96.78 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.77 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.77 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 96.76 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.76 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 96.76 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 96.75 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.74 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 96.74 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.74 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 96.74 | |
| d1iarb2 | 101 | Interleukin-4 receptor alpha chain {Human (Homo sa | 96.73 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 96.71 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 96.71 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 96.71 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.7 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 96.7 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.7 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.7 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 96.7 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.69 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 96.69 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 96.69 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 96.69 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 96.68 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 96.68 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.67 | |
| d1axib2 | 106 | Growth hormone receptor {Human (Homo sapiens) [Tax | 96.66 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 96.66 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 96.65 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 96.65 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.65 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 96.64 | |
| d1owwa_ | 93 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.64 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 96.64 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.63 | |
| d1bqua1 | 95 | Cytokine receptor gp130 cytokine-binding domains { | 96.63 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.62 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 96.61 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 96.61 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 96.6 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.59 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 96.59 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.57 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 96.57 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 96.56 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.56 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 96.55 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.55 | |
| d1fnfa3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 96.54 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.54 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 96.54 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.54 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.53 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.53 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 96.52 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 96.52 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 96.51 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 96.51 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.51 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.51 | |
| d2b5ic1 | 95 | Cytokine receptor common gamma chain {Human (Homo | 96.5 |
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.2e-17 Score=136.46 Aligned_cols=97 Identities=22% Similarity=0.338 Sum_probs=88.2
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.|+..+.+..+.+|+++.|.|.+.|.|.+.+.|+|+|..|..+.++.+.......+|.|.++ +.+|+|.|+|.|.|.+
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~ 79 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA-RQEHCGCYTLLVENKL 79 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTC-CTTTCEEEEEEEECSS
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeC-CcccCEEEEEEEEECC
Confidence 567778888999999999999999999999999999999999999999888888889999999 7999999999999999
Q ss_pred cceeeeEEEEEEeeccCCC
Q psy2776 753 GSATHGARVTVDVEKVGRP 771 (803)
Q Consensus 753 G~~~~~~~l~V~~~~~~pp 771 (803)
|.++.++.|.|...+ .||
T Consensus 80 G~~~~~~~l~V~~~P-~pP 97 (101)
T d2cqva1 80 GSRQAQVNLTVVDKP-DPP 97 (101)
T ss_dssp CEEECCEEEEEECSC-SCC
T ss_pred CEEEEEEEEEEEecC-CCc
Confidence 999999999996433 344
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.69 E-value=2.7e-17 Score=137.62 Aligned_cols=92 Identities=25% Similarity=0.416 Sum_probs=86.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.|+|+..+.+..+.+|+++.|.|.+.|.|.|.+.|++||.+|..+.++.+..++....|.|.++ ..+|+|.|+|.|.|.
T Consensus 1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~ 79 (97)
T d1koaa1 1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV-KGDDKGEYTVRAKNS 79 (97)
T ss_dssp SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCC-CSGGGSCEEEEEEET
T ss_pred CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCC-ceecCEEEEEEEEEC
Confidence 3789999999999999999999999999999999999999999998888888888899999999 799999999999999
Q ss_pred CcceeeeEEEEEE
Q psy2776 752 LGSATHGARVTVD 764 (803)
Q Consensus 752 ~G~~~~~~~l~V~ 764 (803)
+|.++.++.|.|.
T Consensus 80 ~G~~~~~~~l~V~ 92 (97)
T d1koaa1 80 YGTKEEIVFLNVT 92 (97)
T ss_dssp TEEEEEEECCEEE
T ss_pred CCEEEEEEEEEEe
Confidence 9999999998885
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.68 E-value=1.3e-16 Score=133.65 Aligned_cols=93 Identities=22% Similarity=0.353 Sum_probs=85.3
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|+|+..+.+..+.+|+++.|.|.+.|.|.|.+.|+|||.+|..+.++.+.. +++...|.|.++ ..+|+|.|+|.|+
T Consensus 3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a~ 81 (98)
T d1g1ca_ 3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV-TGEDSASIMVKAI 81 (98)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSC-CGGGCEEEEEEEE
T ss_pred cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccC-ccccCEEEEEEEE
Confidence 37899999999999999999999999999999999999999999888866544 466789999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|.+|.++.++.|.|+
T Consensus 82 N~~G~~~~~~~L~V~ 96 (98)
T d1g1ca_ 82 NIAGETSSHAFLLVQ 96 (98)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCcEEEEEEEEEEE
Confidence 999999999999986
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.68 E-value=5.2e-17 Score=134.66 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=87.1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.|+..+.+..+.+|+++.|.|.+.|.|.|.+.|++|+..+..+.++.+...+....|.|.++ +.+|+|.|+|.|.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a~N~ 80 (93)
T d1wiua_ 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSA-KRADSGNYKLKVKNE 80 (93)
T ss_dssp CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTB-CGGGCEEEEEEEEET
T ss_pred CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccc-cccccEEEEEEEEEC
Confidence 6889999999999999999999999999999999999999999999999888888999999999 799999999999999
Q ss_pred CcceeeeEEEEEE
Q psy2776 752 LGSATHGARVTVD 764 (803)
Q Consensus 752 ~G~~~~~~~l~V~ 764 (803)
+|.+++++.|.|+
T Consensus 81 ~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 81 LGEDEAIFEVIVQ 93 (93)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
Confidence 9999999998874
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.68 E-value=1.3e-16 Score=134.83 Aligned_cols=93 Identities=29% Similarity=0.492 Sum_probs=86.0
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+|||.+|..+.++.+..+ ....+|.|.++ +.+|+|.|+|+|+
T Consensus 7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~ 85 (102)
T d1fhga_ 7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV-CGDDDAKYTCKAV 85 (102)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSC-CGGGCEEEEEEEE
T ss_pred CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCC-CHHhCEEEEEEEE
Confidence 478999999999999999999999999999999999999999999998888765 44788999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|.+|.++.++.|.|+
T Consensus 86 N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 86 NSLGEATCTAELLVE 100 (102)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCcEEEEEEEEEEE
Confidence 999999999999885
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.65 E-value=2.9e-16 Score=128.45 Aligned_cols=87 Identities=24% Similarity=0.453 Sum_probs=79.4
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.|+..+.+..+..|+++.|.|.+.|.|.|.+.|+|||.+|..+.++.+. +. .|.|.++ ..+|+|.|+|.|.|.+
T Consensus 2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~--~~--~L~i~~v-~~~D~G~Y~C~a~N~~ 76 (89)
T d1cs6a4 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKL-VLEDSGMYQCVAENKH 76 (89)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSC-CGGGCEEEEEEEEETT
T ss_pred CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee--ee--eEEEEee-cccCCEEEEEEEEeCC
Confidence 78999999999999999999999999999999999999999988876653 33 6999999 7899999999999999
Q ss_pred cceeeeEEEEEE
Q psy2776 753 GSATHGARVTVD 764 (803)
Q Consensus 753 G~~~~~~~l~V~ 764 (803)
|..+.++.|.|+
T Consensus 77 G~~~~~~~l~V~ 88 (89)
T d1cs6a4 77 GTVYASAELTVQ 88 (89)
T ss_dssp EEEEEEEEEEEE
T ss_pred CEEEEEEEEEEE
Confidence 999999999885
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.63 E-value=1.2e-16 Score=131.86 Aligned_cols=89 Identities=21% Similarity=0.407 Sum_probs=82.2
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|+..|.++.+.+|+++.|.|.+.|.|.|.+.|+++|.+|..+.++.+........|.|.++ +.+|+|.|+|.|.|.+|.
T Consensus 2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~ 80 (91)
T d1tnna_ 2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV-QASDEGNYSVVVENSEGK 80 (91)
T ss_dssp CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSC-CSCCCEEEEEECBCSSCB
T ss_pred EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCC-CHHHCEEEEEEEEECCCE
Confidence 5556678899999999999999999999999999999999999988888888899999999 799999999999999999
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
++.++.|.|+
T Consensus 81 ~~~~~~l~V~ 90 (91)
T d1tnna_ 81 QEAEFTLTIQ 90 (91)
T ss_dssp CCEEEEEECC
T ss_pred EEEEEEEEEE
Confidence 9999988874
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.58 E-value=2.7e-15 Score=122.63 Aligned_cols=86 Identities=33% Similarity=0.457 Sum_probs=73.3
Q ss_pred CCeeEeccce-eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.|...+.. ..+.+|+++.|.|.+.|.|.|.+.|+++|.+|..+ ++.+. .. .|.|.++ +.+|+|.|+|.|+|
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~--~~--~L~i~~v-~~~d~G~Y~C~a~N 75 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGV-KNGDKGYYGCRATN 75 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSC-CSTTCEEEEEEEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe--ee--eEEECCC-ChhhCEEEEEEEEE
Confidence 5778777654 57899999999999999999999999999998543 54432 23 4999999 79999999999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
.+|.++..+.|.|
T Consensus 76 ~~G~~~~~~~l~V 88 (89)
T d1biha4 76 EHGDKYFETLVQV 88 (89)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE
Confidence 9999999888887
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.9e-15 Score=123.64 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=81.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..|..+.++++...++.++|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 87 (101)
T d2cqva1 8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 87 (101)
T ss_dssp CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEE
Confidence 36788999999999999999999999999999999989999888888899999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|...|
T Consensus 88 l~V~~~P 94 (101)
T d2cqva1 88 LTVVDKP 94 (101)
T ss_dssp EEEECSC
T ss_pred EEEEecC
Confidence 9998865
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=7.1e-15 Score=123.40 Aligned_cols=92 Identities=18% Similarity=0.420 Sum_probs=75.1
Q ss_pred CCeeEeccce--eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC--eEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 672 APLFIERFEE--KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 672 ~p~~~~~~~~--~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~--~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
||.|...+.. .++..|+++.|.|.+.|.|.|.+.|+++|.++..... ..........+|.|.++ +.+|+|.|+|.
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~ 81 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNV-DKNDEAEYVCI 81 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSC-CGGGCEEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCC-CcccCEEEEEE
Confidence 6777765544 4567899999999999999999999999999875533 22233445568999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|+|.+|.++..+.|.|.
T Consensus 82 a~N~~G~~~~~~~l~V~ 98 (100)
T d1qz1a3 82 AENKAGEQDASIHLKVF 98 (100)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEEEE
Confidence 99999999999999884
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.8e-14 Score=121.22 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=78.6
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeecc------CCCCeEEEeeCceEEEEEecCCC-CCCcee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLL------SSPKKREIFDGENIILELKEADS-ETDAGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~------~~~~~~~~~~~~~~~L~i~~v~~-~~D~G~ 743 (803)
||.|...+....+.+|+.+.|.|.+.|.|+| .+.|++++.... ...++.+...+...+|.|.++ . .+|+|.
T Consensus 2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~~D~G~ 80 (101)
T d3b5ha1 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL-NMEADPGQ 80 (101)
T ss_dssp SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSC-CTTTSSEE
T ss_pred CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEecc-ccccCCEE
Confidence 7888888888999999999999999999988 699999753321 234577777788899999999 5 579999
Q ss_pred EEEEEEccCcceeeeEEEEEE
Q psy2776 744 YKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|+|.|.|.+|.++..+.|.|+
T Consensus 81 Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 81 YRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEECCCEEEEEEEEEEC
Confidence 999999999999999999884
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.53 E-value=1.1e-14 Score=120.29 Aligned_cols=84 Identities=19% Similarity=0.320 Sum_probs=78.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+....+.+.|.|.++..+|+|.|+|.|+|..|..+.++.
T Consensus 10 ~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 89 (93)
T d1wiua_ 10 RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFE 89 (93)
T ss_dssp CEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEE
Confidence 46889999999999999999999999999999999988888888888899999999999999999999999999999999
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 90 l~V~ 93 (93)
T d1wiua_ 90 VIVQ 93 (93)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9873
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.53 E-value=7e-15 Score=122.60 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=78.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
..+.+.+|+.+.|.|.+.|.|.|.++|+++|..|..+.++.+....+...|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 9 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 88 (97)
T d1koaa1 9 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF 88 (97)
T ss_dssp CCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEEC
T ss_pred CCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEE
Confidence 35778999999999999999999999999999999888887777777889999999999999999999999999999999
Q ss_pred EEEeee
Q psy2776 596 LQVLGY 601 (803)
Q Consensus 596 l~V~~~ 601 (803)
|.|...
T Consensus 89 l~V~~~ 94 (97)
T d1koaa1 89 LNVTRH 94 (97)
T ss_dssp CEEECS
T ss_pred EEEeec
Confidence 998653
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.53 E-value=4.8e-15 Score=121.95 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=78.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.+.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 8 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 87 (91)
T d1tnna_ 8 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 87 (91)
T ss_dssp CEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEE
T ss_pred CEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEE
Confidence 57789999999999999999999999999999998888888888889999999999999999999999999999999999
Q ss_pred EEe
Q psy2776 597 QVL 599 (803)
Q Consensus 597 ~V~ 599 (803)
.|.
T Consensus 88 ~V~ 90 (91)
T d1tnna_ 88 TIQ 90 (91)
T ss_dssp ECC
T ss_pred EEE
Confidence 874
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.52 E-value=3.4e-14 Score=119.56 Aligned_cols=87 Identities=25% Similarity=0.426 Sum_probs=78.2
Q ss_pred cccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC-CeEEEEEeeeccCcCeEEEEEEEcCCCCeEE
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
.+..+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..|..+.++.+.... +.++|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 14 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 93 (102)
T d1fhga_ 14 TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 93 (102)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred CCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEE
Confidence 345688899999999999999999999999999999998888876544 4679999999999999999999999999999
Q ss_pred EEEEEEee
Q psy2776 593 DLSLQVLG 600 (803)
Q Consensus 593 s~~l~V~~ 600 (803)
++.|.|..
T Consensus 94 ~~~L~V~s 101 (102)
T d1fhga_ 94 TAELLVET 101 (102)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 99998853
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.52 E-value=3.9e-14 Score=118.21 Aligned_cols=85 Identities=31% Similarity=0.427 Sum_probs=76.5
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|.|.|.++|+|+|.+|..+.+..+.. .++..+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 12 ~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 91 (98)
T d1g1ca_ 12 QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHA 91 (98)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEE
Confidence 46789999999999999999999999999999999887765544 45567999999999999999999999999999999
Q ss_pred EEEEee
Q psy2776 595 SLQVLG 600 (803)
Q Consensus 595 ~l~V~~ 600 (803)
.|.|..
T Consensus 92 ~L~V~~ 97 (98)
T d1g1ca_ 92 FLLVQA 97 (98)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999865
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.52 E-value=4.4e-15 Score=123.76 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=69.6
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeE-EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
..+..|+++.|.|.+.|.|.|.+.|++||.+|..+.++. ........+|.|.++ +.+|+|.|+|.|+|.+|.++.++.
T Consensus 15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSC-CGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCC-CcccCEEEEEEEEECCCEEEEEEE
Confidence 568899999999999999999999999999997665432 222344458999999 799999999999999999999998
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|.|
T Consensus 94 l~V 96 (97)
T d3dara1 94 LDV 96 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.52 E-value=1.5e-14 Score=118.86 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=70.8
Q ss_pred CCeeEec-cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIER-FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.|... +....+.+|+++.|.|.+.|.|.|.+.|+|++..+.... ......|.|.++ +.+|+|.|+|+|.|
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~------~~~~~~L~I~~v-~~~D~G~Y~C~a~N 76 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNV-DFEDEGTYECEAEN 76 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe------eeeeeEEEeCCC-CccCCEEEEEEEEE
Confidence 5666654 577899999999999999999999999999776543221 122337999999 79999999999999
Q ss_pred cCcceeeeEEEEEE
Q psy2776 751 ELGSATHGARVTVD 764 (803)
Q Consensus 751 ~~G~~~~~~~l~V~ 764 (803)
.+|.++..+.|.|.
T Consensus 77 ~~G~~~~~~~l~V~ 90 (91)
T d1cs6a3 77 IKGRDTYQGRIIIH 90 (91)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 99999999988874
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.2e-14 Score=119.63 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=77.1
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
+.|...|...++.+|+.+.|.|.+.|.|.|.+.|++++..+....+..+...+. ..|.|.++ +.+|+|.|+|.|.|..
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~-~~~D~G~Y~C~a~n~~ 79 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGI-KKTDEGTYRCEGRILA 79 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTC-CGGGCEEEEEEEEEGG
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCC-CHHhCEEEEEEEEECc
Confidence 567788889999999999999999999999999999999998766544443322 25999999 7999999999999999
Q ss_pred cceeeeEEEEEEe
Q psy2776 753 GSATHGARVTVDV 765 (803)
Q Consensus 753 G~~~~~~~l~V~~ 765 (803)
|.......|+|.|
T Consensus 80 ~~~~~~~~i~ViV 92 (92)
T d1epfa2 80 RGEINFKDIQVIV 92 (92)
T ss_dssp GTEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
Confidence 9988888887753
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.9e-14 Score=117.27 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=74.0
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC--ceEEEEEecCCCCCCceeEEEEEEccCcce-
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG--ENIILELKEADSETDAGDYKVVATNELGSA- 755 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~--~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~- 755 (803)
|.++.+.+|+++.|.|.+.|.|.|.+.|+|+|.++..+.+..+.... ....|.|.++ +.+|+|.|+|.|+|..|..
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~ 81 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV-ERSDAGRYWCQVEDGGETEI 81 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSC-CGGGCEEEEEEESSCTTCEE
T ss_pred CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCC-CcccCEEEEEEEEECCCCEE
Confidence 45678999999999999999999999999999999887776655543 3567999999 7899999999999999986
Q ss_pred eeeEEEEEEe
Q psy2776 756 THGARVTVDV 765 (803)
Q Consensus 756 ~~~~~l~V~~ 765 (803)
+..+.|.|++
T Consensus 82 S~~~~l~V~G 91 (91)
T d1rhfa1 82 SQPVWLTVEG 91 (91)
T ss_dssp CCCEEEEEEC
T ss_pred EEEEEEEEEC
Confidence 6788888853
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.50 E-value=4e-14 Score=115.55 Aligned_cols=87 Identities=25% Similarity=0.500 Sum_probs=74.5
Q ss_pred CCeeeccCcC-eeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 144 APVIQEPLKD-SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 144 ~p~i~~~~~~-~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
+|.|...+.+ ..+.+|+.+.|.|.+.|.|.|.+.|++++..+...+....++ .|.|.++..+|+|.|+|.|.|..|.
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~ 79 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS--GLVIKGVKNGDKGYYGCRATNEHGD 79 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETT--EEEESSCCSTTCEEEEEEEEETTEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeee--eEEECCCChhhCEEEEEEEEECCCE
Confidence 4566665544 578899999999999999999999999999998776665544 5999999999999999999999999
Q ss_pred eeeEEEEEEe
Q psy2776 223 AETSCTLLVQ 232 (803)
Q Consensus 223 ~~~s~~l~V~ 232 (803)
...++.|.|.
T Consensus 80 ~~~~~~l~V~ 89 (89)
T d1biha4 80 KYFETLVQVN 89 (89)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEEC
Confidence 8888888773
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.49 E-value=4.6e-14 Score=115.09 Aligned_cols=86 Identities=28% Similarity=0.511 Sum_probs=75.7
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-eEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ++...+ ..|.|.++..+|+|.|+|.|.|..|..
T Consensus 2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (89)
T d1cs6a4 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG--GELRFSKLVLEDSGMYQCVAENKHGTV 79 (89)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET--TEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeee--eeEEEEeecccCCEEEEEEEEeCCCEE
Confidence 56777888999999999999999999999999999999988754 344433 479999999999999999999999999
Q ss_pred eeEEEEEEe
Q psy2776 224 ETSCTLLVQ 232 (803)
Q Consensus 224 ~~s~~l~V~ 232 (803)
..++.|.|.
T Consensus 80 ~~~~~l~V~ 88 (89)
T d1cs6a4 80 YASAELTVQ 88 (89)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888888885
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.6e-14 Score=124.25 Aligned_cols=98 Identities=26% Similarity=0.299 Sum_probs=78.1
Q ss_pred eEeccceeEEecCCeEEEEEEEeecC---CCceEEeeCCeecc---CCCCeEEEee------CceEEEEEecCCCCCCce
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLL---SSPKKREIFD------GENIILELKEADSETDAG 742 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~~~~l~---~~~~~~~~~~------~~~~~L~i~~v~~~~D~G 742 (803)
|+..|.+..+.+|++++|.|.+.|.| .|.|.|+|++.... ...++.+... ...+.|.|.++ +.+|+|
T Consensus 3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G 81 (113)
T d2dava1 3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKA-KDNFAG 81 (113)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSC-CTTSCE
T ss_pred EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccC-CHHHCe
Confidence 66777889999999999999999998 57999999875422 3333333221 23567999999 799999
Q ss_pred eEEEEEEccCcceeeeEEEEEEeeccCCCCC
Q psy2776 743 DYKVVATNELGSATHGARVTVDVEKVGRPSI 773 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~ 773 (803)
.|+|.|+|.+|..++++.|.|..++..+|.+
T Consensus 82 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~~p~i 112 (113)
T d2dava1 82 NYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112 (113)
T ss_dssp EEEEEEECSSCEEEECCEEEEECCCCSCCCC
T ss_pred EEEEEEEeCCCEEEEEEEEEEEcCCCcCCCC
Confidence 9999999999999999999998666666654
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.1e-14 Score=112.19 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=66.6
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
|.|...+.+..+.+|+++.|.|.+.|.|.| .|.|+|||.++..... ...+|.+ . ..+|+|.|+|.|.|.
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------~~~~l~~--~-~~~d~G~Y~C~A~N~ 71 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNV--T-GVTQSTMFSCEAHNL 71 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEE--C-CCSSCEEEEEEEEET
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------cceEEec--C-CccccEEEEEEEEcC
Confidence 778889999999999999999999999998 8999999999865421 2233444 4 457999999999999
Q ss_pred Ccce-eeeEEEEEE
Q psy2776 752 LGSA-THGARVTVD 764 (803)
Q Consensus 752 ~G~~-~~~~~l~V~ 764 (803)
+|.. ++.+.|.|+
T Consensus 72 ~G~~~S~~~~v~Vk 85 (85)
T d1rhfa2 72 KGLASSRTATVHLQ 85 (85)
T ss_dssp TEEEECCCEEEEEC
T ss_pred CCcEEEEEEEEEEC
Confidence 9965 567777763
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.46 E-value=3.3e-14 Score=118.41 Aligned_cols=89 Identities=25% Similarity=0.385 Sum_probs=73.8
Q ss_pred CCeeEeccceeEEecC---CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+|.|+..+.+..+.+| +++.|.|.+.|.|.|.+.|++||.++..+.+..+...+. ..|.|..+ ..+|+|.|+|+|
T Consensus 4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~-~~~d~G~Y~C~a 81 (97)
T d1cs6a1 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPV-KAKDAGSYQCVA 81 (97)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCC-HHHHCEEEEEEE
T ss_pred CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecc-cccCCEEEEEEE
Confidence 7889999988887766 799999999999999999999999998766554444443 36778877 689999999999
Q ss_pred EccCcce-eeeEEEE
Q psy2776 749 TNELGSA-THGARVT 762 (803)
Q Consensus 749 ~N~~G~~-~~~~~l~ 762 (803)
+|.+|.. ++.+.|+
T Consensus 82 ~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 82 TNARGTVVSREASLR 96 (97)
T ss_dssp EETTEEEECCCEEEE
T ss_pred EECCCEEEEEEEEEe
Confidence 9999986 5677765
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.3e-14 Score=124.13 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=73.2
Q ss_pred ccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-----------------------------CCCeEEEeeCceE
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-----------------------------SPKKREIFDGENI 728 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-----------------------------~~~~~~~~~~~~~ 728 (803)
.+..+.|.+|++++|.|.+.|.|.|.+.|++++..+.. ..++.+......+
T Consensus 15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 94 (130)
T d1gxea_ 15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS 94 (130)
T ss_dssp CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence 45578899999999999999999999999998765432 2345666677788
Q ss_pred EEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 729 ~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+|.|.++ ..+|+|.|+|.|+|.+|.+++.+.|.|
T Consensus 95 ~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 128 (130)
T d1gxea_ 95 IFTVEGA-EKEDEGVYTVTVKNPVGEDQVNLTVKV 128 (130)
T ss_dssp EEECSCC-CTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEECcC-ChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence 9999999 799999999999999999999999887
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.46 E-value=1.1e-13 Score=118.23 Aligned_cols=92 Identities=23% Similarity=0.379 Sum_probs=70.5
Q ss_pred CCCeeEec-cceeEEecCCeEEEEEEEeecCCCceEEeeCCeecc----CCCCe--E-------EEeeCceEEEEEecCC
Q psy2776 671 QAPLFIER-FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL----SSPKK--R-------EIFDGENIILELKEAD 736 (803)
Q Consensus 671 ~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~----~~~~~--~-------~~~~~~~~~L~i~~v~ 736 (803)
.+|.|... |.+.++..|++++|.|.+.|.|.|.|.|+|++.... ..... . ...+.....|.|.++
T Consensus 3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~- 81 (109)
T d2fdbp2 3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV- 81 (109)
T ss_dssp SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC-
T ss_pred CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC-
Confidence 36777765 578999999999999999999999999999764421 11110 0 111233578999999
Q ss_pred CCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 737 SETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.+|+|.|+|.|+|.+|.+.+++.|+|
T Consensus 82 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 82 TFEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 799999999999999999999999987
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.3e-14 Score=119.51 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=75.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCce-eEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG-DYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G-~Y~C~a~N 750 (803)
.|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+..... .........|.|.++ +.+|.| .|+|.|+|
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~-~~~d~G~~Y~C~a~N 78 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANV-TSDLNRKNVTCWAEN 78 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESC-CSTTTTCCEEECCEE
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccc-cccccceEEEEEEEc
Confidence 57888888899999999999999999999999999999987754322 223455678999999 789999 69999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
.+|.++.++.|.|
T Consensus 79 ~~G~~~~s~~l~V 91 (92)
T d2ifga1 79 DVGRAEVSVQVNV 91 (92)
T ss_dssp TTEECCEEECCCC
T ss_pred CCCEEEEEEEEEE
Confidence 9999999888876
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.2e-14 Score=114.93 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=62.7
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
+.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..... +.++ +.+|+|.|.|+|+|.+|+++..
T Consensus 11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~~-------------~~~v-~~~d~G~Y~C~A~N~~G~~~~~ 76 (84)
T d2oz4a3 11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------------SVTV-TRDLEGTYLCRARSTQGEVTRE 76 (84)
T ss_dssp CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-------------CEEC-CGGGCEEEEEEEEETTEEEEEE
T ss_pred CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeeee-------------eecc-ccCCCCEEEEEEEcCCCEEEEE
Confidence 4567899999999999999999999999999987754432 3456 6899999999999999999999
Q ss_pred EEEEEEe
Q psy2776 759 ARVTVDV 765 (803)
Q Consensus 759 ~~l~V~~ 765 (803)
+.|.|..
T Consensus 77 ~~l~V~~ 83 (84)
T d2oz4a3 77 VTVNVLS 83 (84)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9888853
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.4e-13 Score=115.15 Aligned_cols=92 Identities=21% Similarity=0.265 Sum_probs=74.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecC---CCceEEeeCCeeccC---CCCeEEEe------eCceEEEEEecCCCCC
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLS---SPKKREIF------DGENIILELKEADSET 739 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~~~~l~~---~~~~~~~~------~~~~~~L~i~~v~~~~ 739 (803)
.|.|+..|.+..+..|++++|.|.+.|.| .|.|.|++++..... ..++.... ....++|.|.++ +.+
T Consensus 4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~ 82 (110)
T d2avga1 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA-QPA 82 (110)
T ss_dssp TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESC-CTT
T ss_pred CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEecc-CHH
Confidence 45788999999999999999999999999 578999998754322 22222221 123578999999 799
Q ss_pred CceeEEEEEEccCcceeeeEEEEEE
Q psy2776 740 DAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|+|.|+|.|+|..|.+++++.|.|+
T Consensus 83 D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (110)
T d2avga1 83 FTGGYRCEVSTKDKFDCSNFNLTVH 107 (110)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HCcEEEEEEEECCCeEEEEEEEEEE
Confidence 9999999999999999999999996
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.45 E-value=1.3e-13 Score=114.69 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=70.7
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe--eCceEEEEEecCCCCCCceeEEEEEEccCcce-
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVVATNELGSA- 755 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~- 755 (803)
+++..+..|+++.|.|.+.|.|.|.+.|+++|..+..+....+.. ......|.|.++ +.+|+|.|+|.|.|.+|..
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~ 88 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT-LPEDEGVYTCEVDNGVGKPQ 88 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSC-CGGGCEEEEEEECCSSSSCE
T ss_pred CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEec-cccccEEEEEEEEECCCcEE
Confidence 457889999999999999999999999999999997665543332 334568999999 7999999999999999986
Q ss_pred eeeEEEEE
Q psy2776 756 THGARVTV 763 (803)
Q Consensus 756 ~~~~~l~V 763 (803)
+.++.|+|
T Consensus 89 s~s~~L~V 96 (97)
T d1biha3 89 KHSLKLTV 96 (97)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 45788877
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.8e-13 Score=115.05 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=75.1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-----CceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-----GENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
||.|.... ....+....|.|.+.|.|.|.+.|++||.+|..+.+..+... ...+.|.|.++ +.+|+|.|+|
T Consensus 4 pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C 79 (103)
T d1wwbx_ 4 APTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP-THMNNGDYTL 79 (103)
T ss_dssp CCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESC-CGGGCEEEEE
T ss_pred CCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCC-CHHhCceEEE
Confidence 56654322 224578889999999999999999999999998877665542 22467999999 7899999999
Q ss_pred EEEccCcceeeeEEEEEEeeccCCCCC
Q psy2776 747 VATNELGSATHGARVTVDVEKVGRPSI 773 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~~~~~~pp~~ 773 (803)
.|+|.+|++++++.|.| ..+|.+
T Consensus 80 ~a~N~~G~~~~~~~v~V----~~~P~i 102 (103)
T d1wwbx_ 80 IAKNEYGKDEKQISAHF----MGWPGI 102 (103)
T ss_dssp EEECSSCEEEEEEEECC----SCCCCC
T ss_pred EEeccCCEEEEEEEEEE----EeCCCC
Confidence 99999999999988887 345544
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.7e-13 Score=111.67 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=69.5
Q ss_pred CeeEecc-ceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 673 PLFIERF-EEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 673 p~~~~~~-~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
|.++..+ ....+.+|+++.|.|.+. |.|.|.|.|++++.++.. ........+|.|.++ +.+|+|.|+|+|+|
T Consensus 3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v-~~~D~G~Y~C~Asn 76 (90)
T d1gsma1 3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNA-SLSAAGTRVCVGSC 76 (90)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSC-CGGGCEEEEEEEEE
T ss_pred CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCcc-ChhhCCcEEEEEEe
Confidence 3444444 457788999999999885 789999999998877621 233456678999999 89999999999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
..|..+.++.|.|
T Consensus 77 ~~g~~~~s~~l~V 89 (90)
T d1gsma1 77 GGRTFQHTVQLLV 89 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEE
Confidence 9999999998887
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.1e-13 Score=110.60 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=67.7
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
...+..|+.+.|.|.+.|.|.|.+.|++++..+..+. ........+|.|.++ +.+|+|.|+|+|.|..|..+.++.
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~N~~g~~~~~~~ 85 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPV-SFGNEHSYLCTATCESRKLEKGIQ 85 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSC-CGGGCSEEEEEEEETTEEEEEEEE
T ss_pred cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecc-cccccceEEEEEEeCCCEEEEEEE
Confidence 3556789999999999999999999999887664432 234466778999999 799999999999999999999998
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|.|
T Consensus 86 v~V 88 (90)
T d1vcaa2 86 VEI 88 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=2.3e-13 Score=111.30 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=69.6
Q ss_pred eEeccceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
++..+....+.+|+++.|.|.+. |.|.|.+.|+|++..+..+... ..+. .|.|.++ +.+|+|.|+|.|+|.+|
T Consensus 5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~~--~L~i~~v-~~~d~G~Y~C~a~N~~G 78 (89)
T d1gl4b_ 5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM---DFNG--ILTIRNV-QPSDAGTYVCTGSNMFA 78 (89)
T ss_dssp EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE---EETT--EEEECSC-CGGGCEEEEEEEECSSC
T ss_pred EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE---eece--EEEEecC-CcccCEEEEEEEEECCC
Confidence 44456678899999999999997 5788999999998887665321 2233 6999999 79999999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
.++.++.|.|+
T Consensus 79 ~~~~~~~l~V~ 89 (89)
T d1gl4b_ 79 MDQGTATLHVQ 89 (89)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEEC
Confidence 99999988874
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.8e-13 Score=114.44 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=71.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee----CceEEEEEecCCCCCCceeEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD----GENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~----~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
||+|+.... ...+....|.|.+.|.|.|.+.|+|||.+|..+.++.+... ...+.|.|.++ +.+|+|.|+|+
T Consensus 5 PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~ 80 (105)
T d1wwca_ 5 PPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP-THYNNGNYTLI 80 (105)
T ss_dssp CCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESC-CGGGCEEEEEE
T ss_pred CCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeec-ccccceEEEEE
Confidence 677654332 22455677999999999999999999999988877654432 23467999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|+|.+|.++.++.|.|.
T Consensus 81 a~N~~G~~~~~~~v~V~ 97 (105)
T d1wwca_ 81 AKNPLGTANQTINGHFL 97 (105)
T ss_dssp EEETTEEEEEEEEECCS
T ss_pred EEcCCCEEEEEEEEEEE
Confidence 99999999999988884
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.5e-13 Score=111.54 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=72.2
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCC--eEEEEEeeeccCcCeEEEEEEEcCCCCe-EE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGST-SL 592 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~ 592 (803)
..+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+..+..... ...|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus 4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~ 83 (91)
T d1rhfa1 4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ 83 (91)
T ss_dssp EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECC
T ss_pred eeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEE
Confidence 36788999999999999999999999999999998776655554433 4689999999999999999999999985 56
Q ss_pred EEEEEEe
Q psy2776 593 DLSLQVL 599 (803)
Q Consensus 593 s~~l~V~ 599 (803)
.+.|.|.
T Consensus 84 ~~~l~V~ 90 (91)
T d1rhfa1 84 PVWLTVE 90 (91)
T ss_dssp CEEEEEE
T ss_pred EEEEEEE
Confidence 7888875
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.43 E-value=1e-13 Score=114.66 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=73.0
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.|.|...+.+..+.+|+++.|.|.+.|.|.| .+.|++||.++..+....... ....+|.|.++ +.+|+|.|+|.|.|
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~L~i~~v-~~~D~G~Y~C~a~N 79 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSLVFLRP-QASDEGHYQCFAET 79 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-TTSCCEEESSC-CGGGCEEEEEEEEE
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec-ccceEEEEecc-ChhcCeEEEEEEEe
Confidence 5888888889999999999999999999977 699999999997665544333 33347999999 78999999999999
Q ss_pred cCccee-eeEEEE
Q psy2776 751 ELGSAT-HGARVT 762 (803)
Q Consensus 751 ~~G~~~-~~~~l~ 762 (803)
.+|... ..+.|+
T Consensus 80 ~~G~~~s~~v~l~ 92 (94)
T d1biha1 80 PAGVASSRVISFR 92 (94)
T ss_dssp TTEEEECCCEEEE
T ss_pred CCCEEEEEEEEEE
Confidence 999864 444443
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.7e-13 Score=113.85 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee---CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~---~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
.|+|. .+.+..|.+|+++.|.|.+.|.|.|.+.|++ ++..+.......+.......+|.|.++ ..+|+|.|+|+|
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a 79 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT-TKRDAGKYRCMI 79 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSC-CGGGCSEEEEEE
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCC-CHHHCeEEEEEE
Confidence 68887 4889999999999999999999988755433 333332222222333344568999999 789999999999
Q ss_pred EccCcce-eeeEEEEEE
Q psy2776 749 TNELGSA-THGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~-~~~~~l~V~ 764 (803)
.|..|.. +..+.|.|+
T Consensus 80 ~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 80 RTEGGVGISNYAELVVK 96 (96)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCeEEEEEEEEEEC
Confidence 9999987 555888874
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=3.1e-13 Score=113.12 Aligned_cols=90 Identities=30% Similarity=0.565 Sum_probs=74.1
Q ss_pred CCeeeccCc--CeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-----eEEEecCeeEEEEecCCCCcceEEEEEE
Q psy2776 144 APVIQEPLK--DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-----NITYENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 144 ~p~i~~~~~--~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
||.|...+. +..+..|+++.|.|.+.|.|.|.+.|++++..+... .........+|.|.++..+|+|.|+|.|
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 82 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence 456655443 345678999999999999999999999999987532 2334456688999999999999999999
Q ss_pred EcCCcCeeeEEEEEEee
Q psy2776 217 TNEAGTAETSCTLLVQG 233 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~ 233 (803)
.|..|....++.|.|..
T Consensus 83 ~N~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 83 ENKAGEQDASIHLKVFA 99 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCEEEEEEEEEEEE
Confidence 99999999999998865
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=3.6e-13 Score=111.76 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=72.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.+. ..+..+.+|++++|+|.+.+ |.+.+.|+++|..|..+.++.+..+.. +|.|.++ +.+|+|.|+|.|.|.
T Consensus 5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~--~L~I~~v-~~~d~G~Y~C~a~N~ 78 (96)
T d1l6za2 5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPI-KREDAGEYQCEISNP 78 (96)
T ss_dssp CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTT--EEEECSC-CGGGCEEEEEEEESS
T ss_pred CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCce--EEEEecc-chhhceEEEEEEEeC
Confidence 45443 35678999999999999876 668999999999999988887765544 7999999 789999999999999
Q ss_pred Ccce-eeeEEEEEE
Q psy2776 752 LGSA-THGARVTVD 764 (803)
Q Consensus 752 ~G~~-~~~~~l~V~ 764 (803)
+|.. +..+.|.|.
T Consensus 79 ~g~~~S~~~~L~V~ 92 (96)
T d1l6za2 79 VSVRRSNSIKLDII 92 (96)
T ss_dssp SCCEECCCCEEEEC
T ss_pred CCCeEEEeEEEEEE
Confidence 9988 467888884
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.41 E-value=2.2e-13 Score=111.68 Aligned_cols=86 Identities=30% Similarity=0.473 Sum_probs=71.3
Q ss_pred CCeeec-cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 144 APVIQE-PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 144 ~p~i~~-~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
+|.|.. .+.+..+.+|+.++|.|.+.|.|.|.+.|+|++...... .......|.|.++..+|+|.|+|.|.|..|.
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 80 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDFEDEGTYECEAENIKGR 80 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC---CSBSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE---eeeeeeEEEeCCCCccCCEEEEEEEEECCCE
Confidence 455554 367888999999999999999999999999977544322 2234467999999999999999999999999
Q ss_pred eeeEEEEEEe
Q psy2776 223 AETSCTLLVQ 232 (803)
Q Consensus 223 ~~~s~~l~V~ 232 (803)
...++.|.|+
T Consensus 81 ~~~~~~l~V~ 90 (91)
T d1cs6a3 81 DTYQGRIIIH 90 (91)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 9888888885
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.1e-13 Score=108.68 Aligned_cols=84 Identities=26% Similarity=0.509 Sum_probs=70.9
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC--eEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~--~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|...+.+..+.+|+++.|.|.+. .|.+.+.|+++|.++..+.+ +.+..++...+|.|.++ +.+|+|.|+|.|.|.
T Consensus 3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~- 79 (90)
T d1x44a1 3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA-TKADAAEYSVMTTGG- 79 (90)
T ss_dssp CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEE-CTTTCSEEEEEETTE-
T ss_pred EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECcc-ccccCEEEEEEEecc-
Confidence 44566788999999999999994 68899999999999876654 66777888899999999 799999999999884
Q ss_pred cceeeeEEEEEE
Q psy2776 753 GSATHGARVTVD 764 (803)
Q Consensus 753 G~~~~~~~l~V~ 764 (803)
..++.|+|+
T Consensus 80 ---~~~a~l~V~ 88 (90)
T d1x44a1 80 ---QSSAKLSVD 88 (90)
T ss_dssp ---EEEEEEEEE
T ss_pred ---eEEEEEEEE
Confidence 456777775
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.5e-13 Score=110.71 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=63.1
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
...+.+|++++|.|.+.|.|.|.+.|++++..+. ..+. .|.|.++ +.+|+|.|+|.|.|..|..+..+.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------~~~~--~l~i~~v-~~~DsG~Y~C~a~N~~g~~~~~~~ 76 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------QGGK--TLSVSQL-ELQDSGTWTCTVLQNQKKVEFKID 76 (84)
T ss_dssp SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------EESS--EEEESSC-CGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CeEEECCCeEEEEEEeEcCCchheEEEeecccce--------eeee--eeeeeec-ccccccEEEEEEEeCCCEEEEEEE
Confidence 4568899999999999999999999999866542 2222 6899999 799999999999999999999888
Q ss_pred EEEEe
Q psy2776 761 VTVDV 765 (803)
Q Consensus 761 l~V~~ 765 (803)
|.|.+
T Consensus 77 v~V~~ 81 (84)
T d2nxyb2 77 IVVLA 81 (84)
T ss_dssp ECEEC
T ss_pred EEEEe
Confidence 88853
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.2e-13 Score=108.73 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=70.9
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+............+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~ 89 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence 35567899999999999999999999998877766666666777899999999999999999999999999999988875
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.40 E-value=9.5e-14 Score=115.47 Aligned_cols=82 Identities=24% Similarity=0.386 Sum_probs=70.0
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEE-EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR-IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~-~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+.+.+|+++.|.|.+.|.|.|.+.|+|||.++....+.. .....+.++|.|.++..+|+|.|+|.|+|..|..+.++.|
T Consensus 15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 94 (97)
T d3dara1 15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 94 (97)
T ss_dssp EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence 567889999999999999999999999999997654322 2233345789999999999999999999999999999999
Q ss_pred EEe
Q psy2776 597 QVL 599 (803)
Q Consensus 597 ~V~ 599 (803)
.|.
T Consensus 95 ~Vl 97 (97)
T d3dara1 95 DVV 97 (97)
T ss_dssp EEC
T ss_pred EEC
Confidence 873
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=7.2e-13 Score=107.82 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=71.0
Q ss_pred CeeeccCcCeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
+.+..++....+.+|+++.|.|.+. |.|.|.|.|++.+..+.. .........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 4 ~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~ 81 (90)
T d1gsma1 4 LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF 81 (90)
T ss_dssp EEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred cEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee--eeccCceeeEEcCccChhhCCcEEEEEEeCCCcE
Confidence 3444444557788999999999886 789999999998876643 3345667899999999999999999999999999
Q ss_pred eeEEEEEEe
Q psy2776 224 ETSCTLLVQ 232 (803)
Q Consensus 224 ~~s~~l~V~ 232 (803)
+.++.|.|.
T Consensus 82 ~~s~~l~Vy 90 (90)
T d1gsma1 82 QHTVQLLVY 90 (90)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 999998874
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.6e-13 Score=109.41 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCCeeEeccce-eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 671 QAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 671 ~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
.+|.|+..+.. ..|.+|+++.|.|.+. .|.|.+.|++||..|..+ .++.+..++....|.|.++ ..+|+|.|+|.|
T Consensus 4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a 81 (94)
T d1pd6a_ 4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQC-SLADDAAYQCVV 81 (94)
T ss_dssp TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSC-SSSSCEEEEEEE
T ss_pred CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCC-CceecEEEEEEE
Confidence 36777777764 5799999999999985 599999999999999765 4677788888899999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|. +.++.|.|+
T Consensus 82 ~n~----~~s~~l~V~ 93 (94)
T d1pd6a_ 82 GGE----KCSTELFVK 93 (94)
T ss_dssp TTE----EECCEEEEE
T ss_pred eeE----EEEEEEEEE
Confidence 884 455667764
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.38 E-value=6.4e-14 Score=114.17 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=74.3
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|..++.+.++.+|+++.|.|.+ +.|.|.+.|+|||.++..+.++.+..++....|.|.++ +.+|+|.|+|.|.|..+
T Consensus 4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a~n~~~- 80 (89)
T d1tiua_ 4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNC-QLGMTGEVSFQAANAKS- 80 (89)
T ss_dssp CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSC-CSCCCSEECCBCSSCBC-
T ss_pred EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCC-ChhcCEEEEEEECceEE-
Confidence 4556778999999999999998 57999999999999999999999999999999999999 79999999999988654
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
++.|.|+
T Consensus 81 ---sa~l~V~ 87 (89)
T d1tiua_ 81 ---AANLKVK 87 (89)
T ss_dssp ---CEEEEEE
T ss_pred ---EEEEEEE
Confidence 4566664
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=7.7e-13 Score=111.01 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=69.7
Q ss_pred ecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-----CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-----EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-----~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.++...|.|.+.|.|.|++.|+|+|..|..+.+..+... ...+.|.|.+++.+|+|.|+|.|+|..|..+.++.|
T Consensus 15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 94 (103)
T d1wwbx_ 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94 (103)
T ss_dssp CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence 467778999999999999999999999988766554421 123689999999999999999999999999999999
Q ss_pred EEeeeE
Q psy2776 597 QVLGYI 602 (803)
Q Consensus 597 ~V~~~p 602 (803)
.|..+|
T Consensus 95 ~V~~~P 100 (103)
T d1wwbx_ 95 HFMGWP 100 (103)
T ss_dssp CCSCCC
T ss_pred EEEeCC
Confidence 998766
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=5.1e-13 Score=118.08 Aligned_cols=85 Identities=20% Similarity=0.380 Sum_probs=72.5
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC-----------------------------CCcEEEEecCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD-----------------------------SKACRIFIDEETSTI 566 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~-----------------------------~~~~~~~~~~~~~~L 566 (803)
..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.. ..++.+....+.++|
T Consensus 17 ~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L 96 (130)
T d1gxea_ 17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF 96 (130)
T ss_dssp CEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEE
T ss_pred CCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEE
Confidence 367789999999999999999999999998765432 123555666677899
Q ss_pred EEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 567 ~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 97 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d 130 (130)
T d1gxea_ 97 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130 (130)
T ss_dssp ECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred EECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence 9999999999999999999999999999999853
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=8.6e-13 Score=111.40 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=67.8
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec--C--CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID--E--ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~--~--~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+....|.|.+.|.|.|++.|+|+|+.|..+.+..+... . ..+.|.|.+++.+|+|.|+|.|+|..|..+.++.|.|
T Consensus 17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V 96 (105)
T d1wwca_ 17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96 (105)
T ss_dssp CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence 44566888999999999999999999988766654422 1 2367999999999999999999999999999999999
Q ss_pred eeeE
Q psy2776 599 LGYI 602 (803)
Q Consensus 599 ~~~p 602 (803)
..+|
T Consensus 97 ~~~P 100 (105)
T d1wwca_ 97 LKEP 100 (105)
T ss_dssp SCCC
T ss_pred EeCC
Confidence 8766
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.1e-14 Score=119.76 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=69.2
Q ss_pred cceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEee-------CceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 679 FEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.....+.+|+.++|.|.+ .|.|.|.+.|+|+|..+..+.++..... .....|.|.++ +.+|+|.|+|.|+|
T Consensus 9 ~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v-~~~D~G~Y~C~a~N 87 (104)
T d1nbqa2 9 NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL-SASDTGEYSCEARN 87 (104)
T ss_dssp CCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSC-CGGGCCCEEEEEEC
T ss_pred CCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCC-CcccCcEEEEEEEE
Confidence 334568899999999998 5899999999999999876554332221 22457999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
.+|.+.+++.|+|++
T Consensus 88 ~~G~~~~s~~v~v~v 102 (104)
T d1nbqa2 88 GYGTPMTSNAVRMEA 102 (104)
T ss_dssp SSSCCEECCCBCCEE
T ss_pred CCCceEEEEEEEEEE
Confidence 999998887777764
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=2e-12 Score=107.31 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=68.3
Q ss_pred EeccceeEEecCCeEEEEEEEeecCC-CceEEee-CCeeccC-CCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFR-NNKPLLS-SPKKREIF-DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~-~~~~l~~-~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
...|....+..|+++.|.|.+.|.|+ |.+.|++ +|..+.. +.++.+.. .....+|.|.++ +.+|+|.|+|.|+|.
T Consensus 4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~ 82 (97)
T d1epfa1 4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAE 82 (97)
T ss_dssp EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSC-CGGGCEEEEEEEEET
T ss_pred EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccC-chhhceEEEEEEEeC
Confidence 34456778999999999999999985 7999999 5555544 44555443 456788999999 799999999999999
Q ss_pred Ccce-eeeEEEEE
Q psy2776 752 LGSA-THGARVTV 763 (803)
Q Consensus 752 ~G~~-~~~~~l~V 763 (803)
.|.. ++++.|+|
T Consensus 83 ~G~~~~~tv~l~V 95 (97)
T d1epfa1 83 DGTQSEATVNVKI 95 (97)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEE
Confidence 9975 35566665
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.37 E-value=7e-13 Score=110.08 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=70.6
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE--ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF--IDEETSTIAIYSVVRADTSTYTVTATNAAGST-SL 592 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~ 592 (803)
+...+.+|+++.|.|.+.|.|.|.+.|+|+|..+.......+. .....++|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus 11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 90 (97)
T d1biha3 11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 90 (97)
T ss_dssp CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence 3678899999999999999999999999999999766444333 33345689999999999999999999999985 56
Q ss_pred EEEEEEe
Q psy2776 593 DLSLQVL 599 (803)
Q Consensus 593 s~~l~V~ 599 (803)
++.|.|.
T Consensus 91 s~~L~Vl 97 (97)
T d1biha3 91 SLKLTVV 97 (97)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 7888873
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.5e-12 Score=110.42 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=70.9
Q ss_pred CeeEeccc-eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe----e--------CceEEEEEecCCCCC
Q psy2776 673 PLFIERFE-EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF----D--------GENIILELKEADSET 739 (803)
Q Consensus 673 p~~~~~~~-~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~----~--------~~~~~L~i~~v~~~~ 739 (803)
|.|+.... ...+..|+++.|.|.+.|.|.|.+.|++||..+.......... . ....+|.|.++ +.+
T Consensus 2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~ 80 (107)
T d1iray3 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI-ESR 80 (107)
T ss_dssp CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSC-CGG
T ss_pred CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeec-chH
Confidence 45555443 3567889999999999999999999999999987665433221 0 01467999999 789
Q ss_pred Ccee-EEEEEEccCcceeeeEEEE
Q psy2776 740 DAGD-YKVVATNELGSATHGARVT 762 (803)
Q Consensus 740 D~G~-Y~C~a~N~~G~~~~~~~l~ 762 (803)
|.|. |+|.|.|.+|.+++.+.|+
T Consensus 81 D~g~~Y~C~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 81 FYKHPFTCFAKNTHGIDAAYIQLI 104 (107)
T ss_dssp GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred HCCcEEEEEEEeCCCeEEEEEEEE
Confidence 9995 9999999999999888876
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.9e-13 Score=110.81 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=70.8
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCC-CceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
..+|.|...+..+.+.+|+++.|.|.+.|.|+ +.|.|+|+|.++..+.+.. ..++. +|.|.++ +.+|+|.|+|.|
T Consensus 4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~-~~~~~--~L~I~~v-~~~D~G~Y~C~a 79 (93)
T d1n26a1 4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW-AGMGR--RLLLRSV-QLHDSGNYSCYR 79 (93)
T ss_dssp SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEE-EEESS--EEEECSC-CGGGCEEEEEES
T ss_pred CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEE-ecCCC--EEEECCC-ChhcCEEEEEEE
Confidence 44788888888899999999999999998876 5899999999987665543 33444 6999999 899999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|..+. ++.|.|+
T Consensus 80 ~n~~~~---t~~l~V~ 92 (93)
T d1n26a1 80 AGRPAG---TVHLLVD 92 (93)
T ss_dssp SSSCSC---EEEEEEC
T ss_pred CCcccc---EEEEEEE
Confidence 886543 4566664
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.2e-13 Score=112.61 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecC-CCceEEeeCCeeccC--CCC-eEEEeeC--ceEEEEEecCCCCCCceeEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLS--SPK-KREIFDG--ENIILELKEADSETDAGDYK 745 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~~~~l~~--~~~-~~~~~~~--~~~~L~i~~v~~~~D~G~Y~ 745 (803)
.+.|+..+....+..|+++.|.|.+.|.| .|.+.|+|++..+.. ... .....++ ....|.|.++ +.+|+|.|+
T Consensus 3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~ 81 (104)
T d2aw2a1 3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPV-LPNDNGSYR 81 (104)
T ss_dssp CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSC-CGGGCEEEE
T ss_pred ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccc-cHHHCCeEE
Confidence 35577778888999999999999999999 489999998876532 222 2222222 3467999999 789999999
Q ss_pred EEEEccCcce-eeeEEEEEE
Q psy2776 746 VVATNELGSA-THGARVTVD 764 (803)
Q Consensus 746 C~a~N~~G~~-~~~~~l~V~ 764 (803)
|.|+|..|.. +.++.|.|.
T Consensus 82 C~A~N~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 82 CSANFQSNLIESHSTTLYVT 101 (104)
T ss_dssp EEEEETTEEEECCCEEEEEE
T ss_pred EEEEcCCCeEEEEEEEEEEE
Confidence 9999999986 467888873
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.7e-13 Score=109.15 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=66.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+.+|++++|+|.+.|.|+|.+.|++++..+.. +...|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~----------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v 77 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 77 (84)
T ss_dssp SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CeEEECCCeEEEEEEeEcCCchheEEEeeccccee----------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence 35688999999999999999999999998765432 23578999999999999999999999999999999
Q ss_pred EEeeeE
Q psy2776 597 QVLGYI 602 (803)
Q Consensus 597 ~V~~~p 602 (803)
.|.+.|
T Consensus 78 ~V~~~~ 83 (84)
T d2nxyb2 78 VVLAFQ 83 (84)
T ss_dssp CEECCC
T ss_pred EEEecC
Confidence 998754
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=8.3e-13 Score=111.69 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=65.3
Q ss_pred cCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC-------ceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG-------ENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~-------~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
++....|.|.+.|.|.|.+.|++||.+|..+.+....... ..+.|.|.++ ..+|+|.|+|+|.|.+|.++++
T Consensus 14 ~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~A~N~~G~~~~~ 92 (107)
T d1he7a_ 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLAANPFGQASAS 92 (107)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESC-CGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcc-cHHHCcEEEEEEEeCCCEEEEE
Confidence 3445567779999999999999999999888776555422 2467999999 7899999999999999999999
Q ss_pred EEEEEE
Q psy2776 759 ARVTVD 764 (803)
Q Consensus 759 ~~l~V~ 764 (803)
+.|.|.
T Consensus 93 i~v~v~ 98 (107)
T d1he7a_ 93 IMAAFM 98 (107)
T ss_dssp EEECCC
T ss_pred EEEEEE
Confidence 988884
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=7e-13 Score=113.25 Aligned_cols=92 Identities=21% Similarity=0.335 Sum_probs=67.9
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEE--------EeeCceEEEEEecCCCCCC
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKRE--------IFDGENIILELKEADSETD 740 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~--------~~~~~~~~L~i~~v~~~~D 740 (803)
+..|.+.. ...+.+|+++.|.|.+ .|.|.+.+.|++++.++........ ........|.|.++ +.+|
T Consensus 3 P~~p~~~~---~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v-~~~D 78 (110)
T d1f97a2 3 PSKPTISV---PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFD 78 (110)
T ss_dssp CCCCEEEC---CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSC-CGGG
T ss_pred CccceeCC---CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCC-CccC
Confidence 33555543 3467899999999998 4899999999999998865543222 22233457999999 7999
Q ss_pred ceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 741 AGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+|.|+|.|+|.+|....+..+.++|
T Consensus 79 ~G~Y~C~a~N~~G~~~~s~~v~l~V 103 (110)
T d1f97a2 79 SGEYYCQAQNGYGTAMRSEAAHMDA 103 (110)
T ss_dssp CEEEEEEEECSSSCCEECCCEEEEE
T ss_pred CEEEEEEEEECCCcEEEEEEEEEEE
Confidence 9999999999999987766666554
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=1.1e-12 Score=107.60 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=71.8
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
+.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..... ...+|.|.+++.+|+|.|+|.|.|..+
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n~~~ 80 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILAR 80 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeee-eeeeEEECCCCHHhCEEEEEEEEECcC
Confidence 45777788999999999999999999999999999999887633 23332 235699999999999999999999888
Q ss_pred CeeeEEEEEEe
Q psy2776 222 TAETSCTLLVQ 232 (803)
Q Consensus 222 ~~~~s~~l~V~ 232 (803)
.......|.|.
T Consensus 81 ~~~~~~~i~Vi 91 (92)
T d1epfa2 81 GEINFKDIQVI 91 (92)
T ss_dssp TEEEEEEEEEE
T ss_pred CEEEEEEEEEE
Confidence 77666666664
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.7e-13 Score=111.45 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeecccee-EEEecCeeEEEEecCCCCcce-EEEEEEEcCCc
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-ITYENNVARFTVVNCSESSEG-RYTCKATNEAG 221 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g 221 (803)
.|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .........|.|.++..+|.| .|+|.|.|..|
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G 81 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 81 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence 4677778888999999999999999999999999999997776432 223445678999999999999 79999999999
Q ss_pred CeeeEEEEEE
Q psy2776 222 TAETSCTLLV 231 (803)
Q Consensus 222 ~~~~s~~l~V 231 (803)
....++.|.|
T Consensus 82 ~~~~s~~l~V 91 (92)
T d2ifga1 82 RAEVSVQVNV 91 (92)
T ss_dssp ECCEEECCCC
T ss_pred EEEEEEEEEE
Confidence 9988887765
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=2e-12 Score=105.44 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=68.5
Q ss_pred cCcCeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 150 PLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
.+....+.+|+++.|.|.+. +.|.|.+.|+|++..+...+....+ ..|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 85 (89)
T d1gl4b_ 8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN--GILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 85 (89)
T ss_dssp SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEET--TEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeec--eEEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence 45667889999999999997 6788999999998877655433333 47999999999999999999999999888888
Q ss_pred EEEe
Q psy2776 229 LLVQ 232 (803)
Q Consensus 229 l~V~ 232 (803)
|.|+
T Consensus 86 l~V~ 89 (89)
T d1gl4b_ 86 LHVQ 89 (89)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8874
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.5e-12 Score=103.26 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=67.0
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
|.|...|.+..+.+|+.+.|.|.+.|.|.| +|.|+|++..+.... ...+.|.....+|+|.|+|.|.|..|..
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~ 75 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PSPSVLNVTGVTQSTMFSCEAHNLKGLA 75 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------CcceEEecCCccccEEEEEEEEcCCCcE
Confidence 678888899999999999999999999988 899999999886432 1234566667789999999999999965
Q ss_pred e-eEEEEEEe
Q psy2776 224 E-TSCTLLVQ 232 (803)
Q Consensus 224 ~-~s~~l~V~ 232 (803)
. ..++|.|+
T Consensus 76 ~S~~~~v~Vk 85 (85)
T d1rhfa2 76 SSRTATVHLQ 85 (85)
T ss_dssp ECCCEEEEEC
T ss_pred EEEEEEEEEC
Confidence 3 46777663
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.32 E-value=1.9e-12 Score=104.96 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred eeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eee
Q psy2776 681 EKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THG 758 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~ 758 (803)
...+.+|++++|+|.+.+. |.+.+.|+|||..+... .....|.|.++ +.+|+|.|+|.|.|..|.. +..
T Consensus 9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~--------~~~~~l~i~~v-~~~dsG~Y~C~a~n~~g~~~S~~ 79 (88)
T d2fcba2 9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------RSDPNFSIPQA-NHSHSGDYHCTGNIGYTLYSSKP 79 (88)
T ss_dssp CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------SSCCEEEETTC-CGGGCEEEEEEEEETTEEEECCC
T ss_pred CCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc--------ccccccccCcc-CHHHCCeEEEEEEeCCCCEEeee
Confidence 3468899999999999654 66789999999886322 23447999999 7999999999999999976 567
Q ss_pred EEEEEEe
Q psy2776 759 ARVTVDV 765 (803)
Q Consensus 759 ~~l~V~~ 765 (803)
+.|+|++
T Consensus 80 v~l~V~~ 86 (88)
T d2fcba2 80 VTITVQA 86 (88)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 8888864
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=4.9e-12 Score=104.94 Aligned_cols=83 Identities=20% Similarity=0.408 Sum_probs=66.2
Q ss_pred ceEEeecceeEEEEEEcCcCC-CeeEEee-CCeeecC-CCcEEEE-ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-E
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-PEISWMK-NGAEITD-SKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGST-S 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~~v~W~~-~g~~i~~-~~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s 591 (803)
...+.+|+++.|.|.+.|.|+ +.+.|++ +|..+.. ..++.+. .....++|.|.++..+|+|.|+|.|+|..|.. +
T Consensus 9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 88 (97)
T d1epfa1 9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 88 (97)
T ss_dssp SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence 467889999999999999986 7999999 5555544 3455544 34556899999999999999999999999974 4
Q ss_pred EEEEEEEe
Q psy2776 592 LDLSLQVL 599 (803)
Q Consensus 592 ~s~~l~V~ 599 (803)
.++.|.|.
T Consensus 89 ~tv~l~V~ 96 (97)
T d1epfa1 89 ATVNVKIF 96 (97)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 56777763
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.3e-12 Score=105.72 Aligned_cols=89 Identities=21% Similarity=0.366 Sum_probs=73.2
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeecc-------c--eeEEEecCeeEEEEecCC-CCcceEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIK-------G--RNITYENNVARFTVVNCS-ESSEGRY 212 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~-------~--~~~~~~~~~~~L~i~~v~-~~d~G~Y 212 (803)
||.|...+....+.+|+.+.|.|.+.|.|.| .+.|++++.... . ..+........|.|.++. .+|+|.|
T Consensus 2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y 81 (101)
T d3b5ha1 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY 81 (101)
T ss_dssp SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence 6778888888899999999999999999988 699999764322 1 223445567899999998 5799999
Q ss_pred EEEEEcCCcCeeeEEEEEEe
Q psy2776 213 TCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 213 ~C~a~n~~g~~~~s~~l~V~ 232 (803)
+|.|.|..|.....+.|.|.
T Consensus 82 ~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 82 RCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEC
Confidence 99999999999888888873
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6.3e-12 Score=102.46 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=67.5
Q ss_pred ccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEE
Q psy2776 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 515 ~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
+....+.+|+++.|.|.+. .|.+.+.|+|+|.++..+. ++.+..++..++|.|.++..+|+|.|+|.|.| ...
T Consensus 7 l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~ 81 (90)
T d1x44a1 7 LEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQS 81 (90)
T ss_dssp CCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEE
T ss_pred CCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceE
Confidence 3578899999999999984 6889999999999987664 36666667788999999999999999999976 456
Q ss_pred EEEEEEee
Q psy2776 593 DLSLQVLG 600 (803)
Q Consensus 593 s~~l~V~~ 600 (803)
++.|.|..
T Consensus 82 ~a~l~V~~ 89 (90)
T d1x44a1 82 SAKLSVDL 89 (90)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 67777753
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.31 E-value=4e-12 Score=108.25 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=70.2
Q ss_pred CCCeeecc-CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-------e---------EEEecCeeEEEEecCC
Q psy2776 143 EAPVIQEP-LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-------N---------ITYENNVARFTVVNCS 205 (803)
Q Consensus 143 ~~p~i~~~-~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-------~---------~~~~~~~~~L~i~~v~ 205 (803)
..|.|... |.+..+.+|+++.|.|.+.|.|.|.|.|+|++...... . .........|.|.++.
T Consensus 3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 82 (109)
T d2fdbp2 3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 82 (109)
T ss_dssp SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence 45677664 68899999999999999999999999999976432110 0 0011234689999999
Q ss_pred CCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 206 ESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
.+|+|.|+|.|.|..|....++.|.|
T Consensus 83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 83 FEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 99999999999999999999999887
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.9e-12 Score=108.26 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=68.8
Q ss_pred EEeecceeE---EEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC-------CeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 519 RLSVKSQWK---VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-------ETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 519 ~v~~g~~v~---l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~-------~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.+..|..+. +.|.+.|.|.|.+.|+++|..|..+.+....... ..+.|.|.++..+|+|.|+|.|+|..|
T Consensus 8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G 87 (107)
T d1he7a_ 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 87 (107)
T ss_dssp CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence 344455555 4558999999999999999999877665554322 236799999999999999999999999
Q ss_pred CeEEEEEEEEeeeE
Q psy2776 589 STSLDLSLQVLGYI 602 (803)
Q Consensus 589 ~~s~s~~l~V~~~p 602 (803)
..+.++.|.|..+|
T Consensus 88 ~~~~~i~v~v~~~P 101 (107)
T d1he7a_ 88 QASASIMAAFMDNP 101 (107)
T ss_dssp EEEEEEEECCCSCT
T ss_pred EEEEEEEEEEEcCC
Confidence 99999999998877
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=2.5e-12 Score=106.52 Aligned_cols=83 Identities=12% Similarity=0.162 Sum_probs=70.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE-EEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS-LDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s-~s~~ 595 (803)
...+.+|+.+.|+|.+.+ +++.+.|+++|..+..+.+..+.. +.++|.|.++..+|+|.|+|.|.|..|... ..+.
T Consensus 12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~ 88 (96)
T d1l6za2 12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIK 88 (96)
T ss_dssp CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET--TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCE
T ss_pred ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC--CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEE
Confidence 567899999999999876 668999999999998887776543 456899999999999999999999999874 5688
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 89 L~V~~~P 95 (96)
T d1l6za2 89 LDIIFDP 95 (96)
T ss_dssp EEECCSC
T ss_pred EEEEcCC
Confidence 9987655
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2e-12 Score=105.75 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=70.1
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCC-CeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT-PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
..+|.+...+..+.+.+|+.+.|.|.+.+.|. ++|.|+|++..+............+|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T d1n26a1 4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83 (93)
T ss_dssp SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence 46788888888899999999999999998665 58999999988875544444445689999999999999999998754
Q ss_pred cCeeeEEEEEEe
Q psy2776 221 GTAETSCTLLVQ 232 (803)
Q Consensus 221 g~~~~s~~l~V~ 232 (803)
+ .+..|.|.
T Consensus 84 ~---~t~~l~V~ 92 (93)
T d1n26a1 84 A---GTVHLLVD 92 (93)
T ss_dssp S---CEEEEEEC
T ss_pred c---cEEEEEEE
Confidence 3 34455543
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.27 E-value=2.7e-12 Score=105.89 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=68.9
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccc--eeEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.|.|...+.++.+.+|+.+.|.|.+.|.|.| .+.|++++..+.. ..........+|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 81 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 81 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence 5778888888999999999999999998876 6999999988763 234444556789999999999999999999999
Q ss_pred cCee
Q psy2776 221 GTAE 224 (803)
Q Consensus 221 g~~~ 224 (803)
|...
T Consensus 82 G~~~ 85 (94)
T d1biha1 82 GVAS 85 (94)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 9754
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.27 E-value=8.3e-13 Score=111.33 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=64.5
Q ss_pred ceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 680 EEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
..+.+.+|+.+.|.|.+ .|.|.|.+.|+|||.++.......+........|.|.++ +.+|+|.|+|.|.|..|..+.+
T Consensus 12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~g~~~~~ 90 (105)
T d1cs6a2 12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKT-EASDLGNYSCFATSHIDFITKS 90 (105)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSC-CGGGCEEEEEEEEEEETTEEEE
T ss_pred CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeeccc-ccccCcEEEEEEEECCCCEEEE
Confidence 45789999999999997 789999999999998775443333333334447999999 7999999999999999998766
Q ss_pred EE
Q psy2776 759 AR 760 (803)
Q Consensus 759 ~~ 760 (803)
+.
T Consensus 91 v~ 92 (105)
T d1cs6a2 91 VF 92 (105)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-12 Score=106.01 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=66.0
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
....+.+|+++.|.|.+.| |.|.+.|+++|.++...........+. .|.|.++ +.+|+|.|+|.|.|.+|..+...
T Consensus 5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v-~~~DsG~Y~C~A~n~~g~~~~~~ 80 (92)
T d1olza1 5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNL-SEGDSGVYQCLSEERVKNKTVFQ 80 (92)
T ss_dssp EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSC-CGGGCEEEEEEEEEECSSSEEEE
T ss_pred hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee--EEEECCC-CHHHCcEEEEEEEEcCCCEEEEE
Confidence 4578999999999999998 778999999999987654433333333 5999999 79999999999999999887766
Q ss_pred EEEEE
Q psy2776 760 RVTVD 764 (803)
Q Consensus 760 ~l~V~ 764 (803)
.|.+.
T Consensus 81 ~l~~~ 85 (92)
T d1olza1 81 VVAKH 85 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=6.8e-13 Score=112.30 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=68.8
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee----C----ceEEEEEecCCCCCCceeE
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD----G----ENIILELKEADSETDAGDY 744 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~----~----~~~~L~i~~v~~~~D~G~Y 744 (803)
+.+........+.+|+++.|.|.+.|.|.|.+.|+|++..+........... . ...+|.|.++ +.+|+|.|
T Consensus 5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y 83 (105)
T d1nbqa1 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV-TREDTGTY 83 (105)
T ss_dssp CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCC-CTTSCSEE
T ss_pred eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecc-cccceeeE
Confidence 3444555567899999999999999999999999997654432111100000 0 1136999999 79999999
Q ss_pred EEEEEccCcceeeeEEEEEEe
Q psy2776 745 KVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 745 ~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+|.|.|.+|.+...+.|+|.|
T Consensus 84 ~C~a~n~~G~~~~~~~v~v~V 104 (105)
T d1nbqa1 84 TCMVSEEGGNSYGEVKVKLIV 104 (105)
T ss_dssp EEEEEETTSSCEECCEEECCE
T ss_pred EEEEEECCCCEEEEEEEEEEE
Confidence 999999999999888888754
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=7.3e-12 Score=106.61 Aligned_cols=90 Identities=17% Similarity=0.332 Sum_probs=72.7
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccC---CCeeEEEEcCeecc----ceeEEEe--------cCeeEEEEecCCCCcc
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVP---TPDIKWYKDDSLIK----GRNITYE--------NNVARFTVVNCSESSE 209 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p---~p~i~W~~~~~~~~----~~~~~~~--------~~~~~L~i~~v~~~d~ 209 (803)
|.|...|.+..+.+|++++|.|.+.|.| .|.|.|+|++.... ...+... .....|.|.+++.+|+
T Consensus 5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 84 (110)
T d2avga1 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT 84 (110)
T ss_dssp CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence 5677778899999999999999999988 57899999874321 1111111 1246799999999999
Q ss_pred eEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 210 GRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
|.|+|.|.|..|....++.|.|..+
T Consensus 85 G~Y~C~a~N~~G~~~~~~~L~V~~~ 109 (110)
T d2avga1 85 GGYRCEVSTKDKFDCSNFNLTVHEA 109 (110)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEESC
T ss_pred cEEEEEEEECCCeEEEEEEEEEEec
Confidence 9999999999999999999999764
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.8e-12 Score=109.36 Aligned_cols=93 Identities=22% Similarity=0.425 Sum_probs=68.1
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCCCcEE--------EEecCCeEEEEEeeec
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDSKACR--------IFIDEETSTIAIYSVV 572 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~~~~~--------~~~~~~~~~L~i~~v~ 572 (803)
||.+|.+.. ...+.+|+++.|.|.+. |.|.+.++|+|+|..+....... .......+.|.|.+++
T Consensus 2 PP~~p~~~~------~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~ 75 (110)
T d1f97a2 2 PPSKPTISV------PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 75 (110)
T ss_dssp CCCCCEEEC------CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCC
T ss_pred CCccceeCC------CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCC
Confidence 566655432 34688999999999985 89999999999998876543222 1223345689999999
Q ss_pred cCcCeEEEEEEEcCCCCeEEE--EEEEEee
Q psy2776 573 RADTSTYTVTATNAAGSTSLD--LSLQVLG 600 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~~s~s--~~l~V~~ 600 (803)
.+|+|.|+|.|+|..|....+ +.|.|..
T Consensus 76 ~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~ 105 (110)
T d1f97a2 76 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105 (110)
T ss_dssp GGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccCCEEEEEEEEECCCcEEEEEEEEEEEEe
Confidence 999999999999999987654 4555543
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=5e-13 Score=112.87 Aligned_cols=92 Identities=17% Similarity=0.363 Sum_probs=70.8
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEe-------cCCeEEEEEeeecc
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFI-------DEETSTIAIYSVVR 573 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~-------~~~~~~L~i~~v~~ 573 (803)
||.++.+.. ...+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+....+..... ....+.|.|.++..
T Consensus 2 PP~~p~~~~------~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~ 75 (104)
T d1nbqa2 2 PPSKPTVNI------PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 75 (104)
T ss_dssp CCCCCCCCC------BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG
T ss_pred CCcccccCC------CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCc
Confidence 555554432 4568899999999997 589999999999999887654332221 22346899999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+|+|.|+|.|+|..|....+..|.|.
T Consensus 76 ~D~G~Y~C~a~N~~G~~~~s~~v~v~ 101 (104)
T d1nbqa2 76 SDTGEYSCEARNGYGTPMTSNAVRME 101 (104)
T ss_dssp GGCCCEEEEEECSSSCCEECCCBCCE
T ss_pred ccCcEEEEEEEECCCceEEEEEEEEE
Confidence 99999999999999998877666554
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.4e-13 Score=117.27 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=75.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecC-CCceEEeeCCeeccCCC--CeEEEe----eCceEEEEEecCCCCCC-cee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSP--KKREIF----DGENIILELKEADSETD-AGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~~~~l~~~~--~~~~~~----~~~~~~L~i~~v~~~~D-~G~ 743 (803)
||.|. .+....+.+|+.+.|.|.+.|.| .+.+.|++++..+..+. ++.+.. ++..++|.|.++ +.+| +|.
T Consensus 7 Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v-~~~D~~G~ 84 (115)
T d2crya1 7 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI-VRADFQTI 84 (115)
T ss_dssp SCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC-CHHHHHSC
T ss_pred CCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEecc-chhcCCeE
Confidence 66654 56677889999999999999964 55799999999887543 333332 123467999999 6888 799
Q ss_pred EEEEEEccCcceeeeEEEEEEeeccCCC
Q psy2776 744 YKVVATNELGSATHGARVTVDVEKVGRP 771 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V~~~~~~pp 771 (803)
|+|.|+|.+|.+++.+.|.|+......|
T Consensus 85 Y~C~A~N~~G~~~~~~~L~V~~~~~~~P 112 (115)
T d2crya1 85 YNCTAWNSFGSDTEIIRLKEQGSEMSGP 112 (115)
T ss_dssp EEEEEECSSCEEEEEECCCCSCSSCCCC
T ss_pred EEEEEEECCCeEEEEEEEEEECCCCCCC
Confidence 9999999999999999998875444444
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.9e-12 Score=103.41 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=62.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+.+|+.+.|.|.+.|.|.|.++|+|+|..+.... .+.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 13 ~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l 79 (84)
T d2oz4a3 13 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREVTV 79 (84)
T ss_dssp EEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEEEE
Confidence 5778899999999999999999999999998766432 345678899999999999999999999999
Q ss_pred EEee
Q psy2776 597 QVLG 600 (803)
Q Consensus 597 ~V~~ 600 (803)
.|..
T Consensus 80 ~V~~ 83 (84)
T d2oz4a3 80 NVLS 83 (84)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9865
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.5e-12 Score=109.37 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=68.2
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC--eEEEe------eCceEEEEEecCCCCCCceeE
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIF------DGENIILELKEADSETDAGDY 744 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~--~~~~~------~~~~~~L~i~~v~~~~D~G~Y 744 (803)
|.+........+.+|+++.|.|.+.|.|.|.+.|++++..+..... ..... .....+|.|.++ +.+|+|.|
T Consensus 2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v-~~~D~G~Y 80 (102)
T d1f97a1 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSV-TRKDNGEY 80 (102)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCC-CGGGCEEE
T ss_pred CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeEC-CccCCEEE
Confidence 3455566678899999999999999999999999986443211000 00000 001236999999 79999999
Q ss_pred EEEEEccCcceeeeEEEEEEe
Q psy2776 745 KVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 745 ~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|.|.|..|.....+.|+|.|
T Consensus 81 ~C~a~n~~g~~~~~~~v~v~V 101 (102)
T d1f97a1 81 TCMVSEEGGQNYGEVSIHLTV 101 (102)
T ss_dssp EEEEEETTSSSEEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEEEEE
Confidence 999999999999888888765
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.6e-12 Score=110.15 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=69.0
Q ss_pred cceEEeecceeEEEEEEcCcC---CCeeEEeeCCeeec---CCCcEEEEec------CCeEEEEEeeeccCcCeEEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFP---RPEISWMKNGAEIT---DSKACRIFID------EETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p---~~~v~W~~~g~~i~---~~~~~~~~~~------~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
....+.+|+++.|.|.+.|.| .|.+.|+|++.... ...++.+... ...+.|.|.++..+|+|.|+|.|
T Consensus 8 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 87 (113)
T d2dava1 8 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV 87 (113)
T ss_dssp CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEE
T ss_pred ceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEE
Confidence 468899999999999999998 57999999875432 2233332211 12367999999999999999999
Q ss_pred EcCCCCeEEEEEEEEeeeE
Q psy2776 584 TNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 584 ~n~~g~~s~s~~l~V~~~p 602 (803)
.|..|..+.++.|.|..++
T Consensus 88 ~N~~G~~~~~~~L~V~~~~ 106 (113)
T d2dava1 88 TYKDKFDSCSFDLEVHEST 106 (113)
T ss_dssp ECSSCEEEECCEEEEECCC
T ss_pred EeCCCEEEEEEEEEEEcCC
Confidence 9999999999999997654
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.1e-11 Score=103.08 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=64.0
Q ss_pred eEEecCCeEEEEE------EEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 682 KTVKEKGTIRLMA------KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 682 ~~v~~g~~v~L~C------~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.+..|+...|.| .+.|.|.|.+.|++||.+|..+.+.....++ .|.|.++ ..+|+|.|+|.|.|.+|..
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v-~~~D~G~Y~C~a~n~~~g~ 84 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNV-AEKHRGNYTCHASYTYLGK 84 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSC-CGGGCEEEEEEEEEEETTE
T ss_pred EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEccc-ccccCcEEEEEEEECcCCE
Confidence 5678899999999 7789999999999999999877665544443 5999999 7999999999999999866
Q ss_pred eeeEEEEE
Q psy2776 756 THGARVTV 763 (803)
Q Consensus 756 ~~~~~l~V 763 (803)
..++...|
T Consensus 85 ~~~vt~~i 92 (103)
T d1iray2 85 QYPITRVI 92 (103)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 54444443
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.24 E-value=1.5e-12 Score=105.93 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=69.6
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
.+..+.+|+++.|.|.+ +.|.|.+.|+|||..+..+.++.+...++.+.|.|.++..+|+|.|+|.|.|..+ ++.
T Consensus 9 ~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa~ 83 (89)
T d1tiua_ 9 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----AAN 83 (89)
T ss_dssp CCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----CEE
T ss_pred cCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----EEE
Confidence 47889999999999998 5789999999999999999999998888889999999999999999999977544 455
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 84 l~V~ 87 (89)
T d1tiua_ 84 LKVK 87 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.24 E-value=8.5e-12 Score=101.14 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=60.2
Q ss_pred eeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eee
Q psy2776 681 EKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THG 758 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~ 758 (803)
...+.+|++++|.|.+.+ .|.+.+.|+|||..+... .....|.|.++ +.+|+|.|+|+|.|..|.. +..
T Consensus 11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~--------~~~~~l~I~~v-~~~dsG~Y~C~a~n~~~~~~S~~ 81 (89)
T d1fnla2 11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKA-TLKDSGSYFCRGLVGSKNVSSET 81 (89)
T ss_dssp CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------EECCCEEESSC-CGGGCEEEEEEEEETTEEEECCC
T ss_pred CCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee--------ccccccEECcc-ceeccceEEEEEEeCCCCeEEee
Confidence 456889999999999874 466689999999886321 22336899999 7999999999999999876 467
Q ss_pred EEEEEE
Q psy2776 759 ARVTVD 764 (803)
Q Consensus 759 ~~l~V~ 764 (803)
+.|+|+
T Consensus 82 v~itV~ 87 (89)
T d1fnla2 82 VNITIT 87 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777775
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1e-11 Score=100.70 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=61.7
Q ss_pred eeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eee
Q psy2776 681 EKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THG 758 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~ 758 (803)
...+.+|+.++|.|.+.+. |...+.|||||..+.... ....|.|.++ +.+|+|.|.|+|.|..|.. +..
T Consensus 9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~-~~~dsG~Y~C~a~n~~~~~~S~~ 79 (89)
T d1f2qa2 9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNA-TVEDSGTYYCTGKVWQLDYESEP 79 (89)
T ss_dssp CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSC-CGGGCEEEEEEEEETTEEEECCC
T ss_pred cCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeee-eeecCcEEEEEEEeCCCCeEeee
Confidence 4568899999999999776 555899999999885432 2336999999 8999999999999998876 567
Q ss_pred EEEEEEe
Q psy2776 759 ARVTVDV 765 (803)
Q Consensus 759 ~~l~V~~ 765 (803)
+.|+|..
T Consensus 80 v~i~V~~ 86 (89)
T d1f2qa2 80 LNITVIK 86 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 7777753
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.4e-12 Score=103.95 Aligned_cols=89 Identities=10% Similarity=0.087 Sum_probs=71.3
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEee-cCCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKA-SPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
||++...+....+.+|+.++|+|.+.| .|.+ .+.|++++..|..... ......++|.|..+ ..+|+|.|+|+|
T Consensus 4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~-~~dd~g~ytC~A 79 (103)
T d1iama1 4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVR-RDHHGAQFSCRT 79 (103)
T ss_dssp CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECC-SSCSSCEEEEEE
T ss_pred CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeee-hhHCCCEEEEEE
Confidence 677777777788999999999999987 4666 5889999998854321 12234668999988 789999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|.+|....++.+.+.
T Consensus 80 ~n~~g~~~~~~~~~~s 95 (103)
T d1iama1 80 ELDLRPQGLELFENTS 95 (103)
T ss_dssp EEECGGGTSCEEEEEC
T ss_pred EeCCCCccCeEeeeEc
Confidence 9999999888877773
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.21 E-value=7.1e-12 Score=103.93 Aligned_cols=86 Identities=22% Similarity=0.325 Sum_probs=68.5
Q ss_pred CCCeeeccCcCeeeecC---CcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecCCCCcceEEEEEE
Q psy2776 143 EAPVIQEPLKDSVAGFQ---SSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G---~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
.+|.|...|.+..+.+| +++.|.|.+.|.|.|.+.|++++..+.. ..+... ....|.|..+..+|+|.|+|.|
T Consensus 3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a 81 (97)
T d1cs6a1 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQCVA 81 (97)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE-TTEEEEESCCHHHHCEEEEEEE
T ss_pred cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee-eeeEEEEecccccCCEEEEEEE
Confidence 35777777888777665 7899999999999999999999998753 223333 3467889999999999999999
Q ss_pred EcCCcCeee-EEEE
Q psy2776 217 TNEAGTAET-SCTL 229 (803)
Q Consensus 217 ~n~~g~~~~-s~~l 229 (803)
.|..|...+ +++|
T Consensus 82 ~N~~G~~~S~~a~L 95 (97)
T d1cs6a1 82 TNARGTVVSREASL 95 (97)
T ss_dssp EETTEEEECCCEEE
T ss_pred EECCCEEEEEEEEE
Confidence 999997643 5555
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.2e-11 Score=102.43 Aligned_cols=84 Identities=7% Similarity=-0.020 Sum_probs=62.0
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEee---CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE-
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMK---NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS- 591 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~---~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s- 591 (803)
....+.+|+++.|.|.+.|.|.|.+.|++ ++..+.......+......++|.|.++..+|+|.|+|.|.|..|...
T Consensus 9 ~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 88 (96)
T d2c9aa1 9 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS 88 (96)
T ss_dssp CCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred CCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEE
Confidence 47889999999999999999988765433 23333222222333333456899999999999999999999999864
Q ss_pred EEEEEEEe
Q psy2776 592 LDLSLQVL 599 (803)
Q Consensus 592 ~s~~l~V~ 599 (803)
..+.|.|.
T Consensus 89 ~~a~L~Vk 96 (96)
T d2c9aa1 89 NYAELVVK 96 (96)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 44788773
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.8e-11 Score=101.67 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=65.9
Q ss_pred cceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCC---CcEEEEecC--CeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDS---KACRIFIDE--ETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~---~~~~~~~~~--~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
....+.+|+++.|.|.+.|.|. |.+.|+|++..+... ......... ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 90 (104)
T d2aw2a1 11 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 90 (104)
T ss_dssp EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCe
Confidence 4678899999999999999995 899999988765322 222222222 2357999999999999999999999997
Q ss_pred e-EEEEEEEEee
Q psy2776 590 T-SLDLSLQVLG 600 (803)
Q Consensus 590 ~-s~s~~l~V~~ 600 (803)
. +.++.|.|.+
T Consensus 91 ~~s~~~~l~V~e 102 (104)
T d2aw2a1 91 IESHSTTLYVTD 102 (104)
T ss_dssp EECCCEEEEEEC
T ss_pred EEEEEEEEEEEE
Confidence 5 4578888754
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.18 E-value=5.1e-12 Score=106.38 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=65.1
Q ss_pred ceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
.+.+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+....+.++......++|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v~ 92 (105)
T d1cs6a2 13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVF 92 (105)
T ss_dssp CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEE
T ss_pred CEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEEE
Confidence 5789999999999997 788999999999998765443333344445568999999999999999999999998876644
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.5e-12 Score=112.09 Aligned_cols=98 Identities=24% Similarity=0.324 Sum_probs=75.3
Q ss_pred eccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCC--CcEEEEe--cCC--eEEEEEe
Q psy2776 497 LQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDS--KACRIFI--DEE--TSTIAIY 569 (803)
Q Consensus 497 l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~--~~~~~~~--~~~--~~~L~i~ 569 (803)
|.|..||.+.. ...+.+.+|+.+.|.|.+.|.|+ +.+.|++++..+..+ .++.+.. ..+ .+.|.|.
T Consensus 2 L~V~~Pp~i~~-------~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~ 74 (115)
T d2crya1 2 LTVNGPPIISS-------TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS 74 (115)
T ss_dssp CCCCSSCCEEE-------ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECT
T ss_pred eEEecCCEEec-------CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEe
Confidence 56677775421 12466788999999999999654 579999999988765 3333332 122 3579999
Q ss_pred eeccCc-CeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 570 SVVRAD-TSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 570 ~v~~~d-sG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
++..+| +|.|+|.|+|..|.++.++.|.|...
T Consensus 75 ~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~ 107 (115)
T d2crya1 75 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 107 (115)
T ss_dssp TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred ccchhcCCeEEEEEEEECCCeEEEEEEEEEECC
Confidence 999999 79999999999999999999998764
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.16 E-value=3.9e-11 Score=96.99 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=61.3
Q ss_pred CeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCee-eEEEEE
Q psy2776 153 DSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE-TSCTLL 230 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~ 230 (803)
...+.+|++++|+|.+.+ .|.+.+.|+|++..+.. ......|.|.+++.+|+|.|+|.|.|..|... ..+.|.
T Consensus 9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~-----~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~ 83 (88)
T d2fcba2 9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF-----SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT 83 (88)
T ss_dssp CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-----ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred CCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc-----cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence 345779999999999975 46668999999976642 23456799999999999999999999988654 457777
Q ss_pred Eeee
Q psy2776 231 VQGK 234 (803)
Q Consensus 231 V~~~ 234 (803)
|+.+
T Consensus 84 V~~P 87 (88)
T d2fcba2 84 VQAP 87 (88)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 7654
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.16 E-value=3.9e-11 Score=97.11 Aligned_cols=77 Identities=10% Similarity=0.190 Sum_probs=60.5
Q ss_pred cCeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCee-eEEEE
Q psy2776 152 KDSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE-TSCTL 229 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l 229 (803)
....+.+|++++|+|.+.+ .|.+.+.|+|++..+... .....|.|.+++.+|+|.|+|.|.|..|... ..+.|
T Consensus 10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-----~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~i 84 (89)
T d1fnla2 10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 84 (89)
T ss_dssp SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred CCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-----ccccccEECccceeccceEEEEEEeCCCCeEEeeEEE
Confidence 3455789999999999874 566689999999776422 2345799999999999999999999888644 35777
Q ss_pred EEee
Q psy2776 230 LVQG 233 (803)
Q Consensus 230 ~V~~ 233 (803)
.|.+
T Consensus 85 tV~E 88 (89)
T d1fnla2 85 TITQ 88 (89)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7764
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.16 E-value=3.9e-11 Score=96.34 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=64.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+....+.+|++++|.|.+.+.|.+ .+.|++||..+..+. ..|.|.++ +.+|+|.|+|.|.|
T Consensus 4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v-~~~dsG~Y~C~a~n 72 (85)
T d2fcba1 4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT----------QPSYRFKA-NNNDSGEYTCQTGQ 72 (85)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC----------SSEEEEEC-CGGGCEEEEEECTT
T ss_pred CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc----------cceEEeec-cccCCcEEEEECCC
Confidence 4566666777889999999999999999877 588999999886542 24888999 78999999999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
..+++. +.|.|
T Consensus 73 s~~S~~--v~l~V 83 (85)
T d2fcba1 73 TSLSDP--VHLTV 83 (85)
T ss_dssp SBCCCC--EEEEE
T ss_pred Cccccc--EEEEE
Confidence 877654 45555
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=5.8e-11 Score=97.44 Aligned_cols=85 Identities=29% Similarity=0.429 Sum_probs=72.8
Q ss_pred ccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeecccc-ceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKES-ARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
..+.|+..++....+.+|+.+.|.|.++.|.+.+.|+|||..+..+ ..+.+...+..+.|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n 83 (94)
T d1pd6a_ 4 KSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 83 (94)
T ss_dssp TTSSCSEECCSEEEEETTSCEEEEEECSSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred CCCcEEEeCCCCEEECcCCeEEEEEEECCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence 4567777887777788999999999998799999999999999764 457778888889999999999999999999988
Q ss_pred ccccee
Q psy2776 383 VKSVSK 388 (803)
Q Consensus 383 ~~~~~~ 388 (803)
..+...
T Consensus 84 ~~~s~~ 89 (94)
T d1pd6a_ 84 EKCSTE 89 (94)
T ss_dssp EEECCE
T ss_pred EEEEEE
Confidence 655443
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.5e-11 Score=100.04 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=66.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE----ecC--------CeEEEEEeeeccCcCe-EEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF----IDE--------ETSTIAIYSVVRADTS-TYTVTA 583 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~----~~~--------~~~~L~i~~v~~~dsG-~Y~C~a 583 (803)
...+..|+++.|.|.+.|.|.|.+.|+++|..+......... ... ..+.|.|.+++.+|.| .|+|.|
T Consensus 11 ~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A 90 (107)
T d1iray3 11 TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA 90 (107)
T ss_dssp EEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEE
T ss_pred EEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEE
Confidence 456778999999999999999999999999988765332221 110 1368999999999999 599999
Q ss_pred EcCCCCeEEEEEEE
Q psy2776 584 TNAAGSTSLDLSLQ 597 (803)
Q Consensus 584 ~n~~g~~s~s~~l~ 597 (803)
+|..|..+..+.|.
T Consensus 91 ~N~~G~~~~~i~L~ 104 (107)
T d1iray3 91 KNTHGIDAAYIQLI 104 (107)
T ss_dssp ECSSCEEEEEEEEE
T ss_pred EeCCCeEEEEEEEE
Confidence 99999999988886
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.6e-11 Score=100.11 Aligned_cols=82 Identities=5% Similarity=0.085 Sum_probs=65.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+++.|.|.+.| |+|.+.|+++|..+.......... .+..|.|.++..+|+|.|+|.|.|..|..+.+..
T Consensus 5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~ 81 (92)
T d1olza1 5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM--GRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQV 81 (92)
T ss_dssp EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT--TTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc--eeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence 3577899999999999998 778999999999887653322111 2346999999999999999999999998877666
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
|.+..
T Consensus 82 l~~~~ 86 (92)
T d1olza1 82 VAKHV 86 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65543
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=5.3e-11 Score=99.63 Aligned_cols=87 Identities=18% Similarity=0.368 Sum_probs=67.6
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-------------eEEEecCeeEEEEecCCCCcceE
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-------------NITYENNVARFTVVNCSESSEGR 211 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-------------~~~~~~~~~~L~i~~v~~~d~G~ 211 (803)
|.+...+.+..+.+|+++.|.|.+.|.|.|.+.|++++...... +... ...+|.|.+++.+|+|.
T Consensus 2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tL~I~~v~~~D~G~ 79 (102)
T d1f97a1 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SSSGITFSSVTRKDNGE 79 (102)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ETTEEEESCCCGGGCEE
T ss_pred CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe--cCCEEEEeECCccCCEE
Confidence 44555667788999999999999999999999999865432110 1111 23479999999999999
Q ss_pred EEEEEEcCCcCeeeEEEEEEee
Q psy2776 212 YTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 212 Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
|+|.|.|..|.....+.|.|.+
T Consensus 80 Y~C~a~n~~g~~~~~~~v~v~V 101 (102)
T d1f97a1 80 YTCMVSEEGGQNYGEVSIHLTV 101 (102)
T ss_dssp EEEEEEETTSSSEEEEEEEEEE
T ss_pred EEEEEEECCCCEEEEEEEEEEE
Confidence 9999999999988877776654
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1e-11 Score=103.28 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=66.4
Q ss_pred eeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCC--CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 681 EKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
...+.+|+.+.|.|.+. +.|.+.|.|+|+|..+... .+.++...+. +|.|.++ +.+|+|.|+|.|.|..|....
T Consensus 11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v-~~~D~G~Y~C~a~N~~g~~~~ 87 (101)
T d1iray1 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPA-KVEDSGHYYCVVRNSSYCLRI 87 (101)
T ss_dssp CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTC-CGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCC--EEEeccc-eecCCEEEEEEEECCCCeEEE
Confidence 45677899999999885 6799999999998765432 3333444444 6999999 899999999999999999999
Q ss_pred eEEEEEE
Q psy2776 758 GARVTVD 764 (803)
Q Consensus 758 ~~~l~V~ 764 (803)
++.|.|.
T Consensus 88 ~~~L~V~ 94 (101)
T d1iray1 88 KISAKFV 94 (101)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999984
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.3e-11 Score=102.64 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=68.1
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE---EE--------ecCeeEEEEecCCCCcceEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI---TY--------ENNVARFTVVNCSESSEGRY 212 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~---~~--------~~~~~~L~i~~v~~~d~G~Y 212 (803)
++.+...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+..... .. .....+|.|.+++.+|+|.|
T Consensus 4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 83 (105)
T d1nbqa1 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY 83 (105)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeE
Confidence 34455556677889999999999999999999999997754432110 00 00124799999999999999
Q ss_pred EEEEEcCCcCeeeEEEEEEe
Q psy2776 213 TCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 213 ~C~a~n~~g~~~~s~~l~V~ 232 (803)
+|.|.|..|.....+.|.|.
T Consensus 84 ~C~a~n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 84 TCMVSEEGGNSYGEVKVKLI 103 (105)
T ss_dssp EEEEEETTSSCEECCEEECC
T ss_pred EEEEEECCCCEEEEEEEEEE
Confidence 99999999998877776654
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=8.1e-11 Score=95.26 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred cCeeeecCCcEEEEEEECcc-CCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCee-eEEEE
Q psy2776 152 KDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE-TSCTL 229 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l 229 (803)
....+.+|+.++|.|.+.+. |...+.|||++..+.... ....|.|.+++.+|+|.|+|+|.|..+... ..+.|
T Consensus 8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i 82 (89)
T d1f2qa2 8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNI 82 (89)
T ss_dssp SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEE
Confidence 34567899999999999765 455799999998775432 345799999999999999999999887543 35778
Q ss_pred EEeeee
Q psy2776 230 LVQGKE 235 (803)
Q Consensus 230 ~V~~~~ 235 (803)
.|...|
T Consensus 83 ~V~~~P 88 (89)
T d1f2qa2 83 TVIKAP 88 (89)
T ss_dssp EEECSC
T ss_pred EEEeCC
Confidence 777653
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.10 E-value=9.5e-11 Score=93.73 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+....+.+|++++|+|.+.|.|.+. +.|+++|..+..+ ..+|.|.++ +.+|+|.|+|.|.|
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~-~~~d~G~Y~C~a~~ 73 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAA-TVNDSGEYRCQTNL 73 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSC-CGGGCEEEEEECSS
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCC-cccCCEEEEEEccC
Confidence 56677777788999999999999999999885 6678888876433 226999999 89999999999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
..+++. +.|.|
T Consensus 74 s~~S~~--v~L~V 84 (84)
T d1fnla1 74 STLSDP--VQLEV 84 (84)
T ss_dssp SCCCCC--EEEEE
T ss_pred CCcccc--EEEEC
Confidence 877644 44543
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=9.6e-11 Score=97.28 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=60.9
Q ss_pred ceEEeecceeEEEE------EEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 517 SQRLSVKSQWKVEV------KYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C------~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
.+.+..|....|.| .+.++|.|.+.|+|||..|..+.+..... +..|.|.++..+|+|.|+|.|.|..|..
T Consensus 8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~g~ 84 (103)
T d1iray2 8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---KDRLIVMNVAEKHRGNYTCHASYTYLGK 84 (103)
T ss_dssp EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE---TTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec---CCEEEEcccccccCcEEEEEEEECcCCE
Confidence 47788999999999 67899999999999999998765433332 2469999999999999999999987754
Q ss_pred EEE
Q psy2776 591 SLD 593 (803)
Q Consensus 591 s~s 593 (803)
..+
T Consensus 85 ~~~ 87 (103)
T d1iray2 85 QYP 87 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=7.8e-11 Score=93.76 Aligned_cols=78 Identities=18% Similarity=0.145 Sum_probs=59.8
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
|.|...|....+.+|+.++|.|.+.|.|.+. +.|++++..+.... ..|.|.++ +.+|+|.|.|.|.|.
T Consensus 2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v-~~~d~G~Y~C~a~~s 70 (82)
T d1f2qa1 2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNA-KFEDSGEYKCQHQQV 70 (82)
T ss_dssp CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------SEEEECSC-CGGGCEEEEEECTTS
T ss_pred CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc----------ceeEECCC-ChhhCCcEEEEecCC
Confidence 5566667677899999999999999998884 66788888775432 25999999 899999999999998
Q ss_pred CcceeeeEEEEE
Q psy2776 752 LGSATHGARVTV 763 (803)
Q Consensus 752 ~G~~~~~~~l~V 763 (803)
.+++ .+.|.|
T Consensus 71 ~~S~--~v~l~V 80 (82)
T d1f2qa1 71 NESE--PVYLEV 80 (82)
T ss_dssp SCCC--CEEEEE
T ss_pred CCcc--cEEEEE
Confidence 7765 456665
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.4e-10 Score=96.54 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=73.0
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECc-cCCC--eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTP--DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
.|+.+...+....+.+|+.++|.|.+.| +|.| ++.|++++..+............+|.|..+..+|.|.|+|+|.|.
T Consensus 3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~ 82 (103)
T d1iama1 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD 82 (103)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence 4667777777778899999999999986 6666 578999999887554333345678999999999999999999999
Q ss_pred CcCeeeEEEEEEeee
Q psy2776 220 AGTAETSCTLLVQGK 234 (803)
Q Consensus 220 ~g~~~~s~~l~V~~~ 234 (803)
.|.......+.+..+
T Consensus 83 ~g~~~~~~~~~~s~p 97 (103)
T d1iama1 83 LRPQGLELFENTSAP 97 (103)
T ss_dssp CGGGTSCEEEEECCC
T ss_pred CCCccCeEeeeEcCC
Confidence 987766666666543
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4e-11 Score=100.74 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=62.5
Q ss_pred eccceeEEecCCeEEEEEEEee-cC--CCceEEeeCCeeccCCCCeEEEee--CceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKA-SP--APSIVWFRNNKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g-~p--~~~v~W~~~~~~l~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..+....+.+|+.++|+|.+.| .| .+.+.|+++|.+|..+........ ...+.|.|... ..+|.|.|+|+|.|.
T Consensus 7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~-~~d~g~~ytC~A~n~ 85 (106)
T d1zxqa1 7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD-REDGHRNFSCLAVLD 85 (106)
T ss_dssp EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECC-GGGGGCEEEEEEEEE
T ss_pred ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeee-hhcCCcEEEEEEEec
Confidence 3455567889999999999987 44 457999999999864322211111 23456777776 567888999999999
Q ss_pred CcceeeeEEEEE
Q psy2776 752 LGSATHGARVTV 763 (803)
Q Consensus 752 ~G~~~~~~~l~V 763 (803)
+|.....+.+.+
T Consensus 86 ~~~~~~~~~~~~ 97 (106)
T d1zxqa1 86 LMSRGGNIFHKH 97 (106)
T ss_dssp CGGGTCCEEEEE
T ss_pred CCCCCCeeEecc
Confidence 998877776666
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.9e-11 Score=100.54 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=67.2
Q ss_pred ceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
...+.+|+.+.|.|.+. +.|.+.+.|+|+|..+... .+.++.. .+.+|.|.++..+|+|.|+|.|.|..|....+
T Consensus 11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~ 88 (101)
T d1iray1 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ--HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 88 (101)
T ss_dssp CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE--ETTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec--cCCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence 45678899999999875 6788999999998765432 2233333 23579999999999999999999999999999
Q ss_pred EEEEEeee
Q psy2776 594 LSLQVLGY 601 (803)
Q Consensus 594 ~~l~V~~~ 601 (803)
+.|.|...
T Consensus 89 ~~L~V~~~ 96 (101)
T d1iray1 89 ISAKFVEN 96 (101)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 99999763
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.03 E-value=1.2e-10 Score=98.43 Aligned_cols=79 Identities=19% Similarity=0.122 Sum_probs=60.0
Q ss_pred eeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCC-------CeEEEeeCceEEEEEecCCCCCCce---eEEEEEE
Q psy2776 681 EKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSP-------KKREIFDGENIILELKEADSETDAG---DYKVVAT 749 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~-------~~~~~~~~~~~~L~i~~v~~~~D~G---~Y~C~a~ 749 (803)
+.++.+|++++|.|.+ .|.|.|.+.|++++..+.... ++... ...+|.|.++ +.+|+| .|.|.|+
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v-~~~D~gd~g~Y~C~A~ 86 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG---PDGNLYFTIV-TKEDVSDIYKYVCTAK 86 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC---TTSCEEEEEE-CGGGCCSSEEEEEEEE
T ss_pred cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc---cccccEEeee-EeeccCCceEEEEEEE
Confidence 4567899999999986 899999999999876654322 22221 2235999999 788877 6999999
Q ss_pred ccCcceeeeEEEEE
Q psy2776 750 NELGSATHGARVTV 763 (803)
Q Consensus 750 N~~G~~~~~~~l~V 763 (803)
|.+|.+...+.+.+
T Consensus 87 N~~g~~~~~~~~~~ 100 (111)
T d1biha2 87 NAAVDEEVVLVEYE 100 (111)
T ss_dssp CTTCSSCEEEEEEE
T ss_pred eCCCCceEEEEEEE
Confidence 99999877665444
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.02 E-value=2.3e-10 Score=91.72 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=63.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
.|.+...|....+.+|+.++|.|.+.+.|.+ .+.|++++..+... ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus 4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~-------~~~l~i~~v~~~dsG~Y~C~a~ns~~S 76 (85)
T d2fcba1 4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-------TQPSYRFKANNNDSGEYTCQTGQTSLS 76 (85)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC-------CSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc-------ccceEEeeccccCCcEEEEECCCCccc
Confidence 5677777788889999999999999988876 58899999887543 346899999999999999999886543
Q ss_pred eeeEEEEEE
Q psy2776 223 AETSCTLLV 231 (803)
Q Consensus 223 ~~~s~~l~V 231 (803)
. .+.|.|
T Consensus 77 ~--~v~l~V 83 (85)
T d2fcba1 77 D--PVHLTV 83 (85)
T ss_dssp C--CEEEEE
T ss_pred c--cEEEEE
Confidence 3 345554
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.01 E-value=3.9e-10 Score=90.02 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=59.1
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCe-eEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
.+|.+...|....+.+|++++|+|.+.+.|.+. +.|++++..+.. ...+|.|.+++.+|+|.|+|.|.|..+
T Consensus 4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~~s~~ 76 (84)
T d1fnla1 4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQTNLSTL 76 (84)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-------cceeeEecCCcccCCEEEEEEccCCCc
Confidence 457777778888899999999999999988886 556777765532 345799999999999999999987654
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.1e-10 Score=91.14 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=58.5
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCe-eEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
|.|...|....+.+|+.++|.|.+.+.|.+. +.|++++..+.. ....|.|.+++.+|+|.|+|.|.|..+..
T Consensus 2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~ 74 (82)
T d1f2qa1 2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLNIVNAKFEDSGEYKCQHQQVNESE 74 (82)
T ss_dssp CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-------CSSEEEECSCCGGGCEEEEEECTTSSCCC
T ss_pred CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec-------ccceeEECCCChhhCCcEEEEecCCCCcc
Confidence 5667777778899999999999999988885 567888776643 23569999999999999999998865533
Q ss_pred eeEEEEEE
Q psy2776 224 ETSCTLLV 231 (803)
Q Consensus 224 ~~s~~l~V 231 (803)
.+.|.|
T Consensus 75 --~v~l~V 80 (82)
T d1f2qa1 75 --PVYLEV 80 (82)
T ss_dssp --CEEEEE
T ss_pred --cEEEEE
Confidence 345555
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.1e-10 Score=95.19 Aligned_cols=85 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred ceEEeecceeEEEEEEcC-cC--CCeeEEeeCCeeecCCCcEEEEecC--CeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FP--RPEISWMKNGAEITDSKACRIFIDE--ETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p--~~~v~W~~~g~~i~~~~~~~~~~~~--~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
...+.+|+.++|+|.+.| +| .+.++|+|+|+.|............ ..+.|.|.....+|.|.|+|+|.|..|...
T Consensus 11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~ 90 (106)
T d1zxqa1 11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRG 90 (106)
T ss_dssp SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGT
T ss_pred CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCC
Confidence 456889999999999986 44 4589999999988654222211111 235677777778888899999999988776
Q ss_pred EEEEEEEeee
Q psy2776 592 LDLSLQVLGY 601 (803)
Q Consensus 592 ~s~~l~V~~~ 601 (803)
..+.+.+..+
T Consensus 91 ~~~~~~~s~p 100 (106)
T d1zxqa1 91 GNIFHKHSAP 100 (106)
T ss_dssp CCEEEEECCC
T ss_pred CeeEecccCC
Confidence 6666666543
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.85 E-value=3.4e-10 Score=95.66 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=60.9
Q ss_pred eEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcE-----EEEecCCeEEEEEeeeccCcCe---EEEEEEEcCCC
Q psy2776 518 QRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDSKAC-----RIFIDEETSTIAIYSVVRADTS---TYTVTATNAAG 588 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~-----~~~~~~~~~~L~i~~v~~~dsG---~Y~C~a~n~~g 588 (803)
..+.+|+++.|.|.+ .|.|.|.+.|+|++..+....+. ++.. ....+|.|.+++.+|+| .|+|.|+|..|
T Consensus 12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g 90 (111)
T d1biha2 12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA-GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV 90 (111)
T ss_dssp ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE-CTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecc-ccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence 346789999999996 89999999999988765433211 1111 23457999999999877 79999999999
Q ss_pred CeEEEEEEEE
Q psy2776 589 STSLDLSLQV 598 (803)
Q Consensus 589 ~~s~s~~l~V 598 (803)
.....+.+.+
T Consensus 91 ~~~~~~~~~~ 100 (111)
T d1biha2 91 DEEVVLVEYE 100 (111)
T ss_dssp SSCEEEEEEE
T ss_pred CceEEEEEEE
Confidence 9877665444
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.4e-09 Score=87.41 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=58.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC----------CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS----------KACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~----------~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
.....+|++|+|.|.+. .|.+.+.|++++..+..- -+.++.....+.+|.|.++..+|+|.|+|.|.|.
T Consensus 4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~ 82 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (93)
T ss_dssp EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence 46778999999999864 588899999998776421 1112222334578999999999999999999998
Q ss_pred CCCeEEEEEEEE
Q psy2776 587 AGSTSLDLSLQV 598 (803)
Q Consensus 587 ~g~~s~s~~l~V 598 (803)
.+... +.|.|
T Consensus 83 ~~t~~--~~l~V 92 (93)
T d1ccza1 83 TDTMK--FFLYV 92 (93)
T ss_dssp CSCEE--EEEEE
T ss_pred CcEEE--EEEEE
Confidence 76554 44444
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2.1e-09 Score=87.84 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=58.7
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC----------CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS----------PKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~----------~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+.+..|++|+|.|... .|.+.+.|++++..+... .+.....+.....|.|.++ +.+|+|.|+|.|.|
T Consensus 4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l-~~~DsG~Y~c~~~n 81 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL-TSSDEDEYEMESPN 81 (93)
T ss_dssp EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSC-CGGGCEEEEEECTT
T ss_pred EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEec-ChhhCEEEEEEEEC
Confidence 46788899999999864 688999999998776311 1111222334567999999 89999999999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
..|... +.|+|
T Consensus 82 ~~~t~~--~~l~V 92 (93)
T d1ccza1 82 ITDTMK--FFLYV 92 (93)
T ss_dssp CCSCEE--EEEEE
T ss_pred CCcEEE--EEEEE
Confidence 887654 44444
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=8.1e-08 Score=83.14 Aligned_cols=83 Identities=10% Similarity=0.173 Sum_probs=60.1
Q ss_pred eeEEecCCeEEEEEEEeecCC---CceEEeeCCeec-------------c----CCCCeEEEee---CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPL-------------L----SSPKKREIFD---GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~~~~l-------------~----~~~~~~~~~~---~~~~~L~i~~v~~ 737 (803)
.+.+..|++++|.|.+.+.+. ..+.|++.+... . ...+.....+ ...++|.|.++ +
T Consensus 11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v-~ 89 (126)
T d1pkoa_ 11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV-R 89 (126)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC-C
T ss_pred CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE-c
Confidence 467889999999999864332 358999864310 0 1112222222 33689999999 8
Q ss_pred CCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 738 ETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.+|+|.|+|.+.|..|..+..+.|+|.
T Consensus 90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~ 116 (126)
T d1pkoa_ 90 FSDEGGYTCFFRDHSYQEEAAVELKVE 116 (126)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence 999999999999999999988888885
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=8.8e-08 Score=82.91 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=63.2
Q ss_pred eeccCcCeeeecCCcEEEEEEECcc---CCCeeEEEEcCeecc------------------ceeEEE-----ecCeeEEE
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIK------------------GRNITY-----ENNVARFT 200 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~---p~p~i~W~~~~~~~~------------------~~~~~~-----~~~~~~L~ 200 (803)
+..+...+.+..|++++|.|.+.+. ....+.|++.+.... ..+..+ ..+..+|.
T Consensus 5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~ 84 (126)
T d1pkoa_ 5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALR 84 (126)
T ss_dssp EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEE
T ss_pred EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEE
Confidence 3344455788899999999998532 223589998653210 011222 12357899
Q ss_pred EecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeee
Q psy2776 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~ 235 (803)
|.+++.+|+|.|+|.+.+..+..+..+.|.|.++.
T Consensus 85 I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~ 119 (126)
T d1pkoa_ 85 IQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119 (126)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred EEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence 99999999999999999998888888889887754
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=5.5e-08 Score=79.84 Aligned_cols=87 Identities=26% Similarity=0.479 Sum_probs=73.3
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEEEEE
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRVAAV 119 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~a~ 119 (803)
||++|..+.+......+++|+|.+|...++.++.+|.++++..+.. .|..... ....++|.+|.+...|.|+++|.
T Consensus 1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~ 79 (98)
T d1x5ya1 1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSE-EWVPANKEPVERCGFTVKDLPTGARILFRVVGV 79 (98)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCC-CCEESSSSCBSSSEEEEECCCTTCCEEEEEEEE
T ss_pred CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcc-eeEEeeeecCceeEEEECCCcCCeEEEEEEEEE
Confidence 5777777777778899999999999988888999999999887765 6876543 35789999999999999999999
Q ss_pred ccCccCCCcce
Q psy2776 120 NAIGTGPASHN 130 (803)
Q Consensus 120 ~~~g~~~~s~~ 130 (803)
|..|.+..+..
T Consensus 80 n~~G~s~~s~~ 90 (98)
T d1x5ya1 80 NIAGRSEPATL 90 (98)
T ss_dssp ETTEECCCCCC
T ss_pred CCCcCCCCcCC
Confidence 99998765543
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=6.1e-08 Score=79.35 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=55.8
Q ss_pred eeEEecCCeEEEEEEE-eec-CCCceEEeeCCeecc----------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 681 EKTVKEKGTIRLMAKV-KAS-PAPSIVWFRNNKPLL----------SSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~-~g~-p~~~v~W~~~~~~l~----------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
.+....|++|+|.|.. ... ....|.|+|++..+. .+.+..+.. +..|.|.++ +.+|+|.|+|.+
T Consensus 4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~---ngSL~I~nl-~~~DsG~Y~c~v 79 (98)
T d1hnga1 4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA---NGDLKIKNL-TRDDSGTYNVTV 79 (98)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT---TSCEEESSC-CGGGCEEEEEEE
T ss_pred EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECC---CccEEEeCC-CHHHCEEEEEEE
Confidence 4567789999999953 222 224799999987763 122222222 235999999 899999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|..|.......+.++
T Consensus 80 ~~~~g~~~~~~~~~L~ 95 (98)
T d1hnga1 80 YSTNGTRILNKALDLR 95 (98)
T ss_dssp EETTCCEEEEEEEEEE
T ss_pred EeCCCCEEEEEEEEEE
Confidence 9999998544444433
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.44 E-value=1.3e-07 Score=77.39 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=55.7
Q ss_pred eeeecCCcEEEEEEEC-c-cCCCeeEEEEcCeeccce----------eEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 154 SVAGFQSSVTLECVVS-G-VPTPDIKWYKDDSLIKGR----------NITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~-g-~p~p~i~W~~~~~~~~~~----------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
+....|++++|.|... . .+..+|.|++++..+... +........+|+|.+++.+|+|.|+|.+.+..|
T Consensus 5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g 84 (98)
T d1hnga1 5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 84 (98)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence 3456799999999632 2 233479999988765310 111122345799999999999999999999999
Q ss_pred Cee--eEEEEEEe
Q psy2776 222 TAE--TSCTLLVQ 232 (803)
Q Consensus 222 ~~~--~s~~l~V~ 232 (803)
... .++.|.|.
T Consensus 85 ~~~~~~~~~L~V~ 97 (98)
T d1hnga1 85 TRILNKALDLRIL 97 (98)
T ss_dssp CEEEEEEEEEEEE
T ss_pred CEEEEEEEEEEEE
Confidence 864 45666664
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.6e-06 Score=70.48 Aligned_cols=90 Identities=28% Similarity=0.494 Sum_probs=71.5
Q ss_pred CCCCCCCceEEE-ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee-eeeEEEEeccccCCeEEEEEEEEc
Q psy2776 43 APGAPDTPEIVG-RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVN 120 (803)
Q Consensus 43 ~p~~p~~~~~~~-~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~~ 120 (803)
||+|+..+.+.. ....+++|+|.+|...++.++..|.++.+..+.. .|..... ....+.|.+|.+...|.|+++|.|
T Consensus 1 PP~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N 79 (97)
T d2crza1 1 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD-EPREVYQGSEVECTVSSLLPGKTYSFRLRAAN 79 (97)
T ss_dssp CCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSC-CCEEEEEESCSEEEEESCCTTCEEEECCEEEC
T ss_pred CcCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCC-ceeEeecCCceEEEEcCCCCCEEEEEEEEEec
Confidence 466666666543 3467999999999888888999999999877665 5655433 467899999999999999999999
Q ss_pred cCccCCCcceeeE
Q psy2776 121 AIGTGPASHNTRY 133 (803)
Q Consensus 121 ~~g~~~~s~~~~~ 133 (803)
..|.+..+.....
T Consensus 80 ~~G~s~~S~~~~~ 92 (97)
T d2crza1 80 KMGFGPFSEKCDI 92 (97)
T ss_dssp SSCBCCCCCCEEE
T ss_pred CCeEcCCcCCCeE
Confidence 9999887765543
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=7.5e-07 Score=76.50 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=60.3
Q ss_pred ceeEEecCCeEEEEEEEeecCCC----ceEEeeCCeecc---------------------CCCCeEEEee---CceEEEE
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP----SIVWFRNNKPLL---------------------SSPKKREIFD---GENIILE 731 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~----~v~W~~~~~~l~---------------------~~~~~~~~~~---~~~~~L~ 731 (803)
..+.+.+|+++.|.|...+.+.. .+.|++...... ...|.....+ ...+.|.
T Consensus 12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 91 (124)
T d1eaja_ 12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN 91 (124)
T ss_dssp EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence 34678899999999998765443 488987311100 1122222221 2346799
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|.++ +.+|+|.|.|.+.|..|.....+.|+|.|
T Consensus 92 I~~v-~~~D~G~Y~C~v~~~~~~~~~~~~L~V~V 124 (124)
T d1eaja_ 92 VTNL-QLSDIGTYQCKVKKAPGVANKKIHLVVLV 124 (124)
T ss_dssp ECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred Eccc-EEccCEEEEEEEEECCCeEEeEEEEEEEC
Confidence 9999 79999999999999999999888888853
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=2.2e-06 Score=71.30 Aligned_cols=91 Identities=32% Similarity=0.540 Sum_probs=73.0
Q ss_pred ecCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee----eeeEEEEeccccCCeEEEEE
Q psy2776 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET----TSTTYEVTKLTTKHEYMFRV 116 (803)
Q Consensus 41 ~~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~c 116 (803)
+.+|.+|..+.+......++.|+|.++ ..++.+|.+|.++++.......|..... ....+.|.+|.+...|.|++
T Consensus 8 ~~pP~~P~~~~v~~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV 86 (108)
T d1x4za1 8 LSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRV 86 (108)
T ss_dssp CCCCCCCCCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEE
T ss_pred cCCCccCCCCEEEEccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEE
Confidence 357888888888888899999999765 4567889999999887665545544433 35689999999999999999
Q ss_pred EEEccCccCCCcceee
Q psy2776 117 AAVNAIGTGPASHNTR 132 (803)
Q Consensus 117 ~a~~~~g~~~~s~~~~ 132 (803)
.|.|..|.+..+..+.
T Consensus 87 ~A~N~~G~s~~S~pS~ 102 (108)
T d1x4za1 87 RALNMLGESEPSAPSR 102 (108)
T ss_dssp EEEETTEECCCCCCCC
T ss_pred EEECCCcCCCCCCCCC
Confidence 9999999887766543
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=6.3e-07 Score=74.28 Aligned_cols=92 Identities=30% Similarity=0.493 Sum_probs=73.6
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEEEE
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRVAA 118 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~a 118 (803)
.||.||..+.+......+++|+|.+|...++.++..|.++.+..... .|..... ....+.+.+|.+...|.|+++|
T Consensus 1 ~Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A 79 (104)
T d1bpva_ 1 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG-RWLKANFSNILENEFTVSGLTEDAAYEFRVIA 79 (104)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSC-CCEECCCSCCCSSEEEECSCCSSCCEEEEEEE
T ss_pred CCCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeeccccc-ceeEEEeeccceeEEEEcCCCCCCEEEEEEEE
Confidence 37888988998888899999999999888888999999988876665 4444332 3678999999999999999999
Q ss_pred EccCcc-CCCcceeeEE
Q psy2776 119 VNAIGT-GPASHNTRYV 134 (803)
Q Consensus 119 ~~~~g~-~~~s~~~~~~ 134 (803)
.|..|. +..+.....+
T Consensus 80 ~n~~G~~s~~S~~s~~v 96 (104)
T d1bpva_ 80 KNAAGAISPPSEPSDAI 96 (104)
T ss_dssp ECTTSCEEEEEEEEEEE
T ss_pred EECCCCCCCCcCCCCCE
Confidence 999986 4444444333
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.30 E-value=2e-06 Score=70.94 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=56.9
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC---Ceec-----------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN---NKPL-----------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~---~~~l-----------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.........+.||+. ..+. ....++....++..+.|.|.++ +.+|+|
T Consensus 5 QsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~-~~~DsA 83 (106)
T d1a0ql1 5 QSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNL-EPEDIA 83 (106)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSC-CGGGCS
T ss_pred CcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhh-cccCCE
Confidence 445667899999999999987766667999983 2211 1234666666778899999999 899999
Q ss_pred eEEEEEEcc
Q psy2776 743 DYKVVATNE 751 (803)
Q Consensus 743 ~Y~C~a~N~ 751 (803)
.|.|.+.+.
T Consensus 84 ~YyCa~~~~ 92 (106)
T d1a0ql1 84 TYYCLQYYN 92 (106)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEeCC
Confidence 999987653
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=4.1e-07 Score=75.55 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=53.2
Q ss_pred eeecCCcEEEEEEECccCCCeeEEEEcCeeccc--------------------eeEEEecCeeEEEEecCCCCcceEEEE
Q psy2776 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--------------------RNITYENNVARFTVVNCSESSEGRYTC 214 (803)
Q Consensus 155 ~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C 214 (803)
.+.+|+++.|.|.........+.|+|....... ++..+.. ..+|.|.+++.+|+|.|+|
T Consensus 10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~-ngSL~I~~v~~~D~G~Y~c 88 (107)
T d1l6za1 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-NGSLLFQMITMKDMGVYTL 88 (107)
T ss_dssp SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECT-TSCEEECSCCGGGCEEEEE
T ss_pred cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcc-cccEEEcCCCchhCEEEEE
Confidence 356999999999854434557999996542211 1223322 3579999999999999999
Q ss_pred EEEcCCcC-eeeEEEEEE
Q psy2776 215 KATNEAGT-AETSCTLLV 231 (803)
Q Consensus 215 ~a~n~~g~-~~~s~~l~V 231 (803)
.+.+..+. .+.++.|.|
T Consensus 89 ~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 89 DMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEETTEEECCCCEEECC
T ss_pred EEEECCCCEEEEEEEEEE
Confidence 99987653 445566654
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=6.5e-07 Score=76.91 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=59.1
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCC----CeeEEEEcCeecc----------------------ceeEEEe-----cC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPT----PDIKWYKDDSLIK----------------------GRNITYE-----NN 195 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~----p~i~W~~~~~~~~----------------------~~~~~~~-----~~ 195 (803)
++.+...+.+.+|++++|.|.+.+.+. ..+.|++...... ..+.... .+
T Consensus 7 Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 86 (124)
T d1eaja_ 7 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG 86 (124)
T ss_dssp ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT
T ss_pred EEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCC
Confidence 333334567889999999999864333 2488987321100 0112221 12
Q ss_pred eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 196 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
...|+|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 4579999999999999999999988877777777775
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.9e-06 Score=73.02 Aligned_cols=95 Identities=28% Similarity=0.567 Sum_probs=77.5
Q ss_pred EEEEecCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee--eeeEEEEeccccCCeEEE
Q psy2776 37 KVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMF 114 (803)
Q Consensus 37 ~l~V~~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y 114 (803)
.+.+.+.|.+|..+.+......+++|+|.+|. .++.++..|.++++.....-.|..+.. ....++|.+|.+...|.|
T Consensus 9 ~~~~~~~P~pP~~~~v~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f 87 (117)
T d1uema_ 9 NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLF 87 (117)
T ss_dssp CCCSCCSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEE
T ss_pred cceeCccCcCCCCCEEEEccCCEEEEEEECCC-cCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEE
Confidence 34566889999989888888999999999764 456789999998887776667876654 367899999999999999
Q ss_pred EEEEEccCccCCCcceee
Q psy2776 115 RVAAVNAIGTGPASHNTR 132 (803)
Q Consensus 115 ~c~a~~~~g~~~~s~~~~ 132 (803)
+++|.|..|.+..+..+.
T Consensus 88 rV~A~N~~G~s~~S~~s~ 105 (117)
T d1uema_ 88 MVRAINPQGLSDPSPMSD 105 (117)
T ss_dssp EEEEEETTEEEEECCCCC
T ss_pred EEEEEeCCcCCCCcCCCc
Confidence 999999999877665543
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.20 E-value=4.5e-06 Score=68.70 Aligned_cols=74 Identities=9% Similarity=0.171 Sum_probs=55.7
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceec------------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPL------------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.........+.||+. |..+ ....++.....+..+.|.|.++ +.+|+|
T Consensus 6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~Dsa 84 (107)
T d1c5cl1 6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSL-ESEDFA 84 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC-CGGGCS
T ss_pred ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhh-cccCCe
Confidence 445567889999999999988777777999983 2211 1233455555667889999999 899999
Q ss_pred eEEEEEEcc
Q psy2776 743 DYKVVATNE 751 (803)
Q Consensus 743 ~Y~C~a~N~ 751 (803)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1c5cl1 85 DYYCLQYAS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEecCcC
Confidence 999987653
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.7e-06 Score=72.16 Aligned_cols=96 Identities=28% Similarity=0.487 Sum_probs=72.3
Q ss_pred EEEEEecCCCCCCCceEEE--ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEee--eeeeEEEEeccccCCe
Q psy2776 36 TKVTLLSAPGAPDTPEIVG--RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE--TTSTTYEVTKLTTKHE 111 (803)
Q Consensus 36 ~~l~V~~~p~~p~~~~~~~--~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~ 111 (803)
+.|.|...|.+|..+.+.. ....++.|+|.+|.. ++.++.+|.++++..+....+.... .....+.|.+|.+...
T Consensus 3 ~~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~-~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 81 (108)
T d1wf5a1 3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS 81 (108)
T ss_dssp CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCC-CSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCE
T ss_pred cccEEecCCCCCCCCEEEEEeccCCEEEEEEECCCC-CCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCE
Confidence 4567788999998876543 457799999999854 6678999999998766541221111 2356799999999999
Q ss_pred EEEEEEEEccCccCCCcceee
Q psy2776 112 YMFRVAAVNAIGTGPASHNTR 132 (803)
Q Consensus 112 g~y~c~a~~~~g~~~~s~~~~ 132 (803)
|.|+++|.|..|.+..+....
T Consensus 82 Y~frV~A~N~~G~s~~S~~~~ 102 (108)
T d1wf5a1 82 YQFRLCAVNDVGKGQFSKDTE 102 (108)
T ss_dssp EEEEEEEEESSCEEEECCCCS
T ss_pred EEEEEEEEcCCcCCCCcCCcC
Confidence 999999999999877665543
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.19 E-value=3e-06 Score=69.87 Aligned_cols=74 Identities=11% Similarity=0.258 Sum_probs=56.4
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceec------------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPL------------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.........+.||+. |..+ ....++.....+..+.|.|.++ +.+|+|
T Consensus 6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~-~~~Dsa 84 (106)
T d1i8ka_ 6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENT-LSEDVG 84 (106)
T ss_dssp EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC-CGGGCE
T ss_pred eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCC-ccccCE
Confidence 445667889999999999987666667999973 2211 1344566666677899999999 799999
Q ss_pred eEEEEEEcc
Q psy2776 743 DYKVVATNE 751 (803)
Q Consensus 743 ~Y~C~a~N~ 751 (803)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (106)
T d1i8ka_ 85 DYYCLQSFN 93 (106)
T ss_dssp EEEEEECSS
T ss_pred EEeEecCcc
Confidence 999987653
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.19 E-value=5.2e-06 Score=68.62 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=57.2
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eec------------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL------------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.........+.||+.. ..+ ....++....++..+.|.|.++ +.+|+|
T Consensus 6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~-~~~Dsa 84 (107)
T d1j1pl_ 6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSV-ETEDFG 84 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC-CGGGCE
T ss_pred CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEccc-CcCCCE
Confidence 4556788999999999999876666679999842 111 1235677777788899999999 799999
Q ss_pred eEEEEEEcc
Q psy2776 743 DYKVVATNE 751 (803)
Q Consensus 743 ~Y~C~a~N~ 751 (803)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1j1pl_ 85 MYFCQQANS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEEcCCC
Confidence 999977654
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.18 E-value=6.5e-06 Score=68.07 Aligned_cols=73 Identities=11% Similarity=0.184 Sum_probs=56.4
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Cee---c---------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP---L---------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.........+.||+. +.. | ....++....+.....|.|.++ +.+|+|
T Consensus 6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~DSa 84 (107)
T d1kcvl1 6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSV-QADDDA 84 (107)
T ss_dssp ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGCE
T ss_pred CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhh-eecCCc
Confidence 445667899999999999988776677999983 111 1 1345666666778899999999 899999
Q ss_pred eEEEEEEc
Q psy2776 743 DYKVVATN 750 (803)
Q Consensus 743 ~Y~C~a~N 750 (803)
.|.|.+..
T Consensus 85 ~YyCa~~~ 92 (107)
T d1kcvl1 85 DYYCGQSY 92 (107)
T ss_dssp EEEEEECS
T ss_pred eEEEEecC
Confidence 99998764
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.18 E-value=7.9e-07 Score=73.76 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=52.9
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCeecc-------------------CCCCeEEEeeCceEEEEEecCCCCCCcee
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL-------------------SSPKKREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~-------------------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
.+.+|++|.|.|.........+.|+|+..... ...|..+..+ ..|.|.++ +.+|+|.
T Consensus 10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n---gSL~I~~v-~~~D~G~ 85 (107)
T d1l6za1 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN---GSLLFQMI-TMKDMGV 85 (107)
T ss_dssp SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT---SCEEECSC-CGGGCEE
T ss_pred cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc---ccEEEcCC-CchhCEE
Confidence 35689999999974333345799998653211 1123333322 35999999 8999999
Q ss_pred EEEEEEccC-cceeeeEEEEE
Q psy2776 744 YKVVATNEL-GSATHGARVTV 763 (803)
Q Consensus 744 Y~C~a~N~~-G~~~~~~~l~V 763 (803)
|+|.+.|.. +.....+.|+|
T Consensus 86 Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 86 YTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEEEEETTEEECCCCEEECC
T ss_pred EEEEEEECCCCEEEEEEEEEE
Confidence 999999876 44566676665
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=5.3e-06 Score=67.98 Aligned_cols=90 Identities=23% Similarity=0.406 Sum_probs=69.5
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee------eeeEEEEeccccCCeEEEE
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET------TSTTYEVTKLTTKHEYMFR 115 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~ 115 (803)
+.|++|.... ......++.|+|.+|...|+.+|..|.++++..+.. .|..... ....+.|.+|.+...|.|+
T Consensus 1 DvP~~P~~~~-~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~fr 78 (101)
T d2haza1 1 DTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE-VWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 78 (101)
T ss_dssp CCCCCCEEEE-EEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCC-CCEEEEEEHHHHHHHSEEEECSCCTTCEEEEE
T ss_pred CcCcCCccCE-EEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCc-ceeeeeeeeecccceeEEEecCCCCCeEEEEE
Confidence 3466664333 344578899999999988889999999999876654 4443322 1567999999999999999
Q ss_pred EEEEccCccCCCcceeeE
Q psy2776 116 VAAVNAIGTGPASHNTRY 133 (803)
Q Consensus 116 c~a~~~~g~~~~s~~~~~ 133 (803)
++|.|.+|.+..+.....
T Consensus 79 V~A~N~~G~g~~S~~~~~ 96 (101)
T d2haza1 79 LAALNGKGLGEISAASEF 96 (101)
T ss_dssp EEEEETTEECCCCCCEEE
T ss_pred EEEEeCCcCcCCCCceeE
Confidence 999999999888876543
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.18 E-value=3.9e-06 Score=69.31 Aligned_cols=74 Identities=9% Similarity=0.158 Sum_probs=56.1
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceec------------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPL------------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|...+.....+.||+. |..+ ....++.....+..+.|.|.++ +.+|+|
T Consensus 6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~-~~~Dsa 84 (107)
T d1ospl1 6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSL-QTEDVA 84 (107)
T ss_dssp CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSC-CGGGCS
T ss_pred eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccc-ccccCC
Confidence 345567889999999999987766667999983 1111 1334666666677889999999 799999
Q ss_pred eEEEEEEcc
Q psy2776 743 DYKVVATNE 751 (803)
Q Consensus 743 ~Y~C~a~N~ 751 (803)
.|.|.+...
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1ospl1 85 TYFCQQYWS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred cEEEeeccC
Confidence 999987643
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=2.6e-06 Score=69.53 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc----eeEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG----RNITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
..|.+...+.. .|..|++|+|+|... .+...+.|+|++..... ...........+.|.+|+.+|+|.|+|...+
T Consensus 6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~ 83 (99)
T d1ucta1 6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 83 (99)
T ss_dssp CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence 45777777664 577999999999875 45567999997642211 1111223446799999999999999999988
Q ss_pred CCcCeeeE
Q psy2776 219 EAGTAETS 226 (803)
Q Consensus 219 ~~g~~~~s 226 (803)
.......+
T Consensus 84 ~~~~S~~S 91 (99)
T d1ucta1 84 GHYRFRYS 91 (99)
T ss_dssp TTTEEEEC
T ss_pred CCcccCCC
Confidence 76644444
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.16 E-value=8.8e-06 Score=67.06 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=55.6
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCC---ee--c---------cCCCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN---KP--L---------LSSPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~---~~--l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
...|..+.+.+|++++|.|...+.....+.||+.. .+ | ....++....++..+.|.|.++ +.+|+
T Consensus 5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l-~~~Ds 83 (108)
T d1jhll_ 5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSL-EPEDF 83 (108)
T ss_dssp EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSC-CTTCC
T ss_pred EccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeee-Eeccc
Confidence 34456678899999999999987666779999831 11 0 0223445555677889999999 89999
Q ss_pred eeEEEEEEcc
Q psy2776 742 GDYKVVATNE 751 (803)
Q Consensus 742 G~Y~C~a~N~ 751 (803)
|.|.|.+.+.
T Consensus 84 a~YyCA~~~~ 93 (108)
T d1jhll_ 84 AMYICQQHNE 93 (108)
T ss_dssp SEEEEEECSS
T ss_pred eEEEEeeCCC
Confidence 9999977664
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.15 E-value=4.6e-06 Score=69.23 Aligned_cols=89 Identities=26% Similarity=0.419 Sum_probs=65.7
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee--------------eeeEEEEeccccCCe
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--------------TSTTYEVTKLTTKHE 111 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~ 111 (803)
||..|.+......+++|+|.+|.. ++.+|.+|.++.+.....-.|..... ....++|.+|++...
T Consensus 2 PP~~p~v~~~~~~sv~l~W~~P~~-~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 80 (107)
T d2ic2a1 2 PPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT 80 (107)
T ss_dssp CCCCCEEEECC---EEEEEEEECC-SSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred cCcCCEEEEEECCEEEEEEEeCcc-ccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence 455667788889999999999965 56889999999887665546655443 256799999999999
Q ss_pred EEEEEEEEccCccCCCcceeeEEE
Q psy2776 112 YMFRVAAVNAIGTGPASHNTRYVV 135 (803)
Q Consensus 112 g~y~c~a~~~~g~~~~s~~~~~~~ 135 (803)
|.|++.|.|..|.+..+..+..+.
T Consensus 81 Y~frV~A~N~~G~s~~S~~s~~~~ 104 (107)
T d2ic2a1 81 YRFRILAVYSNNDNKESNTSAKFY 104 (107)
T ss_dssp EEEEEEEEETTSCEEECCCCCCEE
T ss_pred EEEEEEEEcCCCCCCCCCCCCCEE
Confidence 999999999999987766554433
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.14 E-value=1e-05 Score=66.64 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=56.2
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCC--e---ec---------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~---~l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++++|.|...+.-...+.||+.. + .| ....++....++..+.|.|.++ +.+|+|
T Consensus 5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~-~~~Dsa 83 (106)
T d1op3k1 5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGL-QFDDFA 83 (106)
T ss_dssp EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESC-CGGGCS
T ss_pred CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccc-cccCCC
Confidence 4566788999999999999876666679999842 1 11 1234666666778889999999 899999
Q ss_pred eEEEEEEc
Q psy2776 743 DYKVVATN 750 (803)
Q Consensus 743 ~Y~C~a~N 750 (803)
.|.|.+..
T Consensus 84 ~YyCa~~~ 91 (106)
T d1op3k1 84 TYHCQHYA 91 (106)
T ss_dssp EEEEEEEC
T ss_pred cEeeeeCC
Confidence 99998764
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.14 E-value=8.1e-06 Score=67.34 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=56.2
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--ee---c---------cCCCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---L---------LSSPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~---l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
...|..+.+.+|++|+|.|.........+.||+.. .. | ....++....++..+.|.|.++ +.+|+
T Consensus 5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~Ds 83 (107)
T d1tjgl1 5 TQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTL-RPEDF 83 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC-CGGGC
T ss_pred EeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccc-eeCcC
Confidence 34566778999999999999976666789999832 11 1 1234566666677899999999 89999
Q ss_pred eeEEEEEEcc
Q psy2776 742 GDYKVVATNE 751 (803)
Q Consensus 742 G~Y~C~a~N~ 751 (803)
|.|.|.+.+.
T Consensus 84 A~YyCa~~~~ 93 (107)
T d1tjgl1 84 ATYYCQQLHF 93 (107)
T ss_dssp SEEEEEECSB
T ss_pred ceEEEEECcC
Confidence 9999976643
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=9.1e-06 Score=65.35 Aligned_cols=87 Identities=26% Similarity=0.447 Sum_probs=72.5
Q ss_pred CCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
|++|..+.+......++.|+|.+|...+ .++..|.++.+..... .|.........++|.+|.+...|.|+++|.|..|
T Consensus 1 P~~P~~~~v~~~s~~si~l~W~~p~~~~-~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G 78 (93)
T d1x4xa1 1 PDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVEGS-MQICYCGPGLSYEIKGLSPATTYYCRVQALSVVG 78 (93)
T ss_dssp CCCCCCCCCEEEETTEEEEECCCCSCSS-SCCCEEEEEEESSTTS-CCEEEEESCSEEEEESCCSSCEEEEEEEEECSSC
T ss_pred CcCCCCCEEEEeCCCeEEEEEEecccCC-CeeEEEEEEEccCCCc-ceEeecCCccEEEEcccceeeEEEEEEEEEECCc
Confidence 5677777778888999999999987654 6788999998876665 6666677788899999999999999999999999
Q ss_pred cCCCcceee
Q psy2776 124 TGPASHNTR 132 (803)
Q Consensus 124 ~~~~s~~~~ 132 (803)
.+..+....
T Consensus 79 ~s~~S~~~~ 87 (93)
T d1x4xa1 79 AGPFSEVVA 87 (93)
T ss_dssp CCCBCCCEE
T ss_pred CcCCCCcEE
Confidence 887775543
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.2e-06 Score=66.04 Aligned_cols=88 Identities=23% Similarity=0.381 Sum_probs=70.8
Q ss_pred CCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEE--eeeeeeEEEEeccccCCeEEEEEEEEcc
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK--IETTSTTYEVTKLTTKHEYMFRVAAVNA 121 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a~~~ 121 (803)
|.+|..+.+......++.|+|.+|...++..+..|.++.+..... .|.. .......++|.+|.+...|.|+++|.|.
T Consensus 1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~ 79 (96)
T d1x5xa1 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG-YGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNS 79 (96)
T ss_dssp CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSS-CCCEEEEEESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccce-eeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcC
Confidence 567778888888899999999999888888899999888765554 3333 2334678999999999999999999999
Q ss_pred CccCCCcceee
Q psy2776 122 IGTGPASHNTR 132 (803)
Q Consensus 122 ~g~~~~s~~~~ 132 (803)
.|.+..+....
T Consensus 80 ~G~s~~S~~~~ 90 (96)
T d1x5xa1 80 EGKSNPSEVVE 90 (96)
T ss_dssp SCEEEECCCEE
T ss_pred CcEeCCCCCEE
Confidence 99877665544
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.8e-06 Score=70.54 Aligned_cols=89 Identities=8% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+. ..|..|++|+|.|.+. .+...+.|+|+|........ ......+....+.|.++ +..|+|.|.|...|
T Consensus 7 kPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~v-t~~~~G~Y~C~y~~ 83 (99)
T d1ucta1 7 MPFISAKSS-PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHM-DANKAGRYQCQYRI 83 (99)
T ss_dssp CCCEEESSC-SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCEEEecCC-CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCC-CHHHCceEEEEEEC
Confidence 565655554 4688999999999875 56678999997642111100 00111234567999999 79999999999999
Q ss_pred cCcce--eeeEEEEE
Q psy2776 751 ELGSA--THGARVTV 763 (803)
Q Consensus 751 ~~G~~--~~~~~l~V 763 (803)
..+.. +..++|.|
T Consensus 84 ~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 84 GHYRFRYSDTLELVV 98 (99)
T ss_dssp TTTEEEECCCEEEEE
T ss_pred CCcccCCCCCEEEEe
Confidence 87754 44444444
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.10 E-value=5.4e-06 Score=69.54 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=54.5
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eec------------cCCCCeEEEe--eCceEEEEEecCCCCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL------------LSSPKKREIF--DGENIILELKEADSET 739 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l------------~~~~~~~~~~--~~~~~~L~i~~v~~~~ 739 (803)
...|..+.+.+|+.|+|.|.....+...+.||+.. ... ....++.... ....++|.|.++ +.+
T Consensus 4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~-~~~ 82 (114)
T d2cdea1 4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITAS-QLS 82 (114)
T ss_dssp EEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSC-CGG
T ss_pred EeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEccc-Chh
Confidence 34566778999999999999987777789999832 110 0112233222 245788999999 899
Q ss_pred CceeEEEEEEcc
Q psy2776 740 DAGDYKVVATNE 751 (803)
Q Consensus 740 D~G~Y~C~a~N~ 751 (803)
|+|.|.|.+.+.
T Consensus 83 Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 83 DSASYICVVSDR 94 (114)
T ss_dssp GCSEEEEEEECS
T ss_pred hCcccceeeecC
Confidence 999999999874
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.8e-06 Score=70.24 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=52.3
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCe--eccCC------------CCeEEEe---eCceEEEEEecCCCCCCceeE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLLSS------------PKKREIF---DGENIILELKEADSETDAGDY 744 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~--~l~~~------------~~~~~~~---~~~~~~L~i~~v~~~~D~G~Y 744 (803)
+...+|++|+|.|.........+.|++... .+... .++.... ....++|.|.++ +.+|+|.|
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l-~~~DsG~Y 82 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL-KIEDSDTY 82 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSC-CGGGCEEE
T ss_pred EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCC-ChHHCEEE
Confidence 456789999999998877777899998532 11111 1111111 123467999999 89999999
Q ss_pred EEEEEccCcceeeeEEEEE
Q psy2776 745 KVVATNELGSATHGARVTV 763 (803)
Q Consensus 745 ~C~a~N~~G~~~~~~~l~V 763 (803)
.|.+.|. +..+.|.|
T Consensus 83 ~C~v~~~----~~~v~L~V 97 (97)
T d2nxyb1 83 ICEVEDQ----KEEVQLLV 97 (97)
T ss_dssp EEEETTE----EEEEEEEE
T ss_pred EEEEecC----CeEEEEEC
Confidence 9999773 44555554
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.08 E-value=1.1e-05 Score=66.55 Aligned_cols=73 Identities=11% Similarity=0.232 Sum_probs=54.4
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceec---c---------CCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPL---L---------SSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l---~---------~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..+..+.+.+|++|+|.|.....-...+.||+. |..+ . ...++....++..+.|.|.++ +.+|++
T Consensus 6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~-~~~DsA 84 (107)
T d1mexl1 6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNV-QSEDLA 84 (107)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC-CGGGCS
T ss_pred cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechh-heecce
Confidence 344557789999999999987665667999983 2111 0 234566666677899999999 899999
Q ss_pred eEEEEEEc
Q psy2776 743 DYKVVATN 750 (803)
Q Consensus 743 ~Y~C~a~N 750 (803)
.|.|.+..
T Consensus 85 ~YyCa~~~ 92 (107)
T d1mexl1 85 EYFCQQYN 92 (107)
T ss_dssp EEEEEECS
T ss_pred eEEEeECC
Confidence 99997664
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.1e-05 Score=66.74 Aligned_cols=90 Identities=23% Similarity=0.450 Sum_probs=71.6
Q ss_pred cCCCCCCCceEE-EecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee-eeeEEEEeccccCCeEEEEEEEE
Q psy2776 42 SAPGAPDTPEIV-GRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAV 119 (803)
Q Consensus 42 ~~p~~p~~~~~~-~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~ 119 (803)
+.|++|..+... .....+++|+|.+|...++.++..|.++.+.......|..... ....+.|.+|++...|.|+++|.
T Consensus 9 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~ 88 (107)
T d2crma1 9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCI 88 (107)
T ss_dssp CCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEE
T ss_pred CCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCCEEEEEEEEE
Confidence 567777766554 3568899999999988888899999999887666545554433 46789999999999999999999
Q ss_pred ccCccCCCccee
Q psy2776 120 NAIGTGPASHNT 131 (803)
Q Consensus 120 ~~~g~~~~s~~~ 131 (803)
|..|.+..+...
T Consensus 89 n~~G~s~~S~~v 100 (107)
T d2crma1 89 SDGGQSAVSESL 100 (107)
T ss_dssp ETTEECCCCCCC
T ss_pred CCCcCcCCCCcE
Confidence 999988776543
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.08 E-value=6.8e-06 Score=67.75 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=54.4
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeC--C-ee--c---------cCCCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--N-KP--L---------LSSPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~-~~--l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
+..+.+.+|++++|.|...+.....+.||+. | .+ | ....++....++..+.|.|.++ +.+|+|.|
T Consensus 7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~-~~~Dsa~Y 85 (106)
T d1lk3l1 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPV-EADDTAIY 85 (106)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGCEEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCc-ChhhCCCc
Confidence 3357789999999999998766678999983 1 11 1 1244666667778899999999 89999999
Q ss_pred EEEEEc
Q psy2776 745 KVVATN 750 (803)
Q Consensus 745 ~C~a~N 750 (803)
.|.+..
T Consensus 86 yCa~~~ 91 (106)
T d1lk3l1 86 FCQQSW 91 (106)
T ss_dssp EEEECS
T ss_pred cccccc
Confidence 996653
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.7e-06 Score=68.64 Aligned_cols=88 Identities=8% Similarity=0.010 Sum_probs=60.0
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.+...+ ...|..|++|+|.|... .+...+.|+|+|........ .....+....|.|.++ +..|+|.|+|...+.
T Consensus 4 KPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v-~~~~~G~Y~C~y~~~ 79 (95)
T d1olla1 4 KPFIWAEP-HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDM-NSRMAGQYSCIYRVG 79 (95)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSC-CGGGCEEEEEEEEET
T ss_pred CCEEEeeC-CCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeee-ecCCCceEEEEeCCC
Confidence 45555555 44578999999999874 45668999998864321100 0011245678999999 789999999999987
Q ss_pred Ccce--eeeEEEEE
Q psy2776 752 LGSA--THGARVTV 763 (803)
Q Consensus 752 ~G~~--~~~~~l~V 763 (803)
.+.. +..++|.|
T Consensus 80 ~~~S~~Sd~leL~V 93 (95)
T d1olla1 80 ELWSEPSNLLDLVV 93 (95)
T ss_dssp TEECCCCCCEEEEE
T ss_pred CCccCCCCCEEEEE
Confidence 7654 44455554
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.07 E-value=6.3e-06 Score=69.95 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=55.3
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceec------c--C--------------CCCeEEE-eeCce
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPL------L--S--------------SPKKREI-FDGEN 727 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l------~--~--------------~~~~~~~-~~~~~ 727 (803)
|.+...|..+.+.+|++++|.|.+.+.....+.|++. |..+ . . ..++... ..+..
T Consensus 2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 81 (122)
T d1nezg_ 2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK 81 (122)
T ss_dssp CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence 5566677788899999999999998888888999982 2211 0 0 0122211 23456
Q ss_pred EEEEEecCCCCCCceeEEEEEE
Q psy2776 728 IILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
++|.|.++ +.+|+|.|.|.+.
T Consensus 82 ~~L~I~~~-~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 82 YVLTLNKF-SKENEGYYFCSVI 102 (122)
T ss_dssp EEEEESSC-CGGGCEEEEEEEE
T ss_pred eEEEEccc-ccCCCEEEEeeEe
Confidence 78999999 8999999999876
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.06 E-value=5.8e-06 Score=70.20 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=53.2
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Ceecc-----------------------ceeEE---EecCe
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSLIK-----------------------GRNIT---YENNV 196 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~~~-----------------------~~~~~---~~~~~ 196 (803)
|.+...|..+.+.+|++++|.|...+.....+.|++. +..+. ..++. ..+..
T Consensus 2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 81 (122)
T d1nezg_ 2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK 81 (122)
T ss_dssp CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence 5566778888999999999999987766778999872 22110 00111 11234
Q ss_pred eEEEEecCCCCcceEEEEEEE
Q psy2776 197 ARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 197 ~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
.+|+|.+++.+|+|.|.|.+.
T Consensus 82 ~~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 82 YVLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp EEEEESSCCGGGCEEEEEEEE
T ss_pred eEEEEcccccCCCEEEEeeEe
Confidence 689999999999999999875
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.06 E-value=7.7e-06 Score=68.45 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=54.4
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--ee--c----------cCCCCeEEEe--eCceEEEEEecCCCCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP--L----------LSSPKKREIF--DGENIILELKEADSET 739 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~--l----------~~~~~~~~~~--~~~~~~L~i~~v~~~~ 739 (803)
...|..+.+.+|+.|+|+|...+.....+.|||.. .. + ....++.... ....+.|.|.++ +.+
T Consensus 4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~ 82 (113)
T d2bnqd1 4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAAS-QPG 82 (113)
T ss_dssp ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSC-CGG
T ss_pred EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecC-CCC
Confidence 34556678899999999999987766679999832 11 0 0112222222 345788999999 899
Q ss_pred CceeEEEEEEccCc
Q psy2776 740 DAGDYKVVATNELG 753 (803)
Q Consensus 740 D~G~Y~C~a~N~~G 753 (803)
|+|.|.|.+....+
T Consensus 83 Dsg~YyCa~~~~~~ 96 (113)
T d2bnqd1 83 DSATYLCAVRPTSG 96 (113)
T ss_dssp GCEEEEEEEEESSS
T ss_pred CCcEEeEeEecCCC
Confidence 99999999985543
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.7e-06 Score=67.14 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=57.8
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEE--EecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNIT--YENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.+|.+...+... |..|++|+|+|... .+...+.|+|++......... .......+.|.+|+.+|+|.|+|...+..
T Consensus 3 PKPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~ 80 (95)
T d1olla1 3 PKPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 80 (95)
T ss_dssp CCCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence 357777777554 67999999999975 345679999988643311111 11234679999999999999999988766
Q ss_pred cCeeeE
Q psy2776 221 GTAETS 226 (803)
Q Consensus 221 g~~~~s 226 (803)
.....+
T Consensus 81 ~~S~~S 86 (95)
T d1olla1 81 LWSEPS 86 (95)
T ss_dssp EECCCC
T ss_pred CccCCC
Confidence 544443
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.1e-05 Score=66.28 Aligned_cols=89 Identities=25% Similarity=0.427 Sum_probs=73.3
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEcc
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNA 121 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~ 121 (803)
..|++|....+......++.|+|.+|... +.++.+|.+.++..+.. .|.........+.|.+|.+...|.|+++|.|.
T Consensus 9 ~vP~~P~~l~v~~~s~~si~l~W~~P~~~-~g~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 86 (103)
T d1x5ga1 9 QLPGPAPNLRAYAASPTSITVTWETPVSG-NGEIQNYKLYYMEKGTD-KEQDVDVSSHSYTINGLKKYTEYSFRVVAYNK 86 (103)
T ss_dssp SCCCCCSSCEEEEEETTEEEEECCCCSCC-SSCCSEEEEEEEETTCC-CCCCEEECSSEEEECSCCTTCEEEEEEEEECS
T ss_pred CCcccCCCcEEEEccCCEEEEEEECCcCC-CccEEEEEEEEEeCCCc-eeEEEeccccEEecCCCCCCCEEEEEEEEEcC
Confidence 45777777888888899999999988764 45789999988876665 67777777889999999999999999999999
Q ss_pred CccCCCcceee
Q psy2776 122 IGTGPASHNTR 132 (803)
Q Consensus 122 ~g~~~~s~~~~ 132 (803)
.|.+..+....
T Consensus 87 ~G~g~~S~~v~ 97 (103)
T d1x5ga1 87 HGPGVSTPDVA 97 (103)
T ss_dssp SCCCCBCCCCC
T ss_pred CcCcCCCCCEE
Confidence 99887665543
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=4e-06 Score=69.77 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=50.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEee-cCCC--ceEEeeCCeeccCCCCeEEEee----CceEEEEEecCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKA-SPAP--SIVWFRNNKPLLSSPKKREIFD----GENIILELKEADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~--~v~W~~~~~~l~~~~~~~~~~~----~~~~~L~i~~v~~~~D~G~Y 744 (803)
.|.+.... .+.+|+.++|.|.+.| .|.+ .+.|++++..+........... ...++|.+.-. ..+|...|
T Consensus 4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~-~~D~g~~l 79 (109)
T d1vcaa1 4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV-IEDIGKVL 79 (109)
T ss_dssp CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC-GGGTTCEE
T ss_pred CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCC-hHHCCcEE
Confidence 55554322 4678999999999976 5755 6899999988752211000000 11345666554 34445579
Q ss_pred EEEEEccCcce
Q psy2776 745 KVVATNELGSA 755 (803)
Q Consensus 745 ~C~a~N~~G~~ 755 (803)
+|+|+|.++..
T Consensus 80 tC~a~~~~~~~ 90 (109)
T d1vcaa1 80 VCRAKLHIDEM 90 (109)
T ss_dssp EEEEEECSCCC
T ss_pred EEEEEcCcCCc
Confidence 99999987664
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.04 E-value=1.5e-05 Score=65.61 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=55.8
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCC--ee---c---------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---L---------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~---l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.........+.||+.. .. | ....++....++..+.|.|.++ +.+|+|
T Consensus 6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~~Dsa 84 (107)
T d1d5il1 6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSL-EYEDMG 84 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC-CGGGCE
T ss_pred eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEcccccc-CCcCCE
Confidence 4455678899999999999877666778999841 11 1 0224566666777889999999 799999
Q ss_pred eEEEEEEcc
Q psy2776 743 DYKVVATNE 751 (803)
Q Consensus 743 ~Y~C~a~N~ 751 (803)
.|.|.+...
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1d5il1 85 IYYCLQYDE 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEeeeccC
Confidence 999987654
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.9e-05 Score=64.99 Aligned_cols=91 Identities=27% Similarity=0.470 Sum_probs=73.2
Q ss_pred ecCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee-eeeEEEEeccccCCeEEEEEEEE
Q psy2776 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAV 119 (803)
Q Consensus 41 ~~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~ 119 (803)
-.+|++|..+.+......+++|+|.+|.. ++.++..|.++.+.......+..... ....+.+.+|.+...|.|+++|.
T Consensus 8 ~~~P~~P~~~~~~~~~~~sv~l~W~pp~~-~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~ 86 (105)
T d1x3da1 8 SCEPDIPNPPRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSAR 86 (105)
T ss_dssp CSCCCCCCCCEEEEEETTEEEEECCCCCC-CSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEE
T ss_pred CCCCcCCCCCEEEEccCCEEEEEEECCCC-CcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEEEEEE
Confidence 35777888888888899999999999865 45789999998886655534444443 46789999999999999999999
Q ss_pred ccCccCCCcceee
Q psy2776 120 NAIGTGPASHNTR 132 (803)
Q Consensus 120 ~~~g~~~~s~~~~ 132 (803)
|..|.+..+....
T Consensus 87 N~~G~s~~S~~~~ 99 (105)
T d1x3da1 87 NDYGTSGFSEEVL 99 (105)
T ss_dssp ESSCBCCCCCCEE
T ss_pred CCCeEcCCCCcEE
Confidence 9999887776554
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=98.02 E-value=1e-05 Score=66.12 Aligned_cols=91 Identities=24% Similarity=0.459 Sum_probs=68.5
Q ss_pred EecCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEE
Q psy2776 40 LLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRV 116 (803)
Q Consensus 40 V~~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c 116 (803)
|.+.|.+|....+. ....+++|+|.+|.. ++.++..|.++++.......|..... ....+.+.+|.+...|.|++
T Consensus 2 V~dvP~~P~~~~v~-~~~~sv~lsW~pp~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV 79 (100)
T d1cfba1 2 VQDVPNAPKLTGIT-CQADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRV 79 (100)
T ss_dssp CCCCCCCCEEEEEE-ECSSEEEEEEECCCC-TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEE
T ss_pred cccCCCcCcCcEEE-EcCCEEEEEEcCCcc-cccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEE
Confidence 56788888766654 456799999998865 45788999998886555433333222 24678899999999999999
Q ss_pred EEEccCccCCCcceee
Q psy2776 117 AAVNAIGTGPASHNTR 132 (803)
Q Consensus 117 ~a~~~~g~~~~s~~~~ 132 (803)
+|.|..|.+..+..+.
T Consensus 80 ~A~n~~G~g~~S~~s~ 95 (100)
T d1cfba1 80 IAFNKIGASPPSAHSD 95 (100)
T ss_dssp EEEETTEECCCCCCCC
T ss_pred EEEeCCcCCCCcCCCc
Confidence 9999999988776544
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.02 E-value=5.4e-06 Score=69.62 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=53.1
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc------------CCCCeEEEe--eCceEEEEEecCCCCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------SSPKKREIF--DGENIILELKEADSET 739 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~------------~~~~~~~~~--~~~~~~L~i~~v~~~~ 739 (803)
...+..+.+.+|+.|+|+|.........+.|||. |..+. ...++.... ....+.|.|.++ +.+
T Consensus 5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~ 83 (115)
T d1lp9e1 5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSA-QLS 83 (115)
T ss_dssp EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSC-CGG
T ss_pred EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccc-ccc
Confidence 3445567899999999999998777778999984 21110 122333332 234567999999 899
Q ss_pred CceeEEEEEEcc
Q psy2776 740 DAGDYKVVATNE 751 (803)
Q Consensus 740 D~G~Y~C~a~N~ 751 (803)
|+|.|.|.+...
T Consensus 84 Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 84 DSALYYCALFLA 95 (115)
T ss_dssp GCEEEEEEEEEC
T ss_pred cCccceEEEEcC
Confidence 999999988754
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=7.2e-06 Score=69.15 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=56.8
Q ss_pred ccceeEEecCCeEEEEEEEeec---CCCceEEeeCCe--e---c---------cCCCCeEEEe--eCceEEEEEecCCCC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNK--P---L---------LSSPKKREIF--DGENIILELKEADSE 738 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~---p~~~v~W~~~~~--~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~ 738 (803)
.|..+.+.+|++|+|.|...+. ....+.|++... . + ....+..+.. ......|.|.++ +.
T Consensus 5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l-~~ 83 (116)
T d1xeda_ 5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQL-SQ 83 (116)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSC-CG
T ss_pred CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhh-Cc
Confidence 4556788899999999987532 223578987421 1 1 1223344433 345688999999 89
Q ss_pred CCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 739 TDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+|+|.|.|.+.+.-......+.|+|.
T Consensus 84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~ 109 (116)
T d1xeda_ 84 DDSGRYKCGLGINSRGLSFDVSLEVL 109 (116)
T ss_dssp GGCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred CCCEEEEEEEEcCCCCceEeEEEEEE
Confidence 99999999987554444555666663
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.3e-06 Score=68.67 Aligned_cols=65 Identities=12% Similarity=0.273 Sum_probs=46.8
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcCeecc---------------ceeEEE-----ecCeeEEEEecCCCCcceEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---------------GRNITY-----ENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~---------------~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+...+|++++|.|.........+.|++...... ..++.. ..+..+|.|.+++.+|+|.|.
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~ 83 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence 445689999999998876666799998543210 011111 123457999999999999999
Q ss_pred EEEEc
Q psy2776 214 CKATN 218 (803)
Q Consensus 214 C~a~n 218 (803)
|.+.+
T Consensus 84 C~v~~ 88 (97)
T d2nxyb1 84 CEVED 88 (97)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99865
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.2e-05 Score=64.69 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCce-eEEEeeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM-VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
|.||..+.+....+.+++|+|.+|. +++.++.+|.++++..+... ...........+.|.+|.+...|.|++.|.|..
T Consensus 1 P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~ 79 (93)
T d2vkwa2 1 PSAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ 79 (93)
T ss_dssp CCCCEEEEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCccCEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCC
Confidence 5566666666677899999999986 56788999999988766531 112233346789999999999999999999999
Q ss_pred ccCCCcc
Q psy2776 123 GTGPASH 129 (803)
Q Consensus 123 g~~~~s~ 129 (803)
|.+.++.
T Consensus 80 G~s~ps~ 86 (93)
T d2vkwa2 80 GKSKAAH 86 (93)
T ss_dssp EECCCEE
T ss_pred CCcCCEe
Confidence 9887653
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.98 E-value=1.6e-05 Score=66.70 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=55.5
Q ss_pred eEeccceeEEecCCeEEEEEEEeec-CCCceEEeeC---Cee--cc------------CCCCeEEEee--CceEEEEEec
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN---NKP--LL------------SSPKKREIFD--GENIILELKE 734 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~---~~~--l~------------~~~~~~~~~~--~~~~~L~i~~ 734 (803)
+...+..+.+.+|++|+|.|...+. ....+.||+. ..+ |. ...|+.+..+ ...+.|.|.+
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP 82 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence 3445556789999999999998654 5567999972 211 10 2235554433 3457899999
Q ss_pred CCCCCCceeEEEEEEccCcce
Q psy2776 735 ADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+ +.+|+|.|.|.+....+..
T Consensus 83 ~-~~~Dsg~YyCa~~~~~~~~ 102 (116)
T d1tvda_ 83 V-RTEDSATYYCAFTLPPPTD 102 (116)
T ss_dssp C-CGGGCEEEEEEEECTTTTC
T ss_pred c-cccccccceeeEecCCCCc
Confidence 9 8999999999887655443
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.97 E-value=1.6e-05 Score=65.82 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=53.6
Q ss_pred eccceeEEecCCeEEEEEEEeec-CCCceEEeeC--Cee---c---------cCCCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--NKP---L---------LSSPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
..|..+.+.+|++++|.|...+. ....+.||+. |.. | ....++....++..+.|.|.++ +.+|+
T Consensus 6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~-~~~Ds 84 (108)
T d2fx7l1 6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRL-EPEDF 84 (108)
T ss_dssp CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSC-CGGGC
T ss_pred eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHh-eeccc
Confidence 34556788999999999998654 3346889984 221 1 1234566666677889999999 89999
Q ss_pred eeEEEEEEc
Q psy2776 742 GDYKVVATN 750 (803)
Q Consensus 742 G~Y~C~a~N 750 (803)
|.|.|.+.+
T Consensus 85 a~YyCa~~~ 93 (108)
T d2fx7l1 85 AVYYCQQYG 93 (108)
T ss_dssp SEEEEEECS
T ss_pred EEEeeecCC
Confidence 999998764
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=9.6e-06 Score=68.34 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=54.8
Q ss_pred CcCeeeecCCcEEEEEEECcc---CCCeeEEEEcCeecc---------------ceeEEE----ecCeeEEEEecCCCCc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSLIK---------------GRNITY----ENNVARFTVVNCSESS 208 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~---p~p~i~W~~~~~~~~---------------~~~~~~----~~~~~~L~i~~v~~~d 208 (803)
|+.+.+.+|++++|.|..... ....+.|++....-. ..+... ..+..+|+|.+++.+|
T Consensus 6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D 85 (116)
T d1xeda_ 6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 85 (116)
T ss_dssp CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence 466788899999999997532 223478987442110 011111 2245789999999999
Q ss_pred ceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 209 EGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
+|.|.|.+..........+.|.|.+.
T Consensus 86 sG~Y~C~v~~~~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 86 SGRYKCGLGINSRGLSFDVSLEVLEH 111 (116)
T ss_dssp CEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred CEEEEEEEEcCCCCceEeEEEEEECC
Confidence 99999998755444455567777654
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.96 E-value=6.6e-06 Score=67.89 Aligned_cols=73 Identities=7% Similarity=0.063 Sum_probs=54.3
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCC--e-e-----------ccCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K-P-----------LLSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~-~-----------l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.........+.||+.. . + .....++....++..+.|.|.++ +.+|+|
T Consensus 6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~-~~~Dsa 84 (107)
T d3cx5k1 6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNL-EPEDIA 84 (107)
T ss_dssp EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCC-CSCCCS
T ss_pred CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEe-eecCCC
Confidence 4455677899999999999877777779999832 1 1 11223444455667889999999 899999
Q ss_pred eEEEEEEc
Q psy2776 743 DYKVVATN 750 (803)
Q Consensus 743 ~Y~C~a~N 750 (803)
.|.|.+.+
T Consensus 85 ~YyCa~~~ 92 (107)
T d3cx5k1 85 TYFCQHHI 92 (107)
T ss_dssp EEEEEECS
T ss_pred cEEeeeCC
Confidence 99997653
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.95 E-value=9.7e-06 Score=66.45 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.7
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCC--eec------------cCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL------------LSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+.+.+|++|+|.|...+.....+.||+.. ..+ ....++....+...+.|.|.++ +.+|+|.|.|
T Consensus 7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~Dsa~YyC 85 (103)
T d8faba1 7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGV-QAEDEADYYC 85 (103)
T ss_dssp EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTC-CGGGCEEEEE
T ss_pred eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCc-chhHCceEEe
Confidence 467889999999999876666678999841 111 1233455566677899999999 7999999999
Q ss_pred EEEcc
Q psy2776 747 VATNE 751 (803)
Q Consensus 747 ~a~N~ 751 (803)
.+.+.
T Consensus 86 A~~~~ 90 (103)
T d8faba1 86 QAWDN 90 (103)
T ss_dssp EEEET
T ss_pred eecCC
Confidence 87653
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.94 E-value=1.8e-05 Score=65.53 Aligned_cols=74 Identities=8% Similarity=0.132 Sum_probs=56.3
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--e---ec---------cCCCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K---PL---------LSSPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~---~l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
...|..+.+.+|++++|.|...+.-...+.||+.. . .| ....++....++....|.|.++ +.+|+
T Consensus 7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l-~~~Ds 85 (109)
T d1bwwa_ 7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSL-QPEDI 85 (109)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGC
T ss_pred EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeec-eeCcC
Confidence 34566788999999999999987666678999831 1 11 1234566666777889999999 79999
Q ss_pred eeEEEEEEc
Q psy2776 742 GDYKVVATN 750 (803)
Q Consensus 742 G~Y~C~a~N 750 (803)
|.|.|.+..
T Consensus 86 a~YyCA~~~ 94 (109)
T d1bwwa_ 86 ATYYCQQYQ 94 (109)
T ss_dssp EEEEEEECS
T ss_pred ceEEEeecC
Confidence 999998764
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.94 E-value=1.9e-05 Score=65.27 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=54.9
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ce-e--cc---------CCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK-P--LL---------SSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~-~--l~---------~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++++|.|.........+.||+. ++ + |. ...++....++..+.|.|.++ +.+|+|
T Consensus 6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~-~~~DSa 84 (109)
T d1mqkl_ 6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSL-LPEDFG 84 (109)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGCE
T ss_pred CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccc-cccCCe
Confidence 445667889999999999987666667999983 11 1 10 234566666777899999999 899999
Q ss_pred eEEEEEE
Q psy2776 743 DYKVVAT 749 (803)
Q Consensus 743 ~Y~C~a~ 749 (803)
.|.|.+.
T Consensus 85 ~YyCA~~ 91 (109)
T d1mqkl_ 85 SYYCQHH 91 (109)
T ss_dssp EEEEEEC
T ss_pred eEEEeee
Confidence 9999876
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.94 E-value=1.4e-05 Score=66.87 Aligned_cols=73 Identities=16% Similarity=0.341 Sum_probs=52.0
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc-------------ceeEE----EecCeeEEEEecCCCCcc
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK-------------GRNIT----YENNVARFTVVNCSESSE 209 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~-------------~~~~~----~~~~~~~L~i~~v~~~d~ 209 (803)
..|..+.+.+|++++|.|.........+.||+... ... ..++. ......+|+|.+++.+|+
T Consensus 5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds 84 (114)
T d2cdea1 5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS 84 (114)
T ss_dssp EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence 34566778899999999998866666799998331 100 00111 123467899999999999
Q ss_pred eEEEEEEEcCCc
Q psy2776 210 GRYTCKATNEAG 221 (803)
Q Consensus 210 G~Y~C~a~n~~g 221 (803)
|.|.|.+....+
T Consensus 85 g~Y~Ca~~~~~~ 96 (114)
T d2cdea1 85 ASYICVVSDRGS 96 (114)
T ss_dssp SEEEEEEECSCT
T ss_pred cccceeeecCCC
Confidence 999999887543
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.94 E-value=8.5e-06 Score=69.05 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=53.5
Q ss_pred eccceeEEecCCeEEEEEEEeec----CCCceEEeeCCe------ec---------c-----CCCCeEEEe--eCceEEE
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKAS----PAPSIVWFRNNK------PL---------L-----SSPKKREIF--DGENIIL 730 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~~~~------~l---------~-----~~~~~~~~~--~~~~~~L 730 (803)
..+.++.+..|++++|.|..... ....+.|++... .+ . ...|+.... ....+.|
T Consensus 4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 83 (119)
T d1neua_ 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI 83 (119)
T ss_dssp ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence 44567788999999999987532 223689987321 00 0 012333221 2334679
Q ss_pred EEecCCCCCCceeEEEEEEccCcce--eeeEEEEE
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSA--THGARVTV 763 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V 763 (803)
.|.++ +.+|+|.|.|.+.|.-+.. ...+.|.|
T Consensus 84 ~I~~v-~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V 117 (119)
T d1neua_ 84 VIHNL-DYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117 (119)
T ss_dssp EECSC-CGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred EECCC-ChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence 99999 8999999999999865433 44455554
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.93 E-value=1.2e-05 Score=66.73 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=48.8
Q ss_pred eeEEecCCeEEEEEEEeec-CCCceEEeeC--Ceecc------------CCCCeEEEeeCceEEEEEecCCCCCCceeEE
Q psy2776 681 EKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--NKPLL------------SSPKKREIFDGENIILELKEADSETDAGDYK 745 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
.+.+.+|++|+|.|...+. ....+.||+. |..+. ...++....+...+.|.|.++ +.+|+|.|.
T Consensus 7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~Dsa~Yy 85 (110)
T d2esvd1 7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHA-TLRDTAVYY 85 (110)
T ss_dssp EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSC-CGGGCEEEE
T ss_pred EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhccc-ccCCceEEE
Confidence 4678899999999997654 3456889983 21110 112223333456788999999 799999999
Q ss_pred EEEEcc
Q psy2776 746 VVATNE 751 (803)
Q Consensus 746 C~a~N~ 751 (803)
|.+...
T Consensus 86 Ca~~~~ 91 (110)
T d2esvd1 86 CIVVRS 91 (110)
T ss_dssp EEEEES
T ss_pred EEEeCC
Confidence 988643
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.93 E-value=2.7e-05 Score=64.81 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=53.2
Q ss_pred eccceeEEecCCeEEEEEEEeec---C---CCceEEeeC--Cee------------ccCCCCeEEEeeCceEEEEEecCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKAS---P---APSIVWFRN--NKP------------LLSSPKKREIFDGENIILELKEAD 736 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~---p---~~~v~W~~~--~~~------------l~~~~~~~~~~~~~~~~L~i~~v~ 736 (803)
..|..+.+.+|++++|.|...+. . ...+.||+. |.. -....++....++....|.|.++
T Consensus 6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l- 84 (113)
T d1q9ra1 6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV- 84 (113)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC-
T ss_pred ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc-
Confidence 44566789999999999987643 1 124899984 221 11234566666777889999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+.+
T Consensus 85 ~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 85 QAEDLAVYYCKQSY 98 (113)
T ss_dssp CGGGCEEEEEEECS
T ss_pred ccCCCeEEEecccC
Confidence 89999999998764
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=97.93 E-value=2.8e-05 Score=64.48 Aligned_cols=75 Identities=12% Similarity=0.254 Sum_probs=55.3
Q ss_pred EeccceeEEecCCeEEEEEEEeec--CCCceEEeeC------CeeccCCCCeEEEee--CceEEEEEecCCCCCCceeEE
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKAS--PAPSIVWFRN------NKPLLSSPKKREIFD--GENIILELKEADSETDAGDYK 745 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~------~~~l~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
...|..+.+.+|+.++|.|...+. ....+.||+. ...+..+.++....+ ...+.|.|.++ +.+|+|.|.
T Consensus 3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l-~~~Dsa~Yy 81 (112)
T d1sq2n_ 3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDL-TVEDGGTYR 81 (112)
T ss_dssp EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSC-CGGGCEEEE
T ss_pred EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCC-cCccCEEEe
Confidence 345566788899999999998653 4567999983 223445556655544 34678999999 899999999
Q ss_pred EEEEcc
Q psy2776 746 VVATNE 751 (803)
Q Consensus 746 C~a~N~ 751 (803)
|.+.-.
T Consensus 82 CA~~~~ 87 (112)
T d1sq2n_ 82 CGLGVA 87 (112)
T ss_dssp EEECBT
T ss_pred EEEecC
Confidence 987654
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.93 E-value=3.2e-05 Score=64.43 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=55.9
Q ss_pred eEeccceeEEecCCeEEEEEEEeec--CCCceEEeeC--Ce----eccCCCCeEEEee--CceEEEEEecCCCCCCceeE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKAS--PAPSIVWFRN--NK----PLLSSPKKREIFD--GENIILELKEADSETDAGDY 744 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~--~~----~l~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y 744 (803)
+...|..+.+.+|++|+|+|...+. ....+.||+. |. .+....++....+ ...+.|.|.++ +.+|+|.|
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~Dsa~Y 81 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDL-RVEDSGTY 81 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSC-CGGGCEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeeccc-ccCCcceE
Confidence 4455667788999999999999754 4456899973 21 2334556655554 34578999999 89999999
Q ss_pred EEEEEcc
Q psy2776 745 KVVATNE 751 (803)
Q Consensus 745 ~C~a~N~ 751 (803)
.|.+...
T Consensus 82 yCa~~~~ 88 (113)
T d1vesa_ 82 KCQAFYS 88 (113)
T ss_dssp EEEEEEE
T ss_pred eeeeecc
Confidence 9998654
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.92 E-value=4.2e-05 Score=63.33 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=54.0
Q ss_pred eccceeEEecCCeEEEEEEEeec-CC---CceEEeeC--Ceec------------cCCCCeEEEeeCceEEEEEecCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKAS-PA---PSIVWFRN--NKPL------------LSSPKKREIFDGENIILELKEADSE 738 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~-p~---~~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~ 738 (803)
..|..+.+.+|++|+|.|...+. .. ..+.||+. |..+ ....++.....+..+.|.|.++ +.
T Consensus 6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~-~~ 84 (111)
T d2gsia1 6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPV-EE 84 (111)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CG
T ss_pred eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccc-cc
Confidence 44556789999999999988642 22 24889984 2211 0235666666777899999999 79
Q ss_pred CCceeEEEEEEcc
Q psy2776 739 TDAGDYKVVATNE 751 (803)
Q Consensus 739 ~D~G~Y~C~a~N~ 751 (803)
+|+|.|.|.+.+.
T Consensus 85 ~DsA~YyCa~~~~ 97 (111)
T d2gsia1 85 EDAATYYCSHIRE 97 (111)
T ss_dssp GGCEEEEEEECSS
T ss_pred cCCceEEEEECCC
Confidence 9999999987654
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.92 E-value=1.8e-05 Score=64.97 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=52.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceee-----------c-CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEI-----------T-DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i-----------~-~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.........+.|++. |... . ...++..........|.|.++..+|+|.|.|.
T Consensus 9 ~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa 88 (106)
T d1a0ql1 9 SLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCL 88 (106)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEE
Confidence 56789999999999987666667899973 2111 0 12355555555678999999999999999998
Q ss_pred EEcC
Q psy2776 583 ATNA 586 (803)
Q Consensus 583 a~n~ 586 (803)
+.+.
T Consensus 89 ~~~~ 92 (106)
T d1a0ql1 89 QYYN 92 (106)
T ss_dssp ECSS
T ss_pred EeCC
Confidence 7653
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.92 E-value=2.4e-05 Score=65.00 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=52.5
Q ss_pred eeEEecCCeEEEEEEEeecC--CCceEEeeCC--ee---c---------cCCCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KP---L---------LSSPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~--~~---l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
.+.+.+|++++|.|...+.- ...+.||+.. .. | ....++....++..+.|.|.++ +.+|++.|
T Consensus 9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~DsA~Y 87 (114)
T d2rhea_ 9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGL-ESEDEADY 87 (114)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSC-CGGGCEEE
T ss_pred cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEeccc-CcccCceE
Confidence 46788999999999987653 4568999842 11 1 1234566666778899999999 89999999
Q ss_pred EEEEEc
Q psy2776 745 KVVATN 750 (803)
Q Consensus 745 ~C~a~N 750 (803)
.|.+..
T Consensus 88 yCA~~~ 93 (114)
T d2rhea_ 88 YCAAWN 93 (114)
T ss_dssp EEEEEE
T ss_pred EEeecC
Confidence 998863
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1.5e-05 Score=66.67 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=55.2
Q ss_pred eEeccceeEEecCCeEEEEEEEeec-CCCceEEeeCC----e-ec---------------cCCCCeEEEeeCceEEEEEe
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN----K-PL---------------LSSPKKREIFDGENIILELK 733 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~----~-~l---------------~~~~~~~~~~~~~~~~L~i~ 733 (803)
+...|...++.+|++|+|.|...+. ....+.||+.. . ++ ....++.....+....|.|.
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~ 82 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS 82 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence 3445667788999999999998654 34568999832 1 11 01235556666778899999
Q ss_pred cCCCCCCceeEEEEEEc
Q psy2776 734 EADSETDAGDYKVVATN 750 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N 750 (803)
++ +.+|+|.|.|.+..
T Consensus 83 ~l-~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 83 DF-RRENEGYYFCSALS 98 (114)
T ss_dssp SC-CGGGCEEEEEEEEE
T ss_pred cC-CCCCCEEEeEeEcC
Confidence 99 79999999999874
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.92 E-value=1.7e-05 Score=66.36 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=52.3
Q ss_pred EeccceeEEecCCeEEEEEEEeec-CCCceEEeeC--Ceecc-------------CCCCeEE--EeeCceEEEEEecCCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--NKPLL-------------SSPKKRE--IFDGENIILELKEADS 737 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--~~~l~-------------~~~~~~~--~~~~~~~~L~i~~v~~ 737 (803)
...+..+.+.+|++|+|.|..... ....+.||+. +..+. ...+... ...+..+.|.|.++ +
T Consensus 4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~ 82 (114)
T d2ak4d1 4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS-Q 82 (114)
T ss_dssp ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC-C
T ss_pred EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc-c
Confidence 344556789999999999987643 3445789983 21110 0111122 22345788999999 8
Q ss_pred CCCceeEEEEEEccCcc
Q psy2776 738 ETDAGDYKVVATNELGS 754 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~G~ 754 (803)
.+|+|.|.|.+....+.
T Consensus 83 ~~Dsg~YyCa~~~~~~~ 99 (114)
T d2ak4d1 83 VVDSAVYFCALSGFYNT 99 (114)
T ss_dssp GGGCEEEEEEEECSBTT
T ss_pred cccCCCceEeCCCCCCC
Confidence 99999999998876543
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=8.1e-06 Score=67.81 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=52.0
Q ss_pred EEeecceeEEEEEEcC-cCCC--eeEEeeCCeeecCCCcEEEEecC----CeEEEEEeeeccCcCeEEEEEEEcCCCC--
Q psy2776 519 RLSVKSQWKVEVKYFG-FPRP--EISWMKNGAEITDSKACRIFIDE----ETSTIAIYSVVRADTSTYTVTATNAAGS-- 589 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g-~p~~--~v~W~~~g~~i~~~~~~~~~~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-- 589 (803)
.+.+|+.++|+|.+.+ +|.+ .+.|++++..+............ ..+.|.+.....+|...|+|+|+|..+.
T Consensus 12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~ 91 (109)
T d1vcaa1 12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 91 (109)
T ss_dssp CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence 3678999999999875 6654 68899999877532110000000 1245666654445555899999988544
Q ss_pred -----eEEEEEEEEeee
Q psy2776 590 -----TSLDLSLQVLGY 601 (803)
Q Consensus 590 -----~s~s~~l~V~~~ 601 (803)
...+..|.|...
T Consensus 92 ~~~~~~~t~~~L~V~~~ 108 (109)
T d1vcaa1 92 SVPTVRQAVKELQVYIS 108 (109)
T ss_dssp TSCSEEEEEEECCEECC
T ss_pred ccccccceeEEeEEEeC
Confidence 234455666554
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.90 E-value=1.8e-05 Score=65.18 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=50.1
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec---------------cceeEEEecCeeEEEEecCCCCcceE
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI---------------KGRNITYENNVARFTVVNCSESSEGR 211 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~---------------~~~~~~~~~~~~~L~i~~v~~~d~G~ 211 (803)
..|..+.+.+|++++|.|.........+.||+.. ..+ .............|+|.+++++|+|.
T Consensus 6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~ 85 (107)
T d1j1pl_ 6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM 85 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEE
Confidence 3455677889999999999875555579999743 111 01122334566789999999999999
Q ss_pred EEEEEEc
Q psy2776 212 YTCKATN 218 (803)
Q Consensus 212 Y~C~a~n 218 (803)
|.|.+.+
T Consensus 86 YyCa~~~ 92 (107)
T d1j1pl_ 86 YFCQQAN 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEEcCC
Confidence 9997653
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.90 E-value=1.6e-05 Score=65.29 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=51.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceee----------c--CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEI----------T--DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i----------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.........+.|+|. |... . ...++..........|.|.++..+|+|.|.|.
T Consensus 10 slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa 89 (106)
T d1i8ka_ 10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCL 89 (106)
T ss_dssp EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEe
Confidence 56688999999999987666667899863 2211 1 12455555555678999999999999999998
Q ss_pred EEcC
Q psy2776 583 ATNA 586 (803)
Q Consensus 583 a~n~ 586 (803)
+.+.
T Consensus 90 ~~~~ 93 (106)
T d1i8ka_ 90 QSFN 93 (106)
T ss_dssp ECSS
T ss_pred cCcc
Confidence 7543
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.90 E-value=4.5e-05 Score=63.19 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=52.9
Q ss_pred eccceeEEecCCeEEEEEEEeecC-----CCceEEeeC--Cee------------ccCCCCeEEEeeCceEEEEEecCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASP-----APSIVWFRN--NKP------------LLSSPKKREIFDGENIILELKEADS 737 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p-----~~~v~W~~~--~~~------------l~~~~~~~~~~~~~~~~L~i~~v~~ 737 (803)
..|..+.+.+|++|+|.|+..+.. ...+.||+. |.. .....++.....+..+.|.|.++ +
T Consensus 6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~-~ 84 (112)
T d1ncwl1 6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV-E 84 (112)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-C
T ss_pred CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc-c
Confidence 445667899999999999976533 235889974 111 11234555556677889999999 8
Q ss_pred CCCceeEEEEEEcc
Q psy2776 738 ETDAGDYKVVATNE 751 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~ 751 (803)
.+|+|.|.|...+.
T Consensus 85 ~eDsAvYYC~~~~~ 98 (112)
T d1ncwl1 85 AEDLGVYYCWQGTH 98 (112)
T ss_dssp GGGCEEEEEEECSS
T ss_pred cCcCEeEEEEcCCC
Confidence 99999999966543
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.90 E-value=3.8e-05 Score=62.84 Aligned_cols=72 Identities=8% Similarity=0.115 Sum_probs=52.2
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eec------------cCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL------------LSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|..+.+.+|++|+|.|.... ....+.||+.. ..+ ....++....++..+.|.|.++ +.+|+|
T Consensus 5 QsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~-~~~Dsa 82 (104)
T d1yqvl1 5 QSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSM-ETEDAA 82 (104)
T ss_dssp EESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGCE
T ss_pred CcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEeccc-CcccCC
Confidence 4456678999999999998753 34468999842 110 0233455556677899999999 899999
Q ss_pred eEEEEEEc
Q psy2776 743 DYKVVATN 750 (803)
Q Consensus 743 ~Y~C~a~N 750 (803)
.|.|.+..
T Consensus 83 ~YyCa~~~ 90 (104)
T d1yqvl1 83 TYYCQQWG 90 (104)
T ss_dssp EEEEEECS
T ss_pred eEEEEecC
Confidence 99997653
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=7.6e-05 Score=59.77 Aligned_cols=89 Identities=20% Similarity=0.387 Sum_probs=71.5
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
+|.+|....+......+++|+|.+|...++..+..|.+...+.+.. |... .....++|.+|++...|.|+++|.|..
T Consensus 2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~--~~~~-~~~t~~~i~~L~p~t~Y~~rV~A~n~~ 78 (94)
T d1x5aa1 2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE--WHQM-VLEPRVLLTKLQPDTTYIVRVRTLTPL 78 (94)
T ss_dssp CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE--EEEE-ESSSEEEEESCCSSCEEEEEEEEECSS
T ss_pred cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce--EEEe-eccCEEEECCCCCCCEEEEEEEEEcCC
Confidence 5667777888888899999999998776677777899988876653 3322 346789999999999999999999999
Q ss_pred ccCCCcceeeEE
Q psy2776 123 GTGPASHNTRYV 134 (803)
Q Consensus 123 g~~~~s~~~~~~ 134 (803)
|.+..+......
T Consensus 79 G~g~~S~~~~~~ 90 (94)
T d1x5aa1 79 GPGPFSPDHEFR 90 (94)
T ss_dssp SCCCCCCCEEEE
T ss_pred cCcCCCCCEEEE
Confidence 998877655443
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=3.9e-05 Score=63.97 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=53.6
Q ss_pred eccceeEEecCCeEEEEEEEeec-CCCceEEeeC--C-ee--c----------cCCCCeEEEee--CceEEEEEecCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN--N-KP--L----------LSSPKKREIFD--GENIILELKEADSE 738 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--~-~~--l----------~~~~~~~~~~~--~~~~~L~i~~v~~~ 738 (803)
..|..+.+.+|++|+|.|...+. ....+.||+. | .+ | ....++.+..+ +..+.|.|.++ +.
T Consensus 4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~~ 82 (114)
T d3bp5a1 4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT-RR 82 (114)
T ss_dssp EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSC-CG
T ss_pred ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECcc-Cc
Confidence 45567789999999999998654 3346889983 2 11 1 13445655543 34678999999 89
Q ss_pred CCceeEEEEEEcc
Q psy2776 739 TDAGDYKVVATNE 751 (803)
Q Consensus 739 ~D~G~Y~C~a~N~ 751 (803)
+|+|.|.|.+...
T Consensus 83 ~Dsg~YyCa~~~~ 95 (114)
T d3bp5a1 83 NDSGIYLCGAISL 95 (114)
T ss_dssp GGCEEEEEEEECS
T ss_pred CCCeEEEEEEEeC
Confidence 9999999988754
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.89 E-value=1.2e-05 Score=67.49 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=53.4
Q ss_pred ccceeEEecCCeEEEEEEEeecCCCceEEeeCC--e-e--c---------cCCCCeEEEeeCceEEEEEecCCCCCCcee
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K-P--L---------LSSPKKREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~-~--l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
.|..+.+.+|++++|.|...+.-...+.||+.. . + | ....++....++..+.|.|.++ +.+|+|.
T Consensus 7 ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~-~~~Dsav 85 (119)
T d1f3rb2 7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSL-QPEDVAT 85 (119)
T ss_dssp ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSC-CGGGCSE
T ss_pred cCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccC-ccCCCeE
Confidence 344567889999999999876555679999842 1 1 1 1234555556677789999999 8999999
Q ss_pred EEEEEEc
Q psy2776 744 YKVVATN 750 (803)
Q Consensus 744 Y~C~a~N 750 (803)
|.|.+.+
T Consensus 86 YyCa~~~ 92 (119)
T d1f3rb2 86 YFCYQYN 92 (119)
T ss_dssp EEEEEES
T ss_pred EEeeccC
Confidence 9998765
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.88 E-value=2e-05 Score=65.52 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=50.0
Q ss_pred ccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc------------CCCCeEEE--eeCceEEEEEecCCCCCCc
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------SSPKKREI--FDGENIILELKEADSETDA 741 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~------------~~~~~~~~--~~~~~~~L~i~~v~~~~D~ 741 (803)
.|..+.+.+|++++|.|...+.-...+.||+. |.... ...+.... ..+..+.|.|.++ +.+|+
T Consensus 5 ~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~Ds 83 (110)
T d1u3ha1 5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADS-QPGDS 83 (110)
T ss_dssp SCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSC-CTTSC
T ss_pred cCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccC-CCCCc
Confidence 44567789999999999987655557999984 21110 11122222 2355788999999 89999
Q ss_pred eeEEEEEE
Q psy2776 742 GDYKVVAT 749 (803)
Q Consensus 742 G~Y~C~a~ 749 (803)
|.|.|.+.
T Consensus 84 a~YyCa~~ 91 (110)
T d1u3ha1 84 ATYFCAAS 91 (110)
T ss_dssp SEEEECCE
T ss_pred eeEeeeec
Confidence 99999886
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.87 E-value=2.1e-05 Score=64.73 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=52.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|...+.....+.|+|. |... ....++..........|.|.++..+|+|.|.|.
T Consensus 10 ~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa 89 (107)
T d1ospl1 10 SFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQ 89 (107)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEe
Confidence 57789999999999988766667999973 2110 112456555555678999999999999999998
Q ss_pred EEcC
Q psy2776 583 ATNA 586 (803)
Q Consensus 583 a~n~ 586 (803)
+...
T Consensus 90 ~~~~ 93 (107)
T d1ospl1 90 QYWS 93 (107)
T ss_dssp ECSS
T ss_pred eccC
Confidence 7643
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.86 E-value=2.9e-05 Score=64.80 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=50.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee----e--------cCCCcEEEE--ecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE----I--------TDSKACRIF--IDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~----i--------~~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+.++|+|.+.+.....+.|+|. |.. + ....++... .......|.|.++..+|+|.|.
T Consensus 9 ~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Yy 88 (113)
T d2bnqd1 9 ALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYL 88 (113)
T ss_dssp EEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred EEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEe
Confidence 57789999999999998766677899973 211 0 011222222 2234579999999999999999
Q ss_pred EEEEcCC
Q psy2776 581 VTATNAA 587 (803)
Q Consensus 581 C~a~n~~ 587 (803)
|.+....
T Consensus 89 Ca~~~~~ 95 (113)
T d2bnqd1 89 CAVRPTS 95 (113)
T ss_dssp EEEEESS
T ss_pred EeEecCC
Confidence 9997543
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.85 E-value=1.3e-05 Score=67.94 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=52.0
Q ss_pred cCcCeeeecCCcEEEEEEECc----cCCCeeEEEEcCe--e----c---------c------ceeEEEe----cCeeEEE
Q psy2776 150 PLKDSVAGFQSSVTLECVVSG----VPTPDIKWYKDDS--L----I---------K------GRNITYE----NNVARFT 200 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g----~p~p~i~W~~~~~--~----~---------~------~~~~~~~----~~~~~L~ 200 (803)
.+.++.+..|++++|.|.+.. .....+.|++... . + . ..++.+. .+..+|.
T Consensus 5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 84 (119)
T d1neua_ 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV 84 (119)
T ss_dssp CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence 456678889999999999752 2233689987321 0 0 0 0122221 2346799
Q ss_pred EecCCCCcceEEEEEEEcCCcCe--eeEEEEEEe
Q psy2776 201 VVNCSESSEGRYTCKATNEAGTA--ETSCTLLVQ 232 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~g~~--~~s~~l~V~ 232 (803)
|.+++.+|+|.|.|.+.+..+.. .....|.|.
T Consensus 85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred ECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 99999999999999999865433 334555553
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.85 E-value=3.1e-05 Score=64.43 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=54.2
Q ss_pred cceeEEecCCeEEEEEEEeecC---CCceEEeeCC--eec------------cCCCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASP---APSIVWFRNN--KPL------------LSSPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~~--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
|..+.+.+|++|+|.|...+.. ...+.||+.. ..+ ....++....+...+.|.|.++ +.+|+
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~Ds 85 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGL-QAEDE 85 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSC-CGGGC
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcC-ccccC
Confidence 3457789999999999987643 2358999832 111 1234556666778899999999 89999
Q ss_pred eeEEEEEEccCc
Q psy2776 742 GDYKVVATNELG 753 (803)
Q Consensus 742 G~Y~C~a~N~~G 753 (803)
|.|.|.+.+..+
T Consensus 86 a~YyCa~~~~~~ 97 (112)
T d1lgva1 86 ADYYCSSYDGSS 97 (112)
T ss_dssp EEEEEEEECSSS
T ss_pred EEEEEeeecCCC
Confidence 999998876443
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.84 E-value=2.8e-05 Score=64.59 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=52.6
Q ss_pred eeEEecCCeEEEEEEEeecC--CCceEEeeC--Cee------------ccCCCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKP------------LLSSPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~------------l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
.+.+.+|++++|.|...+.- ...+.||+. +.. -....++....++..+.|.|.++ +.+|+|.|
T Consensus 9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~-~~~Dsa~Y 87 (111)
T d1rzfl1 9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGL-QTGDEADY 87 (111)
T ss_dssp EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSC-CGGGCSEE
T ss_pred ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeee-ccccCcce
Confidence 57889999999999986543 346999973 111 11244566667778899999999 89999999
Q ss_pred EEEEEcc
Q psy2776 745 KVVATNE 751 (803)
Q Consensus 745 ~C~a~N~ 751 (803)
.|.+...
T Consensus 88 yCA~~~~ 94 (111)
T d1rzfl1 88 YCGTWDS 94 (111)
T ss_dssp EEEEEET
T ss_pred EEeecCC
Confidence 9988643
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.84 E-value=1.8e-05 Score=66.24 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=49.9
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eecc-------------ceeEEE----ecCeeEEEEecCCCCcce
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIK-------------GRNITY----ENNVARFTVVNCSESSEG 210 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~-------------~~~~~~----~~~~~~L~i~~v~~~d~G 210 (803)
.+..+.+.+|++++|.|.........+.|||.. ..+. ..++.. .++...|.|.+++++|+|
T Consensus 7 ~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg 86 (115)
T d1lp9e1 7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSA 86 (115)
T ss_dssp CCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCE
T ss_pred CCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCc
Confidence 345577889999999999876666779999843 1110 011111 123467999999999999
Q ss_pred EEEEEEEcCC
Q psy2776 211 RYTCKATNEA 220 (803)
Q Consensus 211 ~Y~C~a~n~~ 220 (803)
.|.|.+....
T Consensus 87 ~YyCa~~~~~ 96 (115)
T d1lp9e1 87 LYYCALFLAS 96 (115)
T ss_dssp EEEEEEEECS
T ss_pred cceEEEEcCC
Confidence 9999876543
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.83 E-value=5.2e-05 Score=62.48 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=52.3
Q ss_pred eeEEecCCeEEEEEEEeecC-CC--ceEEee---CCeec-----------cCCCCeEEEeeCceEEEEEecCCCCCCcee
Q psy2776 681 EKTVKEKGTIRLMAKVKASP-AP--SIVWFR---NNKPL-----------LSSPKKREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p-~~--~v~W~~---~~~~l-----------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
.+.+.+|++++|.|...+.. .. .+.||+ +..+. ....++....++..+.|.|.++ +.+|+|.
T Consensus 9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~-~~~Dsa~ 87 (110)
T d1oaql_ 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGA-QTEDEAI 87 (110)
T ss_dssp EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESC-CGGGCEE
T ss_pred CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCC-CccccEe
Confidence 56789999999999997543 22 388998 22221 1245667677788899999999 8999999
Q ss_pred EEEEEEc
Q psy2776 744 YKVVATN 750 (803)
Q Consensus 744 Y~C~a~N 750 (803)
|.|.+..
T Consensus 88 YyCa~~~ 94 (110)
T d1oaql_ 88 YFCALWY 94 (110)
T ss_dssp EEEEEEE
T ss_pred EEEEccc
Confidence 9998764
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.82 E-value=2.8e-05 Score=64.59 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=52.3
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc------------CCCCeEEEe--eCceEEEEEecCCCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------SSPKKREIF--DGENIILELKEADSETD 740 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~------------~~~~~~~~~--~~~~~~L~i~~v~~~~D 740 (803)
..+..+.+.+|+.++|.|...+.....+.||+. |..+. ...++.... ....+.|.|.++ +.+|
T Consensus 5 Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D 83 (111)
T d1bd2d1 5 QNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPS-QPGD 83 (111)
T ss_dssp CCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSC-CGGG
T ss_pred ccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCC-cccc
Confidence 344567789999999999988777777899983 21110 122333333 355889999999 7999
Q ss_pred ceeEEEEEEc
Q psy2776 741 AGDYKVVATN 750 (803)
Q Consensus 741 ~G~Y~C~a~N 750 (803)
+|.|.|.+..
T Consensus 84 sa~YyCa~~~ 93 (111)
T d1bd2d1 84 SAVYFCAAME 93 (111)
T ss_dssp CEEEEEEEES
T ss_pred cEEEEeeccC
Confidence 9999998863
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.82 E-value=2.3e-05 Score=65.60 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=52.0
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Cee---cc----------CCCCeEEEe--eCceEEEEEecCCCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP---LL----------SSPKKREIF--DGENIILELKEADSE 738 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~---l~----------~~~~~~~~~--~~~~~~L~i~~v~~~ 738 (803)
...+..+.+.+|+.|+|+|.....-...+.||+. |.. |. ...++.... ......|.|.++ +.
T Consensus 4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~ 82 (115)
T d1j8hd1 4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSA-HM 82 (115)
T ss_dssp ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSC-CG
T ss_pred EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccc-cc
Confidence 3445567899999999999987666667999983 111 10 111222222 233567999999 89
Q ss_pred CCceeEEEEEEcc
Q psy2776 739 TDAGDYKVVATNE 751 (803)
Q Consensus 739 ~D~G~Y~C~a~N~ 751 (803)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 83 SDAAEYFCAVSES 95 (115)
T ss_dssp GGCEEEEEEEESS
T ss_pred cCCccceeeecCC
Confidence 9999999999864
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.82 E-value=2.9e-05 Score=62.56 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=65.3
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEee---eeeeEEEEeccccCCeEEEEEEEE
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE---TTSTTYEVTKLTTKHEYMFRVAAV 119 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~c~a~ 119 (803)
|+.+|....+......++.|+|.+|...+...+.+|.+.++..+....|.... .....+.|.+|.+...|.|+++|.
T Consensus 6 P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 85 (95)
T d2ibga1 6 PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSF 85 (95)
T ss_dssp CCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred CCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEE
Confidence 44444444555556789999999888777788999999887655443454433 246789999999999999999999
Q ss_pred ccCccCCCc
Q psy2776 120 NAIGTGPAS 128 (803)
Q Consensus 120 ~~~g~~~~s 128 (803)
|..|.+..|
T Consensus 86 n~~G~s~~S 94 (95)
T d2ibga1 86 SAASASEFS 94 (95)
T ss_dssp CSSCBCCCC
T ss_pred eCCccCCCC
Confidence 999987654
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.80 E-value=4.3e-05 Score=62.91 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=52.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ce---ee-------c--CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GA---EI-------T--DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~---~i-------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++|+|.|.........+.|++. +. .+ . ...++..........|.|.++..+|+|.|.|.
T Consensus 10 ~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa 89 (107)
T d1kcvl1 10 SMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCG 89 (107)
T ss_dssp EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEE
Confidence 57789999999999988766667999973 21 11 1 12455555555678999999999999999998
Q ss_pred EEc
Q psy2776 583 ATN 585 (803)
Q Consensus 583 a~n 585 (803)
+..
T Consensus 90 ~~~ 92 (107)
T d1kcvl1 90 QSY 92 (107)
T ss_dssp ECS
T ss_pred ecC
Confidence 754
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=4.5e-05 Score=61.09 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.+|.+...+.. .|..|++++|+|.........+.|+|++....... ........+.|.+++.+|+|.|+|......
T Consensus 4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~-~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~ 79 (96)
T d1ucta2 4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH-QSGEHPANFSLGPVDLNVSGIYRCYGWYNR 79 (96)
T ss_dssp CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE-EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE-cCCCcccEEEEeccccccCcEEEEEEEcCC
Confidence 45677776654 68899999999986433444699999986433322 223345679999999999999999887543
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.80 E-value=3.6e-05 Score=63.10 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=51.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.........+.|+|. |+.+. ...++..........|.|.++..+|+|.|.|.
T Consensus 10 s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa 89 (107)
T d1c5cl1 10 SLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCL 89 (107)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred EEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEe
Confidence 56788999999999988776677899973 32210 11344444444567999999999999999998
Q ss_pred EEc
Q psy2776 583 ATN 585 (803)
Q Consensus 583 a~n 585 (803)
+.+
T Consensus 90 ~~~ 92 (107)
T d1c5cl1 90 QYA 92 (107)
T ss_dssp ECS
T ss_pred cCc
Confidence 754
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.80 E-value=2.8e-05 Score=64.03 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=52.9
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCC--ee---c---------cCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KP---L---------LSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~---l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+.+.+|++|+|.|.........+.||+.. .. | ....++....++....|.|.++ +.+|+|.|.|
T Consensus 9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~DsavYyC 87 (109)
T d1w72l1 9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRV-EAGDEADYYC 87 (109)
T ss_dssp EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSC-CGGGCEEEEE
T ss_pred eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeee-ccCCCEEEEE
Confidence 467889999999999765555679999732 11 1 1234555666778899999999 8999999999
Q ss_pred EEEcc
Q psy2776 747 VATNE 751 (803)
Q Consensus 747 ~a~N~ 751 (803)
.+...
T Consensus 88 A~~~~ 92 (109)
T d1w72l1 88 QVWDS 92 (109)
T ss_dssp EEEET
T ss_pred EecCC
Confidence 88754
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.80 E-value=5.6e-05 Score=63.00 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=49.9
Q ss_pred eccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcC--ee---c-----------cceeEEEe----cCeeEEEEecCCC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDD--SL---I-----------KGRNITYE----NNVARFTVVNCSE 206 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~--~~---~-----------~~~~~~~~----~~~~~L~i~~v~~ 206 (803)
+..|..+.+.+|++++|.|...+. ....+.||+.. .. + ...++... .....|.|.++++
T Consensus 3 tqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 82 (114)
T d3bp5a1 3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR 82 (114)
T ss_dssp EEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred eECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence 334667788999999999998643 33468899832 11 1 01122221 1346799999999
Q ss_pred CcceEEEEEEEcCC
Q psy2776 207 SSEGRYTCKATNEA 220 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~ 220 (803)
+|+|.|.|.+....
T Consensus 83 ~Dsg~YyCa~~~~~ 96 (114)
T d3bp5a1 83 NDSGIYLCGAISLH 96 (114)
T ss_dssp GGCEEEEEEEECSS
T ss_pred CCCeEEEEEEEeCC
Confidence 99999999887544
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=2.9e-05 Score=64.81 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=50.4
Q ss_pred eeccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCe--e---c------c----------cee--EEEecCeeEEEEe
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDS--L---I------K----------GRN--ITYENNVARFTVV 202 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~--~---~------~----------~~~--~~~~~~~~~L~i~ 202 (803)
+...|....+.+|++++|.|.+.+. ....+.|++... . + . ..+ ....++...|+|.
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~ 82 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS 82 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence 3445677788899999999998653 344689998331 0 0 0 011 2233445789999
Q ss_pred cCCCCcceEEEEEEEc
Q psy2776 203 NCSESSEGRYTCKATN 218 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n 218 (803)
+++.+|+|.|.|.+..
T Consensus 83 ~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 83 DFRRENEGYYFCSALS 98 (114)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred cCCCCCCEEEeEeEcC
Confidence 9999999999998764
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.79 E-value=5.8e-05 Score=63.37 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=55.3
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc-----------------CCCCeEEEe-eCceEEEEEec
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL-----------------SSPKKREIF-DGENIILELKE 734 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~-----------------~~~~~~~~~-~~~~~~L~i~~ 734 (803)
+...|....+.+|++|+|+|...+.....+.||+. |+.+. ...++.... .+..+.|.|.+
T Consensus 4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~ 83 (118)
T d2ij0c1 4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS 83 (118)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence 44556667899999999999987776678999983 22110 123444443 34467899999
Q ss_pred CCCCCCceeEEEEEEccC
Q psy2776 735 ADSETDAGDYKVVATNEL 752 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~ 752 (803)
+ +.+|+|.|.|.+.-..
T Consensus 84 ~-~~~Dsa~YyCa~~~~~ 100 (118)
T d2ij0c1 84 A-HPEDSGFYVCSALAGS 100 (118)
T ss_dssp C-CGGGCEEEEEEEECSS
T ss_pred c-ccccCceEEEEEecCC
Confidence 9 7999999999986543
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.79 E-value=4.8e-05 Score=62.38 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=52.3
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCC--e---ee-------c--CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNG--A---EI-------T--DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~---~i-------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
....+.+|++++|.|...+.-...+.|++.. + .| . ...++..........|.|.+++.+|+|.|.|
T Consensus 8 ~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC 87 (106)
T d1op3k1 8 STLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHC 87 (106)
T ss_dssp SEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEee
Confidence 3577899999999999876666678998742 1 11 1 1135555555667899999999999999999
Q ss_pred EEEc
Q psy2776 582 TATN 585 (803)
Q Consensus 582 ~a~n 585 (803)
.+..
T Consensus 88 a~~~ 91 (106)
T d1op3k1 88 QHYA 91 (106)
T ss_dssp EEEC
T ss_pred eeCC
Confidence 8764
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.78 E-value=2.9e-05 Score=63.47 Aligned_cols=66 Identities=14% Similarity=0.312 Sum_probs=47.8
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc---------------ceeEEEecCeeEEEEecCCCCcceEEEEE
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK---------------GRNITYENNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~---------------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
.+.+.+|++++|.|...+.....+.||+... ... ............|.|.+++++|+|.|.|.
T Consensus 7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA 86 (103)
T d8faba1 7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ 86 (103)
T ss_dssp EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence 4667899999999998765555799998331 110 01233345568899999999999999997
Q ss_pred EEc
Q psy2776 216 ATN 218 (803)
Q Consensus 216 a~n 218 (803)
+..
T Consensus 87 ~~~ 89 (103)
T d8faba1 87 AWD 89 (103)
T ss_dssp EEE
T ss_pred ecC
Confidence 654
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=6.2e-05 Score=59.81 Aligned_cols=86 Identities=7% Similarity=0.173 Sum_probs=57.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc-
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN- 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N- 750 (803)
+|.+...+ ...|..|++|+|.|... .+...+.|+|+|..- .......+..+.+.|.++ +..|+|.|+|....
T Consensus 4 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~----~~~~~~~~~~a~F~i~~v-~~~~~G~Y~C~~~~~ 76 (93)
T d1olla2 4 TPTLSVHP-GPEVISGEKVTFYCRLD-TATSMFLLLKEGRSS----HVQRGYGKVQAEFPLGPV-TTAHRGTYRCFGSYN 76 (93)
T ss_dssp CCEEEEES-CSEEETTCEEEEEEECS-SSCSEEEEEEESSSC----EEEEEECSSEEEEEEEEC-CGGGCEEEEEECEEE
T ss_pred CCEEEEeC-CCcccCCCcEEEEECCC-CCCCEEEEEECCCcc----ceeecCCCceeEEEeccc-ChhcCceEEEEeECC
Confidence 45554444 45688999999999874 466789999987532 122233356788999999 78999999997442
Q ss_pred cCc--ceeeeEEEEEE
Q psy2776 751 ELG--SATHGARVTVD 764 (803)
Q Consensus 751 ~~G--~~~~~~~l~V~ 764 (803)
... ..+..+.|.|.
T Consensus 77 ~~~wS~~SdpLeL~Vt 92 (93)
T d1olla2 77 NHAWSFPSEPVKLLVT 92 (93)
T ss_dssp TTEECCCCCCEEEEEE
T ss_pred CCCcCCCCCCEEEEee
Confidence 221 22455555553
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=1.2e-05 Score=66.26 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=49.5
Q ss_pred eeEEecCCeEEEEEEEeecCC----CceEEeeCCeecc------------CCCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPA----PSIVWFRNNKPLL------------SSPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~----~~v~W~~~~~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
.+++..|++++|.|....... ..+.|.+++..+. ...+..... .+..+|.|.++ +.+|+|.|
T Consensus 3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v-~~~D~G~Y 80 (105)
T d1dr9a1 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILAL-RPSDEGTY 80 (105)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSC-CGGGCEEE
T ss_pred EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcC-ChHHCeEE
Confidence 356788999999998754222 2478888776542 112233222 23468999999 89999999
Q ss_pred EEEEEccCcce
Q psy2776 745 KVVATNELGSA 755 (803)
Q Consensus 745 ~C~a~N~~G~~ 755 (803)
.|.+.+..+..
T Consensus 81 ~C~V~~~~~~~ 91 (105)
T d1dr9a1 81 ECVVLKYEKDA 91 (105)
T ss_dssp EEEEEECCTTS
T ss_pred EEEEEeCCCCC
Confidence 99998754443
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=8.9e-05 Score=61.16 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=53.5
Q ss_pred eeEEecCCeEEEEEEEeecC--CCceEEeeCC--ee---c---------cCCCCeEEEe--eCceEEEEEecCCCCCCce
Q psy2776 681 EKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KP---L---------LSSPKKREIF--DGENIILELKEADSETDAG 742 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~--~~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~~D~G 742 (803)
.+.+.+|+.++|.|...... ...+.|+|.. .. | ....++.+.. ....+.|.|.++ +.+|+|
T Consensus 5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l-~~~DsG 83 (108)
T d1hkfa_ 5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDL-REEDSG 83 (108)
T ss_dssp EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSC-CGGGCE
T ss_pred EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhh-CCCCCE
Confidence 46778999999999875432 2356798732 11 1 1223444443 356789999999 899999
Q ss_pred eEEEEEEccCcc-eeeeEEEEEE
Q psy2776 743 DYKVVATNELGS-ATHGARVTVD 764 (803)
Q Consensus 743 ~Y~C~a~N~~G~-~~~~~~l~V~ 764 (803)
.|.|.+...... ......+.|.
T Consensus 84 ~Y~C~v~~~~~~~~~~~~~~~l~ 106 (108)
T d1hkfa_ 84 HYWCRIYRPSDNSVSKSVRFYLV 106 (108)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEE
T ss_pred EEEEEEecCCCCcEEEeeEEEEE
Confidence 999988754332 2344444443
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.77 E-value=3.8e-05 Score=63.70 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=52.8
Q ss_pred eccceeEEecCCeEEEEEEEeecC----CCceEEeeC--Ceec------------cCCCCeEEEeeCceEEEEEecCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASP----APSIVWFRN--NKPL------------LSSPKKREIFDGENIILELKEADSE 738 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~ 738 (803)
..|..+.+.+|+.|+|.|...... ...+.||+. |+.+ ....++....++..+.|.|.++ +.
T Consensus 6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~ 84 (111)
T d1j05a_ 6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV-EA 84 (111)
T ss_dssp EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSC-CG
T ss_pred ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccc-cc
Confidence 445567789999999999875321 224999983 2211 1233555555677899999999 89
Q ss_pred CCceeEEEEEEcc
Q psy2776 739 TDAGDYKVVATNE 751 (803)
Q Consensus 739 ~D~G~Y~C~a~N~ 751 (803)
+|+|.|.|.+.+.
T Consensus 85 ~Dsa~YyCa~~~~ 97 (111)
T d1j05a_ 85 DDVATYYCQQTNE 97 (111)
T ss_dssp GGCEEEEEEECSS
T ss_pred ccCccEEEeecCC
Confidence 9999999987654
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.76 E-value=4.4e-05 Score=62.67 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=47.1
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcC--ee---c-c-----------ceeEEEecCeeEEEEecCCCCcceEEEEE
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SL---I-K-----------GRNITYENNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~---~-~-----------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
.+.+.+|++++|.|...+.....+.||+.. .. + . .......+....|.|.+++++|+|.|.|.
T Consensus 9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa 88 (106)
T d1lk3l1 9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ 88 (106)
T ss_dssp EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence 467789999999999986555679999742 11 1 0 11222344567899999999999999996
Q ss_pred EE
Q psy2776 216 AT 217 (803)
Q Consensus 216 a~ 217 (803)
+.
T Consensus 89 ~~ 90 (106)
T d1lk3l1 89 QS 90 (106)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.76 E-value=4.4e-05 Score=62.72 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=48.9
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeecc-----------------ceeEEEecCeeEEEEecCCCCcceEE
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-----------------GRNITYENNVARFTVVNCSESSEGRY 212 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~-----------------~~~~~~~~~~~~L~i~~v~~~d~G~Y 212 (803)
.|..+.+.+|++++|.|...+.....+.||+....-. .......+....|+|.+++++|+|.|
T Consensus 7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y 86 (108)
T d1jhll_ 7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY 86 (108)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEE
Confidence 3556778899999999998765555799998331100 01122334557899999999999999
Q ss_pred EEEEEc
Q psy2776 213 TCKATN 218 (803)
Q Consensus 213 ~C~a~n 218 (803)
.|.+.+
T Consensus 87 yCA~~~ 92 (108)
T d1jhll_ 87 ICQQHN 92 (108)
T ss_dssp EEEECS
T ss_pred EEeeCC
Confidence 996554
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.75 E-value=3.9e-05 Score=63.25 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=49.3
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--ee---c-c-----------ceeEEEecCeeEEEEecCCCCcceEE
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SL---I-K-----------GRNITYENNVARFTVVNCSESSEGRY 212 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~---~-~-----------~~~~~~~~~~~~L~i~~v~~~d~G~Y 212 (803)
.|..+.+.+|++++|.|.........+.||+.. .. + . .......+....|.|.+++++|+|.|
T Consensus 7 sP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y 86 (109)
T d1mqkl_ 7 TPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY 86 (109)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred cCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE
Confidence 355677889999999999876555569999832 11 1 0 01122344567899999999999999
Q ss_pred EEEEEc
Q psy2776 213 TCKATN 218 (803)
Q Consensus 213 ~C~a~n 218 (803)
.|.+..
T Consensus 87 yCA~~~ 92 (109)
T d1mqkl_ 87 YCQHHY 92 (109)
T ss_dssp EEEECS
T ss_pred EEeeeC
Confidence 997653
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.75 E-value=6.6e-05 Score=62.31 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=53.7
Q ss_pred EeccceeEEecCCeEEEEEEEeecC-----CCceEEeeC--Cee------------ccCCCCeEEEeeCceEEEEEecCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASP-----APSIVWFRN--NKP------------LLSSPKKREIFDGENIILELKEAD 736 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p-----~~~v~W~~~--~~~------------l~~~~~~~~~~~~~~~~L~i~~v~ 736 (803)
...|..+.+.+|++|+|.|...+.. ...+.||+. |.. -....++....++..+.|.|.++
T Consensus 6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~- 84 (113)
T d1n4xl_ 6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV- 84 (113)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC-
T ss_pred eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC-
Confidence 3455667899999999999986532 246899983 211 11234555555677889999999
Q ss_pred CCCCceeEEEEEEcc
Q psy2776 737 SETDAGDYKVVATNE 751 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~ 751 (803)
+.+|+|.|.|.+.+.
T Consensus 85 ~~~DsavYyCa~~~~ 99 (113)
T d1n4xl_ 85 EAEDLGIYYCFQGSH 99 (113)
T ss_dssp CGGGCEEEEEEECSS
T ss_pred CcccCEEEEEEECCC
Confidence 799999999966543
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=4.4e-05 Score=61.16 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=53.1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.+...+ ...|..|++|+|.|.........|.|+|+|..... . ....+....+.|.++ +.+|+|+|+|.-...
T Consensus 5 kP~Lsa~P-~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~--~--~~~~~~~a~F~l~~v-~~~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 5 KPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP--Q--HQSGEHPANFSLGPV-DLNVSGIYRCYGWYN 78 (96)
T ss_dssp CCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC--S--EEECSSSEEEECCSC-CGGGCEEEEEEEECT
T ss_pred CCEEEEeC-CCccCCCCeEEEEEeCCCCCceEEEEEECCcccce--E--EcCCCcccEEEEecc-ccccCcEEEEEEEcC
Confidence 55555544 45789999999999864345567999999864211 1 122345678999999 789999999988754
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.74 E-value=7e-05 Score=62.43 Aligned_cols=86 Identities=17% Similarity=0.338 Sum_probs=55.3
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCC--e-e--c---------cCCCCeEEEe--eCceEEEEEecCCCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--K-P--L---------LSSPKKREIF--DGENIILELKEADSETD 740 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~-~--l---------~~~~~~~~~~--~~~~~~L~i~~v~~~~D 740 (803)
..|..+.+.+|++++|.|...+. ...+.||+.. . + + ....++.... ......|.|.++ +.+|
T Consensus 5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D 82 (115)
T d1ogad1 5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAA-QPGD 82 (115)
T ss_dssp EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSC-CGGG
T ss_pred eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCC-Cccc
Confidence 34556788999999999998754 3478999831 1 1 0 0112222222 345788999999 8999
Q ss_pred ceeEEEEEEccCcce--eeeEEEEEE
Q psy2776 741 AGDYKVVATNELGSA--THGARVTVD 764 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~--~~~~~l~V~ 764 (803)
+|.|.|.+....+.. -.-.+|+|.
T Consensus 83 sa~YyCa~~~~~~~~~FG~GT~LtV~ 108 (115)
T d1ogad1 83 TGLYLCAGAGSQGNLIFGKGTKLSVK 108 (115)
T ss_dssp CEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred eeeEcccccCCCCCcEECCCEEEEEe
Confidence 999999887543321 122346664
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.74 E-value=2.8e-05 Score=64.02 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=49.5
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec---------------cceeEEEecCeeEEEEecCCCCcceE
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI---------------KGRNITYENNVARFTVVNCSESSEGR 211 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~---------------~~~~~~~~~~~~~L~i~~v~~~d~G~ 211 (803)
..|..+.+.+|++++|.|.........+.||+... .+ ........++...|.|.+++++|+|.
T Consensus 6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~ 85 (107)
T d3cx5k1 6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIAT 85 (107)
T ss_dssp EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSE
T ss_pred CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCc
Confidence 34566778899999999998765555699997431 11 00122334456899999999999999
Q ss_pred EEEEEE
Q psy2776 212 YTCKAT 217 (803)
Q Consensus 212 Y~C~a~ 217 (803)
|.|.+.
T Consensus 86 YyCa~~ 91 (107)
T d3cx5k1 86 YFCQHH 91 (107)
T ss_dssp EEEEEC
T ss_pred EEeeeC
Confidence 999653
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.73 E-value=5.8e-05 Score=61.94 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=51.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE---IT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.....-...+.|+|. |+. |. ...++..........|.|.++..+|++.|.|.
T Consensus 10 ~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa 89 (107)
T d1mexl1 10 FMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQ 89 (107)
T ss_dssp EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred eEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEe
Confidence 57789999999999987665567899963 211 10 12455555555678999999999999999998
Q ss_pred EEc
Q psy2776 583 ATN 585 (803)
Q Consensus 583 a~n 585 (803)
+..
T Consensus 90 ~~~ 92 (107)
T d1mexl1 90 QYN 92 (107)
T ss_dssp ECS
T ss_pred ECC
Confidence 654
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.72 E-value=4.5e-05 Score=63.84 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=52.1
Q ss_pred eccceeEEecCCeEEEEEEEeec-CCCceEEeeCC---eecc------------CCCCeEEEe--eCceEEEEEecCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN---KPLL------------SSPKKREIF--DGENIILELKEADSE 738 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~---~~l~------------~~~~~~~~~--~~~~~~L~i~~v~~~ 738 (803)
..+..+.+.+|++|+|.|..... ....+.||+.. .+.. ...++.... ......|.|.++ +.
T Consensus 4 Q~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~ 82 (115)
T d1fo0a_ 4 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITAT-QI 82 (115)
T ss_dssp CCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSC-CG
T ss_pred ccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCC-Cc
Confidence 44556789999999999987543 44468899832 1110 112344433 345688999999 89
Q ss_pred CCceeEEEEEEccCc
Q psy2776 739 TDAGDYKVVATNELG 753 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G 753 (803)
+|+|.|.|.+....+
T Consensus 83 ~Dsa~YyCa~~~~~~ 97 (115)
T d1fo0a_ 83 EDSAVYFCAMRGDYG 97 (115)
T ss_dssp GGCEEEEEEEECCCT
T ss_pred cccccccceeecCCC
Confidence 999999999875543
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.72 E-value=1.3e-05 Score=67.19 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=49.9
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Cee---cc---CCC---------CeEEEeeCceEEEEEecCCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKP---LL---SSP---------KKREIFDGENIILELKEADSET 739 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~---l~---~~~---------~~~~~~~~~~~~L~i~~v~~~~ 739 (803)
..+..+.+.+|++|+|.|.........+.||+. |.. |. ... +......+..+.|.|.++ +.+
T Consensus 5 Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~ 83 (115)
T d1i9ea_ 5 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASV-HWS 83 (115)
T ss_dssp CCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSC-CGG
T ss_pred cCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccc-ccc
Confidence 344457889999999999988766778899982 211 10 000 111112334578999999 799
Q ss_pred CceeEEEEEEc
Q psy2776 740 DAGDYKVVATN 750 (803)
Q Consensus 740 D~G~Y~C~a~N 750 (803)
|+|.|.|.+..
T Consensus 84 Dsg~YyCa~~~ 94 (115)
T d1i9ea_ 84 DSAVYFCAVSG 94 (115)
T ss_dssp GCEEEEEEEEE
T ss_pred ccceecccccC
Confidence 99999998763
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00012 Score=60.36 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=46.4
Q ss_pred CeeeecCCcEEEEEEECcc--CCCeeEEEEcCe--e---c----------cceeEEE----ecCeeEEEEecCCCCcceE
Q psy2776 153 DSVAGFQSSVTLECVVSGV--PTPDIKWYKDDS--L---I----------KGRNITY----ENNVARFTVVNCSESSEGR 211 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~~~--~---~----------~~~~~~~----~~~~~~L~i~~v~~~d~G~ 211 (803)
.+.+.+|++++|.|..... ....+.|+|... . + ...+... ..+..+|.|.+++++|+|.
T Consensus 5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~ 84 (108)
T d1hkfa_ 5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH 84 (108)
T ss_dssp EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence 3567799999999997632 223578987332 1 0 0011111 2356789999999999999
Q ss_pred EEEEEEcCCc
Q psy2776 212 YTCKATNEAG 221 (803)
Q Consensus 212 Y~C~a~n~~g 221 (803)
|.|.+.....
T Consensus 85 Y~C~v~~~~~ 94 (108)
T d1hkfa_ 85 YWCRIYRPSD 94 (108)
T ss_dssp EEEEEECTTT
T ss_pred EEEEEecCCC
Confidence 9999885544
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.72 E-value=9e-05 Score=61.29 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=51.8
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--C-ee--cc------------CCCCe-EEEeeCceEEEEEecCC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--N-KP--LL------------SSPKK-REIFDGENIILELKEAD 736 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~-~~--l~------------~~~~~-~~~~~~~~~~L~i~~v~ 736 (803)
+...|....+.+|++++|+|...+ ....+.||+. | .+ |. ...++ ........+.|.|.++
T Consensus 4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~- 81 (110)
T d2aq2a1 4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA- 81 (110)
T ss_dssp EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC-
T ss_pred EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC-
Confidence 445566778899999999998764 3557999983 2 11 00 11122 2223456788999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+..
T Consensus 82 ~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 82 TPSQTSVYFCASGG 95 (110)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred CHhhCEEEEEeeCC
Confidence 79999999998764
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.71 E-value=9.2e-05 Score=61.87 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=51.2
Q ss_pred eccCcCeeeecCCcEEEEEEECc-cCCCeeEEEEc--Ceecc----------------ceeEEE----ecCeeEEEEecC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKD--DSLIK----------------GRNITY----ENNVARFTVVNC 204 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~--~~~~~----------------~~~~~~----~~~~~~L~i~~v 204 (803)
+..+..+.+.+|++++|.|...+ .....+.||+. +..+. ..++.. .....+|+|.++
T Consensus 4 tQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (116)
T d1tvda_ 4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV 83 (116)
T ss_dssp ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred EccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCc
Confidence 34456678889999999998754 34557999972 22110 012211 123468999999
Q ss_pred CCCcceEEEEEEEcCCcCe
Q psy2776 205 SESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~ 223 (803)
+.+|+|.|.|.+....+..
T Consensus 84 ~~~Dsg~YyCa~~~~~~~~ 102 (116)
T d1tvda_ 84 RTEDSATYYCAFTLPPPTD 102 (116)
T ss_dssp CGGGCEEEEEEEECTTTTC
T ss_pred cccccccceeeEecCCCCc
Confidence 9999999999887655433
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.71 E-value=4.7e-05 Score=63.69 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=50.6
Q ss_pred eccceeEEecCCeEEEEEEEeec-CCCceEEeeC-----Ceecc-----------------CCCCeEEEe--eCceEEEE
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRN-----NKPLL-----------------SSPKKREIF--DGENIILE 731 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~-----~~~l~-----------------~~~~~~~~~--~~~~~~L~ 731 (803)
..|....+.+|++|+|+|.+.+. ....+.||+. ++.+. ...++.... +...+.|.
T Consensus 3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (115)
T d2atpb1 3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS 82 (115)
T ss_dssp EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence 45566789999999999998864 4456899974 22110 122333333 23467899
Q ss_pred EecCCCCCCceeEEEEEE
Q psy2776 732 LKEADSETDAGDYKVVAT 749 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~ 749 (803)
|.++ +.+|+|.|.|.+.
T Consensus 83 I~~~-~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 83 IMNV-KPEDSDFYFCATV 99 (115)
T ss_dssp ECSC-CGGGCEEEEEEEE
T ss_pred eccc-CCCCCcEEEEeEc
Confidence 9999 8999999999875
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.71 E-value=3.5e-05 Score=64.47 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=50.2
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--ee---c---c----------ceeEEEe--cCeeEEEEecCCCC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SL---I---K----------GRNITYE--NNVARFTVVNCSES 207 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~---~---~----------~~~~~~~--~~~~~L~i~~v~~~ 207 (803)
+..+..+.+.+|+.++|.|.........+.||+.. .. + . ....... .....|+|.+++++
T Consensus 4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1j8hd1 4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS 83 (115)
T ss_dssp ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence 33456678889999999999876555679999832 11 1 0 0011111 23457999999999
Q ss_pred cceEEEEEEEcCC
Q psy2776 208 SEGRYTCKATNEA 220 (803)
Q Consensus 208 d~G~Y~C~a~n~~ 220 (803)
|+|.|.|.+....
T Consensus 84 Dsa~YyCa~~~~~ 96 (115)
T d1j8hd1 84 DAAEYFCAVSESP 96 (115)
T ss_dssp GCEEEEEEEESST
T ss_pred CCccceeeecCCC
Confidence 9999999987643
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.70 E-value=7.8e-05 Score=61.79 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=51.0
Q ss_pred ccceeEEecCCeEEEEEEEeecC-----CCceEEeeCC--eec------------cCCCCeEEEeeCceEEEEEecCCCC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASP-----APSIVWFRNN--KPL------------LSSPKKREIFDGENIILELKEADSE 738 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p-----~~~v~W~~~~--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~ 738 (803)
.+..+.+.+|++|+|.|...+.- ...+.||+.. ..+ ....++....++..+.|.|.++ +.
T Consensus 7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~-~~ 85 (112)
T d1mjul1 7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV-EA 85 (112)
T ss_dssp CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC-CG
T ss_pred cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc-cc
Confidence 34567788999999999987642 3368998732 111 1233555556677889999999 79
Q ss_pred CCceeEEEEEE
Q psy2776 739 TDAGDYKVVAT 749 (803)
Q Consensus 739 ~D~G~Y~C~a~ 749 (803)
+|++.|.|...
T Consensus 86 ~DsAvYyCa~~ 96 (112)
T d1mjul1 86 EDVGVYYCLQH 96 (112)
T ss_dssp GGCEEEEEEEC
T ss_pred cCCceEEEEeC
Confidence 99999999543
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.70 E-value=8.5e-05 Score=59.40 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=46.0
Q ss_pred CCeEEEEEEEeecCCCceEEeeCC--ee---c--------cCCCCeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNN--KP---L--------LSSPKKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~--~~---l--------~~~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
|++|+|.|.........+.||+.. .. | ....++.... ....+.|.|.++ +.+|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~-~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDS-QPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSC-CGGGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeecc-ccCcCccceeeEecC
Confidence 789999999887777789999832 11 1 0122343332 244688999999 799999999998754
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.70 E-value=5.3e-05 Score=62.27 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=49.2
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec-----------c----ceeEEEecCeeEEEEecCCCCcceEE
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI-----------K----GRNITYENNVARFTVVNCSESSEGRY 212 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~-----------~----~~~~~~~~~~~~L~i~~v~~~d~G~Y 212 (803)
.|..+.+.+|++++|.|.........+.||+... .. . .......+....|.|.+++++|+|.|
T Consensus 7 ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Y 86 (107)
T d1d5il1 7 SPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIY 86 (107)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred eCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEE
Confidence 3556778899999999998765556689997421 11 0 11123344567899999999999999
Q ss_pred EEEEEc
Q psy2776 213 TCKATN 218 (803)
Q Consensus 213 ~C~a~n 218 (803)
.|.+..
T Consensus 87 yCa~~~ 92 (107)
T d1d5il1 87 YCLQYD 92 (107)
T ss_dssp EEEECS
T ss_pred Eeeecc
Confidence 997543
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.70 E-value=6.1e-05 Score=61.87 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee---e-------c--CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE---I-------T--DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~---i-------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++|+|.|.........+.|+|. |.. | . ...++..........|.|.++..+|+|.|.|.
T Consensus 10 sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa 89 (107)
T d1tjgl1 10 SLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQ 89 (107)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEE
Confidence 57788999999999988655678889873 211 1 1 12345555455678999999999999999997
Q ss_pred EEc
Q psy2776 583 ATN 585 (803)
Q Consensus 583 a~n 585 (803)
+.+
T Consensus 90 ~~~ 92 (107)
T d1tjgl1 90 QLH 92 (107)
T ss_dssp ECS
T ss_pred ECc
Confidence 654
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=3e-05 Score=63.78 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=48.9
Q ss_pred eeeecCCcEEEEEEECccCC----CeeEEEEcCeecc-------------ceeEEEe-cCeeEEEEecCCCCcceEEEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPT----PDIKWYKDDSLIK-------------GRNITYE-NNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~----p~i~W~~~~~~~~-------------~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
+.+..|++++|.|....... ..+.|.+++..+. ..+.... .+..+|.|.+++.+|+|.|.|.
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~ 83 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV 83 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence 45678999999998763221 2478888775431 0122222 2356899999999999999999
Q ss_pred EEcCCcCe
Q psy2776 216 ATNEAGTA 223 (803)
Q Consensus 216 a~n~~g~~ 223 (803)
+.+..+..
T Consensus 84 V~~~~~~~ 91 (105)
T d1dr9a1 84 VLKYEKDA 91 (105)
T ss_dssp EEECCTTS
T ss_pred EEeCCCCC
Confidence 98765443
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.70 E-value=7.7e-05 Score=61.29 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=53.1
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeC--Ce-e--c---------cCCCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK-P--L---------LSSPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~-~--l---------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
|..+.+.+|++|+|.|.........+.||+. |. + | ...+++....++....|.|.++ +.+|+|.|
T Consensus 6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l-~~~Dsa~Y 84 (108)
T d1nfde1 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGA-QPEDEAAY 84 (108)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTC-CGGGCSEE
T ss_pred CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCc-cccCCceE
Confidence 3456788999999999886555557899983 22 1 1 0234567777777889999999 89999999
Q ss_pred EEEEEc
Q psy2776 745 KVVATN 750 (803)
Q Consensus 745 ~C~a~N 750 (803)
.|.+.-
T Consensus 85 yCA~~~ 90 (108)
T d1nfde1 85 YCLSSY 90 (108)
T ss_dssp EEEEEE
T ss_pred EEEeec
Confidence 998763
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=8.7e-05 Score=61.11 Aligned_cols=90 Identities=26% Similarity=0.316 Sum_probs=66.9
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc--eeEEEeeeeeeEEEEeccccCCeEEEEEEEE
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIETTSTTYEVTKLTTKHEYMFRVAAV 119 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~ 119 (803)
..|.+|....+......+++|+|.+|...++.++..|.+.++..+.. ..+.........+.|.+|.+...|.|+++|.
T Consensus 9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~ 88 (107)
T d1x5fa1 9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ 88 (107)
T ss_dssp CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred CCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEE
Confidence 45666666666777889999999998777777888888877654443 1222222236789999999999999999999
Q ss_pred ccCccCCCccee
Q psy2776 120 NAIGTGPASHNT 131 (803)
Q Consensus 120 ~~~g~~~~s~~~ 131 (803)
+..|.+..+...
T Consensus 89 n~~G~g~~S~~i 100 (107)
T d1x5fa1 89 NKHGSGESSAPL 100 (107)
T ss_dssp CSSCEEEECCCE
T ss_pred eCCCCcCCCCCE
Confidence 999987665544
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.68 E-value=0.00018 Score=57.91 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=25.0
Q ss_pred eeccccceeEEEEecCCceeeEEeecCeec
Q psy2776 317 LVPHLGDATFQVELSSPDIQVKWLKKGKEI 346 (803)
Q Consensus 317 ~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l 346 (803)
.+..|++|+|.|....+...+.|+|+|...
T Consensus 16 ~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~ 45 (99)
T d1nkra2 16 TVLAGENVTLSCSSRSSYDMYHLSREGEAH 45 (99)
T ss_dssp EECTTCEEEEEEEESSCCSEEEEEETTCSS
T ss_pred cccCCCeEEEEECCCCCccEEEEEECCCcc
Confidence 556799999999997778889999987544
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.66 E-value=5.5e-05 Score=62.46 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=51.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ce---ee---------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GA---EI---------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~---~i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|...+.....+.|++. |+ .| ....++..........|.|.++..+|+|.|.|.
T Consensus 12 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA 91 (109)
T d1bwwa_ 12 SLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQ 91 (109)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEe
Confidence 56788999999999998766667889873 11 11 012345555555667899999999999999998
Q ss_pred EEc
Q psy2776 583 ATN 585 (803)
Q Consensus 583 a~n 585 (803)
+..
T Consensus 92 ~~~ 94 (109)
T d1bwwa_ 92 QYQ 94 (109)
T ss_dssp ECS
T ss_pred ecC
Confidence 754
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=97.65 E-value=5.2e-05 Score=61.13 Aligned_cols=79 Identities=19% Similarity=0.052 Sum_probs=50.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC---eEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK---KREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~---~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
||.+...+. ..+..|+.++|.|.+.|+ |. ..|.|++||.++..+.. .....++.........+ ..++.+.|+|
T Consensus 3 pP~V~v~p~-~~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v-~~~~~~~ytC 80 (100)
T d1muja1 3 APQATVFPK-SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF-IPSDDDIYDC 80 (100)
T ss_dssp CCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEE-CCCTTCCEEE
T ss_pred CCEEEEEcC-CccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEE-cCCCCCEEEE
Confidence 555554432 245678899999999997 43 58999999988864321 11122333333333344 4567788999
Q ss_pred EEEccC
Q psy2776 747 VATNEL 752 (803)
Q Consensus 747 ~a~N~~ 752 (803)
++.-..
T Consensus 81 ~V~H~s 86 (100)
T d1muja1 81 KVEHWG 86 (100)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 999753
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=6.3e-05 Score=62.39 Aligned_cols=67 Identities=15% Similarity=0.385 Sum_probs=44.0
Q ss_pred eeeecCCcEEEEEEECccCC---CeeE--EEEcCeec-c----------------ceeEEEecCeeEEEEecCCCCcceE
Q psy2776 154 SVAGFQSSVTLECVVSGVPT---PDIK--WYKDDSLI-K----------------GRNITYENNVARFTVVNCSESSEGR 211 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~---p~i~--W~~~~~~~-~----------------~~~~~~~~~~~~L~i~~v~~~d~G~ 211 (803)
+.+..|++++|.|.+...+. ..+. |.++.... . ..+.....+..+|+|.+++.+|+|.
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~ 83 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL 83 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence 45678999999999863222 2234 44433211 0 0123344556789999999999999
Q ss_pred EEEEEEcCC
Q psy2776 212 YTCKATNEA 220 (803)
Q Consensus 212 Y~C~a~n~~ 220 (803)
|.|.+....
T Consensus 84 Y~C~V~~~~ 92 (110)
T d1ncna_ 84 YQCIIHHKK 92 (110)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999997544
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.64 E-value=2.5e-05 Score=65.42 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Cee---cc----c---------eeEE--EecCeeEEEEecCCCC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSL---IK----G---------RNIT--YENNVARFTVVNCSES 207 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~---~~----~---------~~~~--~~~~~~~L~i~~v~~~ 207 (803)
..++..+.+.+|++++|.|.........+.||+. +.. +- . .... ..++...|+|.+++.+
T Consensus 4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1i9ea_ 4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS 83 (115)
T ss_dssp ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence 3344567788999999999987555567899972 221 10 0 0111 1123467999999999
Q ss_pred cceEEEEEEEc
Q psy2776 208 SEGRYTCKATN 218 (803)
Q Consensus 208 d~G~Y~C~a~n 218 (803)
|+|.|.|.+..
T Consensus 84 Dsg~YyCa~~~ 94 (115)
T d1i9ea_ 84 DSAVYFCAVSG 94 (115)
T ss_dssp GCEEEEEEEEE
T ss_pred ccceecccccC
Confidence 99999997663
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.64 E-value=4e-05 Score=64.18 Aligned_cols=67 Identities=10% Similarity=0.278 Sum_probs=46.6
Q ss_pred CcCeeeecCCcEEEEEEECc-cCCCeeEEEEcC-----eec------------------cceeEE--E--ecCeeEEEEe
Q psy2776 151 LKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDD-----SLI------------------KGRNIT--Y--ENNVARFTVV 202 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~-----~~~------------------~~~~~~--~--~~~~~~L~i~ 202 (803)
|....+.+|++++|.|.+.+ .....+.|++.. +.+ ...+.. . ......|+|.
T Consensus 5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 84 (115)
T d2atpb1 5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM 84 (115)
T ss_dssp CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence 55677889999999999876 344568999742 111 000111 1 1235689999
Q ss_pred cCCCCcceEEEEEEE
Q psy2776 203 NCSESSEGRYTCKAT 217 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~ 217 (803)
+++.+|+|.|.|.+.
T Consensus 85 ~~~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 85 NVKPEDSDFYFCATV 99 (115)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred ccCCCCCcEEEEeEc
Confidence 999999999999765
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.63 E-value=0.00013 Score=61.55 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=67.6
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEE----EeecCCCceeEEEeee-eeeEEEEeccccCCeEEEEE
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL----ESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRV 116 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c 116 (803)
.+|.+|..+.+......+++|+|.+|...++..+..|.+ +..+.... .|..+.. ....+.|.+|++...|.|++
T Consensus 14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~-~~~~~~~~~~~~~~v~~L~p~t~Y~frV 92 (120)
T d1wfua_ 14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH-SYGVIYTGYATRHVVEGLEPRTLYKFRL 92 (120)
T ss_dssp CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTC-CEEEEEEESCSEEEEESCCTTCEEEEEE
T ss_pred cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeeccccccc-ceeeeccccccEEeCCCCCCCcEeeEEE
Confidence 466677777766777899999999998877766665544 33333333 5655443 36789999999999999999
Q ss_pred EEEccCccCCCcceeeEE
Q psy2776 117 AAVNAIGTGPASHNTRYV 134 (803)
Q Consensus 117 ~a~~~~g~~~~s~~~~~~ 134 (803)
+|.|..|.+..+......
T Consensus 93 ~A~n~~G~s~~S~~~~~~ 110 (120)
T d1wfua_ 93 KVTSPSGEYEYSPVVSVA 110 (120)
T ss_dssp EEECSSSCEEECCCEEEE
T ss_pred EEEeCCcEeCCCCCEEEE
Confidence 999999987776554433
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00015 Score=60.83 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=67.1
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEE---eeeeeeEEEEeccccCCeEEEEEEE
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK---IETTSTTYEVTKLTTKHEYMFRVAA 118 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~c~a 118 (803)
+.|++|....+......++.|+|.+|...+ ..+.+|.+.++.......|.. .......+.|.+|++...|.|+++|
T Consensus 19 ~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A 97 (117)
T d1wfoa1 19 DVPGPPMGILFPEVRTTSVRLIWQPPAAPN-GIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITA 97 (117)
T ss_dssp CCCCCCCCCEEEEECSSEEEEECCCCSCCC-SCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEE
T ss_pred CCCcCCCCcEEEEecCCEEEEEEECCCCCC-CceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEEE
Confidence 567777777777778999999999987765 478999998765554433322 2334678999999999999999999
Q ss_pred EccCccCCCcc
Q psy2776 119 VNAIGTGPASH 129 (803)
Q Consensus 119 ~~~~g~~~~s~ 129 (803)
.|..|.+..+.
T Consensus 98 ~n~~G~g~~S~ 108 (117)
T d1wfoa1 98 QTRKGWGEAAE 108 (117)
T ss_dssp ECSSCEEEEEE
T ss_pred ECCCcCCCCcC
Confidence 99999766543
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=4.6e-05 Score=63.26 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=49.5
Q ss_pred ceEEeecceeEEEEEEcCcCC---CeeEE--eeCCeee-c---CC--------C--cEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR---PEISW--MKNGAEI-T---DS--------K--ACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~---~~v~W--~~~g~~i-~---~~--------~--~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
.+.+..|++++|.|.+...+. ..+.| .+++..+ . .+ . +.+.....+..+|.|.+++.+|+|
T Consensus 3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G 82 (110)
T d1ncna_ 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG 82 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence 366788999999999864332 22344 3432211 0 00 0 111122234568999999999999
Q ss_pred EEEEEEEcC--CCC---eEEEEEEEEe
Q psy2776 578 TYTVTATNA--AGS---TSLDLSLQVL 599 (803)
Q Consensus 578 ~Y~C~a~n~--~g~---~s~s~~l~V~ 599 (803)
.|.|.+... .|. ....+.|.|.
T Consensus 83 ~Y~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 83 LYQCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred EEEEEEEecCCCceEEEEcceEEEEEE
Confidence 999999643 333 2445566653
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.62 E-value=0.00013 Score=60.35 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=49.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEe--cCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFI--DEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~--~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|++++|.|.........+.|++. |+... ...++.... ......|.|.++..+|+|.|.
T Consensus 9 s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 88 (111)
T d1bd2d1 9 SLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYF 88 (111)
T ss_dssp EEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEE
Confidence 56789999999999987766667889873 21110 112333322 234689999999999999999
Q ss_pred EEEEc
Q psy2776 581 VTATN 585 (803)
Q Consensus 581 C~a~n 585 (803)
|.+..
T Consensus 89 Ca~~~ 93 (111)
T d1bd2d1 89 CAAME 93 (111)
T ss_dssp EEEES
T ss_pred eeccC
Confidence 98764
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.62 E-value=6.3e-05 Score=62.37 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=47.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEE--ecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIF--IDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+.++|+|.........+.|++. |.... ...++... .......|.|.++..+|+|.|.
T Consensus 8 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (110)
T d1u3ha1 8 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF 87 (110)
T ss_dssp SEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEE
T ss_pred EEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEe
Confidence 46788999999999987655556889974 21110 01122222 2234578999999999999999
Q ss_pred EEEEc
Q psy2776 581 VTATN 585 (803)
Q Consensus 581 C~a~n 585 (803)
|.+..
T Consensus 88 Ca~~~ 92 (110)
T d1u3ha1 88 CAASA 92 (110)
T ss_dssp ECCEE
T ss_pred eeecC
Confidence 98763
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.61 E-value=5.7e-05 Score=62.65 Aligned_cols=72 Identities=8% Similarity=0.165 Sum_probs=51.4
Q ss_pred cceeEEecCCeEEEEEEEeecCC--CceEEeeC--Ceecc------------CCCCeEEEe--eCceEEEEEecCCCCCC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPA--PSIVWFRN--NKPLL------------SSPKKREIF--DGENIILELKEADSETD 740 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--~~~l~------------~~~~~~~~~--~~~~~~L~i~~v~~~~D 740 (803)
|..+.+.+|++++|.|...+... ..+.|++. +..+. ..+++.... ....+.|.|.++ +.+|
T Consensus 7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l-~~~D 85 (111)
T d1cd0a_ 7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGL-KTED 85 (111)
T ss_dssp CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSC-CGGG
T ss_pred CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccC-Cccc
Confidence 44578999999999999876532 35899984 22111 223444443 356889999999 8999
Q ss_pred ceeEEEEEEcc
Q psy2776 741 AGDYKVVATNE 751 (803)
Q Consensus 741 ~G~Y~C~a~N~ 751 (803)
+|.|.|.+.+.
T Consensus 86 sa~YyCA~~~~ 96 (111)
T d1cd0a_ 86 EADYYCQSYDA 96 (111)
T ss_dssp CEEEEEEEEET
T ss_pred CcEEEEeeccC
Confidence 99999987653
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.0002 Score=57.17 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=47.8
Q ss_pred ecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 522 VKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 522 ~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
.++.++|.|.+.| +|.+.|.|+++|..+............++ +.|.| ...+...|+|.+.+..-.....
T Consensus 15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~~~~~ 89 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQT 89 (95)
T ss_dssp STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCEEEE
T ss_pred CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCCCcEE
Confidence 4678899999987 58899999999998876533222222222 34444 3456779999999986655544
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.61 E-value=0.00013 Score=59.91 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=46.4
Q ss_pred CeeeecCCcEEEEEEECccCC---CeeEEEEc--Ceec---------------cceeEEEecCeeEEEEecCCCCcceEE
Q psy2776 153 DSVAGFQSSVTLECVVSGVPT---PDIKWYKD--DSLI---------------KGRNITYENNVARFTVVNCSESSEGRY 212 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~---p~i~W~~~--~~~~---------------~~~~~~~~~~~~~L~i~~v~~~d~G~Y 212 (803)
.+.+.+|++++|.|...+... ..+.||+. +..+ ........+....|.|.+++.+|+|.|
T Consensus 9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y 88 (110)
T d1oaql_ 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY 88 (110)
T ss_dssp EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence 466789999999999974332 23889972 2211 011233445678899999999999999
Q ss_pred EEEEEc
Q psy2776 213 TCKATN 218 (803)
Q Consensus 213 ~C~a~n 218 (803)
.|.+..
T Consensus 89 yCa~~~ 94 (110)
T d1oaql_ 89 FCALWY 94 (110)
T ss_dssp EEEEEE
T ss_pred EEEccc
Confidence 998654
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.61 E-value=7.5e-05 Score=62.11 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=51.1
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC---eecc-----C----CCCeEEE---eeCceEEEEEecCCCCC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN---KPLL-----S----SPKKREI---FDGENIILELKEADSET 739 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~---~~l~-----~----~~~~~~~---~~~~~~~L~i~~v~~~~ 739 (803)
+...|..+.+.+|++++|.|...+. ...+.||+.. .+.. . ....... .....+.|.|.++ +.+
T Consensus 4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~ 81 (113)
T d1h5ba_ 4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDA-QLE 81 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSC-CGG
T ss_pred eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCC-CHh
Confidence 3445567788999999999998753 4568999832 1110 0 0000000 1234678999999 899
Q ss_pred CceeEEEEEEccCc
Q psy2776 740 DAGDYKVVATNELG 753 (803)
Q Consensus 740 D~G~Y~C~a~N~~G 753 (803)
|+|.|.|.+....|
T Consensus 82 Dsa~YyCa~~~~~~ 95 (113)
T d1h5ba_ 82 DSGTYFCAAEASSG 95 (113)
T ss_dssp GCEEEEEEEECSSS
T ss_pred HCEEEEEEecCCCC
Confidence 99999999876544
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=0.00012 Score=59.15 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=46.7
Q ss_pred eecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 521 SVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
..|+.++|.|.+.|+-+ ..++|+++|..+............++ .......+..++.+.|+|.+.+..-
T Consensus 16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl 87 (99)
T d1lk2b_ 16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSM 87 (99)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCC
Confidence 35788999999999733 47899999998876543333333332 2333344556677899999998743
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.60 E-value=0.00013 Score=60.51 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=50.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---e---------cCCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---I---------TDSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|++++|.|.+.+.. ...+.|++.. .. + ....++...-......|.|.++..+|++.|.
T Consensus 9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy 88 (114)
T d2rhea_ 9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY 88 (114)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence 36778999999999987643 4568899742 11 1 0113555555566789999999999999999
Q ss_pred EEEEc
Q psy2776 581 VTATN 585 (803)
Q Consensus 581 C~a~n 585 (803)
|.+..
T Consensus 89 CA~~~ 93 (114)
T d2rhea_ 89 CAAWN 93 (114)
T ss_dssp EEEEE
T ss_pred EeecC
Confidence 98864
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.60 E-value=0.00011 Score=61.67 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=50.6
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec------------------cceeEEE---ecCeeEEEEecC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI------------------KGRNITY---ENNVARFTVVNC 204 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~------------------~~~~~~~---~~~~~~L~i~~v 204 (803)
...|....+.+|++++|.|...+.....+.|||.. ..+ ...++.. .+....|+|.++
T Consensus 5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~ 84 (118)
T d2ij0c1 5 SQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSA 84 (118)
T ss_dssp EEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSC
T ss_pred EEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccc
Confidence 33455677889999999999876556679999832 211 0111221 123467999999
Q ss_pred CCCcceEEEEEEEcCC
Q psy2776 205 SESSEGRYTCKATNEA 220 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~ 220 (803)
+++|+|.|.|.+....
T Consensus 85 ~~~Dsa~YyCa~~~~~ 100 (118)
T d2ij0c1 85 HPEDSGFYVCSALAGS 100 (118)
T ss_dssp CGGGCEEEEEEEECSS
T ss_pred ccccCceEEEEEecCC
Confidence 9999999999886543
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.60 E-value=0.00012 Score=61.09 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=52.9
Q ss_pred ccCCceeeeccccceeEEEEe--cCCceeeEEeec--Ceecc---------------ccceeEEEEcCceeEEEEeecCC
Q psy2776 310 SKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKK--GKEIK---------------ESARHIITSRGTQRKLVIKRVTQ 370 (803)
Q Consensus 310 ~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~--g~~l~---------------~~~~~~~~~~~~~~~l~i~~~~~ 370 (803)
.+.|....+.+|++|+|.|.. +.....+.|++- |..+. ..........+....|.|.++..
T Consensus 4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 83 (114)
T d2ak4d1 4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV 83 (114)
T ss_dssp ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence 344566677889999999987 344556889982 22111 01123334445567899999999
Q ss_pred CCCccEEEEEeccccce
Q psy2776 371 DDETDIGVLALNVKSVS 387 (803)
Q Consensus 371 ~d~g~y~c~~~~~~~~~ 387 (803)
+|+|.|.|.+....+..
T Consensus 84 ~Dsg~YyCa~~~~~~~~ 100 (114)
T d2ak4d1 84 VDSAVYFCALSGFYNTD 100 (114)
T ss_dssp GGCEEEEEEEECSBTTS
T ss_pred ccCCCceEeCCCCCCCC
Confidence 99999999887655443
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00017 Score=59.12 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=61.6
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
+|..+.+......+++|+|.+|...+ ..+..|.++++.......|..... ....+.|.+|.+...|.|+++|.+..
T Consensus 9 ~P~~p~~~~~~~~~v~l~W~pp~~~~-~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~~ 87 (105)
T d2d9qb2 9 MDPSPEAAPPQAGCLQLSWEPWQPGL-HINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWP 87 (105)
T ss_dssp CCC-------CCSCEEEEEECCGGGT-TSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECS
T ss_pred CCCCCEeecCCCCeEEEEEcCCCCCC-ceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeCC
Confidence 44555666677889999999987655 467789988886655556766543 35679999999999999999999999
Q ss_pred ccCCCcceeeE
Q psy2776 123 GTGPASHNTRY 133 (803)
Q Consensus 123 g~~~~s~~~~~ 133 (803)
|.+..|.-+..
T Consensus 88 g~G~~S~wS~~ 98 (105)
T d2d9qb2 88 LPGHWSDWSPS 98 (105)
T ss_dssp SCCCCCCCCCC
T ss_pred CCCCCcCCCCC
Confidence 98766654433
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=8.9e-05 Score=63.27 Aligned_cols=100 Identities=29% Similarity=0.487 Sum_probs=72.7
Q ss_pred EEEEEecCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc-eeEEEee--eeeeEEEEeccccCCeE
Q psy2776 36 TKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF-MVWNKIE--TTSTTYEVTKLTTKHEY 112 (803)
Q Consensus 36 ~~l~V~~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~g 112 (803)
....|.+.|++|..+.+......++.|+|.+|.. ++..+..|.++++..... ..|.... .....+.+.+|++...|
T Consensus 9 ~~~~v~d~P~~P~~~~v~~~~~~sv~l~W~~p~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 87 (127)
T d1ueya_ 9 TPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNY 87 (127)
T ss_dssp CCCCCCCSCCCCEEEEEECCSSSCEEEEEECCCC-CSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEE
T ss_pred ccccccccCcCCCCcEEEEecCCeEEEEEeCCcc-cccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEE
Confidence 3445667888887777777788999999998765 445778888877754332 2232222 23567899999999999
Q ss_pred EEEEEEEccCccCCCcceeeEEEE
Q psy2776 113 MFRVAAVNAIGTGPASHNTRYVVV 136 (803)
Q Consensus 113 ~y~c~a~~~~g~~~~s~~~~~~~~ 136 (803)
.|+.+|.+..|.+..+..+..+..
T Consensus 88 ~frV~A~n~~G~s~~S~~s~~~~t 111 (127)
T d1ueya_ 88 SFRVMAVNSIGKSLPSEASEQYLT 111 (127)
T ss_dssp CCEEEEEESSCBCCCCSCCCCEEC
T ss_pred EEEEEEEcCCcCcCCcCCcccEEc
Confidence 999999999999887766544443
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.59 E-value=9.3e-05 Score=60.96 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=49.8
Q ss_pred ceEEeecceeEEEEEEcCc-CCCeeEEeeC--Ce---eec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-PRPEISWMKN--GA---EIT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-p~~~v~W~~~--g~---~i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|++++|.|..... ....+.|++. |. .|- ...++..........|.|.++..+|+|.|.|
T Consensus 10 ~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyC 89 (108)
T d2fx7l1 10 TQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYC 89 (108)
T ss_dssp EEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred eEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEee
Confidence 5778999999999998654 2346889874 22 110 1234555555566899999999999999999
Q ss_pred EEEc
Q psy2776 582 TATN 585 (803)
Q Consensus 582 ~a~n 585 (803)
.+.+
T Consensus 90 a~~~ 93 (108)
T d2fx7l1 90 QQYG 93 (108)
T ss_dssp EECS
T ss_pred ecCC
Confidence 8753
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00011 Score=58.39 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=52.6
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
.+|.+.+.|. ..|..|++|+|+|... .+...+.|+|+|....... ........+.|.+|+.+|+|.|+|...
T Consensus 3 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~-~~~~~~a~F~i~~v~~~~~G~Y~C~~~ 74 (93)
T d1olla2 3 DTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQR-GYGKVQAEFPLGPVTTAHRGTYRCFGS 74 (93)
T ss_dssp CCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEE-EECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred CCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccceee-cCCCceeEEEecccChhcCceEEEEeE
Confidence 4577777665 4477899999999975 3455799999876433222 222355789999999999999999643
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.58 E-value=0.00012 Score=58.54 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=45.6
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCC--ee---e---c-----CCCcEEEE--ecCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNG--AE---I---T-----DSKACRIF--IDEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g--~~---i---~-----~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
|++++|.|.........+.|+|.. .. | . ...++... .......|.|.++..+|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence 789999999887777789999732 11 1 1 11234333 2234578999999999999999998754
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.57 E-value=8.8e-05 Score=61.34 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=51.7
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc------------CCCCeEEEe--eCceEEEEEecCCCCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------SSPKKREIF--DGENIILELKEADSET 739 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~------------~~~~~~~~~--~~~~~~L~i~~v~~~~ 739 (803)
...+..+.+.+|++|+|.|.....-...+.||+. |..+. ...++.... ++..+.|.|.++ +.+
T Consensus 4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~-~~~ 82 (110)
T d1ac6a_ 4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASV-QES 82 (110)
T ss_dssp EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEE-CGG
T ss_pred EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCc-CcC
Confidence 3445567899999999999887655567999983 21110 112333322 234678999999 799
Q ss_pred CceeEEEEEEcc
Q psy2776 740 DAGDYKVVATNE 751 (803)
Q Consensus 740 D~G~Y~C~a~N~ 751 (803)
|+|.|.|.+...
T Consensus 83 Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 83 DSAVYYCALSGG 94 (110)
T ss_dssp GCEEEEEEEEET
T ss_pred CCcccceeecCC
Confidence 999999988643
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.56 E-value=7.2e-05 Score=62.12 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=50.1
Q ss_pred cceeEEecCCeEEEEEEEeecCC-CceEEeeC--Ceecc------------CCCCeEEEeeCceEEEEEecCCCCCCcee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPA-PSIVWFRN--NKPLL------------SSPKKREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
|..+.+.+|++|+|.|...+... ..+.||+. |..+. ...++.+..+.....|.|.++ +.+|+|.
T Consensus 5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~Dsa~ 83 (112)
T d1kgcd1 5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRA-TLRDAAV 83 (112)
T ss_dssp CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSC-CGGGCEE
T ss_pred CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeec-cccccee
Confidence 34567889999999999876543 45899993 22111 111233334556788999999 7899999
Q ss_pred EEEEEEcc
Q psy2776 744 YKVVATNE 751 (803)
Q Consensus 744 Y~C~a~N~ 751 (803)
|.|.+.-.
T Consensus 84 YyCa~~~~ 91 (112)
T d1kgcd1 84 YYCILPLA 91 (112)
T ss_dssp EEEECCCC
T ss_pred EeeeEecC
Confidence 99987543
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=97.56 E-value=0.0002 Score=59.17 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=50.2
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeC--C----eeecCCCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKN--G----AEITDSKACRIFID--EETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~--g----~~i~~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
...+.+|++++|.|.+.+. ....+.|++. | ..+..+.++..... .....|.|.++..+|+|.|.|.+...
T Consensus 8 s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~ 87 (112)
T d1sq2n_ 8 SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA 87 (112)
T ss_dssp EEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred EEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence 5677889999999998643 3467899973 1 22333344544433 23568999999999999999988654
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.55 E-value=0.00016 Score=59.91 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=49.9
Q ss_pred cceEEeecceeEEEEEEcCc--CCCeeEEeeC--Ce----eecCCCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 516 KSQRLSVKSQWKVEVKYFGF--PRPEISWMKN--GA----EITDSKACRIFID--EETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~--g~----~i~~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
....+.+|++++|+|.+.+. ....+.|++. |. .+....++....+ .....|+|.++..+|+|.|.|.+..
T Consensus 8 ~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 87 (113)
T d1vesa_ 8 RTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY 87 (113)
T ss_dssp SEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence 35778899999999998753 3356889873 22 2333345544432 3346899999999999999999854
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.55 E-value=0.00019 Score=60.12 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=53.6
Q ss_pred eEeccceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceecc------------CCCCeEEEee--CceEEEEEecCC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPLL------------SSPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l~------------~~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
++..+..+.+.+|++++|.|...+.. ...+.||+. |..+. ..+++....+ .....|.|.++
T Consensus 4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~- 82 (120)
T d1hxma1 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP- 82 (120)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC-
T ss_pred EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc-
Confidence 33445567889999999999998654 345899983 21111 1245555543 45689999999
Q ss_pred CCCCceeEEEEEEcc
Q psy2776 737 SETDAGDYKVVATNE 751 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~ 751 (803)
+.+|+|.|.|.....
T Consensus 83 ~~~Dsa~YyCA~~~~ 97 (120)
T d1hxma1 83 SERDEGSYYCACDTL 97 (120)
T ss_dssp CGGGCEEEEEEEECC
T ss_pred cccCCceeecCcccC
Confidence 799999999987653
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.54 E-value=0.00018 Score=59.41 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=48.5
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec-------c----------ce--eEEEecCeeEEEEecCCC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI-------K----------GR--NITYENNVARFTVVNCSE 206 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~-------~----------~~--~~~~~~~~~~L~i~~v~~ 206 (803)
...|....+.+|++++|.|...+ ....+.|||.. ... . .. ..........|+|.++..
T Consensus 5 ~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 83 (110)
T d2aq2a1 5 TQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP 83 (110)
T ss_dssp EEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred EEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence 34456677889999999999865 34579999832 111 0 00 111233567899999999
Q ss_pred CcceEEEEEEEc
Q psy2776 207 SSEGRYTCKATN 218 (803)
Q Consensus 207 ~d~G~Y~C~a~n 218 (803)
+|+|.|.|.+..
T Consensus 84 ~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 84 SQTSVYFCASGG 95 (110)
T ss_dssp GGCEEEEEEEEE
T ss_pred hhCEEEEEeeCC
Confidence 999999997654
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=8.3e-05 Score=60.64 Aligned_cols=87 Identities=25% Similarity=0.426 Sum_probs=61.7
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
.|.+|....+......++.|+|.+|.. .++.+|.++++.................+.|.+|.+...|.|+++|.|..
T Consensus 10 vP~~P~~~~~~~~~~~si~l~W~~p~~---~~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 86 (102)
T d1x5za1 10 VPGQPLNFKAEPESETSILLSWTPPRS---DTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQ 86 (102)
T ss_dssp CCCCCEEEEEECSSSSEEEEEEECCSC---CCCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECSS
T ss_pred CCcCCCCeEEEEccCCEEEEEEECCCC---CCccceEEEEEeCCCCceEEEEcCCcCEEEECCCCCCCEEEEEEEEEcCC
Confidence 344444444555567899999998853 35788999877655542222222346789999999999999999999999
Q ss_pred ccCCCcceee
Q psy2776 123 GTGPASHNTR 132 (803)
Q Consensus 123 g~~~~s~~~~ 132 (803)
|.+..+....
T Consensus 87 G~g~~S~~v~ 96 (102)
T d1x5za1 87 GLGASTAEIS 96 (102)
T ss_dssp CEEEECCCEE
T ss_pred CEeCCCCCEE
Confidence 9876655443
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00023 Score=56.76 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=48.1
Q ss_pred ecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEee--Cc---eEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 685 KEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFD--GE---NIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 685 ~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~--~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
..++.++|.|.+.| +|.+.|.|++||..+........... +. .+.|.|. ..+...|+|.++...-.....
T Consensus 14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~----~~~~~~~tC~V~h~~l~~~~~ 89 (95)
T d1dr9a2 14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN----MTTNHSFMCLIKYGHLRVNQT 89 (95)
T ss_dssp SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE----TTSCEEEEEEEEETTCCEEEE
T ss_pred CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc----CCccceEEEEEEecCCCCcEE
Confidence 45788999999988 59999999999998865433322221 22 2345554 345678999999876654433
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.53 E-value=0.00013 Score=59.83 Aligned_cols=67 Identities=13% Similarity=0.319 Sum_probs=47.8
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcC--eec---------------cceeEEEecCeeEEEEecCCCCcceEEEEE
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI---------------KGRNITYENNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~---------------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
.+.+.+|++++|.|.........+.||+.. ..+ .............|.|.+++.+|+|.|.|.
T Consensus 9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA 88 (109)
T d1w72l1 9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ 88 (109)
T ss_dssp EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence 366779999999999765444569999743 111 011233345567899999999999999998
Q ss_pred EEcC
Q psy2776 216 ATNE 219 (803)
Q Consensus 216 a~n~ 219 (803)
+...
T Consensus 89 ~~~~ 92 (109)
T d1w72l1 89 VWDS 92 (109)
T ss_dssp EEET
T ss_pred ecCC
Confidence 7643
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00028 Score=56.40 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=66.0
Q ss_pred CCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc-eeEEEeeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF-MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
|.++....+......+++|+|.+|...+ ..+..|.+..+..... ..+.........+.|.+|.+...|.|+++|.|..
T Consensus 1 P~~~~~l~~~~~t~~si~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 79 (95)
T d2djsa1 1 PSTVPIMHQVSATMRSITLSWPQPEQPN-GIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVA 79 (95)
T ss_dssp CCCCSCCEEEEECSSEEEEECCCCSCCS-SCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESS
T ss_pred CCCCCccEEEeecCCEEEEEEEECCCCC-cceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEcCC
Confidence 3444456777788999999999987654 4788998877655443 1233334457789999999999999999999999
Q ss_pred ccCCCcceee
Q psy2776 123 GTGPASHNTR 132 (803)
Q Consensus 123 g~~~~s~~~~ 132 (803)
|.+..+....
T Consensus 80 G~g~~S~~~~ 89 (95)
T d2djsa1 80 GYGKFSGKMC 89 (95)
T ss_dssp CEEEECCCEE
T ss_pred CCCCCCCCEE
Confidence 9877665544
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00013 Score=60.74 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=46.2
Q ss_pred CeeeecCCcEEEEEEECc--cCCCeeEEEEcCe--e---c---c----------ceeEEEe----cCeeEEEEecCCCCc
Q psy2776 153 DSVAGFQSSVTLECVVSG--VPTPDIKWYKDDS--L---I---K----------GRNITYE----NNVARFTVVNCSESS 208 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g--~p~p~i~W~~~~~--~---~---~----------~~~~~~~----~~~~~L~i~~v~~~d 208 (803)
...+.+|++++|.|...+ .....+.|+|... . + . .+++... .+..+|+|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 356779999999999864 3345688998421 1 1 0 0122221 234679999999999
Q ss_pred ceEEEEEEEcCC
Q psy2776 209 EGRYTCKATNEA 220 (803)
Q Consensus 209 ~G~Y~C~a~n~~ 220 (803)
+|.|.|.+....
T Consensus 88 sg~Y~Cav~~~~ 99 (113)
T d1smoa_ 88 SGLYQCVIYQPP 99 (113)
T ss_dssp CEEEEEEECCTT
T ss_pred CceEEEEEECCC
Confidence 999999876543
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=7.5e-05 Score=63.12 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=48.7
Q ss_pred cceeEEecCCeEEEEEEEeec----CC---CceEEeeCCeecc-----------------CCCCeEEEee--CceEEEEE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKAS----PA---PSIVWFRNNKPLL-----------------SSPKKREIFD--GENIILEL 732 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~----p~---~~v~W~~~~~~l~-----------------~~~~~~~~~~--~~~~~L~i 732 (803)
+..+++.+|+.|.|.|..... .. ..+.|++.+..-. ...|+.+..+ ...++|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 456789999999999998521 11 2477988532110 1224444432 34678999
Q ss_pred ecCCCCCCceeEEEEEEcc
Q psy2776 733 KEADSETDAGDYKVVATNE 751 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~ 751 (803)
.++ +.+|+|.|.|.+...
T Consensus 88 ~~v-~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 88 RDA-RMSDAGRYFFRMEKG 105 (121)
T ss_dssp CSC-CGGGCEEEEEEEEET
T ss_pred CCC-ChHHCEEEEEEEEeC
Confidence 999 899999999999753
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00016 Score=58.18 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=50.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
+|.+...+ ...+..|+.++|.|.+.|+ |.. .+.|.+||.++..... .....++.........+ ..+|.+.|+|+
T Consensus 5 ~P~V~v~~-~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v-~~~~~~~ytC~ 82 (100)
T d1k5nb_ 5 TPKIQVYS-RHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEF-TPTEKDEYACR 82 (100)
T ss_dssp CCEEEEEE-SSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE-CCCSSCCEEEE
T ss_pred CCeeEEEc-CCcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEE-CCCCCCEEEEE
Confidence 45544332 2234578999999999998 554 7999999999864322 22223444434444444 45677899999
Q ss_pred EEcc
Q psy2776 748 ATNE 751 (803)
Q Consensus 748 a~N~ 751 (803)
+.-.
T Consensus 83 V~H~ 86 (100)
T d1k5nb_ 83 VNHV 86 (100)
T ss_dssp EECT
T ss_pred EEeC
Confidence 9864
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.51 E-value=0.00011 Score=61.46 Aligned_cols=73 Identities=14% Similarity=0.297 Sum_probs=49.4
Q ss_pred eccCcCeeeecCCcEEEEEEECc-cCCCeeEEEEcC--eec----c------------ceeEEEe--cCeeEEEEecCCC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDD--SLI----K------------GRNITYE--NNVARFTVVNCSE 206 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~--~~~----~------------~~~~~~~--~~~~~L~i~~v~~ 206 (803)
+..+..+.+.+|++++|.|.... .....+.||+.. ..+ . ......+ .+...|.|.++++
T Consensus 3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1fo0a_ 3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI 82 (115)
T ss_dssp ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence 33456677889999999999764 344468899832 111 0 0112222 2457899999999
Q ss_pred CcceEEEEEEEcCC
Q psy2776 207 SSEGRYTCKATNEA 220 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~ 220 (803)
+|+|.|.|.+....
T Consensus 83 ~Dsa~YyCa~~~~~ 96 (115)
T d1fo0a_ 83 EDSAVYFCAMRGDY 96 (115)
T ss_dssp GGCEEEEEEEECCC
T ss_pred cccccccceeecCC
Confidence 99999999876543
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.51 E-value=0.00019 Score=58.57 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=48.5
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---e-------c--CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---I-------T--DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i-------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
....+.+|++++|.|.... ....+.|++.. .. + . ...++..........|.|.++..+|+|.|.|
T Consensus 8 ~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC 86 (104)
T d1yqvl1 8 AIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYC 86 (104)
T ss_dssp SEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEE
Confidence 3577899999999999754 34457899742 10 0 0 1234444444566899999999999999999
Q ss_pred EEEc
Q psy2776 582 TATN 585 (803)
Q Consensus 582 ~a~n 585 (803)
.+..
T Consensus 87 a~~~ 90 (104)
T d1yqvl1 87 QQWG 90 (104)
T ss_dssp EECS
T ss_pred EecC
Confidence 7643
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00027 Score=56.34 Aligned_cols=82 Identities=32% Similarity=0.499 Sum_probs=61.5
Q ss_pred CCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEe--eeeeeEEEEeccccCCeEEEEEEEEcc
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNA 121 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~a~~~ 121 (803)
|++|. ..+......++.|+|.+|...+ ..+.+|.++.+..+.. .|... ......+.|.+|.+...|.|+++|.|.
T Consensus 1 P~~P~-~~~~~~~~~sv~l~W~pP~~~~-g~i~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 77 (94)
T d2dn7a1 1 PGRPT-MMISTTAMNTALLQWHPPKELP-GELLGYRLQYCRADEA-RPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNR 77 (94)
T ss_dssp CCCCE-EEEEECSTTEEEEEEECCSSCS-SCCCEEEEEEEETTCS-SCEEEEEETTCCEEEEECCCTTCEEEEEEEEEET
T ss_pred CCCCc-EeEEEEeCCEEEEEEeCCCCCC-CceEEEEEEEEEcCCC-CcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcC
Confidence 34443 3344456889999999987654 4789999988765554 44443 334778999999999999999999999
Q ss_pred CccCCCc
Q psy2776 122 IGTGPAS 128 (803)
Q Consensus 122 ~g~~~~s 128 (803)
.|.+..+
T Consensus 78 ~G~g~~s 84 (94)
T d2dn7a1 78 AGLGEEF 84 (94)
T ss_dssp TEEEEEE
T ss_pred CcCCCCc
Confidence 9987644
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.49 E-value=0.00029 Score=59.17 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=50.5
Q ss_pred ceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceecc-----------------CCCCeEEEee--CceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPLL-----------------SSPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
..+.+.+|++++|+|.+.|.. ...+.||+. |+.+. ...++.+..+ ...+.|.|.++
T Consensus 9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l- 87 (123)
T d1hxmb1 9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV- 87 (123)
T ss_dssp SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC-
T ss_pred CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc-
Confidence 346778899999999998864 336889983 11100 1345666654 45688999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+..
T Consensus 88 ~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 88 EKQDIATYYCALWE 101 (123)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccccCcEEEEeeeC
Confidence 79999999998754
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.48 E-value=0.00021 Score=58.96 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=49.6
Q ss_pred CceeeeccccceeEEEEec--CCceeeEEeec--Ceecc------------ccceeEEEEcCceeEEEEeecCCCCCccE
Q psy2776 313 PSVTLVPHLGDATFQVELS--SPDIQVKWLKK--GKEIK------------ESARHIITSRGTQRKLVIKRVTQDDETDI 376 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~~--~p~~~i~W~~~--g~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 376 (803)
|....+.+|++++|.|... .....+.|++. |..+. ...++....++....|.|.++..+|+|.|
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 84 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY 84 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence 3456677899999999973 34566899983 32111 12233444455678899999999999999
Q ss_pred EEEEecc
Q psy2776 377 GVLALNV 383 (803)
Q Consensus 377 ~c~~~~~ 383 (803)
.|.+...
T Consensus 85 yCa~~~~ 91 (110)
T d2esvd1 85 YCIVVRS 91 (110)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 9987654
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.47 E-value=0.0002 Score=59.36 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=51.2
Q ss_pred ceEEeecceeEEEEEEcCcCC---CeeEEeeC--Ceee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR---PEISWMKN--GAEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~---~~v~W~~~--g~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y 579 (803)
...+.+|++++|.|...+... ..+.|+|. |+.+ ....++..........|.|.+++.+|+|.|
T Consensus 9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y 88 (112)
T d1lgva1 9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY 88 (112)
T ss_dssp EEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred cEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE
Confidence 467889999999999776432 35889973 2111 111345555555678999999999999999
Q ss_pred EEEEEcCCC
Q psy2776 580 TVTATNAAG 588 (803)
Q Consensus 580 ~C~a~n~~g 588 (803)
.|.+.+..+
T Consensus 89 yCa~~~~~~ 97 (112)
T d1lgva1 89 YCSSYDGSS 97 (112)
T ss_dssp EEEEECSSS
T ss_pred EEeeecCCC
Confidence 998875433
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.47 E-value=0.00023 Score=58.63 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=49.8
Q ss_pred ceEEeecceeEEEEEEcCc-C---CCeeEEeeC--Ceee----c--------CCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-P---RPEISWMKN--GAEI----T--------DSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-p---~~~v~W~~~--g~~i----~--------~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|++|+|.|...+. . ...+.|++. |... . ...++..........|+|.++..+|+|.
T Consensus 10 s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~ 89 (111)
T d2gsia1 10 SLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAAT 89 (111)
T ss_dssp EEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred EEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCce
Confidence 5778999999999987642 1 234789873 2211 0 1245655555567899999999999999
Q ss_pred EEEEEEcC
Q psy2776 579 YTVTATNA 586 (803)
Q Consensus 579 Y~C~a~n~ 586 (803)
|.|.+...
T Consensus 90 YyCa~~~~ 97 (111)
T d2gsia1 90 YYCSHIRE 97 (111)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 99987543
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.47 E-value=0.00028 Score=56.66 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeecccee--EEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
.+|.+...+. ..|..|++|+|+|... .+...+.|+|+|....... .........+.|..+...|+|.|+|.....
T Consensus 5 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~ 81 (99)
T d1nkra2 5 EKPSLSAQPG-PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH 81 (99)
T ss_dssp CCCEEEEESC-SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred CCCEEEEeCC-CcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence 4677777665 4578999999999875 3556799999986443221 223344566788889999999999976644
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00021 Score=58.54 Aligned_cols=87 Identities=24% Similarity=0.397 Sum_probs=66.7
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEE--EeeeeeeEEEEeccccCCeEEEEEEEE
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWN--KIETTSTTYEVTKLTTKHEYMFRVAAV 119 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~a~ 119 (803)
+.|++|..+.+......++.|+|.+|...+ ..+.+|.++++..+....|. ........+.|.+|.+...|.|+++|.
T Consensus 9 ~vP~~p~~l~~~~~~~~sv~l~W~~P~~~n-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 87 (106)
T d1wfna1 9 DVPGPVGHLSFSEILDTSLKVSWQEPGEKN-GILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAM 87 (106)
T ss_dssp CSCCCCSCCEEESCCSSEEEEECCCCTTCC-SCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEE
T ss_pred CCCcCCCCcEEEEecCCEEEEEEECCCCCC-CcEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEEE
Confidence 467777777777778899999999887654 46889999877655432332 333346789999999999999999999
Q ss_pred ccCccCCCcc
Q psy2776 120 NAIGTGPASH 129 (803)
Q Consensus 120 ~~~g~~~~s~ 129 (803)
|..|.+..+.
T Consensus 88 n~~G~g~~s~ 97 (106)
T d1wfna1 88 TSKGQGQVSA 97 (106)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCCcCCcC
Confidence 9999876554
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.46 E-value=0.00012 Score=61.26 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=47.1
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--e---cc------------ceeEEEecCeeEEEEecCCCCcceEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--L---IK------------GRNITYENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~---~~------------~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
|..+.+.+|++++|.|...+.-...+.||+... . +- .......+....|.|.+++++|+|.|.
T Consensus 8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy 87 (119)
T d1f3rb2 8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF 87 (119)
T ss_dssp TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence 445667899999999998754445699998431 1 10 011223445578999999999999999
Q ss_pred EEEE
Q psy2776 214 CKAT 217 (803)
Q Consensus 214 C~a~ 217 (803)
|.+.
T Consensus 88 Ca~~ 91 (119)
T d1f3rb2 88 CYQY 91 (119)
T ss_dssp EEEE
T ss_pred eecc
Confidence 9654
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.46 E-value=0.00014 Score=60.45 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=50.3
Q ss_pred ccCCceeeeccccceeEEEEecCCceeeEEeec--Ceecc-----------ccc-eeE-EEEcCceeEEEEeecCCCCCc
Q psy2776 310 SKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK--GKEIK-----------ESA-RHI-ITSRGTQRKLVIKRVTQDDET 374 (803)
Q Consensus 310 ~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~--g~~l~-----------~~~-~~~-~~~~~~~~~l~i~~~~~~d~g 374 (803)
.+.|....+.+|++++|.|........+.||+- |..+. ... ... .........|.|.++..+|+|
T Consensus 5 ~Q~P~~~~v~~G~~vtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 84 (113)
T d1h5ba_ 5 EQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSG 84 (113)
T ss_dssp EEECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCE
T ss_pred EECCCEEEEcCCCCEEEEEEEecCCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCE
Confidence 344667778889999999998544567899983 22111 000 111 111223567999999999999
Q ss_pred cEEEEEecccc
Q psy2776 375 DIGVLALNVKS 385 (803)
Q Consensus 375 ~y~c~~~~~~~ 385 (803)
.|.|.+....+
T Consensus 85 ~YyCa~~~~~~ 95 (113)
T d1h5ba_ 85 TYFCAAEASSG 95 (113)
T ss_dssp EEEEEEECSSS
T ss_pred EEEEEecCCCC
Confidence 99999876543
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00017 Score=58.04 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=46.5
Q ss_pred eecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..|+.++|.|.+.|+-+ ..++|++||..+...........+++ .......+..++.+.|+|.+.+....
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~ 89 (100)
T d1k5nb_ 17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLS 89 (100)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTCS
T ss_pred cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCCC
Confidence 45888999999999744 47899999999865432222222222 23334455567778999999987543
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=0.00012 Score=61.33 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=47.0
Q ss_pred CcCeeeecCCcEEEEEEECc---cCC---CeeEEEEcCeecc----------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSG---VPT---PDIKWYKDDSLIK----------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g---~p~---p~i~W~~~~~~~~----------------~~~~~~~----~~~~~L~i~~v 204 (803)
|..+.+.+|+.|.|.|.+.. .+. -.+.|++...... ..++... .+..+|+|.++
T Consensus 7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 86 (118)
T d1qfoa_ 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL 86 (118)
T ss_dssp CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence 45678889999999999852 111 2356777432110 1122222 34567999999
Q ss_pred CCCcceEEEEEEEcCCc
Q psy2776 205 SESSEGRYTCKATNEAG 221 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g 221 (803)
+.+|+|.|.|++....+
T Consensus 87 ~~~DsG~Y~C~v~~~~~ 103 (118)
T d1qfoa_ 87 KPEDSGTYNFRFEISDS 103 (118)
T ss_dssp CGGGCEEEEEEEECC-C
T ss_pred ChhHCEEEEEEEEeCCC
Confidence 99999999999976543
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.45 E-value=0.00023 Score=58.92 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=48.5
Q ss_pred ceEEeecceeEEEEEEcCcC------CCeeEEeeC--Ceee------------cCCCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP------RPEISWMKN--GAEI------------TDSKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p------~~~v~W~~~--g~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
...+.+|++++|.|.+.+.- ...+.|+|. |..+ ....++..........|.|.+++.+|+
T Consensus 10 ~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Ds 89 (113)
T d1q9ra1 10 SLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDL 89 (113)
T ss_dssp EEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCC
Confidence 57789999999999876431 134889873 2211 112344444455667999999999999
Q ss_pred eEEEEEEEc
Q psy2776 577 STYTVTATN 585 (803)
Q Consensus 577 G~Y~C~a~n 585 (803)
|.|.|.+.+
T Consensus 90 a~YyCA~~~ 98 (113)
T d1q9ra1 90 AVYYCKQSY 98 (113)
T ss_dssp EEEEEEECS
T ss_pred eEEEecccC
Confidence 999998753
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.00038 Score=56.97 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=63.3
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
+|..+.+......++.|+|.+|...+ ..+..|.++++.......|..... ....++|.+|.+...|.|+++|.+..
T Consensus 10 ~P~~p~~~~~~~~~i~v~W~pp~~~~-~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~ 88 (106)
T d1cd9b2 10 LDIGPDVVSHQPGCLWLSWKPWKPSE-YMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSS 88 (106)
T ss_dssp CCC-------CCSCEEEEEECCGGGT-TSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESS
T ss_pred CCCCCeEecCCCCEEEEEEcCcccCC-ccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeCC
Confidence 34455666667889999999987654 457889998886555557777654 36778999999999999999999999
Q ss_pred ccCCCcceeeEEE
Q psy2776 123 GTGPASHNTRYVV 135 (803)
Q Consensus 123 g~~~~s~~~~~~~ 135 (803)
|.+..+.-+..+.
T Consensus 89 g~g~wS~wS~~~~ 101 (106)
T d1cd9b2 89 LPGFWSPWSPGLQ 101 (106)
T ss_dssp SCCCCCCCCCCEE
T ss_pred CCCCCcCCCCCeE
Confidence 9877665544443
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.43 E-value=0.00021 Score=59.46 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=48.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee------------ecCCCcEEEE--ecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE------------ITDSKACRIF--IDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~------------i~~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|++++|.|...+. ...+.|++. |.. .....++.+. .......|.|.++..+|+|.|.
T Consensus 9 ~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (115)
T d1ogad1 9 FLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL 87 (115)
T ss_dssp EEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred eEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence 5778999999999997653 346889873 111 0111233222 2344679999999999999999
Q ss_pred EEEEcCCC
Q psy2776 581 VTATNAAG 588 (803)
Q Consensus 581 C~a~n~~g 588 (803)
|.+....+
T Consensus 88 Ca~~~~~~ 95 (115)
T d1ogad1 88 CAGAGSQG 95 (115)
T ss_dssp EEEECTTS
T ss_pred ccccCCCC
Confidence 98875433
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.43 E-value=0.0003 Score=57.49 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=49.8
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c----------CCCCeEEEee--CceEEEEEecCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L----------SSPKKREIFD--GENIILELKEADSE 738 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~----------~~~~~~~~~~--~~~~~L~i~~v~~~ 738 (803)
...+.+|++++|+|++.|.... .+.|++. |+.+ . ...|+.+..| .+...|.|.++ +.
T Consensus 9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l-~~ 87 (120)
T d1dn0b1 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV-TA 87 (120)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC-CG
T ss_pred CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc-cc
Confidence 3467889999999999997654 4779874 2211 1 1346777775 34677999999 78
Q ss_pred CCceeEEEEEEc
Q psy2776 739 TDAGDYKVVATN 750 (803)
Q Consensus 739 ~D~G~Y~C~a~N 750 (803)
+|++.|.| |+.
T Consensus 88 eDtA~YYC-Ar~ 98 (120)
T d1dn0b1 88 ADTAVYYC-ARP 98 (120)
T ss_dssp GGCEEEEE-EEC
T ss_pred ccccEEEE-Eee
Confidence 99999999 543
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.0001 Score=61.08 Aligned_cols=89 Identities=31% Similarity=0.502 Sum_probs=62.7
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc--eeEEEee-----eeeeEEEEeccccCCeEEEE
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIE-----TTSTTYEVTKLTTKHEYMFR 115 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~l~i~~~~~~d~g~y~ 115 (803)
.|++|..+.+......+++|+|.+|.. ++.++..|.++++..... ..|.... .....+.|.+|.+...|.|+
T Consensus 10 ~P~~P~~~~~~~~~~~sv~l~W~pp~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr 88 (111)
T d1wisa1 10 LPGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFR 88 (111)
T ss_dssp CCCCCEEEEEESCCSSCEEEEEECCCC-CSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCC
T ss_pred CCcCCCCCEEEEcCCCEEEEEEeCCCC-CCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEE
Confidence 344444445555668899999998754 567888999877643321 1222211 12567999999999999999
Q ss_pred EEEEccCccCCCcceee
Q psy2776 116 VAAVNAIGTGPASHNTR 132 (803)
Q Consensus 116 c~a~~~~g~~~~s~~~~ 132 (803)
++|.|..|.+..+..+.
T Consensus 89 V~A~N~~G~s~~S~~s~ 105 (111)
T d1wisa1 89 MRQVNIVGTSPPSQPSR 105 (111)
T ss_dssp CEEECSSCBCCCCCCCC
T ss_pred EEEEcCCcCCCCcCCCC
Confidence 99999999988776543
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.41 E-value=0.00038 Score=55.97 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=45.4
Q ss_pred EecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 684 VKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+..|+.++|.|.+.|+ |. ..|.|.+||.++.......... ++.........+ ...+.+.|+|++.-.
T Consensus 15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v-~~~~~~~ytC~V~H~ 85 (99)
T d1lk2b_ 15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF-TPTETDTYACRVKHD 85 (99)
T ss_dssp CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEE-CCCSSCCEEEEEECT
T ss_pred ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEe-cCcCCCEEEEEEEeC
Confidence 4568889999999997 44 4799999999886543332222 233333444444 456778899999864
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.41 E-value=0.00025 Score=58.14 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=51.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceee---c---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEI---T---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i---~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.........+.|++. |+.+ - -..++..........|.|.++..+|+|.|.|.
T Consensus 8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA 87 (108)
T d1nfde1 8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL 87 (108)
T ss_dssp EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence 46688999999999986555557889873 2211 0 11356665566678999999999999999998
Q ss_pred EEc
Q psy2776 583 ATN 585 (803)
Q Consensus 583 a~n 585 (803)
+..
T Consensus 88 ~~~ 90 (108)
T d1nfde1 88 SSY 90 (108)
T ss_dssp EEE
T ss_pred eec
Confidence 764
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.41 E-value=0.00018 Score=59.45 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=48.7
Q ss_pred ceEEeecceeEEEEEEcCcC----CCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP----RPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p----~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|++++|.|...... ...+.|++. |+... ...++..........|.|.++..+|+|.
T Consensus 10 ~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 89 (111)
T d1j05a_ 10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT 89 (111)
T ss_dssp EEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEE
T ss_pred EEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCcc
Confidence 46678999999999875422 234889873 32110 1134444445567899999999999999
Q ss_pred EEEEEEcC
Q psy2776 579 YTVTATNA 586 (803)
Q Consensus 579 Y~C~a~n~ 586 (803)
|.|.+.+.
T Consensus 90 YyCa~~~~ 97 (111)
T d1j05a_ 90 YYCQQTNE 97 (111)
T ss_dssp EEEEECSS
T ss_pred EEEeecCC
Confidence 99987543
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00014 Score=61.47 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=47.1
Q ss_pred CcCeeeecCCcEEEEEEECcc-------CCCeeEEEEcCeecc------------------ceeEEEe----cCeeEEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV-------PTPDIKWYKDDSLIK------------------GRNITYE----NNVARFTV 201 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~-------p~p~i~W~~~~~~~~------------------~~~~~~~----~~~~~L~i 201 (803)
+..+.+.+|+.|.|.|.+... ....+.|++....-. .+++.+. .+..+|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 355788899999999998521 112478988543210 0123322 24568999
Q ss_pred ecCCCCcceEEEEEEEcCC
Q psy2776 202 VNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~ 220 (803)
.+++.+|+|.|.|.+....
T Consensus 88 ~~v~~~DsG~Y~C~v~~~~ 106 (121)
T d2g5ra1 88 RDARMSDAGRYFFRMEKGN 106 (121)
T ss_dssp CSCCGGGCEEEEEEEEETT
T ss_pred CCCChHHCEEEEEEEEeCC
Confidence 9999999999999997643
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.40 E-value=0.00014 Score=60.86 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=49.0
Q ss_pred ccceeEEecCCeEEEEEEEee---cCC---CceEEeeCCee----c-----------cCCCCeEEEee--CceEEEEEec
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKA---SPA---PSIVWFRNNKP----L-----------LSSPKKREIFD--GENIILELKE 734 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g---~p~---~~v~W~~~~~~----l-----------~~~~~~~~~~~--~~~~~L~i~~ 734 (803)
.|..+.+.+|+.|.|.|.... .+. ..+.|++.+.. + ....++.+..+ ...+.|.|.+
T Consensus 6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 85 (118)
T d1qfoa_ 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD 85 (118)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence 345678999999999999852 111 23567763221 1 12334444432 3567899999
Q ss_pred CCCCCCceeEEEEEEcc
Q psy2776 735 ADSETDAGDYKVVATNE 751 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~ 751 (803)
+ +.+|+|.|.|.+...
T Consensus 86 v-~~~DsG~Y~C~v~~~ 101 (118)
T d1qfoa_ 86 L-KPEDSGTYNFRFEIS 101 (118)
T ss_dssp C-CGGGCEEEEEEEECC
T ss_pred C-ChhHCEEEEEEEEeC
Confidence 9 899999999999754
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.39 E-value=0.00023 Score=58.74 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=50.2
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ce---ee---------cCCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GA---EI---------TDSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~---~i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|++++|.|...+.. ...+.|++. +. -| ....++..........|.|.+++.+|+|.|.
T Consensus 9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy 88 (111)
T d1rzfl1 9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY 88 (111)
T ss_dssp EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence 46788999999999976543 345889863 11 11 0123455555566789999999999999999
Q ss_pred EEEEcC
Q psy2776 581 VTATNA 586 (803)
Q Consensus 581 C~a~n~ 586 (803)
|.+...
T Consensus 89 CA~~~~ 94 (111)
T d1rzfl1 89 CGTWDS 94 (111)
T ss_dssp EEEEET
T ss_pred EeecCC
Confidence 988644
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=97.38 E-value=0.00048 Score=56.20 Aligned_cols=87 Identities=16% Similarity=0.300 Sum_probs=66.4
Q ss_pred CCCCCceEEEecCCeEEEEeeCCC-CCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEEEEEc
Q psy2776 45 GAPDTPEIVGRSDSSVTLHWRPPQ-DDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRVAAVN 120 (803)
Q Consensus 45 ~~p~~~~~~~~~~~~v~l~c~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~a~~ 120 (803)
.+|....+......+++|+|.++. ...+.++.+|.+.++..+....|..... ....+.|.+|.+...|.++++|.|
T Consensus 6 ~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N 85 (105)
T d1cfba2 6 KNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIN 85 (105)
T ss_dssp CCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEE
T ss_pred CCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEEEe
Confidence 455556666677889999999753 3455688999998876655545555443 367899999999999999999999
Q ss_pred cCccCCCccee
Q psy2776 121 AIGTGPASHNT 131 (803)
Q Consensus 121 ~~g~~~~s~~~ 131 (803)
..|.+..+...
T Consensus 86 ~~G~gp~S~~~ 96 (105)
T d1cfba2 86 DRGESNVAAEE 96 (105)
T ss_dssp TTEECSSCCCC
T ss_pred CCcCCCCCCCc
Confidence 99998766544
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00018 Score=59.69 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=47.8
Q ss_pred eeEEecCCeEEEEEEEeec--CCCceEEeeC--Cee---cc------------CCCCeEEEee--CceEEEEEecCCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKAS--PAPSIVWFRN--NKP---LL------------SSPKKREIFD--GENIILELKEADSET 739 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~--~~~---l~------------~~~~~~~~~~--~~~~~L~i~~v~~~~ 739 (803)
...+.+|++++|.|...+. ....+.|+|. +.. |. ...|+.+..+ ...++|.|.++ +.+
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l-~~~ 86 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNL-QVE 86 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSC-CGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccC-Ccc
Confidence 3567899999999998643 4456889983 211 10 1124444433 34678999999 899
Q ss_pred CceeEEEEEEc
Q psy2776 740 DAGDYKVVATN 750 (803)
Q Consensus 740 D~G~Y~C~a~N 750 (803)
|+|.|.|.+..
T Consensus 87 Dsg~Y~Cav~~ 97 (113)
T d1smoa_ 87 DSGLYQCVIYQ 97 (113)
T ss_dssp GCEEEEEEECC
T ss_pred cCceEEEEEEC
Confidence 99999998753
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.38 E-value=0.0003 Score=57.37 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=48.4
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------ccC-----------CCCeEEEee--CceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-----------SPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~~-----------~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
....+.+|++++|+|++.|+... .+.|++. |+- |.. ..|+.+..| .+...|.|.++
T Consensus 8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL- 86 (119)
T d1eapb1 8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSL- 86 (119)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC-
T ss_pred CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecc-
Confidence 34567889999999999997544 4788873 211 111 236666665 34678999999
Q ss_pred CCCCceeEEEE
Q psy2776 737 SETDAGDYKVV 747 (803)
Q Consensus 737 ~~~D~G~Y~C~ 747 (803)
+.+|.+.|.|.
T Consensus 87 ~~eDTAvYYCA 97 (119)
T d1eapb1 87 TSEDSAVYFCK 97 (119)
T ss_dssp CGGGCEEEEEE
T ss_pred cCCcceEEEEE
Confidence 78999999994
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.38 E-value=0.00026 Score=58.76 Aligned_cols=73 Identities=8% Similarity=0.059 Sum_probs=49.7
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc---------------CCCCeEEEe-eCceEEEEEecCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL---------------SSPKKREIF-DGENIILELKEADSE 738 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~---------------~~~~~~~~~-~~~~~~L~i~~v~~~ 738 (803)
..|..+.+.+|++++|.|...+ ....+.||+. |+.+. ...++.... ....+.|.|.++ +.
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~ 81 (113)
T d2ntsp1 4 QTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTL-EL 81 (113)
T ss_dssp EECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC-CG
T ss_pred eCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCC-Cc
Confidence 3445677899999999998754 3457899982 22111 122332222 234678999999 89
Q ss_pred CCceeEEEEEEcc
Q psy2776 739 TDAGDYKVVATNE 751 (803)
Q Consensus 739 ~D~G~Y~C~a~N~ 751 (803)
+|+|.|.|.+...
T Consensus 82 ~Dsa~YyCA~~~~ 94 (113)
T d2ntsp1 82 GDSALYLCASSLA 94 (113)
T ss_dssp GGCEEEEEEEESS
T ss_pred ccceeeeeeeeCC
Confidence 9999999988753
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00027 Score=56.95 Aligned_cols=90 Identities=22% Similarity=0.368 Sum_probs=66.4
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc-eeEEEeeeeeeEEEEeccccCCeEEEEEEEEc
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF-MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVN 120 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~ 120 (803)
.+|.+|...........++.|+|.+|.... ..+..|.+.++..+.. ............++|.+|.+...|.|+++|.|
T Consensus 2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~-g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 80 (98)
T d1x5la1 2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPN-GIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRART 80 (98)
T ss_dssp CCCCCCCCEECSCBCSSCEEEEECCCSCCC-SCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEE
T ss_pred cCCCCCCceEEEeccCCEEEEEEECCCCCC-CCEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEEc
Confidence 356666666656667899999999987654 4778898877654432 12223334467899999999999999999999
Q ss_pred cCccCCCcceee
Q psy2776 121 AIGTGPASHNTR 132 (803)
Q Consensus 121 ~~g~~~~s~~~~ 132 (803)
..|.+..+....
T Consensus 81 ~~G~g~~S~~v~ 92 (98)
T d1x5la1 81 SAGCGRFSQAME 92 (98)
T ss_dssp TTEECCCCCCEE
T ss_pred CCCCcCCCCCEE
Confidence 999887666544
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.36 E-value=0.00041 Score=57.95 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=48.6
Q ss_pred ccceeEEecCCeEEEEEEEeecC--CCceEEeeCC---ee--cc-------------CCCCeEEEee--CceEEEEEecC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN---KP--LL-------------SSPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~---~~--l~-------------~~~~~~~~~~--~~~~~L~i~~v 735 (803)
.+..+...+|++++|.|++.+.. ...+.||+.. .+ |. ...++.+..+ ...+.|.|.++
T Consensus 7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l 86 (120)
T d1ypzf1 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (120)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence 33456778899999999987643 3468999831 11 10 1123444433 45688999999
Q ss_pred CCCCCceeEEEEEE
Q psy2776 736 DSETDAGDYKVVAT 749 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~ 749 (803)
+.+|+|.|.|.+.
T Consensus 87 -~~~Dsa~YyCA~~ 99 (120)
T d1ypzf1 87 -EEEDEAIYYCSYG 99 (120)
T ss_dssp -CGGGCSEEEEEEC
T ss_pred -ccccceeEEEEEc
Confidence 7999999999765
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.36 E-value=0.0004 Score=55.91 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=47.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC---eEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK---KREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~---~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.+...+ ...+..|+.++|.|.+.|+ |.. .|.|.+||.++..+.. .....++.........+ ...+...|+|
T Consensus 5 ~P~V~v~~-~~~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v-~~~~~~~ytC 82 (101)
T d1fnga1 5 APEVTVLS-RSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF-LPSTDDFYDC 82 (101)
T ss_dssp CCEEEEEE-SSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE-CCCTTCCEEE
T ss_pred CCeEEEeC-CCcccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE-cCCCCCEEEE
Confidence 45444332 2234567888999999997 554 8999999998864311 11122333222222233 3345568999
Q ss_pred EEEccC
Q psy2776 747 VATNEL 752 (803)
Q Consensus 747 ~a~N~~ 752 (803)
.+.-..
T Consensus 83 ~V~H~s 88 (101)
T d1fnga1 83 EVDHWG 88 (101)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 998753
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Probab=97.35 E-value=0.00059 Score=53.54 Aligned_cols=80 Identities=33% Similarity=0.475 Sum_probs=58.6
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
.|.+|....+......+++|+|.+|... ..+..|.+..... .+ .......+++.+|.+...|.|+++|.+..
T Consensus 3 AP~~P~~l~~~~~~~~sv~lsW~~p~~~--~~i~~Y~i~~~~~----~~--~~~~~t~~~~~~L~p~t~Y~~~V~A~n~~ 74 (88)
T d1k85a_ 3 APTAPTNLASTAQTTSSITLSWTASTDN--VGVTGYDVYNGTA----LA--TTVTGTTATISGLAADTSYTFTVKAKDAA 74 (88)
T ss_dssp SCCCCEEEEEEEECSSCEEEEEECCSCC--SSEEEEEEEESSS----EE--EEESSSEEEECCCCSSCEEEEEEEEEETT
T ss_pred CcCCCCCcEEEEecCCEEEEEEeCCCCC--CCEEEEEEEccce----EE--EecCCCEEEECCCCCCCEEEEEEEEEECC
Confidence 4666666666677789999999988654 3588888765321 11 22346789999999999999999999999
Q ss_pred c-cCCCcce
Q psy2776 123 G-TGPASHN 130 (803)
Q Consensus 123 g-~~~~s~~ 130 (803)
| .+..+..
T Consensus 75 G~~s~~S~~ 83 (88)
T d1k85a_ 75 GNVSAASNA 83 (88)
T ss_dssp TEECCCCCC
T ss_pred CCcCCCCcC
Confidence 8 4555443
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.35 E-value=0.00034 Score=56.75 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=48.0
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|+.++|+|++.|+... .+.|++. |+- |. ...|+.+..|. +...|.|.++ +
T Consensus 9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L-~ 87 (118)
T d1nlbh1 9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL-K 87 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec-c
Confidence 3567899999999999986544 5788873 211 11 12366677653 5677999999 7
Q ss_pred CCCceeEEEE
Q psy2776 738 ETDAGDYKVV 747 (803)
Q Consensus 738 ~~D~G~Y~C~ 747 (803)
.+|++.|.|.
T Consensus 88 ~eDtAvYYCA 97 (118)
T d1nlbh1 88 NEDTATYFCA 97 (118)
T ss_dssp GGGCEEEEEE
T ss_pred cCcceEEEEe
Confidence 8999999994
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.35 E-value=0.00035 Score=57.78 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=48.9
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeC--Cee---e---------cCCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKN--GAE---I---------TDSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~--g~~---i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|++++|.|...+.. ...+.|++. |+. + ....++..........|.|.++..+|+|
T Consensus 11 s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa 90 (113)
T d1n4xl_ 11 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG 90 (113)
T ss_dssp EEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred EEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCE
Confidence 57789999999999986532 246889863 211 1 1124455544556689999999999999
Q ss_pred EEEEEEEc
Q psy2776 578 TYTVTATN 585 (803)
Q Consensus 578 ~Y~C~a~n 585 (803)
.|.|...+
T Consensus 91 vYyCa~~~ 98 (113)
T d1n4xl_ 91 IYYCFQGS 98 (113)
T ss_dssp EEEEEECS
T ss_pred EEEEEECC
Confidence 99996543
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.34 E-value=0.00031 Score=58.20 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=49.6
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc---------------CCCCeEEEe-eCceEEEEEecCC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL---------------SSPKKREIF-DGENIILELKEAD 736 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~---------------~~~~~~~~~-~~~~~~L~i~~v~ 736 (803)
+...|....+.+|++++|.|... .-...+.||+. |..+. ...++.... .+..+.|.|.++
T Consensus 3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~- 80 (113)
T d1j8he1 3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESA- 80 (113)
T ss_dssp EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSC-
T ss_pred EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccC-
Confidence 34455567788999999999874 33457889983 21110 112222222 344578999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+..
T Consensus 81 ~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 81 STNQTSMYLCASSS 94 (113)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred ccCCcccEEeeEcc
Confidence 79999999998874
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.34 E-value=0.00042 Score=57.16 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=47.7
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeC--Cee----e------cC--CCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKN--GAE----I------TD--SKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~--g~~----i------~~--~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|++|+|.|.+.+.. ...+.|++. |.. + .. ..++..........|.|.++..+|++
T Consensus 10 slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsA 89 (112)
T d1mjul1 10 SVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVG 89 (112)
T ss_dssp EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred EEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCc
Confidence 56788999999999986632 346889863 221 1 11 13455555556688999999999999
Q ss_pred EEEEEE
Q psy2776 578 TYTVTA 583 (803)
Q Consensus 578 ~Y~C~a 583 (803)
.|.|..
T Consensus 90 vYyCa~ 95 (112)
T d1mjul1 90 VYYCLQ 95 (112)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 999954
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.34 E-value=0.00025 Score=58.72 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=48.5
Q ss_pred ceEEeecceeEEEEEEcCcCC-CeeEEeeC--Ceeec----------CC--CcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-PEISWMKN--GAEIT----------DS--KACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~--g~~i~----------~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|++|+|.|...+... ..+.|+|. |+.+. .. .++.+..+.....|.|.++..+|+|.|.|
T Consensus 7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC 86 (112)
T d1kgcd1 7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC 86 (112)
T ss_dssp EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred EEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEee
Confidence 467889999999999876543 45899983 22111 11 12333333445789999999999999999
Q ss_pred EEEcC
Q psy2776 582 TATNA 586 (803)
Q Consensus 582 ~a~n~ 586 (803)
.+...
T Consensus 87 a~~~~ 91 (112)
T d1kgcd1 87 ILPLA 91 (112)
T ss_dssp ECCCC
T ss_pred eEecC
Confidence 87543
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.33 E-value=0.00037 Score=57.40 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=48.1
Q ss_pred eEEecCCeEEEEEEEeecCC----CceEEeeC--Ceecc----------------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 682 KTVKEKGTIRLMAKVKASPA----PSIVWFRN--NKPLL----------------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~----~~v~W~~~--~~~l~----------------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
..+.+|++++|.|++.|... ..+.|++. |+.+. ...|+.+..+ .....|.|.++ +
T Consensus 10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l-~ 88 (120)
T d2agjh1 10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNL-D 88 (120)
T ss_dssp SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESC-C
T ss_pred eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEee-e
Confidence 45678999999999988532 24779984 22111 1346666654 34678999999 8
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|++.|.|....
T Consensus 89 ~eDsAvYyCAr~~ 101 (120)
T d2agjh1 89 PVDTATYYCARTS 101 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred eccceEEeeEecC
Confidence 9999999996443
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.33 E-value=0.00033 Score=57.86 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=48.9
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc----------------CCCCeEEEee-CceEEEEEecCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL----------------SSPKKREIFD-GENIILELKEADS 737 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~----------------~~~~~~~~~~-~~~~~L~i~~v~~ 737 (803)
..|..+.+.+|++++|+|...+ -...+.||+. |..+. ...++..... +..+.|.|.++ +
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~-~ 81 (111)
T d2esve1 4 QFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA-E 81 (111)
T ss_dssp EECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC-C
T ss_pred ECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc-c
Confidence 3455677899999999998653 3457899973 21100 1233333332 34578999999 8
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|+|.|.|.+..
T Consensus 82 ~~Dsa~YyCa~~~ 94 (111)
T d2esve1 82 LEDSGVYFCASSQ 94 (111)
T ss_dssp GGGCEEEEEEEES
T ss_pred cCCCceEEEeeeC
Confidence 9999999998763
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=97.33 E-value=0.00031 Score=56.43 Aligned_cols=69 Identities=12% Similarity=0.249 Sum_probs=44.9
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEE-EEecCC--eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACR-IFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~-~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..|+.++|.|.+.|+ |. ..++|++||+.+..+.... .....+ -.......+..++.+.|+|++.+..-.
T Consensus 15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~ 88 (100)
T d1muja1 15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGLE 88 (100)
T ss_dssp CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECCCC
Confidence 457888999999997 33 6889999999887542111 111222 123333344556778999999987533
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.33 E-value=0.00056 Score=57.00 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=47.7
Q ss_pred cceeEEecCCeEEEEEEEeecCCC---ceEEeeC--Ceecc---------------CCCCeEEEeeCceEEEEEecCCCC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAP---SIVWFRN--NKPLL---------------SSPKKREIFDGENIILELKEADSE 738 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~--~~~l~---------------~~~~~~~~~~~~~~~L~i~~v~~~ 738 (803)
|..+.+.+|++++|.|+....-.+ .+.|++. |+.+. .........++....|.|.++ +.
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~ 84 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGL-RA 84 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSC-CG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcC-cc
Confidence 345677889999999998643222 3789983 22110 111122334466789999999 79
Q ss_pred CCceeEEEEEEc
Q psy2776 739 TDAGDYKVVATN 750 (803)
Q Consensus 739 ~D~G~Y~C~a~N 750 (803)
+|+|.|.|.+..
T Consensus 85 ~Dsa~YyCa~~~ 96 (117)
T d1dqta_ 85 VDTGLYLCKVEL 96 (117)
T ss_dssp GGCEEEEEEEEE
T ss_pred ccCEeEEEEEec
Confidence 999999998763
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00061 Score=53.93 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=43.5
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCC--CCeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS--PKKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~--~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.++.++|.|.+.|+ |.. .+.|.+||.++... ....... ++.........+ ...+...|+|.+...
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v-~~~~~~~ytC~V~H~ 84 (94)
T d1de4a1 14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV-PPGEEQRYTCQVEHP 84 (94)
T ss_dssp CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEE-CTTCGGGEEEEEECT
T ss_pred CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEE-CCCCCCEEEEEEEeC
Confidence 46789999999996 654 89999999998532 1122222 233333333444 456777899999986
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.32 E-value=0.00031 Score=55.98 Aligned_cols=30 Identities=13% Similarity=-0.079 Sum_probs=24.3
Q ss_pred eeeccccceeEEEEecCCceeeEEeecCee
Q psy2776 316 TLVPHLGDATFQVELSSPDIQVKWLKKGKE 345 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~ 345 (803)
..+..|+.|+|.|........+.++|+|..
T Consensus 11 ~~V~~G~~VTl~C~~~~~~~~f~L~keg~~ 40 (96)
T d1nkra1 11 PLVKSEETVILQCWSDVMFEHFLLHREGMF 40 (96)
T ss_dssp SEEETTCCEEEEEEESSCCSEEEEEEESSS
T ss_pred CccCCCCcEEEEECCCCCCCEEEEEECCCc
Confidence 445669999999999777788889998753
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00095 Score=54.04 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=66.3
Q ss_pred cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc----eeEEEe---eeeeeEEEEeccccCCeEEE
Q psy2776 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF----MVWNKI---ETTSTTYEVTKLTTKHEYMF 114 (803)
Q Consensus 42 ~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~l~i~~~~~~d~g~y 114 (803)
+.|++|....+......++.|+|.+|...+ .++..|.+.++..... -.|... ......++|.+|.+...|.|
T Consensus 1 d~P~~P~~~~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 79 (103)
T d1qg3a2 1 EVPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 79 (103)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCCCSCCS-SCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEE
T ss_pred CcCccCCCcEEEEecCCEEEEEEEECccCC-CCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEE
Confidence 468888888888889999999999987654 4888898876543221 123222 23367899999999999999
Q ss_pred EEEEEccCccCCCcc
Q psy2776 115 RVAAVNAIGTGPASH 129 (803)
Q Consensus 115 ~c~a~~~~g~~~~s~ 129 (803)
+++|.|..|.+..+.
T Consensus 80 ~V~A~n~~G~g~~s~ 94 (103)
T d1qg3a2 80 TVKARNGAGWGPERE 94 (103)
T ss_dssp EEEEEETTEECCCEE
T ss_pred EEEEEcCCccCCCcc
Confidence 999999999876543
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.32 E-value=0.00035 Score=55.67 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=50.6
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+ ...|..|++|+|.|... .....+.++|+|..-...... .....+..+.+.|.++ +..|+|+|.|.-..
T Consensus 2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v-~~~~~G~Y~C~y~~ 78 (96)
T d1nkra1 2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRM-TQDLAGTYRCYGSV 78 (96)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSC-CGGGCEEEEEEEEB
T ss_pred CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEccc-CcccCeEEEEEEEc
Confidence 34443333 46788999999999875 456678999976531100000 0111234578999999 78999999998764
Q ss_pred c
Q psy2776 751 E 751 (803)
Q Consensus 751 ~ 751 (803)
.
T Consensus 79 ~ 79 (96)
T d1nkra1 79 T 79 (96)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.32 E-value=0.0004 Score=57.23 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=48.0
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeC--Ceee----------c--CCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKN--GAEI----------T--DSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~--g~~i----------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|++|+|.|...+.. ...+.|++. |+.+ . ...++..........|.|.++..+|+|
T Consensus 10 sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsA 89 (112)
T d1ncwl1 10 TISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLG 89 (112)
T ss_dssp EEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCE
Confidence 57789999999999976432 235789863 2211 1 113454444455678999999999999
Q ss_pred EEEEEEEc
Q psy2776 578 TYTVTATN 585 (803)
Q Consensus 578 ~Y~C~a~n 585 (803)
.|.|...+
T Consensus 90 vYYC~~~~ 97 (112)
T d1ncwl1 90 VYYCWQGT 97 (112)
T ss_dssp EEEEEECS
T ss_pred eEEEEcCC
Confidence 99996543
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.31 E-value=0.00044 Score=56.54 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=50.3
Q ss_pred eeEEecCCeEEEEEEEeec--CCCceEEeeC--Ce----ecc---C--------CCCeEEEee--CceEEEEEecCCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKAS--PAPSIVWFRN--NK----PLL---S--------SPKKREIFD--GENIILELKEADSET 739 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~--~~----~l~---~--------~~~~~~~~~--~~~~~L~i~~v~~~~ 739 (803)
...+.+|++++|+|...+. ......|++. |+ .+. . ..|+.+..+ ....+|.|.++ +.+
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L-~~e 82 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDL-QVT 82 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSC-CGG
T ss_pred CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcc-ccC
Confidence 4578899999999999864 4446889984 22 111 0 134555544 45788999999 899
Q ss_pred CceeEEEEEEcc
Q psy2776 740 DAGDYKVVATNE 751 (803)
Q Consensus 740 D~G~Y~C~a~N~ 751 (803)
|+|.|.|...+.
T Consensus 83 Dsa~YyCa~~~~ 94 (110)
T d1u9ka_ 83 DSGLYRCVIYHP 94 (110)
T ss_dssp GCEEEEEEEECT
T ss_pred CCEEEEEEEeCC
Confidence 999999987543
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.31 E-value=0.00035 Score=57.63 Aligned_cols=68 Identities=22% Similarity=0.362 Sum_probs=46.0
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eecc-----------------ceeEEEe---cCeeEEEEecCCCCc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIK-----------------GRNITYE---NNVARFTVVNCSESS 208 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~-----------------~~~~~~~---~~~~~L~i~~v~~~d 208 (803)
|....+.+|++++|.|...+ ....+.||+.. ..+. ..++... +....|+|.++..+|
T Consensus 6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D 84 (111)
T d2esve1 6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED 84 (111)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence 45677889999999998654 23469999732 1110 0111111 224689999999999
Q ss_pred ceEEEEEEEcC
Q psy2776 209 EGRYTCKATNE 219 (803)
Q Consensus 209 ~G~Y~C~a~n~ 219 (803)
+|.|.|.+...
T Consensus 85 sa~YyCa~~~~ 95 (111)
T d2esve1 85 SGVYFCASSQD 95 (111)
T ss_dssp CEEEEEEEESS
T ss_pred CceEEEeeeCC
Confidence 99999976643
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.30 E-value=0.0005 Score=55.09 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCC---CeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSP---KKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~---~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.+...+. ..+..|+..+|.|.+.|+ |. ..|.|.+||.++..+. ......++.........+ ...+...|+|
T Consensus 5 ~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v-~~~~~~~ytC 82 (99)
T d1uvqa1 5 VPEVTVFSK-SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF-LPSADEIYDC 82 (99)
T ss_dssp CCEEEEEES-SCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEE-CCCTTCCEEE
T ss_pred CCEEEEEcC-CcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEE-cCCCCCEEEE
Confidence 565544322 234568889999999998 44 4799999999886432 112222334333333333 3456678999
Q ss_pred EEEcc
Q psy2776 747 VATNE 751 (803)
Q Consensus 747 ~a~N~ 751 (803)
++...
T Consensus 83 ~V~H~ 87 (99)
T d1uvqa1 83 KVEHW 87 (99)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99875
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.30 E-value=0.00024 Score=58.84 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=50.9
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eecc---------------CCCCeEEEe-eCceEEEEEecCC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPLL---------------SSPKKREIF-DGENIILELKEAD 736 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l~---------------~~~~~~~~~-~~~~~~L~i~~v~ 736 (803)
+...|..+.+.+|+.++|.|.... -...+.||+.. ..+. ...++.... .+..+.|.|.++
T Consensus 4 VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~- 81 (113)
T d1nfdb1 4 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL- 81 (113)
T ss_dssp CEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC-
T ss_pred EEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc-
Confidence 345566678899999999998653 34579999842 1110 112332222 234578999999
Q ss_pred CCCCceeEEEEEEccC
Q psy2776 737 SETDAGDYKVVATNEL 752 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~ 752 (803)
+.+|+|.|.|.+....
T Consensus 82 ~~~Dsa~YyCa~~~~~ 97 (113)
T d1nfdb1 82 ELEDSAMYFCASSLRW 97 (113)
T ss_dssp CGGGCEEECEEEESSS
T ss_pred CcCCceeEEEEeecCC
Confidence 8999999999876443
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.29 E-value=0.00084 Score=53.54 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=50.3
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCC---eEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPK---KREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~---~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
||.+.... ...+..++.++|.|.+.|+ | ...++|++||..+..+.. .....++.........+ ...+...|+|
T Consensus 3 PP~V~v~~-~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v-~~~~~~~ytC 80 (98)
T d1hdmb1 3 PPSVQVAK-TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL-TPSYGDTYTC 80 (98)
T ss_dssp CCEEEEEE-CCCCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE-CCCTTCCEEE
T ss_pred CCEEEEEc-CCCccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc-CCCCCCEEEE
Confidence 45544332 1234567889999999997 4 458999999998864432 12222344333333334 3456678999
Q ss_pred EEEccCcc
Q psy2776 747 VATNELGS 754 (803)
Q Consensus 747 ~a~N~~G~ 754 (803)
.+......
T Consensus 81 ~V~H~sl~ 88 (98)
T d1hdmb1 81 VVEHIGAP 88 (98)
T ss_dssp EEECTTSS
T ss_pred EEEeCCCC
Confidence 99986544
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00058 Score=56.57 Aligned_cols=84 Identities=20% Similarity=0.406 Sum_probs=64.1
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
.|.+|....+.. ...++.|+|.+|...+ .++.+|.++++..+..............++|.+|.+...|.|+++|.|..
T Consensus 20 vP~~P~~~~~~~-~~~si~v~W~~p~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 97 (113)
T d1x5ia1 20 VPEVPSSLHVRP-LVTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNV 97 (113)
T ss_dssp CCCSCSEEEEEE-ETTEEEEEEECCSCTT-BCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECSS
T ss_pred CCCCCEeeeeee-CCCEEEEEEEccccCC-ccEEEEEEEeeeccccceeeeeeCCccEEEEeccccCcEEEEEEEEECCC
Confidence 455555444433 4679999999987754 47899999988776654444445557889999999999999999999999
Q ss_pred ccCCCc
Q psy2776 123 GTGPAS 128 (803)
Q Consensus 123 g~~~~s 128 (803)
|.+...
T Consensus 98 G~g~~~ 103 (113)
T d1x5ia1 98 GEGIPL 103 (113)
T ss_dssp CBCCCC
T ss_pred cCCCCe
Confidence 987643
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.27 E-value=0.0002 Score=59.53 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=47.5
Q ss_pred ccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eecc------C---------CCCeEEEe-eCceEEEEEecCCCCC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPLL------S---------SPKKREIF-DGENIILELKEADSET 739 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l~------~---------~~~~~~~~-~~~~~~L~i~~v~~~~ 739 (803)
.|..+.+.+|++|+|.|... .....+.||+.. ..+. . ..++.... ....+.|.|.++ +.+
T Consensus 5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~ 82 (114)
T d1ogae1 5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA-QKN 82 (114)
T ss_dssp SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC-CSC
T ss_pred cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcC-CcC
Confidence 34456789999999999975 445679999842 1110 0 11111111 234567999999 899
Q ss_pred CceeEEEEEEc
Q psy2776 740 DAGDYKVVATN 750 (803)
Q Consensus 740 D~G~Y~C~a~N 750 (803)
|+|.|.|.+..
T Consensus 83 DSa~YyCa~~~ 93 (114)
T d1ogae1 83 PTAFYLCASSS 93 (114)
T ss_dssp CCEEEEEEEES
T ss_pred CceeEEEeecc
Confidence 99999997764
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.26 E-value=0.00036 Score=57.82 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=46.4
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEE--cCeecc-------c---------eeE-E--EecCeeEEEEecCCCCcc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYK--DDSLIK-------G---------RNI-T--YENNVARFTVVNCSESSE 209 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~--~~~~~~-------~---------~~~-~--~~~~~~~L~i~~v~~~d~ 209 (803)
|....+.+|++++|.|...+. ...+.||+ .+.... . .++ . .......|+|.++.++|+
T Consensus 6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 84 (113)
T d2ntsp1 6 PRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS 84 (113)
T ss_dssp CSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred CCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence 455678899999999997642 34699998 332110 0 011 1 112346899999999999
Q ss_pred eEEEEEEEcC
Q psy2776 210 GRYTCKATNE 219 (803)
Q Consensus 210 G~Y~C~a~n~ 219 (803)
|.|.|.+...
T Consensus 85 a~YyCA~~~~ 94 (113)
T d2ntsp1 85 ALYLCASSLA 94 (113)
T ss_dssp EEEEEEEESS
T ss_pred eeeeeeeeCC
Confidence 9999987653
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.25 E-value=0.00092 Score=54.58 Aligned_cols=69 Identities=10% Similarity=0.189 Sum_probs=47.7
Q ss_pred CeeeecCCcEEEEEEECcc--CCCeeEEEEc--Cee----cc------------ceeEEEe----cCeeEEEEecCCCCc
Q psy2776 153 DSVAGFQSSVTLECVVSGV--PTPDIKWYKD--DSL----IK------------GRNITYE----NNVARFTVVNCSESS 208 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~--~~~----~~------------~~~~~~~----~~~~~L~i~~v~~~d 208 (803)
...+.+|++++|.|...+. ....+.|++. +.. +. .+++... .+..+|+|.+++.+|
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD 83 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD 83 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence 4567899999999998853 4456889983 221 10 0122221 245789999999999
Q ss_pred ceEEEEEEEcCCc
Q psy2776 209 EGRYTCKATNEAG 221 (803)
Q Consensus 209 ~G~Y~C~a~n~~g 221 (803)
+|.|.|.......
T Consensus 84 sa~YyCa~~~~~~ 96 (110)
T d1u9ka_ 84 SGLYRCVIYHPPN 96 (110)
T ss_dssp CEEEEEEEECTTS
T ss_pred CEEEEEEEeCCCC
Confidence 9999998865443
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00012 Score=58.48 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=52.1
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
+|.+...+. ..|..|++|+|+|... .+...+.++|++..... ...........+.|.+++.+|+|.|+|.....
T Consensus 4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~ 79 (96)
T d1ugna1 4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 79 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence 566666665 4477999999999964 45557889998753221 11111224467999999999999999987643
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.25 E-value=0.00049 Score=57.39 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=46.0
Q ss_pred ceEEeecceeEEEEEEcCcCCC---eeEEeeC--Ceeec---------------CCCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP---EISWMKN--GAEIT---------------DSKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~---~v~W~~~--g~~i~---------------~~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
...+.+|++++|.|.......+ .+.|+|. |+... +..............|.|.++..+|+
T Consensus 8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 87 (117)
T d1dqta_ 8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT 87 (117)
T ss_dssp EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence 3566889999999998643322 4779973 22110 00112223344567999999999999
Q ss_pred eEEEEEEEc
Q psy2776 577 STYTVTATN 585 (803)
Q Consensus 577 G~Y~C~a~n 585 (803)
|.|.|.+..
T Consensus 88 a~YyCa~~~ 96 (117)
T d1dqta_ 88 GLYLCKVEL 96 (117)
T ss_dssp EEEEEEEEE
T ss_pred EeEEEEEec
Confidence 999998753
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.25 E-value=0.00053 Score=55.68 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=49.6
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|+... .+.|++. |+- |. ...|+.+..|. +...|.|.++ +
T Consensus 9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L-~ 87 (117)
T d1iqdb1 9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSL-R 87 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeeccc-C
Confidence 4567889999999999987444 4778873 211 11 23456666653 4567999999 7
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|++.|.|....
T Consensus 88 ~eDtAvYYCA~~~ 100 (117)
T d1iqdb1 88 SDDTAVYYCAVPD 100 (117)
T ss_dssp GGGCEEEEEEECS
T ss_pred cCcceEEEEeEcC
Confidence 9999999997654
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00097 Score=52.89 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=49.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEEEee--CceEEEEEecCCCCCCceeEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFD--GENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
||.+.... ....|+.++|.|.+.|+ |. ..|.|.+||..+........... +.........+ ...+...|+|.
T Consensus 3 PP~V~v~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~-~~~~~~~ytC~ 78 (94)
T d1t7va1 3 PPSVVVTS---HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAV-PPQDTAPYSCH 78 (94)
T ss_dssp CCEEEEEE---EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEE-CTTCCSCEEEE
T ss_pred CCEeEEec---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEe-CCCCCCEEEEE
Confidence 55554322 23458899999999996 65 48999999998764433322222 33333444444 45666789999
Q ss_pred EEccC
Q psy2776 748 ATNEL 752 (803)
Q Consensus 748 a~N~~ 752 (803)
+.-..
T Consensus 79 V~H~s 83 (94)
T d1t7va1 79 VQHSS 83 (94)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 98653
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.24 E-value=0.00047 Score=56.99 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=48.3
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ce-e--c-------------cCCCCeEEEe-eCceEEEEEecCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NK-P--L-------------LSSPKKREIF-DGENIILELKEADS 737 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~-~--l-------------~~~~~~~~~~-~~~~~~L~i~~v~~ 737 (803)
..|....+.+|++++|.|...+ ....+.||+. ++ + + ....++.... ....+.|.|.++ +
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~ 81 (112)
T d1kgce1 4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT-Q 81 (112)
T ss_dssp EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC-C
T ss_pred ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC-C
Confidence 3455677899999999998643 4457899983 11 1 0 0122333332 234578999999 8
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|+|.|.|.+.
T Consensus 82 ~~Dsa~YyCa~~ 93 (112)
T d1kgce1 82 QEDSAVYLCASS 93 (112)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCCEEEEEeee
Confidence 999999999875
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=0.00061 Score=55.14 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=49.2
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceecc----------------CCCCeEEEeeC--ceEEEEEecCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPLL----------------SSPKKREIFDG--ENIILELKEADSE 738 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l~----------------~~~~~~~~~~~--~~~~L~i~~v~~~ 738 (803)
...+.+|++++|+|++.|.... .+.|++. |+.++ ...|+.+..|. +...|.|.++ +.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL-~~ 87 (117)
T d1c5db1 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL-QT 87 (117)
T ss_dssp CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC-CG
T ss_pred CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc-cc
Confidence 3567899999999999987554 5788873 22211 12467777663 4577999999 79
Q ss_pred CCceeEEEEE
Q psy2776 739 TDAGDYKVVA 748 (803)
Q Consensus 739 ~D~G~Y~C~a 748 (803)
+|.+.|.|..
T Consensus 88 eDtAvYYCAr 97 (117)
T d1c5db1 88 EDTAIYFCTR 97 (117)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEec
Confidence 9999999953
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00099 Score=53.22 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE-----EEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI-----TYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~-----~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
..|.+...+.. .|..|++|+|+|... .....+.++|++........ ...+....+.|.+++.+|+|.|+|.-.
T Consensus 3 pkPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~ 80 (98)
T d1ugna2 3 IKPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY 80 (98)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence 45677776654 488999999999975 34456888888765432211 112345679999999999999999876
Q ss_pred cCC
Q psy2776 218 NEA 220 (803)
Q Consensus 218 n~~ 220 (803)
...
T Consensus 81 ~~~ 83 (98)
T d1ugna2 81 DSN 83 (98)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.22 E-value=0.00039 Score=57.27 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=48.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee---ec---------CCCcEEEEec--CCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE---IT---------DSKACRIFID--EETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~---i~---------~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|++++|.|.....-...+.|+|. |+. |- ...++..... .....|.|.++..+|+|.|.
T Consensus 9 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Yy 88 (110)
T d1ac6a_ 9 QVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYY 88 (110)
T ss_dssp EEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEE
T ss_pred eEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccc
Confidence 57789999999999987655567899973 221 00 0123333322 23468999999999999999
Q ss_pred EEEEcC
Q psy2776 581 VTATNA 586 (803)
Q Consensus 581 C~a~n~ 586 (803)
|.+...
T Consensus 89 CA~~~~ 94 (110)
T d1ac6a_ 89 CALSGG 94 (110)
T ss_dssp EEEEET
T ss_pred eeecCC
Confidence 988653
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00047 Score=55.20 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC--eEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~--~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+|.+...+ ...|..|++|+|.|... .....+.++|+|........ ......+....+.|.++ +..|+|+|+|.-.
T Consensus 4 kPsLsa~P-~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v-~~~~~G~Y~C~y~ 80 (98)
T d1ugna2 4 KPTLSAQP-SPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPV-SPSRRWWYRCYAY 80 (98)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCC-CTTSCEEEEEEEE
T ss_pred CCEEEeeC-CCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeec-ccCCCeEEEEeeE
Confidence 45555555 44689999999999864 45567888887764321110 01112345678999999 7899999999876
Q ss_pred cc
Q psy2776 750 NE 751 (803)
Q Consensus 750 N~ 751 (803)
..
T Consensus 81 ~~ 82 (98)
T d1ugna2 81 DS 82 (98)
T ss_dssp CT
T ss_pred cC
Confidence 43
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.22 E-value=0.00043 Score=57.91 Aligned_cols=69 Identities=23% Similarity=0.470 Sum_probs=47.7
Q ss_pred cCcCeeeecCCcEEEEEEECccC--CCeeEEEEc--Ceecc-------------ceeE--EEe--cCeeEEEEecCCCCc
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVP--TPDIKWYKD--DSLIK-------------GRNI--TYE--NNVARFTVVNCSESS 208 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~--~~~~~-------------~~~~--~~~--~~~~~L~i~~v~~~d 208 (803)
.+..+.+.+|++++|.|...+.. ...+.|++. +..+. ..++ ..+ .+...|.|.+++++|
T Consensus 7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~D 86 (120)
T d1hxma1 7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD 86 (120)
T ss_dssp SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccC
Confidence 34556788999999999987543 345899973 22110 0122 222 345789999999999
Q ss_pred ceEEEEEEEc
Q psy2776 209 EGRYTCKATN 218 (803)
Q Consensus 209 ~G~Y~C~a~n 218 (803)
+|.|.|....
T Consensus 87 sa~YyCA~~~ 96 (120)
T d1hxma1 87 EGSYYCACDT 96 (120)
T ss_dssp CEEEEEEEEC
T ss_pred CceeecCccc
Confidence 9999997654
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.22 E-value=0.00065 Score=55.46 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=50.0
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc----------CCCCeEEEee--CceEEEEEecCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL----------SSPKKREIFD--GENIILELKEADSE 738 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~----------~~~~~~~~~~--~~~~~L~i~~v~~~ 738 (803)
...+.+|++++|+|++.|.... .+.|++. |+- +. ...|+.+..| .+...|.|.++ +.
T Consensus 8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L-~~ 86 (119)
T d1kxvc_ 8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSL-KP 86 (119)
T ss_dssp CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSC-CG
T ss_pred CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccC-Cc
Confidence 3567889999999999987554 4779884 111 11 1246777665 34678999999 79
Q ss_pred CCceeEEEEEEc
Q psy2776 739 TDAGDYKVVATN 750 (803)
Q Consensus 739 ~D~G~Y~C~a~N 750 (803)
+|++.|.|.+.-
T Consensus 87 eDtA~YYCAr~~ 98 (119)
T d1kxvc_ 87 DDTAMYYCKPSL 98 (119)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCcceEeeeecc
Confidence 999999996654
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.21 E-value=0.00069 Score=55.93 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=45.5
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec-------c----------ceeEEE---ecCeeEEEEecCCCCc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI-------K----------GRNITY---ENNVARFTVVNCSESS 208 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~-------~----------~~~~~~---~~~~~~L~i~~v~~~d 208 (803)
|....+.+|++++|.|...+ ....+.||+.. +.+ . ..++.. ......|+|.+++++|
T Consensus 6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 84 (112)
T d1kgce1 6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED 84 (112)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence 45567889999999998653 33469999832 110 0 011111 1234689999999999
Q ss_pred ceEEEEEEEc
Q psy2776 209 EGRYTCKATN 218 (803)
Q Consensus 209 ~G~Y~C~a~n 218 (803)
+|.|.|.+..
T Consensus 85 sa~YyCa~~~ 94 (112)
T d1kgce1 85 SAVYLCASSL 94 (112)
T ss_dssp CEEEEEEEES
T ss_pred CEEEEEeeeC
Confidence 9999998754
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.21 E-value=0.00028 Score=57.06 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=44.7
Q ss_pred ecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 685 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..++.++|.|.+.|+ |. ..|.|.++|........-....++. .+.|.|..- .-+.|.|+|.+....+...
T Consensus 18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~--~w~~~~ytC~V~H~~~~~~ 92 (101)
T d1kcvh2 18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASG--TWPSASVTCLVAHPKSSTA 92 (101)
T ss_dssp TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETT--TTTTSCCEEEEEEGGGTEE
T ss_pred cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchh--hcCCCeEEEEEEeCCCCee
Confidence 457899999999996 54 3799998886532111111223333 345666543 2347889999998766543
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.21 E-value=0.00072 Score=54.72 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=49.3
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|.... .+.|++. |+- |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L-~ 87 (117)
T d1jpth1 9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSL-R 87 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccccc-C
Confidence 4568899999999999997544 5778773 211 11 1345667665 44677999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (117)
T d1jpth1 88 AEDTAVYYCARD 99 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCCceEEEEeec
Confidence 899999999654
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.21 E-value=0.00061 Score=54.51 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=43.9
Q ss_pred EecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC---eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 684 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK---KREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~---~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
...++..+|.|.+.|+ |.. .|.|.+||.++..+.. .....++....+....+ ...+...|+|.+....-
T Consensus 15 ~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~-~~~~~~~ytC~V~H~sl 88 (98)
T d1d5mb1 15 QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLET-VPRSGEVYTCQVEHPSV 88 (98)
T ss_dssp ------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEEC-CCCTTCEEEEEEECTTC
T ss_pred cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeE-cCCCCCEEEEEEEECCC
Confidence 3456778899999997 443 7999999998854321 12223445555555566 46788899999987543
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.20 E-value=0.00063 Score=56.24 Aligned_cols=71 Identities=8% Similarity=0.252 Sum_probs=47.7
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCee--c------cc----------eeE---EEecCeeEEEEecCCCC
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL--I------KG----------RNI---TYENNVARFTVVNCSES 207 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~--~------~~----------~~~---~~~~~~~~L~i~~v~~~ 207 (803)
..|..+.+.+|++++|.|...+ ....+.||+.... + .. .++ ...+....|+|.+++.+
T Consensus 6 Q~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 84 (113)
T d1nfdb1 6 QSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE 84 (113)
T ss_dssp EECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGG
T ss_pred EcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcC
Confidence 3456677889999999998654 2346999984421 1 00 011 11123468999999999
Q ss_pred cceEEEEEEEcCC
Q psy2776 208 SEGRYTCKATNEA 220 (803)
Q Consensus 208 d~G~Y~C~a~n~~ 220 (803)
|+|.|.|.+....
T Consensus 85 Dsa~YyCa~~~~~ 97 (113)
T d1nfdb1 85 DSAMYFCASSLRW 97 (113)
T ss_dssp GCEEECEEEESSS
T ss_pred CceeEEEEeecCC
Confidence 9999999876443
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.002 Score=47.16 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=41.3
Q ss_pred eecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 521 SVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
..|..+.|+|.....+.+ --.|.|+|+.|...... +....+.|. ..+++|+|.|+.-+
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~--~~D~SGeY~CVFl~ 69 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLP 69 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEES
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----CCceEEEEe--cCCCCceEEEEEcC
Confidence 568889999998765442 34699999999875321 123455555 37889999999653
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.19 E-value=0.00035 Score=57.74 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=47.7
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc---------------CCCCeEEE-eeCceEEEEEecCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL---------------SSPKKREI-FDGENIILELKEADSE 738 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~---------------~~~~~~~~-~~~~~~~L~i~~v~~~ 738 (803)
..|....+.+|++++|.|.... -...+.||+. |+.+. ...++... .......|.|.++ ..
T Consensus 4 Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~ 81 (112)
T d2bnub1 4 QTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSA-AP 81 (112)
T ss_dssp EECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSC-CG
T ss_pred ECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCC-CH
Confidence 3445567899999999998754 3457999983 21110 01112221 1233567999999 79
Q ss_pred CCceeEEEEEEc
Q psy2776 739 TDAGDYKVVATN 750 (803)
Q Consensus 739 ~D~G~Y~C~a~N 750 (803)
+|+|.|.|.+..
T Consensus 82 ~DsavYyCA~~~ 93 (112)
T d2bnub1 82 SQTSVYFCASSY 93 (112)
T ss_dssp GGCEEEEEEEEC
T ss_pred HHCEEEEEeecC
Confidence 999999998763
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.18 E-value=0.00036 Score=57.57 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=48.5
Q ss_pred ceEEeecceeEEEEEEcCcCC--CeeEEeeC--Ceee------------cCCCcEEEEe--cCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR--PEISWMKN--GAEI------------TDSKACRIFI--DEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~--g~~i------------~~~~~~~~~~--~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|++++|.|...+... .-+.|+|. ++.+ ....++.... ......|.|.++..+|+|.
T Consensus 9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~ 88 (111)
T d1cd0a_ 9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD 88 (111)
T ss_dssp EEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred eeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcE
Confidence 477899999999999876432 34889873 2211 0113444443 3446799999999999999
Q ss_pred EEEEEEc
Q psy2776 579 YTVTATN 585 (803)
Q Consensus 579 Y~C~a~n 585 (803)
|.|.+.+
T Consensus 89 YyCA~~~ 95 (111)
T d1cd0a_ 89 YYCQSYD 95 (111)
T ss_dssp EEEEEEE
T ss_pred EEEeecc
Confidence 9998754
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.17 E-value=0.0008 Score=54.68 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=50.6
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL-~ 87 (118)
T d2fbjh1 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV-R 87 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeecccccc-C
Confidence 4568889999999999997554 4778863 211 11 1235666665 34567999999 7
Q ss_pred CCCceeEEEEEEccC
Q psy2776 738 ETDAGDYKVVATNEL 752 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~ 752 (803)
.+|++.|.|......
T Consensus 88 ~eDtAvYYCAr~~~~ 102 (118)
T d2fbjh1 88 SEDTALYYCARLHYY 102 (118)
T ss_dssp GGGCEEEEEEEEETT
T ss_pred CCcceEEEeeEecCC
Confidence 899999999765543
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.17 E-value=0.00078 Score=55.18 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=49.5
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+.++|+|++.|.... .+.|++. |+.+ . ...|+.+..+ .+...|.|.++ +
T Consensus 9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l-~ 87 (120)
T d1pg7x1 9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRL-T 87 (120)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccccc-C
Confidence 4567889999999999986543 4778873 2211 1 1236666655 44677999999 7
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|++.|.|....
T Consensus 88 ~eDtA~YYCAr~~ 100 (120)
T d1pg7x1 88 SNDSAVYYCARED 100 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred CCcceEEEeeecC
Confidence 8999999998653
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.16 E-value=0.0008 Score=54.96 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=51.0
Q ss_pred cceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v 735 (803)
.....+.+|++++|+|++.|.... .+.|++. |+. |. ...|+.+..| .+...|.|.++
T Consensus 8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L 87 (122)
T d1vgeh1 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL 87 (122)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence 334568899999999999997654 4778873 111 11 1246667765 34567999999
Q ss_pred CCCCCceeEEEEEEc
Q psy2776 736 DSETDAGDYKVVATN 750 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N 750 (803)
+.+|++.|.|....
T Consensus 88 -~~eDtA~YYCAr~~ 101 (122)
T d1vgeh1 88 -RPEDTAVYYCARDP 101 (122)
T ss_dssp -CGGGCEEEEEEEET
T ss_pred -CCCcceEEEEeecC
Confidence 78999999997653
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.16 E-value=0.00078 Score=53.85 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=42.9
Q ss_pred eecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecC--CeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDE--ETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~--~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..++..+|.|.+.|+-+ ..++|++||..+..+... .....+ .-+.+....+...+...|+|.|.+..-.
T Consensus 16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~ 89 (98)
T d1d5mb1 16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 89 (98)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCS
T ss_pred ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCC
Confidence 34667789999998644 478999999988654211 111122 2234444566677888999999987544
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00034 Score=56.69 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC---eEEEeeCce---EEEEEecCCCCCCcee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK---KREIFDGEN---IILELKEADSETDAGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~---~~~~~~~~~---~~L~i~~v~~~~D~G~ 743 (803)
+|.+...+....-..++.++|.|.+.|+ |.. .|.|++||..+..+.. .....++.. +.|.|... .-.....
T Consensus 5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~-~w~~~~~ 83 (102)
T d1rzfl2 5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPE-QWKSHRS 83 (102)
T ss_dssp CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHH-HHHHSSC
T ss_pred CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHH-HhCCCCE
Confidence 5555443322222246779999999996 543 7999999998864321 111223333 34555432 1112455
Q ss_pred EEEEEEccCc
Q psy2776 744 YKVVATNELG 753 (803)
Q Consensus 744 Y~C~a~N~~G 753 (803)
|+|.+.....
T Consensus 84 ytC~V~H~~~ 93 (102)
T d1rzfl2 84 YSCQVTHEGS 93 (102)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEEECCc
Confidence 9999998643
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00075 Score=53.40 Aligned_cols=66 Identities=11% Similarity=0.283 Sum_probs=43.9
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCC--CcEEEEecCC--eEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDS--KACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~--~~~~~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.++.++|.|.+.|+ |. ..++|++||+.+..+ .......+++ -.......+...+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s 85 (94)
T d1de4a1 14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG 85 (94)
T ss_dssp CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 46678999999995 54 489999999988543 1122222222 2233344555667778999999874
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00038 Score=56.39 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=48.1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC---eEEEeeCce---EEEEEecCCCCCCcee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK---KREIFDGEN---IILELKEADSETDAGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~---~~~~~~~~~---~~L~i~~v~~~~D~G~ 743 (803)
+|.+...+.......++.++|.|.+.|+ |. ..|.|++||.++..+.. .....++.. +.|.|..- .-.....
T Consensus 5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~-~w~~~~~ 83 (102)
T d1q0xl2 5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTAR-AWERHSS 83 (102)
T ss_dssp CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHH-HHTTCCE
T ss_pred CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHH-HhCCCCE
Confidence 4544433322222245689999999987 54 37999999998754321 111123332 44556543 1234677
Q ss_pred EEEEEEccCcc
Q psy2776 744 YKVVATNELGS 754 (803)
Q Consensus 744 Y~C~a~N~~G~ 754 (803)
|+|.|......
T Consensus 84 ytC~V~H~~~~ 94 (102)
T d1q0xl2 84 YSCQVTHEGHS 94 (102)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEECCcc
Confidence 99999976443
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.14 E-value=0.00092 Score=54.19 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=49.9
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c----------CCCCeEEEee--CceEEEEEecCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L----------SSPKKREIFD--GENIILELKEADSE 738 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~----------~~~~~~~~~~--~~~~~L~i~~v~~~ 738 (803)
...+.+|++++|+|++.|+... .+.|++. |+-+ . ...|+.+..| .+...|.|.++ +.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L-~~ 87 (116)
T d7fabh1 9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV-TA 87 (116)
T ss_dssp CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC-CG
T ss_pred CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc-cc
Confidence 3567889999999999987554 4778873 2211 1 1246667665 34678999999 79
Q ss_pred CCceeEEEEEEc
Q psy2776 739 TDAGDYKVVATN 750 (803)
Q Consensus 739 ~D~G~Y~C~a~N 750 (803)
+|.+.|.|...-
T Consensus 88 eDtAvYyCAr~~ 99 (116)
T d7fabh1 88 ADTAVYYCARNL 99 (116)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceEEEeeeec
Confidence 999999997543
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.14 E-value=0.00076 Score=55.32 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=47.6
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|.... .+.|++. |+.+ . ...|+.+..+ .+...|.|.++ +
T Consensus 9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L-~ 87 (119)
T d1qnzh_ 9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRL-T 87 (119)
T ss_dssp CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEE-C
T ss_pred CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeeccc-C
Confidence 3467889999999999986433 4788873 2211 1 1235666654 34567999999 7
Q ss_pred CCCceeEEEEE
Q psy2776 738 ETDAGDYKVVA 748 (803)
Q Consensus 738 ~~D~G~Y~C~a 748 (803)
.+|++.|.|..
T Consensus 88 ~eDsAvYYCA~ 98 (119)
T d1qnzh_ 88 SDDSAVYYCAI 98 (119)
T ss_dssp GGGCEEEEEEE
T ss_pred ccceeEEEEEE
Confidence 99999999954
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.13 E-value=0.00026 Score=58.57 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=49.3
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eecc---------------CCCCeEEE-eeCceEEEEEecCCCC
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPLL---------------SSPKKREI-FDGENIILELKEADSE 738 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l~---------------~~~~~~~~-~~~~~~~L~i~~v~~~ 738 (803)
..|....+.+|+.++|.|.... -...+.||+.. ..+. ...++... .......|.|.++ +.
T Consensus 3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~ 80 (112)
T d2cdeb1 3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESA-RP 80 (112)
T ss_dssp EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSC-CT
T ss_pred ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccc-cc
Confidence 3455677899999999999753 34578999842 1110 01111111 1234567999999 79
Q ss_pred CCceeEEEEEEccCc
Q psy2776 739 TDAGDYKVVATNELG 753 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G 753 (803)
+|+|.|.|.+....|
T Consensus 81 ~Dsa~YyCA~~~~~~ 95 (112)
T d2cdeb1 81 SHTSQYLCASSENIG 95 (112)
T ss_dssp TTCSEEEEEEECSSS
T ss_pred cccccEEEEEecCCC
Confidence 999999998876544
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.0013 Score=53.32 Aligned_cols=85 Identities=11% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCCCCCceEEEec--CCeEEEEeeCCCC-CCCCCeEEEEEEeecCCCceeEEEeeee--eeEEEEeccccCCeEEEEEEE
Q psy2776 44 PGAPDTPEIVGRS--DSSVTLHWRPPQD-DGHSPVTGYVLESHDKDEFMVWNKIETT--STTYEVTKLTTKHEYMFRVAA 118 (803)
Q Consensus 44 p~~p~~~~~~~~~--~~~v~l~c~~p~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~c~a 118 (803)
|+||..+.+.... ...+.|+|.+|.. .++..+..|.++++..+.. .|...... ...+.|.+|.+...|.|+++|
T Consensus 2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra 80 (104)
T d1n26a3 2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK-TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRA 80 (104)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCS-CCEEEECGGGCSEEEESSCCTTCCEEEEEEE
T ss_pred CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCC-ceeeeccccceEEEEECCCCCCCEEEEEEEE
Confidence 6677666655543 4579999999864 4566778888888876665 67665543 578999999999999999999
Q ss_pred EccCccCCCcc
Q psy2776 119 VNAIGTGPASH 129 (803)
Q Consensus 119 ~~~~g~~~~s~ 129 (803)
.+..|.+..+.
T Consensus 81 ~n~~g~g~wSe 91 (104)
T d1n26a3 81 QEEFGQGEWSE 91 (104)
T ss_dssp EETTTBSCCCC
T ss_pred EeCCCccCCcC
Confidence 99999877664
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.12 E-value=1.7e-05 Score=63.86 Aligned_cols=71 Identities=17% Similarity=0.343 Sum_probs=48.8
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc------------CCCCeEEEee--CceEEEEEecCCCCCCceeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------SSPKKREIFD--GENIILELKEADSETDAGDYK 745 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~------------~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
+.|.+|++|+|+|...+ ....+.||+. |..+. ...++.+..+ .....|.|.++ +.+|+|.|.
T Consensus 3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~~~Dsa~Yy 80 (96)
T d1ymmd1 3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITAS-RAADTASYF 80 (96)
T ss_dssp CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSC-CSTTCSCCE
T ss_pred ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCC-CcccCEEEe
Confidence 45788999999998764 3457999983 22111 1233333322 34567999999 899999999
Q ss_pred EEEEccCcc
Q psy2776 746 VVATNELGS 754 (803)
Q Consensus 746 C~a~N~~G~ 754 (803)
|.+....|.
T Consensus 81 CA~~~~~g~ 89 (96)
T d1ymmd1 81 CATDTTSGT 89 (96)
T ss_dssp EEEEETTSC
T ss_pred EeEecCCCC
Confidence 998766554
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0019 Score=51.27 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=60.7
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEE--EeeeeeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWN--KIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
+|....+......++.|+|.+|.. ..+.+|.++.+..+...... ........+.|.+|.+...|.|++.|.+..|
T Consensus 8 ~P~~l~v~~~t~~si~l~W~~p~~---~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~g 84 (95)
T d2fnba_ 8 QLTDLSFVDITDSSIGLRWTPLNS---STIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGG 84 (95)
T ss_dssp CCTTCEEECCCSSCEEEECCCCCC---SSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETTE
T ss_pred cCCCeEEEEEcCCEEEEEEEecCC---ceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCCc
Confidence 566677777889999999998743 46788998877655542222 2233467899999999999999999999988
Q ss_pred cCCCc
Q psy2776 124 TGPAS 128 (803)
Q Consensus 124 ~~~~s 128 (803)
.+.++
T Consensus 85 ~s~p~ 89 (95)
T d2fnba_ 85 ESAPT 89 (95)
T ss_dssp ECCCC
T ss_pred EeCCE
Confidence 76544
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.12 E-value=0.00047 Score=57.18 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=46.2
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc-------ce---------eEEE---ecCeeEEEEecCCCCcc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK-------GR---------NITY---ENNVARFTVVNCSESSE 209 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~-------~~---------~~~~---~~~~~~L~i~~v~~~d~ 209 (803)
|..+.+.+|++++|.|.... ....+.||+... .+. .. .... .+....|.|.++.++|+
T Consensus 6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS 84 (114)
T d1ogae1 6 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT 84 (114)
T ss_dssp CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred CCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence 45567889999999999863 345799998332 110 00 0111 12345799999999999
Q ss_pred eEEEEEEEcC
Q psy2776 210 GRYTCKATNE 219 (803)
Q Consensus 210 G~Y~C~a~n~ 219 (803)
|.|.|.+...
T Consensus 85 a~YyCa~~~~ 94 (114)
T d1ogae1 85 AFYLCASSSR 94 (114)
T ss_dssp EEEEEEEESS
T ss_pred eeEEEeeccC
Confidence 9999976644
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.12 E-value=0.0022 Score=51.71 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=62.8
Q ss_pred CCCCCCCceEE----EecCCeEEEEeeCCCC---CCCCCeEEEEEEeecCCCceeEEEee-eeeeEEEEeccccCCeEEE
Q psy2776 43 APGAPDTPEIV----GRSDSSVTLHWRPPQD---DGHSPVTGYVLESHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYMF 114 (803)
Q Consensus 43 ~p~~p~~~~~~----~~~~~~v~l~c~~p~~---~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y 114 (803)
.|.||..+.+. ...+.+++|+|.+|.. .++..+..|.+++++.+.. .|.... .....+.|.+|.+...|.+
T Consensus 2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~ 80 (103)
T d1f6fb2 2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAE-EWEIHFTGHQTQFKVFDLYPGQKYLV 80 (103)
T ss_dssp CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCS-CCEEEEEETCSEEEECCCCTTCEEEE
T ss_pred CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCc-ceeeecccceeEEEeCCCCcceEEEE
Confidence 35666544332 2346779999999854 3345778899998887766 554443 3467899999999999999
Q ss_pred EEEEEccCcc-CCCccee
Q psy2776 115 RVAAVNAIGT-GPASHNT 131 (803)
Q Consensus 115 ~c~a~~~~g~-~~~s~~~ 131 (803)
+++|.+..|. +..+...
T Consensus 81 rVra~~~~G~wS~wS~~~ 98 (103)
T d1f6fb2 81 QTRCKPDHGYWSRWSQES 98 (103)
T ss_dssp EEEEEESSSCCCCCCCCE
T ss_pred EEEEEeCCCCCCCCcCce
Confidence 9999998885 5555443
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.001 Score=53.45 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=66.9
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCC---CCCCeEEEEEEeecCCC-ceeEEEeeeeeeEEEEeccccCCeEEEEEEE
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDD---GHSPVTGYVLESHDKDE-FMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~---g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a 118 (803)
|+.||....+......++.|+|.+|... +...+..|.+..+..+. ...|.........++|.+|.+...|.|+++|
T Consensus 1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 80 (100)
T d1x5ja1 1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMV 80 (100)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEE
T ss_pred CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEE
Confidence 3455666677778899999999987542 23455667776654333 3345555556788999999999999999999
Q ss_pred EccCccCCCcceeeEE
Q psy2776 119 VNAIGTGPASHNTRYV 134 (803)
Q Consensus 119 ~~~~g~~~~s~~~~~~ 134 (803)
.+..|.+..+......
T Consensus 81 ~n~~g~s~~S~~~~~~ 96 (100)
T d1x5ja1 81 TKGRRSSTWSMTAHGT 96 (100)
T ss_dssp ECSSCBCCCCCCCCEE
T ss_pred EeCCcCcCCCCeEEEE
Confidence 9999998777665443
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.11 E-value=0.00095 Score=55.64 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=45.4
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--ee---c----c----------ceeEE--Ee--cCeeEEEEecCC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SL---I----K----------GRNIT--YE--NNVARFTVVNCS 205 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~---~----~----------~~~~~--~~--~~~~~L~i~~v~ 205 (803)
+..+...+|++++|.|.+.+.. ...+.||+.. .. + . ..++. .+ .+...|+|.+++
T Consensus 8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~ 87 (120)
T d1ypzf1 8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE 87 (120)
T ss_dssp CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence 3456667899999999986532 3458999832 11 1 0 01111 11 235679999999
Q ss_pred CCcceEEEEEEEc
Q psy2776 206 ESSEGRYTCKATN 218 (803)
Q Consensus 206 ~~d~G~Y~C~a~n 218 (803)
.+|+|.|.|....
T Consensus 88 ~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 88 EEDEAIYYCSYGE 100 (120)
T ss_dssp GGGCSEEEEEECC
T ss_pred cccceeEEEEEcC
Confidence 9999999997653
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0018 Score=53.06 Aligned_cols=76 Identities=24% Similarity=0.509 Sum_probs=56.0
Q ss_pred cCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc--eeEEEee--eeeeEEEEeccccCCeEEEEEEEEccCccCCCccee
Q psy2776 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIE--TTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNT 131 (803)
Q Consensus 56 ~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~ 131 (803)
...++.|+|.+|...+ .++..|.+.+...... ..|.... .....+.|.+|.+...|.|+++|.|..|.+..+...
T Consensus 26 ~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v 104 (111)
T d1x5ka1 26 KPKTIIVNWQPPSEAN-GKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 104 (111)
T ss_dssp CTTCEEEEEECCSCCS-SCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEEECSSCBCCCCCCE
T ss_pred CCCEEEEEEEccccCC-CceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEEEcCCCCcCCCCCE
Confidence 4568999999987654 5788888876543322 2333333 235689999999999999999999999988777654
Q ss_pred e
Q psy2776 132 R 132 (803)
Q Consensus 132 ~ 132 (803)
.
T Consensus 105 ~ 105 (111)
T d1x5ka1 105 Q 105 (111)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.11 E-value=0.00083 Score=54.55 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=48.3
Q ss_pred cceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEee--CceEEEEEecC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v 735 (803)
+....+.+|++++|+|++.|+... .+.|++. |+-+ . ...|+.+..| .+...|.|.++
T Consensus 7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L 86 (117)
T d1mfah1 7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL 86 (117)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence 344667889999999999986443 4668763 2211 1 1235666665 44577999999
Q ss_pred CCCCCceeEEEEE
Q psy2776 736 DSETDAGDYKVVA 748 (803)
Q Consensus 736 ~~~~D~G~Y~C~a 748 (803)
+.+|.+.|.|..
T Consensus 87 -~~eDtAvYYCAr 98 (117)
T d1mfah1 87 -TSEDSAVYYCTR 98 (117)
T ss_dssp -CGGGCEEEEEEE
T ss_pred -CCCcceEEEEec
Confidence 789999999953
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=9.8e-05 Score=59.11 Aligned_cols=89 Identities=9% Similarity=0.089 Sum_probs=55.7
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.+...+. ..|..|++|+|.|... .+...|.++|+|.......+. ....+..+.+.|.++ +.+|+|.|+|.-...
T Consensus 4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v-~~~~~G~Y~C~y~~~ 79 (96)
T d1ugna1 4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSI-TWEHTGRYRCYYGSD 79 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSC-CGGGCEEEEEEEEET
T ss_pred CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEec-CHHHCCeEEEEEeCC
Confidence 454544443 5688999999999864 566678889977532100000 001234468999999 799999999987643
Q ss_pred -Ccce--eeeEEEEEE
Q psy2776 752 -LGSA--THGARVTVD 764 (803)
Q Consensus 752 -~G~~--~~~~~l~V~ 764 (803)
.+.. +..++|.|.
T Consensus 80 ~~~~S~~Sd~leL~Vt 95 (96)
T d1ugna1 80 TAGRSESSDPLELVVT 95 (96)
T ss_dssp TTEECCCCCCEEEEEE
T ss_pred CCCccccCCCEEEEEe
Confidence 2222 344455553
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.10 E-value=0.0011 Score=53.90 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=49.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
....+.+|++++|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++
T Consensus 7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL- 85 (117)
T d1um5h1 7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL- 85 (117)
T ss_dssp CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC-
T ss_pred CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc-
Confidence 34568899999999999987554 5788874 221 11 1246666665 44677999999
Q ss_pred CCCCceeEEEEEE
Q psy2776 737 SETDAGDYKVVAT 749 (803)
Q Consensus 737 ~~~D~G~Y~C~a~ 749 (803)
+.+|++.|.|...
T Consensus 86 ~~eDtAvYYCAr~ 98 (117)
T d1um5h1 86 TSEDSAVYYCARS 98 (117)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEEeec
Confidence 7899999999643
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.10 E-value=0.00052 Score=55.51 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=40.2
Q ss_pred ecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeCce---EEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 685 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGEN---IILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..++.++|.|.+.|+ |.. .|.|..++........-....++.. +.|.|..- .-+.+.|+|.+....+...
T Consensus 18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~--~w~~~~ytC~V~H~~~~~~ 92 (102)
T d1mjuh2 18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSS--TWPSQSITCNVAHPASSTK 92 (102)
T ss_dssp ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTT--TTTTSCCEEEEEEGGGTEE
T ss_pred cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehh--HcCCceEEEEEEECCCCEE
Confidence 457899999999997 543 7999887743221111112233332 34555543 2236789999998766543
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.10 E-value=0.00079 Score=55.37 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=50.8
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++ .
T Consensus 8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL-~ 86 (124)
T d1zvya1 8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV-K 86 (124)
T ss_dssp CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC-C
T ss_pred CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccc-c
Confidence 3467889999999999987554 5788873 211 11 1246677766 35677999999 7
Q ss_pred CCCceeEEEEEEcc
Q psy2776 738 ETDAGDYKVVATNE 751 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~ 751 (803)
.+|++.|.|.....
T Consensus 87 ~eDtAvYYCAr~~~ 100 (124)
T d1zvya1 87 SEDTAIYTCGATRK 100 (124)
T ss_dssp GGGCEEEEEEECSS
T ss_pred CCcceEEEEeeccc
Confidence 89999999977543
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00054 Score=57.20 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=47.4
Q ss_pred cceeEEecCCeEEEEEEEeecCCC---ceEEeeCC--eec--c-----C------CCC--eEEEeeCceEEEEEecCCCC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAP---SIVWFRNN--KPL--L-----S------SPK--KREIFDGENIILELKEADSE 738 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~~--~~l--~-----~------~~~--~~~~~~~~~~~L~i~~v~~~ 738 (803)
|..+.+.+|+.++|.|.....-.+ .+.|++.. +.+ . . ..+ .....++..+.|.|.++ +.
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~ 84 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL-RA 84 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSC-CG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecc-cc
Confidence 334567889999999998543222 48899842 111 0 0 001 11223455789999999 79
Q ss_pred CCceeEEEEEEcc
Q psy2776 739 TDAGDYKVVATNE 751 (803)
Q Consensus 739 ~D~G~Y~C~a~N~ 751 (803)
+|+|.|.|.+...
T Consensus 85 ~Dsa~YyCa~~~~ 97 (118)
T d1i8lc_ 85 MDTGLYICKVELM 97 (118)
T ss_dssp GGCEEEEEEEEEE
T ss_pred CCCEEEEEeEecc
Confidence 9999999988753
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.09 E-value=0.00077 Score=54.34 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=50.0
Q ss_pred ccceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-C----------CCCeEEEee--CceEEEEEec
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-S----------SPKKREIFD--GENIILELKE 734 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-~----------~~~~~~~~~--~~~~~L~i~~ 734 (803)
.+....+.+|+++.|+|++.|+... .+.|++. |+- |. . ..|+.+..| .+...|.|.+
T Consensus 6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s 85 (116)
T d1mjuh1 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (116)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence 3345678899999999999997555 4778872 211 11 1 236667665 3457799999
Q ss_pred CCCCCCceeEEEEE
Q psy2776 735 ADSETDAGDYKVVA 748 (803)
Q Consensus 735 v~~~~D~G~Y~C~a 748 (803)
+ +.+|.+.|.|..
T Consensus 86 L-~~eDtAvYYCAr 98 (116)
T d1mjuh1 86 L-TSDDSAVYYCAN 98 (116)
T ss_dssp C-CGGGCEEEEEEE
T ss_pred c-CCCCceEEEEcc
Confidence 9 789999999953
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00065 Score=55.21 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=46.0
Q ss_pred ecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCe----EEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 685 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK----REIFDGE---NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~----~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..++.++|.|.+.|+ |. ..|.|++||..+..+... ....++. .+.|.|..- .-.....|+|.+.......
T Consensus 17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~-~W~~g~~ytC~V~H~~l~~ 95 (105)
T d1fp5a2 17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRA-EWEQKDEFICRAVHEAASP 95 (105)
T ss_dssp SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHH-HHTTGGGEEEEEECTTSTT
T ss_pred hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHH-HcCCCCEEEEEEEECCCCC
Confidence 346789999999986 54 489999999987543211 1112233 234666543 1234567999999865544
Q ss_pred eeeE
Q psy2776 756 THGA 759 (803)
Q Consensus 756 ~~~~ 759 (803)
...+
T Consensus 96 ~~~~ 99 (105)
T d1fp5a2 96 SQTV 99 (105)
T ss_dssp TTEE
T ss_pred CeEE
Confidence 3333
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.09 E-value=0.0011 Score=52.89 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=50.1
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-------------CCCCeEEEee--CceEEEEEecC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-------------SSPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-------------~~~~~~~~~~--~~~~~L~i~~v 735 (803)
...+.+|++++|+|++.|.... .+.|++. |+- |. ...|+.+..| .+...|.|.++
T Consensus 9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL 88 (109)
T d2ck0h1 9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL 88 (109)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence 4568899999999999986554 5778773 211 11 1236777776 45677999999
Q ss_pred CCCCCceeEEEEEEc
Q psy2776 736 DSETDAGDYKVVATN 750 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N 750 (803)
+.+|++.|.|.-.+
T Consensus 89 -~~eDTAvYYCAr~~ 102 (109)
T d2ck0h1 89 -KTEDTGIYYCVRGR 102 (109)
T ss_dssp -CGGGCEEEEEEEEC
T ss_pred -CHhHCEEEEEEEcC
Confidence 79999999997543
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0015 Score=51.47 Aligned_cols=84 Identities=24% Similarity=0.426 Sum_probs=62.7
Q ss_pred CCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCC-ceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE-FMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 45 ~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
++|..+.+......++.|+|.+|.. .+.+|.++++.... .............+.|.+|.+...|.|+++|.|..|
T Consensus 3 ~aP~n~~~~~~s~~si~l~W~~p~~----~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G 78 (92)
T d1qg3a1 3 GAPQNPNAKAAGSRKIHFNWLPPSG----KPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG 78 (92)
T ss_dssp CCCEEEEEEECSTTCEEEEEECCSS----CCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSSC
T ss_pred CcCCCCEEEEccCCEEEEEEEecCC----CccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCCc
Confidence 4556666777788999999998742 45678887654332 223344445578899999999999999999999999
Q ss_pred cCCCcceee
Q psy2776 124 TGPASHNTR 132 (803)
Q Consensus 124 ~~~~s~~~~ 132 (803)
.+..+....
T Consensus 79 ~g~~S~~~~ 87 (92)
T d1qg3a1 79 EGPYSSLVS 87 (92)
T ss_dssp BCCCCCCEE
T ss_pred CcCCCCCEE
Confidence 987776543
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.08 E-value=0.00063 Score=55.20 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=48.8
Q ss_pred cceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------ccC-----------CCCeEEEee--CceEEEEEecC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-----------SPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~~-----------~~~~~~~~~--~~~~~L~i~~v 735 (803)
.....+.+|+++.|+|++.|+... .+.|++. |+- |.. ..|+.+..| .+...|.|.++
T Consensus 7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL 86 (118)
T d2jelh1 7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence 334568899999999999997665 4778873 221 111 136666665 44577999999
Q ss_pred CCCCCceeEEEE
Q psy2776 736 DSETDAGDYKVV 747 (803)
Q Consensus 736 ~~~~D~G~Y~C~ 747 (803)
+.+|++.|.|.
T Consensus 87 -~~eDTAvYYCA 97 (118)
T d2jelh1 87 -TSEDSAIYYCA 97 (118)
T ss_dssp -CGGGCEEEEEE
T ss_pred -ccCcceeeeEE
Confidence 78999999994
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.07 E-value=0.00072 Score=54.96 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=47.0
Q ss_pred eeEEecCCeEEEEEEEeecCC--CceEEeeC--Cee------cc-C----------CCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPA--PSIVWFRN--NKP------LL-S----------SPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--~~~------l~-~----------~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|.-. -.+.|++. |+. |. . ..|+.+..| .+...|.|.++ +
T Consensus 9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l-~ 87 (115)
T d1f3dh1 9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSL-T 87 (115)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSC-C
T ss_pred CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeec-C
Confidence 345788999999999998643 35788873 221 11 1 135666655 34567999999 7
Q ss_pred CCCceeEEEE
Q psy2776 738 ETDAGDYKVV 747 (803)
Q Consensus 738 ~~D~G~Y~C~ 747 (803)
.+|++.|.|.
T Consensus 88 ~eDtAvYYCA 97 (115)
T d1f3dh1 88 FEDSAVYYCA 97 (115)
T ss_dssp GGGCEEEEEE
T ss_pred cCCcEEEEEe
Confidence 9999999994
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.06 E-value=0.001 Score=54.13 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=49.3
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|.|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL-~ 87 (119)
T d1rz7h1 9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL-R 87 (119)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc-C
Confidence 4567889999999999997554 5788773 111 11 1246777765 45677999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (119)
T d1rz7h1 88 SEDTAVYYCAAD 99 (119)
T ss_dssp GGGCEEEEEEEC
T ss_pred cccceEEEEeec
Confidence 899999999654
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0023 Score=51.66 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=59.8
Q ss_pred CCCCCCCceEE----EecCCeEEEEeeCCCC---CCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEE
Q psy2776 43 APGAPDTPEIV----GRSDSSVTLHWRPPQD---DGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFR 115 (803)
Q Consensus 43 ~p~~p~~~~~~----~~~~~~v~l~c~~p~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 115 (803)
.|+||..+.+. .....++.|+|.+|.. .+...+..|.++++..+..............+.|.+|.+...|.++
T Consensus 2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r 81 (104)
T d3d48r2 2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQ 81 (104)
T ss_dssp CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEETCSEEEECC--CCCEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccccccEEEECCCCCCCEEEEE
Confidence 46666555443 2235679999999864 2344566788887776665333334444688999999999999999
Q ss_pred EEEEccCcc-CCCcceee
Q psy2776 116 VAAVNAIGT-GPASHNTR 132 (803)
Q Consensus 116 c~a~~~~g~-~~~s~~~~ 132 (803)
++|.+..|. +..|....
T Consensus 82 VrA~n~~G~ws~wS~~~~ 99 (104)
T d3d48r2 82 VRCKPDHGYWSAWSPATF 99 (104)
T ss_dssp EEEEESSSCCCCCCCCEE
T ss_pred EEEEeCCCCCCCCcCCEE
Confidence 999999987 66665543
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.001 Score=55.55 Aligned_cols=90 Identities=28% Similarity=0.448 Sum_probs=63.7
Q ss_pred CCCCceEEEecCCeEEEEeeCCCC-CCCCCeEEEEEEeecCCCceeEEE--eeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQD-DGHSPVTGYVLESHDKDEFMVWNK--IETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~-~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
+|....+......++.|+|.+|.. ..+..+.+|.+.++..+....+.. .......+.|.+|.+...|.++++|.|..
T Consensus 14 ~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 93 (119)
T d1x5ha1 14 APQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTIN 93 (119)
T ss_dssp CCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECEEEETT
T ss_pred CCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEEEEcCC
Confidence 344445555667899999998753 334578899988776555422222 22236789999999999999999999999
Q ss_pred ccCCCcceeeEEE
Q psy2776 123 GTGPASHNTRYVV 135 (803)
Q Consensus 123 g~~~~s~~~~~~~ 135 (803)
|.+..+......+
T Consensus 94 G~G~~S~~~~~~T 106 (119)
T d1x5ha1 94 GTGPATDWLSAET 106 (119)
T ss_dssp EEEEECCCEEEEC
T ss_pred cCCCCCCCEEEEe
Confidence 9887666554433
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.06 E-value=0.0015 Score=51.28 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=41.8
Q ss_pred ecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 685 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..++.++|.|.+.|+ |.. .|+|.+||.++.... ..... ++.........+ ...+...|+|++.-.
T Consensus 13 ~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v-~~~~~~~ytC~V~H~ 81 (91)
T d3frua1 13 GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEV-KRGDEHHYQCQVEHE 81 (91)
T ss_dssp CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEE-ETTCGGGEEEEEECT
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEE-CCCCCCEEEEEEEeC
Confidence 345689999999997 654 799999999875432 22222 233322222233 345667899999864
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.05 E-value=0.00067 Score=54.52 Aligned_cols=67 Identities=10% Similarity=0.237 Sum_probs=41.9
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcE-EEEecCCe--EEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKAC-RIFIDEET--STIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~-~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
..|+..+|.|.+.|+ |. ..++|++||+.+..+... .....+++ .......+...+...|+|.+.+..
T Consensus 17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s 88 (101)
T d1fnga1 17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWG 88 (101)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEECC
Confidence 346778899999997 43 589999999988754211 11112221 122222333455668999999874
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0028 Score=46.42 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=43.1
Q ss_pred ecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 685 KEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
..|..+.|+|.....+.+ .-.|.|||+.|..+.. .....++.|.. .+|+|.|.|+--+
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~---~D~SGeY~CVFl~ 69 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS---DDQWGEYSCVFLP 69 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG---GGCCEEEEEEEES
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec---CCCCceEEEEEcC
Confidence 558899999999765443 4789999999986532 23445566653 5899999999654
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.05 E-value=0.00086 Score=54.04 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=48.5
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L-~ 87 (114)
T d1indh1 9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL-R 87 (114)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee-c
Confidence 3567899999999999987554 4778873 211 11 1246667765 34577999999 7
Q ss_pred CCCceeEEEEE
Q psy2776 738 ETDAGDYKVVA 748 (803)
Q Consensus 738 ~~D~G~Y~C~a 748 (803)
.+|.+.|.|..
T Consensus 88 ~eDtAvYYCA~ 98 (114)
T d1indh1 88 SEDTALYFCAS 98 (114)
T ss_dssp GGGCEEEEEEC
T ss_pred cCcccEEEECC
Confidence 99999999953
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.04 E-value=0.0034 Score=50.32 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=45.5
Q ss_pred EecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEEEe--eCce---EEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 684 VKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIF--DGEN---IILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~--~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
+..|+..+|.|.+.|+ |. ..|.|.+||..+.......... ++.. +.|.| ..+|...|+|.+.-..-...
T Consensus 15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v----~~~~~~~ytC~V~H~~l~~p 90 (103)
T d1hdma1 15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF----TPEPSDIFSCIVTHEPDRYT 90 (103)
T ss_dssp CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE----CCCTTCCEEEEEEETTTTEE
T ss_pred hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE----ecCCCCEEEEEEEeCCCCCC
Confidence 4568889999999997 54 4799999999876444333322 2222 23444 34556679999998644333
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.04 E-value=0.001 Score=54.39 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=49.7
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+. |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL-~ 87 (121)
T d1ol0a_ 9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSL-R 87 (121)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeec-c
Confidence 3567899999999999986433 4778763 221 11 1236667766 44678999999 7
Q ss_pred CCCceeEEEEEEcc
Q psy2776 738 ETDAGDYKVVATNE 751 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~ 751 (803)
.+|++.|.|.....
T Consensus 88 ~eDtAvYYCAr~~~ 101 (121)
T d1ol0a_ 88 AEDTAVYYCAREPR 101 (121)
T ss_dssp GGGCEEEEEEECCS
T ss_pred cccceEEEEEEecC
Confidence 89999999965543
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.04 E-value=0.0014 Score=54.75 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=48.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Cee-------------ec-C---CCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAE-------------IT-D---SKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~-------------i~-~---~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
.....+|++++|.|.+.|.. ...+.|++. |+. .. . ..++.+..+ .....|.|.++..
T Consensus 10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~ 89 (123)
T d1hxmb1 10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK 89 (123)
T ss_dssp EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence 45677899999999998754 346789863 111 11 1 135655543 3457899999999
Q ss_pred CcCeEEEEEEEc
Q psy2776 574 ADTSTYTVTATN 585 (803)
Q Consensus 574 ~dsG~Y~C~a~n 585 (803)
+|+|.|.|.+..
T Consensus 90 ~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 90 QDIATYYCALWE 101 (123)
T ss_dssp GGCEEEEEEEEE
T ss_pred ccCcEEEEeeeC
Confidence 999999998753
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.04 E-value=0.0011 Score=53.82 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=47.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
....+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++
T Consensus 8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L- 86 (118)
T d1ct8b1 8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSL- 86 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSC-
T ss_pred CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccccc-
Confidence 34678889999999999986543 4667762 211 11 1235666665 34677999999
Q ss_pred CCCCceeEEEEE
Q psy2776 737 SETDAGDYKVVA 748 (803)
Q Consensus 737 ~~~D~G~Y~C~a 748 (803)
+.+|.+.|.|..
T Consensus 87 ~~eDtAvYYCAr 98 (118)
T d1ct8b1 87 TTEDSAIYYCAR 98 (118)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEee
Confidence 789999999954
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.03 E-value=0.0012 Score=53.69 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=48.7
Q ss_pred eeEEecCCeEEEEEEEeecCCC---ceEEeeC--Ceecc----------------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP---SIVWFRN--NKPLL----------------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~--~~~l~----------------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|+... .+.|++. |+-++ ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL-~ 87 (119)
T d1ncwh1 9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSV-T 87 (119)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccc-c
Confidence 3567889999999999998653 3678873 32211 1246666665 44677999999 7
Q ss_pred CCCceeEEEEE
Q psy2776 738 ETDAGDYKVVA 748 (803)
Q Consensus 738 ~~D~G~Y~C~a 748 (803)
.+|.+.|.|..
T Consensus 88 ~eDTAvYYCAr 98 (119)
T d1ncwh1 88 TEDTATYYCAG 98 (119)
T ss_dssp GGGCEEEEEEE
T ss_pred cCCceEEEEeE
Confidence 99999999953
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.03 E-value=0.00093 Score=53.18 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=43.6
Q ss_pred cCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEee--CceEEEEEecCCCCCCce
Q psy2776 686 EKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFD--GENIILELKEADSETDAG 742 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v~~~~D~G 742 (803)
+|++++|+|++.|.... .+.|++. |+.+ . ...|+.+..| .+...|.|.++ +.+|.+
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL-~~eDTA 79 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL-TSEDSA 79 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC----CCS
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeec-cccccE
Confidence 58999999999997554 4788873 2221 1 1245666655 44567999999 799999
Q ss_pred eEEEEEEccCc
Q psy2776 743 DYKVVATNELG 753 (803)
Q Consensus 743 ~Y~C~a~N~~G 753 (803)
.|.|......+
T Consensus 80 vYYCAr~~~~~ 90 (103)
T d1oari_ 80 VYYCARMWYYG 90 (103)
T ss_dssp EEEEEEEECSS
T ss_pred EEEeEEECCCC
Confidence 99998655444
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.03 E-value=0.001 Score=55.00 Aligned_cols=75 Identities=4% Similarity=0.064 Sum_probs=50.7
Q ss_pred cccCCceeeeccccceeEEEEecCCceeeEEeec--Ceecc---------------ccceeE-EEEcCceeEEEEeecCC
Q psy2776 309 LSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK--GKEIK---------------ESARHI-ITSRGTQRKLVIKRVTQ 370 (803)
Q Consensus 309 ~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~--g~~l~---------------~~~~~~-~~~~~~~~~l~i~~~~~ 370 (803)
+.+.|......+|++++|.|........+.|||- |..+. ...... ....+....|.|.++..
T Consensus 3 V~QsP~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 82 (113)
T d1j8he1 3 VTQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST 82 (113)
T ss_dssp EEESCSEEEEETTCCEEECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred EEccCCEEEECCCCCEEEEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence 3445677778889999999987444567889983 22111 001122 22234457899999999
Q ss_pred CCCccEEEEEecc
Q psy2776 371 DDETDIGVLALNV 383 (803)
Q Consensus 371 ~d~g~y~c~~~~~ 383 (803)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (113)
T d1j8he1 83 NQTSMYLCASSST 95 (113)
T ss_dssp GGCEEEEEEEECT
T ss_pred CCcccEEeeEccC
Confidence 9999999987653
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.03 E-value=0.0017 Score=52.98 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=48.9
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|.... .+.|++. |+- |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L-~ 87 (123)
T d1mqkh_ 9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSL-K 87 (123)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeee-c
Confidence 3567889999999999987554 4678873 211 11 1235667665 34567999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDtAvYYCAr~ 99 (123)
T d1mqkh_ 88 SEDTAMYYCVRH 99 (123)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCcccceeEEec
Confidence 899999999654
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.03 E-value=0.00073 Score=54.74 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=48.6
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c----------CCCCeEEEee--CceEEEEEecCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L----------SSPKKREIFD--GENIILELKEADSE 738 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~----------~~~~~~~~~~--~~~~~L~i~~v~~~ 738 (803)
...+.+|++++|+|++.|+... .+.|++. |+-+ . ...|+.+..| .+...|.|.++ +.
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l-~~ 87 (116)
T d1a2yb_ 9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSL-HT 87 (116)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSC-CG
T ss_pred CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeee-ee
Confidence 3567889999999999987554 4778874 2211 1 1235566654 34577999999 79
Q ss_pred CCceeEEEEEE
Q psy2776 739 TDAGDYKVVAT 749 (803)
Q Consensus 739 ~D~G~Y~C~a~ 749 (803)
+|.+.|.|.-.
T Consensus 88 eDTAvYYCAr~ 98 (116)
T d1a2yb_ 88 DDTARYYCARE 98 (116)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEEEEEe
Confidence 99999999754
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.02 E-value=0.0013 Score=54.06 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=50.1
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|.... .+.|++. |+. |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L-~ 87 (126)
T d1dfbh1 9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL-R 87 (126)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee-c
Confidence 3567889999999999987544 4778873 211 11 1245667666 34577999999 7
Q ss_pred CCCceeEEEEEEcc
Q psy2776 738 ETDAGDYKVVATNE 751 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~ 751 (803)
.+|.+.|.|.....
T Consensus 88 ~eDtavYYCAr~~~ 101 (126)
T d1dfbh1 88 AEDMALYYCVKGRD 101 (126)
T ss_dssp GGGCEEEEEEEEEC
T ss_pred cCcceEEEEEeccC
Confidence 99999999976543
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.02 E-value=0.00072 Score=55.78 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=49.5
Q ss_pred ccCCceeeeccccceeEEEEecCCceeeEEeec--Ceecc------cc---------ceeEE-EEcCceeEEEEeecCCC
Q psy2776 310 SKLPSVTLVPHLGDATFQVELSSPDIQVKWLKK--GKEIK------ES---------ARHII-TSRGTQRKLVIKRVTQD 371 (803)
Q Consensus 310 ~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~--g~~l~------~~---------~~~~~-~~~~~~~~l~i~~~~~~ 371 (803)
.+.|....+.+|++++|.|....-...+.||+- |+.+. .. .++.. ........|.|.++.++
T Consensus 3 tQ~P~~~~~~~G~svtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (112)
T d2bnub1 3 TQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS 82 (112)
T ss_dssp EEECSEEEEETTCCEEEEEEESSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG
T ss_pred EECCCeEEECCCCCEEEEEEEECCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH
Confidence 344666778889999999998544567999983 32211 00 11111 12333467999999999
Q ss_pred CCccEEEEEecc
Q psy2776 372 DETDIGVLALNV 383 (803)
Q Consensus 372 d~g~y~c~~~~~ 383 (803)
|+|.|.|.+...
T Consensus 83 DsavYyCA~~~~ 94 (112)
T d2bnub1 83 QTSVYFCASSYV 94 (112)
T ss_dssp GCEEEEEEEECS
T ss_pred HCEEEEEeecCC
Confidence 999999987643
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.02 E-value=0.002 Score=51.45 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=43.3
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCC-e-EEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEE-T-STIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~-~-~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
..|+..+|.|.+.|+ |. ..++|++||+.+..+.. ......++ . .......+..++...|+|.+.+..-
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl 89 (99)
T d1uvqa1 17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGL 89 (99)
T ss_dssp CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 456788999999997 33 57899999998875421 11112222 1 2223334445566789999998743
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.01 E-value=0.0014 Score=53.64 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=48.7
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+.++|.|++.|.... .+.|++. |+.+ . ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L-~ 87 (121)
T d1j05b_ 9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL-T 87 (121)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccccc-C
Confidence 4568899999999999986443 5778873 2211 1 1235666655 34677999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|++.|.|...
T Consensus 88 ~eDtAvYYCAr~ 99 (121)
T d1j05b_ 88 SEDTAVYYCAPF 99 (121)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCcceEEEeEee
Confidence 999999999754
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0017 Score=51.35 Aligned_cols=68 Identities=13% Similarity=0.284 Sum_probs=46.4
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
.|+.++|.|.+.|+ |. ..|+|++||..+............++ .......+...+...|+|.+.+..-.
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~ 85 (94)
T d1t7va1 14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLA 85 (94)
T ss_dssp TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCC
Confidence 47789999999996 44 47899999998775433333333222 33444455666777899999987543
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.00 E-value=0.0011 Score=54.52 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=49.2
Q ss_pred cceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v 735 (803)
+....+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++
T Consensus 7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L 86 (127)
T d1n0xh1 7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL 86 (127)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence 334678899999999999996554 4778873 221 11 1246677766 34677999999
Q ss_pred CCCCCceeEEEE
Q psy2776 736 DSETDAGDYKVV 747 (803)
Q Consensus 736 ~~~~D~G~Y~C~ 747 (803)
+.+|.+.|.|.
T Consensus 87 -~~eDtAvYYCA 97 (127)
T d1n0xh1 87 -RSADTAVYYCA 97 (127)
T ss_dssp -CGGGCEEEEEE
T ss_pred -CCCCceEEEEE
Confidence 78999999995
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.99 E-value=0.0016 Score=52.66 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=49.1
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..|. +...|.|.++ +
T Consensus 9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L-~ 87 (117)
T d1jnhb1 9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL-T 87 (117)
T ss_dssp CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc-C
Confidence 4567889999999999997555 4778872 111 11 12467777763 4577999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (117)
T d1jnhb1 88 SEDSAVYSCSRG 99 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeec
Confidence 899999999543
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0019 Score=55.42 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCC--------CCeEEEEEEeecCCCceeEEEee-eeeeEEEEeccccCCeEE
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGH--------SPVTGYVLESHDKDEFMVWNKIE-TTSTTYEVTKLTTKHEYM 113 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~ 113 (803)
.|..+..|.+..+...++.|+|.+|....+ ..+..|.+...+......|..+. .....+.|.+|++...|.
T Consensus 17 ~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~P~t~Y~ 96 (137)
T d1wk0a_ 17 LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYH 96 (137)
T ss_dssp HTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEEC
T ss_pred CCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECCCCCCcEEE
Confidence 455566677777889999999999876443 24556777776655544554443 246789999999999999
Q ss_pred EEEEEEccCccCCCcceeeEEEEcC-CCCCCCCee
Q psy2776 114 FRVAAVNAIGTGPASHNTRYVVVKA-PVDAEAPVI 147 (803)
Q Consensus 114 y~c~a~~~~g~~~~s~~~~~~~~~~-~~~~~~p~i 147 (803)
|+++|.|..|.+..+......+... |..+.+|.+
T Consensus 97 f~V~A~n~~G~g~~S~~~~~~T~~~~P~~p~~p~i 131 (137)
T d1wk0a_ 97 AKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRI 131 (137)
T ss_dssp EEEEEEETTEECCCCCCCCEECCCSSSCCCSCSCC
T ss_pred EEEEEEcCCcccCCCCCEEEECCCCCCCCCCCCEE
Confidence 9999999999988887666555433 333344544
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00093 Score=55.69 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=44.7
Q ss_pred CeeeecCCcEEEEEEECccCCC---eeEEEEcCee--cc--------c-------e---eEEEecCeeEEEEecCCCCcc
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTP---DIKWYKDDSL--IK--------G-------R---NITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p---~i~W~~~~~~--~~--------~-------~---~~~~~~~~~~L~i~~v~~~d~ 209 (803)
.+.+.+|+.++|.|.......+ .+.|+|.... .. . . .....+....|.|.+++.+|+
T Consensus 8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 87 (118)
T d1i8lc_ 8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT 87 (118)
T ss_dssp EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence 3556789999999998643222 4889984421 10 0 0 011233467899999999999
Q ss_pred eEEEEEEEc
Q psy2776 210 GRYTCKATN 218 (803)
Q Consensus 210 G~Y~C~a~n 218 (803)
|.|.|.+..
T Consensus 88 a~YyCa~~~ 96 (118)
T d1i8lc_ 88 GLYICKVEL 96 (118)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeEec
Confidence 999998764
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=96.97 E-value=0.0024 Score=52.67 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=49.7
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..|. +...|.|.++ +
T Consensus 9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L-~ 87 (135)
T d1ieha_ 9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSL-K 87 (135)
T ss_dssp CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESC-C
T ss_pred CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeee-C
Confidence 3567889999999999987544 4778873 211 11 12466777663 4577999999 7
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|.+.|.|....
T Consensus 88 ~eDTAvYYCAr~~ 100 (135)
T d1ieha_ 88 SEDTAVYYCAKYS 100 (135)
T ss_dssp SSSCEEEEEEEBS
T ss_pred cccceeeEEEEec
Confidence 8999999997654
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.97 E-value=0.0026 Score=49.49 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=61.3
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccC
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~ 125 (803)
+|....+......++.|+|.+|. ..+.+|.+.+...+....+..+......+.|.+|.+...|.+++.+.+..|.+
T Consensus 2 aP~~l~v~~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s 77 (87)
T d1qr4a1 2 NPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKS 77 (87)
T ss_dssp CCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSCBC
T ss_pred cCcCcEEEEecCCEEEEEEECCC----CCcceeEEEeecCCcceeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCCCc
Confidence 34444555567889999999874 34678899888877665555666667899999999999999999999988876
Q ss_pred CCc
Q psy2776 126 PAS 128 (803)
Q Consensus 126 ~~s 128 (803)
.+.
T Consensus 78 ~~~ 80 (87)
T d1qr4a1 78 KPT 80 (87)
T ss_dssp CCE
T ss_pred cCE
Confidence 543
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.97 E-value=0.0014 Score=54.00 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=50.2
Q ss_pred eeEEecCCeEEEEEEEeecCCCc--eEEeeC--Ceec---------------c--CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPS--IVWFRN--NKPL---------------L--SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~--v~W~~~--~~~l---------------~--~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+.... +.|++. |+-+ . ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL-~ 87 (128)
T d2nxyd1 9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNL-R 87 (128)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeec-c
Confidence 45678899999999999976553 567652 1111 1 2356777776 45677999999 7
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|.+.|.|....
T Consensus 88 ~eDTA~YYCAr~~ 100 (128)
T d2nxyd1 88 SDDTAVYFCAGVY 100 (128)
T ss_dssp GGGCEEEEEEEEE
T ss_pred ccCceEEEEeEEe
Confidence 8999999998664
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=96.96 E-value=0.002 Score=51.31 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=44.3
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..++.++|.|.+.|+ |. ..++|++||+.+..+.. ......+++ .......+..++...|+|.+.+....
T Consensus 15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~ 88 (98)
T d1hdmb1 15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP 88 (98)
T ss_dssp SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence 346788999999997 33 58899999998865422 122222221 22222334456666899999997544
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.95 E-value=0.0024 Score=49.57 Aligned_cols=79 Identities=19% Similarity=0.340 Sum_probs=62.2
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccC
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~ 125 (803)
+|....+......++.|+|.+|. ..+.+|.+.++..+....+..+......+.|.+|.+...|.+++.+.+..|.+
T Consensus 3 ~P~nl~v~~~~~~s~~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s 78 (86)
T d1tdqa3 3 SPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQS 78 (86)
T ss_dssp CCEEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEEEEEESSCSEEEECCCCTTCCEEEEEEEEETTEEC
T ss_pred cCCCCEEEEecCCEEEEEEeCCC----CCccceEEEEecccccceEEEeCCCccEEEECCCccccEEEEEEEEEcCCCEE
Confidence 34445556667899999999874 35778999888777665666666678899999999999999999999988776
Q ss_pred CCc
Q psy2776 126 PAS 128 (803)
Q Consensus 126 ~~s 128 (803)
.++
T Consensus 79 ~p~ 81 (86)
T d1tdqa3 79 LES 81 (86)
T ss_dssp CCE
T ss_pred CCE
Confidence 543
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.002 Score=53.42 Aligned_cols=88 Identities=25% Similarity=0.371 Sum_probs=62.0
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCC-CCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEcc
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQ-DDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNA 121 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~ 121 (803)
+|..|............+.|+|.++. ...+..+.+|.++++..+.. .|. .......+.+.+|.+...|.|+++|.|.
T Consensus 17 ~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~-~~~-~~~~~~~~~~~~L~p~t~Y~~~V~A~n~ 94 (117)
T d1wj3a_ 17 PPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQN-NVQ-VLNTNKTSAELVLPIKEDYIIEVKATTD 94 (117)
T ss_dssp CCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCS-SCE-EEEESSSEEEEECCCSSCEEEEEEEEES
T ss_pred CcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCC-cee-eeeceeeEEEeeccCCcEEEEEEEEEcC
Confidence 34333333344456889999999753 33456899999988765554 333 3334556788899999999999999999
Q ss_pred CccCCCcceee
Q psy2776 122 IGTGPASHNTR 132 (803)
Q Consensus 122 ~g~~~~s~~~~ 132 (803)
+|.+..+....
T Consensus 95 ~G~G~~S~~v~ 105 (117)
T d1wj3a_ 95 GGDGTSSEQIR 105 (117)
T ss_dssp SCCCCBCCCEE
T ss_pred CccCCCCCCEE
Confidence 99987776543
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=96.94 E-value=0.0019 Score=52.49 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=48.8
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-------------CCCCeEEEee--CceEEEEEecC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-------------SSPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-------------~~~~~~~~~~--~~~~~L~i~~v 735 (803)
...+.+|++++|+|++.|.... .+.|++. |+-+ . ...|+.+..| .+...|.|.++
T Consensus 9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L 88 (120)
T d1dlfh_ 9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL 88 (120)
T ss_dssp CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence 3457889999999999987544 5778873 2211 1 1136667665 44678999999
Q ss_pred CCCCCceeEEEEEE
Q psy2776 736 DSETDAGDYKVVAT 749 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~ 749 (803)
+.+|.+.|.|...
T Consensus 89 -~~eDtAvYYCA~~ 101 (120)
T d1dlfh_ 89 -RAEDTGIYYCTGI 101 (120)
T ss_dssp -CGGGCEEEEEEEE
T ss_pred -cCCCceEEEeeEe
Confidence 7899999999654
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.92 E-value=0.0019 Score=53.19 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=49.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~ 736 (803)
....+.+|++++|+|++.|+... .+.|++. |+- |. ...|+.+..|. +...|.|.++
T Consensus 8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL- 86 (125)
T d1rihh1 8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL- 86 (125)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC-
T ss_pred CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc-
Confidence 34567899999999999986544 4778763 211 11 12466666653 4677999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|++.|.|....
T Consensus 87 ~~eDtAvYYCAR~~ 100 (125)
T d1rihh1 87 TSEDSAVYYCARES 100 (125)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred CcccceEEEEeeeC
Confidence 78999999997553
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.91 E-value=0.0019 Score=53.29 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=50.6
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEeeC--ceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFDG--ENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~~--~~~~L~i~~v~ 736 (803)
....+.+|+++.|+|++.|.... .+.|++. |+-+ . ...|+.+..|. +...|.|.++
T Consensus 7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L- 85 (130)
T d1rhhb1 7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL- 85 (130)
T ss_dssp CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC-
T ss_pred CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc-
Confidence 34567899999999999987544 4778773 2211 1 12467777663 4567999999
Q ss_pred CCCCceeEEEEEEcc
Q psy2776 737 SETDAGDYKVVATNE 751 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~ 751 (803)
+.+|++.|.|.....
T Consensus 86 ~~eDtAvYyCAr~~~ 100 (130)
T d1rhhb1 86 RSDDTAVYYCARDFG 100 (130)
T ss_dssp CGGGCEEEEEEEECC
T ss_pred CCCCcEEEEEEeecC
Confidence 789999999976543
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0023 Score=53.20 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=43.2
Q ss_pred EEecCCeEEEEEEEeecCCC--ceE-EeeC--Ce-e-c------------cCCCCeEEE--eeCceEEEEEecCCCCCCc
Q psy2776 683 TVKEKGTIRLMAKVKASPAP--SIV-WFRN--NK-P-L------------LSSPKKREI--FDGENIILELKEADSETDA 741 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~--~v~-W~~~--~~-~-l------------~~~~~~~~~--~~~~~~~L~i~~v~~~~D~ 741 (803)
.+..|+.++|.|+..+.-.. .+. |++. +. + + ....++... .......|.|.++ +.+|+
T Consensus 11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l-~~~Ds 89 (118)
T d1yjdc1 11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNL-YVNQT 89 (118)
T ss_dssp EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESC-CGGGC
T ss_pred EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCC-CcccC
Confidence 45679999999998765333 233 4442 11 1 0 011223332 3456778999999 79999
Q ss_pred eeEEEEEEcc
Q psy2776 742 GDYKVVATNE 751 (803)
Q Consensus 742 G~Y~C~a~N~ 751 (803)
|.|.|.+...
T Consensus 90 avYyCa~~~~ 99 (118)
T d1yjdc1 90 DIYFCKIEVM 99 (118)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEecc
Confidence 9999987654
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.91 E-value=0.0022 Score=52.71 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=50.1
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|.... .+.|++. |+-+ . ...|+.+..|. +...|.|.++ +
T Consensus 9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL-~ 87 (127)
T d2fx7h1 9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSL-R 87 (127)
T ss_dssp CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeeccc-C
Confidence 3557889999999999986444 4788863 2111 1 12466677663 4677999999 7
Q ss_pred CCCceeEEEEEEcc
Q psy2776 738 ETDAGDYKVVATNE 751 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~ 751 (803)
.+|.+.|.|.....
T Consensus 88 ~eDTavYYCAR~~~ 101 (127)
T d2fx7h1 88 PEDTAVYYCAREGT 101 (127)
T ss_dssp GGGCEEEEEEEEEE
T ss_pred cccceEEEEeeccc
Confidence 89999999976543
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=96.90 E-value=0.0017 Score=53.09 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=49.4
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..|. +..-|.|.++ +
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL-~ 87 (122)
T d1bz7b1 9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL-R 87 (122)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSC-C
T ss_pred CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeee-c
Confidence 3457889999999999997554 4788873 111 11 12466666663 4577999999 7
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|.+.|.|...+
T Consensus 88 ~eDTAvYYCAr~~ 100 (122)
T d1bz7b1 88 SEDTAIYYCTRGG 100 (122)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccCceEEEeecCC
Confidence 8999999997654
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.86 E-value=0.0024 Score=52.38 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=49.5
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
....+.+|+++.|+|++.|.... .+.|++. |+- |. ...|+.+..| .+...|.|.++
T Consensus 7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L- 85 (126)
T d1lmka1 7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL- 85 (126)
T ss_dssp CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC-
T ss_pred CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc-
Confidence 34568889999999999997555 4778772 211 11 1256667665 45678999999
Q ss_pred CCCCceeEEEEE
Q psy2776 737 SETDAGDYKVVA 748 (803)
Q Consensus 737 ~~~D~G~Y~C~a 748 (803)
+.+|.+.|.|..
T Consensus 86 ~~eDTAvYYCAr 97 (126)
T d1lmka1 86 TSEDSAVYYCAR 97 (126)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEee
Confidence 799999999964
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.86 E-value=0.0019 Score=53.93 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=49.0
Q ss_pred eEEecCCeEEEEEEEeecCCC----ceEEeeC--Ceecc----------------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 682 KTVKEKGTIRLMAKVKASPAP----SIVWFRN--NKPLL----------------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~----~v~W~~~--~~~l~----------------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
..+.+|++++|.|++.|.... -+.|++. |+.++ ...|+.+..|. +...|.|.++ +
T Consensus 10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l-~ 88 (132)
T d1tjgh1 10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV-S 88 (132)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC-C
Confidence 467889999999999986532 3779873 21111 12466666653 4577999999 7
Q ss_pred CCCceeEEEEEEc
Q psy2776 738 ETDAGDYKVVATN 750 (803)
Q Consensus 738 ~~D~G~Y~C~a~N 750 (803)
.+|++.|.|....
T Consensus 89 ~eDtAvYYCAr~~ 101 (132)
T d1tjgh1 89 PVDTATYFCAHRR 101 (132)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cccceEEEEEEec
Confidence 9999999997653
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.86 E-value=0.0022 Score=52.73 Aligned_cols=71 Identities=14% Similarity=0.315 Sum_probs=47.2
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eecc-----------------ceeEEE-ecCeeEEEEecCCCCc
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIK-----------------GRNITY-ENNVARFTVVNCSESS 208 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~-----------------~~~~~~-~~~~~~L~i~~v~~~d 208 (803)
..|....+.+|++++|.|...+.....+.||+.. +.+. ..++.. ......|.|...+.+|
T Consensus 6 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~d 85 (112)
T d1fo0b_ 6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQ 85 (112)
T ss_dssp EECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCS
T ss_pred eCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccC
Confidence 3455567789999999999875445579999843 2110 011111 1223568888899999
Q ss_pred ceEEEEEEEcC
Q psy2776 209 EGRYTCKATNE 219 (803)
Q Consensus 209 ~G~Y~C~a~n~ 219 (803)
++.|.|.+...
T Consensus 86 sa~Y~Ca~~~~ 96 (112)
T d1fo0b_ 86 GRTLYCTCSAD 96 (112)
T ss_dssp CEEEEEEEESS
T ss_pred CccEEEEEecC
Confidence 99999987643
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.86 E-value=0.0021 Score=52.36 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=49.4
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------ccC-----------CCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-----------SPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~~-----------~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+- |.. ..|+.+..| .+...|.|.++ +
T Consensus 9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL-~ 87 (124)
T d1yedb1 9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSL-K 87 (124)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESC-C
T ss_pred CceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccccc-C
Confidence 4567889999999999997554 4778873 211 111 246667766 45677999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDTAvYYCAR~ 99 (124)
T d1yedb1 88 SEDSAVYFCTRW 99 (124)
T ss_dssp GGGCEEEEEEEC
T ss_pred CCcceEEEeccc
Confidence 899999999653
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0023 Score=51.83 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=43.6
Q ss_pred eEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEeeCce---EEEEEecCCCCCCce---eEEEEEEcc
Q psy2776 682 KTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIFDGEN---IILELKEADSETDAG---DYKVVATNE 751 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~~~~~---~~L~i~~v~~~~D~G---~Y~C~a~N~ 751 (803)
......+.++|.|.+.|+ |.. .|.|.++|..+..... -....++.. +.|.|..- +=+.| .|+|.|...
T Consensus 16 ~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~--eW~~~~~~~ytC~V~H~ 93 (105)
T d1dn0b2 16 NSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSK--DVMAGTDEHVVCKVQHP 93 (105)
T ss_dssp -----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTT--CC---CCCEEEEEEECT
T ss_pred cccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHH--HhccCCCCEEEEEEEEC
Confidence 344456889999999996 653 7999999876643211 112233433 34555432 11233 699999998
Q ss_pred CcceeeeE
Q psy2776 752 LGSATHGA 759 (803)
Q Consensus 752 ~G~~~~~~ 759 (803)
.+.....+
T Consensus 94 ~~~~~~~v 101 (105)
T d1dn0b2 94 NGNKEKNV 101 (105)
T ss_dssp TCCEEEEE
T ss_pred CCCEEeEE
Confidence 77655443
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0017 Score=52.99 Aligned_cols=87 Identities=22% Similarity=0.430 Sum_probs=61.5
Q ss_pred CCCCCceEEEecCCeEEEEeeCCCCC-CCCCeEEEEEEeecCCCcee--EEEe----eeeeeEEEEeccccCCeEEEEEE
Q psy2776 45 GAPDTPEIVGRSDSSVTLHWRPPQDD-GHSPVTGYVLESHDKDEFMV--WNKI----ETTSTTYEVTKLTTKHEYMFRVA 117 (803)
Q Consensus 45 ~~p~~~~~~~~~~~~v~l~c~~p~~~-g~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~l~i~~~~~~d~g~y~c~ 117 (803)
+||....+......++.|+|.+|... .+..+.+|.+.++....... |... ......+.|.+|.+...|.|+++
T Consensus 10 ~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 89 (109)
T d1va9a1 10 GPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQ 89 (109)
T ss_dssp SCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEE
T ss_pred CCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEEEEE
Confidence 34444456667789999999987554 34678888887665433211 1111 12367899999999999999999
Q ss_pred EEccCccCCCccee
Q psy2776 118 AVNAIGTGPASHNT 131 (803)
Q Consensus 118 a~~~~g~~~~s~~~ 131 (803)
|.|..|.+..+...
T Consensus 90 a~n~~G~g~~S~~v 103 (109)
T d1va9a1 90 AFNRAGTGPSSSEI 103 (109)
T ss_dssp EEETTEECCCCCCE
T ss_pred EEcCCcCCCCCCCE
Confidence 99999988766543
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=96.85 E-value=0.00084 Score=55.36 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=46.8
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec-------cc---------eeEE---EecCeeEEEEecCCCCcc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI-------KG---------RNIT---YENNVARFTVVNCSESSE 209 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~-------~~---------~~~~---~~~~~~~L~i~~v~~~d~ 209 (803)
|....+.+|++++|.|.... ....+.||+... .+ .. .... .......|.|.++.++|+
T Consensus 5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds 83 (112)
T d2cdeb1 5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT 83 (112)
T ss_dssp CSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred CCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence 45567889999999999764 235699998432 11 00 0111 112346799999999999
Q ss_pred eEEEEEEEcCC
Q psy2776 210 GRYTCKATNEA 220 (803)
Q Consensus 210 G~Y~C~a~n~~ 220 (803)
|.|.|.+....
T Consensus 84 a~YyCA~~~~~ 94 (112)
T d2cdeb1 84 SQYLCASSENI 94 (112)
T ss_dssp SEEEEEEECSS
T ss_pred ccEEEEEecCC
Confidence 99999876544
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0035 Score=49.41 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=61.2
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccC
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~ 125 (803)
+|....+......++.|+|.+|. ..+.+|.+.++..+....+.........+.|.+|.+...|.+++.|.+..|.+
T Consensus 4 ~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s 79 (93)
T d2cuma1 4 APRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLL 79 (93)
T ss_dssp CCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTTBCC
T ss_pred cCCCCEEEEeCCCEEEEEEEccc----cccccEEEEEEccccccEEEEECCCccEEEEeCccCCCEEEEEEEEEeCCCCC
Confidence 34444555566889999999874 35778999888877665555555667889999999999999999999988876
Q ss_pred CCc
Q psy2776 126 PAS 128 (803)
Q Consensus 126 ~~s 128 (803)
.+.
T Consensus 80 ~~~ 82 (93)
T d2cuma1 80 PPV 82 (93)
T ss_dssp CCE
T ss_pred CCE
Confidence 543
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.84 E-value=0.003 Score=50.72 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCCCCCceEEEecCCeEEEEeeCC-CCCCCCCeEEEEEEeecCCC--ceeEEE--eeeeeeEEEEeccccCCeEEEEEEE
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPP-QDDGHSPVTGYVLESHDKDE--FMVWNK--IETTSTTYEVTKLTTKHEYMFRVAA 118 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p-~~~g~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a 118 (803)
+.+|....+......+++|+|.++ ....+..+.+|.+..+..+. ...|.. .......+.|.+|.+...+.++.+|
T Consensus 2 ~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a 81 (101)
T d1x4ya1 2 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQC 81 (101)
T ss_dssp CSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred CCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEE
Confidence 445555556667789999999865 34456788899998775432 112332 2334678999999999999999999
Q ss_pred EccCccCCCcceee
Q psy2776 119 VNAIGTGPASHNTR 132 (803)
Q Consensus 119 ~~~~g~~~~s~~~~ 132 (803)
.|..|.+..+....
T Consensus 82 ~n~~G~s~~S~~~~ 95 (101)
T d1x4ya1 82 FNEGGESEFSNVMI 95 (101)
T ss_dssp ECTTCCCCCCCCEE
T ss_pred EcCCCCCCCCCcEE
Confidence 99999988776543
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.83 E-value=0.0026 Score=52.03 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=49.3
Q ss_pred eEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEee--CceEEEEEecCCCC
Q psy2776 682 KTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFD--GENIILELKEADSE 738 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v~~~ 738 (803)
-.+.+|+++.|+|++.|.-.. .+.|++. |+-+ . ...|+.+..| .+...|.|.++ +.
T Consensus 10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL-~~ 88 (125)
T d1op3h1 10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM-RV 88 (125)
T ss_dssp EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC-CG
T ss_pred ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeecc-CC
Confidence 467889999999999986443 4778873 2111 1 1246777766 35678999999 79
Q ss_pred CCceeEEEEEEc
Q psy2776 739 TDAGDYKVVATN 750 (803)
Q Consensus 739 ~D~G~Y~C~a~N 750 (803)
+|.+.|.|....
T Consensus 89 eDTAvYYCAr~~ 100 (125)
T d1op3h1 89 EDTAIYYCARKG 100 (125)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceeEeEeecc
Confidence 999999997653
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=96.82 E-value=0.0026 Score=52.19 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=47.4
Q ss_pred eeEEecCCeEEEEEEEeecCCC----ceEEeeC--Ceecc------C----------CCCeEEEee--CceEEEEEecCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP----SIVWFRN--NKPLL------S----------SPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~----~v~W~~~--~~~l~------~----------~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
...+.+|++++|+|++.|.... .+.|++. |+.+. . ..|+.+..| .+...|.|.++
T Consensus 9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl- 87 (123)
T d1r0ah1 9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTV- 87 (123)
T ss_dssp CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSC-
T ss_pred CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeec-
Confidence 3567889999999999986432 3679873 22111 1 135666655 34577999999
Q ss_pred CCCCceeEEEEEE
Q psy2776 737 SETDAGDYKVVAT 749 (803)
Q Consensus 737 ~~~D~G~Y~C~a~ 749 (803)
+.+|++.|.|...
T Consensus 88 ~~eDsAvYyCAr~ 100 (123)
T d1r0ah1 88 ETADTAIYYCAQS 100 (123)
T ss_dssp CGGGCEEEEEEEE
T ss_pred ccccceEEeeccc
Confidence 7999999999744
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=96.82 E-value=0.0021 Score=51.09 Aligned_cols=69 Identities=10% Similarity=0.196 Sum_probs=41.9
Q ss_pred eecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCC--eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..|+..+|.|.+.|+-+ ..++|++||.++..+... ....+++ -.......+..++...|+|.+.+....
T Consensus 14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~ 87 (97)
T d1uvqb1 14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ 87 (97)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCS
T ss_pred cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCC
Confidence 34677899999998744 578999999887754211 1111222 223333455667778999999987544
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=96.81 E-value=0.0019 Score=52.60 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=48.5
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L-~ 87 (121)
T d2p49b1 9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSL-K 87 (121)
T ss_dssp CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSC-C
T ss_pred CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeec-c
Confidence 3567899999999999987444 4678873 111 11 1236666665 34577999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|++.|.|...
T Consensus 88 ~eDtAvYYCAr~ 99 (121)
T d2p49b1 88 PEDTATYYCAAG 99 (121)
T ss_dssp GGGCEEEEEEES
T ss_pred ccceeEEeeecc
Confidence 899999999753
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.81 E-value=0.0047 Score=45.57 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=55.3
Q ss_pred CeeeecCCcEEEEEEECc-cCCCeeEEEEcCe----ecc---ceeEEEec----CeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 153 DSVAGFQSSVTLECVVSG-VPTPDIKWYKDDS----LIK---GRNITYEN----NVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~----~~~---~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
...+..|+.+.|+|.+.- .-.|.++|-|-.. .+. ........ ....|.+..+-++|.|.|+|.|.-..
T Consensus 12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s 91 (104)
T d1xaua_ 12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS 91 (104)
T ss_dssp EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence 346778999999999973 4567899987432 232 11222222 34678999999999999999998777
Q ss_pred cCee-eEEEEEE
Q psy2776 221 GTAE-TSCTLLV 231 (803)
Q Consensus 221 g~~~-~s~~l~V 231 (803)
+..+ .+.+|.|
T Consensus 92 ~vieSHSvti~V 103 (104)
T d1xaua_ 92 QVINSHSVTIHV 103 (104)
T ss_dssp EEEECCCEEEEE
T ss_pred hheecceEEEEe
Confidence 6544 3666665
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.81 E-value=0.0018 Score=50.76 Aligned_cols=66 Identities=15% Similarity=0.297 Sum_probs=42.4
Q ss_pred cceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
+..++|.|.+.|+ |. ..++|++||..+..+. .......++ .......+..++...|+|.+.+..-.
T Consensus 15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~sL~ 84 (91)
T d3frua1 15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLA 84 (91)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTTSS
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 4578999999996 44 4789999999876542 222222221 22222233445667899999987544
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0014 Score=52.94 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=42.7
Q ss_pred cceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 523 KSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 523 g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
+..++|.|.+.|+-+ ..|+|.+||..+..+... ......+ .+.|.|..-.......|+|.|.+...
T Consensus 20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~ 93 (102)
T d1q0xl2 20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH 93 (102)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence 457899999988743 479999999987654211 1111112 13455554444557799999998643
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=96.80 E-value=0.0025 Score=50.66 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=41.9
Q ss_pred EecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC---eEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 684 VKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK---KREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~---~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
...|+.++|.|.+.|+ |. ..|.|.+||.++..+.. .....++.........+ ...+...|+|.+.-..
T Consensus 13 ~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~~~~ytC~V~H~s 85 (97)
T d1uvqb1 13 EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM-TPQRGDVYTCHVEHPS 85 (97)
T ss_dssp ------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC-CSCTTCCEEEEEECTT
T ss_pred ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc-CCCCCCEEEEEEEeCC
Confidence 3457788999999997 43 47999999988764321 12223344444445555 4567788999998753
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.002 Score=51.04 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=39.8
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe---EEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK---REIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~---~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.++.++|.|.+.|+ |.. .|+|.+||..+..+... ....++.........+ ...+...|+|++.-.
T Consensus 14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v-~~~~~~~ytC~V~H~ 83 (95)
T d1k5na1 14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV-PSGEEQRYTCHVQHE 83 (95)
T ss_dssp ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE-ETTCGGGEEEEEECT
T ss_pred CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE-EcCCCCEEEEEEEEC
Confidence 36689999999998 443 68999999987643221 1111222222222223 234556799999964
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=96.79 E-value=0.0015 Score=53.45 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred eeEEecCCeEEEEEEEeecCC--C--ceEEeeC--Cee------ccC----------CCCeEEEee--CceEEEEEecCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPA--P--SIVWFRN--NKP------LLS----------SPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~--~--~v~W~~~--~~~------l~~----------~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
...+.+|++++|+|++.|+.. . .+.|++. |+. +.. ..|+.+..| .+...|.|.++
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL- 87 (120)
T d1ai1h1 9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISV- 87 (120)
T ss_dssp CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSC-
T ss_pred CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeee-
Confidence 356788999999999998743 2 3679874 222 111 136666665 34577999999
Q ss_pred CCCCceeEEEEEE
Q psy2776 737 SETDAGDYKVVAT 749 (803)
Q Consensus 737 ~~~D~G~Y~C~a~ 749 (803)
+.+|.+.|.|...
T Consensus 88 ~~eDtAvYYCAr~ 100 (120)
T d1ai1h1 88 TNEDTAMYYCSRE 100 (120)
T ss_dssp CGGGCEEEEEEEE
T ss_pred eccceeEEEEEec
Confidence 7999999999644
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=96.78 E-value=0.0024 Score=51.95 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=45.5
Q ss_pred CeeeecCCcEEEEEEECccCCC--eeEEEEcC--eec------c-----------ceeEEE--e--cCeeEEEEecCCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTP--DIKWYKDD--SLI------K-----------GRNITY--E--NNVARFTVVNCSES 207 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~~--~~~------~-----------~~~~~~--~--~~~~~L~i~~v~~~ 207 (803)
.-.+++|++++|.|.+.|.... .+.|++.. +.+ . .+++.. + .+...|+|.+++.+
T Consensus 8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e 87 (119)
T d1kxvc_ 8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD 87 (119)
T ss_dssp CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence 3467889999999999875433 48898742 111 1 012222 2 23457999999999
Q ss_pred cceEEEEEEEcC
Q psy2776 208 SEGRYTCKATNE 219 (803)
Q Consensus 208 d~G~Y~C~a~n~ 219 (803)
|++.|.|.....
T Consensus 88 DtA~YYCAr~~~ 99 (119)
T d1kxvc_ 88 DTAMYYCKPSLR 99 (119)
T ss_dssp GCEEEEEEEEES
T ss_pred CcceEeeeeccc
Confidence 999999976543
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=96.78 E-value=0.00087 Score=53.46 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=44.3
Q ss_pred EecCCeEEEEEEEeecCC--CceEEeeC--Ceec------c----------CCCCeEEEeeC--ceEEEEEecCCCCCCc
Q psy2776 684 VKEKGTIRLMAKVKASPA--PSIVWFRN--NKPL------L----------SSPKKREIFDG--ENIILELKEADSETDA 741 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~p~--~~v~W~~~--~~~l------~----------~~~~~~~~~~~--~~~~L~i~~v~~~~D~ 741 (803)
+.+|++++|.|++.|+-. -.+.|++. |+-+ . ...|+.+..|. +...|.|.++ +.+|+
T Consensus 5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l-~~eDt 83 (107)
T d1sjva_ 5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSL-EPEDT 83 (107)
T ss_dssp CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSC-CGGGC
T ss_pred ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCC-Ccccc
Confidence 567999999999988633 35778874 2211 1 12466676653 4577999999 79999
Q ss_pred eeEEEEE
Q psy2776 742 GDYKVVA 748 (803)
Q Consensus 742 G~Y~C~a 748 (803)
+.|.|..
T Consensus 84 AvYyCA~ 90 (107)
T d1sjva_ 84 AVYYCYT 90 (107)
T ss_dssp SEEEEEE
T ss_pred eeeeEec
Confidence 9999954
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.78 E-value=0.0026 Score=49.60 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=40.7
Q ss_pred ecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe---EEEeeCc---eEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 685 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK---REIFDGE---NIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~---~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..++.++|.|.+.|+ |.. .|.|.+||+.+..+... ....++. .+.|.|.. .+...|+|.+.-.
T Consensus 13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~----~~~~~ytC~V~H~ 83 (89)
T d2mhaa1 13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL----GKEQYYTCHVYHQ 83 (89)
T ss_dssp SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES----STTTTCEEEEECS
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC----cCCCEEEEEEEEC
Confidence 456799999999997 443 68999999988654322 1122232 23455543 3445799999753
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0022 Score=51.73 Aligned_cols=81 Identities=19% Similarity=0.384 Sum_probs=59.7
Q ss_pred CCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
|.+|....+......++.|+|.+|. ..+.+|.+.++..+.......+..+...+.|.+|.+...|.+++++.+..|
T Consensus 1 P~~P~~l~~~~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~~ 76 (102)
T d2cuha1 1 PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPN 76 (102)
T ss_dssp CSSCEEEECCCCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTE
T ss_pred CcCCCccEEEEeCCCEEEEEEEeee----ccceeeEEEEEeccccceeeeeeeeeeeEEEccEEeeEEEEEEEEEEeCCC
Confidence 3444444445566889999999874 357789998877665533344455578999999999999999999999877
Q ss_pred cCCCc
Q psy2776 124 TGPAS 128 (803)
Q Consensus 124 ~~~~s 128 (803)
.+...
T Consensus 77 ~s~~~ 81 (102)
T d2cuha1 77 LTSPA 81 (102)
T ss_dssp ECCCE
T ss_pred CcCCE
Confidence 66543
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=96.77 E-value=0.0022 Score=52.83 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=49.9
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|++++|.|++.|+... .+.|++. |+. |. ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L-~ 87 (127)
T d2fb4h1 9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSL-R 87 (127)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeee-e
Confidence 3467889999999999986443 4778773 111 11 1246667666 35677999999 7
Q ss_pred CCCceeEEEEEEccC
Q psy2776 738 ETDAGDYKVVATNEL 752 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~ 752 (803)
.+|.+.|.|......
T Consensus 88 ~eDTA~YYCAr~~~~ 102 (127)
T d2fb4h1 88 PEDTGVYFCARDGGH 102 (127)
T ss_dssp GGGCEEEEEEEECSS
T ss_pred ecceeEEEEEEecCC
Confidence 899999999765443
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=96.77 E-value=0.0026 Score=52.71 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=47.8
Q ss_pred eEEecCCeEEEEEEEeecCCC----ceEEeeC--Ceecc----------------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 682 KTVKEKGTIRLMAKVKASPAP----SIVWFRN--NKPLL----------------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~----~v~W~~~--~~~l~----------------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
..+.+|++++|+|++.|.... .+.|++. |+.+. ...|+.+..+ .+...|.|.++ +
T Consensus 10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l-~ 88 (126)
T d1etzb1 10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV-D 88 (126)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC-C
T ss_pred ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc-c
Confidence 467889999999999985332 4569863 21111 1236777665 34678999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|++.|.|...
T Consensus 89 ~eDtAvYyCAr~ 100 (126)
T d1etzb1 89 TSDTATYHCARR 100 (126)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccccceEEEEEe
Confidence 999999999854
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=96.76 E-value=0.0014 Score=50.72 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=44.6
Q ss_pred CeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 688 GTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 688 ~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+.++|.|.+.|+ |.. .|.|.+||..+..........++.+..+.+..+ . ....|+|.+.-.
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~-~--~~~~yTC~V~H~ 76 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKY-E--DSNSVTCSVQHD 76 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEE-T--TTTTCEEEEEET
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEec-C--CCCEEEEEEEEC
Confidence 456899999998 443 689999999887665555555677766776666 3 344699999964
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.76 E-value=0.0033 Score=52.03 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=50.3
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|.... .+.|++. |+- |. ...|+.+..|. +...|.|.++ +
T Consensus 8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L-~ 86 (133)
T d1rzfh1 8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGL-R 86 (133)
T ss_dssp CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccC-C
Confidence 4568899999999999987554 3667762 111 10 13567777763 4677999999 7
Q ss_pred CCCceeEEEEEEccC
Q psy2776 738 ETDAGDYKVVATNEL 752 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~ 752 (803)
.+|.+.|.|......
T Consensus 87 ~eDtA~YYCAr~~~~ 101 (133)
T d1rzfh1 87 SDDTAVYYCASNSIA 101 (133)
T ss_dssp GGGCEEEEEEEEECC
T ss_pred CCCCEEEEeeeccCC
Confidence 899999999655433
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.76 E-value=0.0038 Score=51.04 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=49.0
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-----------CCCCeEEEeeC--ceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-----------SSPKKREIFDG--ENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-----------~~~~~~~~~~~--~~~~L~i~~v~ 736 (803)
....+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..|. +...|.|.++
T Consensus 8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L- 86 (124)
T d2b1hh1 8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL- 86 (124)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC-
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc-
Confidence 34567899999999999997654 4678772 111 11 13566777664 4577999999
Q ss_pred CCCCceeEEEEE
Q psy2776 737 SETDAGDYKVVA 748 (803)
Q Consensus 737 ~~~D~G~Y~C~a 748 (803)
+.+|.+.|.|..
T Consensus 87 ~~eDTA~YYCAR 98 (124)
T d2b1hh1 87 KPSDTALYYCAR 98 (124)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccccceEEEEee
Confidence 789999999943
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=96.75 E-value=0.004 Score=49.91 Aligned_cols=70 Identities=4% Similarity=0.014 Sum_probs=46.1
Q ss_pred eecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 521 SVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
..|+..+|.|.+.|+-+ ..+.|++||..+...........+++ +.|. +..+|...|+|.+.+..-.....
T Consensus 16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~---v~~~~~~~ytC~V~H~~l~~p~~ 92 (103)
T d1hdma1 16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLN---FTPEPSDIFSCIVTHEPDRYTAI 92 (103)
T ss_dssp CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEE---ECCCTTCCEEEEEEETTTTEEEE
T ss_pred hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEE---EecCCCCEEEEEEEeCCCCCCEE
Confidence 45778899999999644 47889999998765443333333332 2343 34456668999999985544433
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=96.74 E-value=0.0033 Score=50.89 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=48.9
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc----------CCCCeEEEee--CceEEEEEecCCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL----------SSPKKREIFD--GENIILELKEADSE 738 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~----------~~~~~~~~~~--~~~~~L~i~~v~~~ 738 (803)
...+.+|++++|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.++ ..
T Consensus 9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l-~~ 87 (118)
T d1lo4h1 9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRL-RS 87 (118)
T ss_dssp CCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSC-CG
T ss_pred CceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccc-cC
Confidence 3467889999999999997555 5778873 221 11 1235666665 34577999999 78
Q ss_pred CCceeEEEEEE
Q psy2776 739 TDAGDYKVVAT 749 (803)
Q Consensus 739 ~D~G~Y~C~a~ 749 (803)
+|.+.|.|...
T Consensus 88 eDtA~YyCAr~ 98 (118)
T d1lo4h1 88 EDTAIYYCARG 98 (118)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEeccc
Confidence 99999999654
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=96.74 E-value=0.0018 Score=51.33 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=42.2
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEeeCce---EEEEEecCCCCCCceeEEEEEEccC
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIFDGEN---IILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.++.++|.|.+.|+ |.. .|.|++|+..+..... .....++.. +.|.|. .+|...|+|.+....
T Consensus 15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~----~~~~~~ytC~V~H~s 84 (96)
T d2h26a1 15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA----DGEAAGLSCRVKHSS 84 (96)
T ss_dssp STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE----GGGCTTEEEEEEEGG
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe----CccCCEEEEEEEeCC
Confidence 45689999999996 665 8999999988754321 122223443 335554 355668999998754
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=96.74 E-value=0.0024 Score=52.14 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=49.8
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-------------CCCCeEEEee--CceEEEEEecC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-------------SSPKKREIFD--GENIILELKEA 735 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-------------~~~~~~~~~~--~~~~~L~i~~v 735 (803)
...+.+|+++.|+|++.|.... .+.|++. |+. |. ...|+.+..| .+...|.|.++
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL 88 (122)
T d1q9rb1 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (122)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence 3568889999999999987554 4778873 211 11 1146677765 34577999999
Q ss_pred CCCCCceeEEEEEEc
Q psy2776 736 DSETDAGDYKVVATN 750 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N 750 (803)
+.+|.+.|.|....
T Consensus 89 -~~eDTAvYYCar~~ 102 (122)
T d1q9rb1 89 -RAEDSATYYCARDH 102 (122)
T ss_dssp -CGGGCEEEEEEECC
T ss_pred -ccCcceEEEEEecC
Confidence 79999999998654
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=96.74 E-value=0.002 Score=52.97 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=47.1
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc-------C---------CCCeEEEeeCceEEEEEecCC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL-------S---------SPKKREIFDGENIILELKEAD 736 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~-------~---------~~~~~~~~~~~~~~L~i~~v~ 736 (803)
+...|....+.+|++++|.|...+.-...+.||+. |+.+. . ..++..... ....|.|..+
T Consensus 4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~l~l~~~- 81 (112)
T d1fo0b_ 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV-TDTELRLQVA- 81 (112)
T ss_dssp EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE-ETTEEEEEEE-
T ss_pred EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc-cccEEEEecC-
Confidence 34455567788999999999987665567999984 22111 0 112221111 1234666666
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|++.|.|.+.-
T Consensus 82 ~~~dsa~Y~Ca~~~ 95 (112)
T d1fo0b_ 82 NMSQGRTLYCTCSA 95 (112)
T ss_dssp SCCSCEEEEEEEES
T ss_pred CccCCccEEEEEec
Confidence 67999999999754
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.0027 Score=50.99 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCCCCCceEEEecCCeEEEEeeCCCCCCCC--CeEEEEEEeecCCCceeEE--Eeee--eeeEEEEeccccCCeEEEEEE
Q psy2776 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHS--PVTGYVLESHDKDEFMVWN--KIET--TSTTYEVTKLTTKHEYMFRVA 117 (803)
Q Consensus 44 p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~i~~~~~~d~g~y~c~ 117 (803)
|.+|....+......+++|+|.+|...++. ....|.++++..+....+. .... ....+.|.+|.+...|.++++
T Consensus 2 P~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr 81 (101)
T d1iarb2 2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVR 81 (101)
T ss_dssp CCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEE
T ss_pred cccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEE
Confidence 566666666666788999999988665433 3345777776655432222 2222 246788899999999999999
Q ss_pred EEccCccCCCccee
Q psy2776 118 AVNAIGTGPASHNT 131 (803)
Q Consensus 118 a~~~~g~~~~s~~~ 131 (803)
|.+..|.+..|.-+
T Consensus 82 A~~~~g~g~wSewS 95 (101)
T d1iarb2 82 AWAQAYNTTWSEWS 95 (101)
T ss_dssp EECGGGTCCCCCCC
T ss_pred EEcCCCCCCCcCCC
Confidence 99999887666543
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.71 E-value=0.0012 Score=55.44 Aligned_cols=87 Identities=25% Similarity=0.416 Sum_probs=58.1
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCcee------E-EEe----------eeeeeEEEEec
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMV------W-NKI----------ETTSTTYEVTK 105 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~------~-~~~----------~~~~~~l~i~~ 105 (803)
.|++|....+. ....++.|+|.+|...++ +|..|.++++....... | ... ......+.|.+
T Consensus 7 ~P~aP~~v~v~-~~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 84 (123)
T d1wfta_ 7 GPGAPSTVRIS-KNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHID 84 (123)
T ss_dssp CCCCCEEEEEE-ECSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCB
T ss_pred CCcCCcccEEE-eCCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcC
Confidence 45555444443 346789999999887665 79999998765333211 1 111 11123456778
Q ss_pred cccCCeEEEEEEEEccCccCCCccee
Q psy2776 106 LTTKHEYMFRVAAVNAIGTGPASHNT 131 (803)
Q Consensus 106 ~~~~d~g~y~c~a~~~~g~~~~s~~~ 131 (803)
|.+...|.|+++|.|..|.+..+...
T Consensus 85 L~p~t~Y~frV~A~N~~G~Gp~S~~~ 110 (123)
T d1wfta_ 85 YTSRPAIVFRISAKNEKGYGPATQIR 110 (123)
T ss_dssp CSSSCEEEEEEEEBSSSSBCCCEEEE
T ss_pred CCCCCEEEEEEEEecCCcCCCCCCcE
Confidence 99999999999999999988666543
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0013 Score=53.30 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=43.0
Q ss_pred ecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEE-ecCCe----EEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 522 VKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIF-IDEET----STIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~-~~~~~----~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.+.+++|.|.+.++ |.. .|+|+++|..+..+...... ..++. +.|.|..-.......|+|.|.+...
T Consensus 20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 93 (104)
T d1o0va1 20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH 93 (104)
T ss_dssp CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence 35678999999985 443 78999999988754322221 22222 3455544333446679999999753
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.71 E-value=0.0024 Score=49.80 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=40.7
Q ss_pred ecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 522 VKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEET-----STIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.++.++|.|.+.|+-+ ..++|+++|+.+..+... ....++++ +.|.| ...+...|+|.+.+..
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v---~~~~~~~ytC~V~H~~ 84 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVV---PLGKEQYYTCHVYHQG 84 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEE---ESSTTTTCEEEEECSS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEe---cCcCCCEEEEEEEECC
Confidence 3568999999999755 467999999988754321 11112221 33444 3445557999998864
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.70 E-value=0.0029 Score=51.19 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=45.7
Q ss_pred CeeeecCCcEEEEEEECccCCC--eeEEEEc--Ceec------c--c----------eeE--EEec--CeeEEEEecCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSLI------K--G----------RNI--TYEN--NVARFTVVNCSE 206 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~~------~--~----------~~~--~~~~--~~~~L~i~~v~~ 206 (803)
...+++|++++|.|.+.|.... .+.|++. ++.+ . . +++ ..+. +...|+|.+++.
T Consensus 9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~ 88 (117)
T d1iqdb1 9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS 88 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence 3557789999999999875333 4789873 2211 0 1 112 2222 345799999999
Q ss_pred CcceEEEEEEEcCC
Q psy2776 207 SSEGRYTCKATNEA 220 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~ 220 (803)
+|++.|.|......
T Consensus 89 eDtAvYYCA~~~~~ 102 (117)
T d1iqdb1 89 DDTAVYYCAVPDPD 102 (117)
T ss_dssp GGCEEEEEEECSSS
T ss_pred CcceEEEEeEcCCC
Confidence 99999999765443
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0044 Score=48.43 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=60.0
Q ss_pred CCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc--eeEEEeeeeeeEEEEeccccCCeEEEEEEEEccC
Q psy2776 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAI 122 (803)
Q Consensus 45 ~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~ 122 (803)
+||....+......+++|+|.+|. ..+.+|.+.+...+.. ..+.........++|.+|.+...|.++..|.+..
T Consensus 3 d~P~~l~v~~~s~~s~~l~W~~p~----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 78 (90)
T d1tena_ 3 DAPSQIEVKDVTDTTALITWFKPL----AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGD 78 (90)
T ss_dssp CCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCCcEEEEecCCEEEEEEEeCc----eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeCC
Confidence 455555666677899999999874 3567888877654432 3444455567889999999999999999999988
Q ss_pred ccCCCc
Q psy2776 123 GTGPAS 128 (803)
Q Consensus 123 g~~~~s 128 (803)
|.+.+.
T Consensus 79 g~s~~~ 84 (90)
T d1tena_ 79 MSSNPA 84 (90)
T ss_dssp EECCCE
T ss_pred CEeCCE
Confidence 876543
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.70 E-value=0.0032 Score=50.97 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=45.2
Q ss_pred cCeeeecCCcEEEEEEECccCCC--eeEEEEcC--eec------c--c----------eeEE--Ee--cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP--DIKWYKDD--SLI------K--G----------RNIT--YE--NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~~--~~~------~--~----------~~~~--~~--~~~~~L~i~~v~ 205 (803)
....+++|++++|.|.+.|.... .+.|++.. +.+ . . .++. .+ .+...|+|.+++
T Consensus 7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~ 86 (117)
T d1um5h1 7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT 86 (117)
T ss_dssp CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence 44667899999999999985443 48898732 211 1 1 1222 22 234579999999
Q ss_pred CCcceEEEEEEE
Q psy2776 206 ESSEGRYTCKAT 217 (803)
Q Consensus 206 ~~d~G~Y~C~a~ 217 (803)
.+|++.|.|...
T Consensus 87 ~eDtAvYYCAr~ 98 (117)
T d1um5h1 87 SEDSAVYYCARS 98 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeec
Confidence 999999999643
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=96.70 E-value=0.0024 Score=52.03 Aligned_cols=63 Identities=13% Similarity=0.319 Sum_probs=43.6
Q ss_pred CeeeecCCcEEEEEEECccCCC--eeEEEEc--Ceec------c-----------ceeE--EEe--cCeeEEEEecCCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSLI------K-----------GRNI--TYE--NNVARFTVVNCSES 207 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~~------~-----------~~~~--~~~--~~~~~L~i~~v~~~ 207 (803)
...+++|++++|.|.+.|.... .+.|++. ++.+ . .+++ ..+ .+...|.|.+++.+
T Consensus 9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e 88 (120)
T d1dn0b1 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (120)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence 3567889999999999885543 4889873 2211 1 1122 222 23467999999999
Q ss_pred cceEEEEE
Q psy2776 208 SEGRYTCK 215 (803)
Q Consensus 208 d~G~Y~C~ 215 (803)
|++.|.|.
T Consensus 89 DtA~YYCA 96 (120)
T d1dn0b1 89 DTAVYYCA 96 (120)
T ss_dssp GCEEEEEE
T ss_pred cccEEEEE
Confidence 99999994
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.70 E-value=0.0026 Score=51.32 Aligned_cols=65 Identities=14% Similarity=0.372 Sum_probs=44.4
Q ss_pred CeeeecCCcEEEEEEECccCCC--eeEEEEc--Ceec------c-----------ceeEE--Ee--cCeeEEEEecCCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSLI------K-----------GRNIT--YE--NNVARFTVVNCSES 207 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~~------~-----------~~~~~--~~--~~~~~L~i~~v~~~ 207 (803)
...+++|++++|.|.+.|.... .+.|++. |+.+ . .+++. .+ .+...|+|.+++.+
T Consensus 9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e 88 (117)
T d1c5db1 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (117)
T ss_dssp CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence 3567899999999999975443 4888873 2221 0 11222 22 23467999999999
Q ss_pred cceEEEEEEE
Q psy2776 208 SEGRYTCKAT 217 (803)
Q Consensus 208 d~G~Y~C~a~ 217 (803)
|++.|.|...
T Consensus 89 DtAvYYCAr~ 98 (117)
T d1c5db1 89 DTAIYFCTRE 98 (117)
T ss_dssp GCEEEEEEEC
T ss_pred cceEEEEecc
Confidence 9999999543
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.69 E-value=0.0028 Score=51.66 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=46.0
Q ss_pred CcCeeeecCCcEEEEEEECccCCC--eeEEEEcC--eec------c--c----------ee--EEEec--CeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTP--DIKWYKDD--SLI------K--G----------RN--ITYEN--NVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~~--~~~------~--~----------~~--~~~~~--~~~~L~i~~v 204 (803)
.....+++|++++|.|.+.|.... .+.|++.. +.+ . . ++ +..++ +...|+|.++
T Consensus 8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L 87 (122)
T d1vgeh1 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL 87 (122)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence 345668899999999999975433 48888732 111 0 0 12 22222 3456999999
Q ss_pred CCCcceEEEEEEEc
Q psy2776 205 SESSEGRYTCKATN 218 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n 218 (803)
+.+|++.|.|....
T Consensus 88 ~~eDtA~YYCAr~~ 101 (122)
T d1vgeh1 88 RPEDTAVYYCARDP 101 (122)
T ss_dssp CGGGCEEEEEEEET
T ss_pred CCCcceEEEEeecC
Confidence 99999999997653
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.69 E-value=0.0034 Score=50.89 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=48.9
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------c-----------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------L-----------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|+|++.|+... .+.|++. |+-| . ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L-~ 87 (120)
T d1ad9b1 9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSL-R 87 (120)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccccc-C
Confidence 4568889999999999986554 4778773 2111 1 1246666665 35678999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (120)
T d1ad9b1 88 SEDTAFYFCARE 99 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEEEc
Confidence 999999999643
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0011 Score=54.15 Aligned_cols=82 Identities=28% Similarity=0.411 Sum_probs=59.7
Q ss_pred CCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEe----eeeeeEEEEeccccCCeEEEEEEEEc
Q psy2776 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI----ETTSTTYEVTKLTTKHEYMFRVAAVN 120 (803)
Q Consensus 45 ~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~c~a~~ 120 (803)
.||..... .....+++|+|.+|...+ .++..|.++++..... |... ......+.|.+|.+...|.|+++|.|
T Consensus 9 sPP~~~~~-~~t~~si~l~W~pp~~~~-~~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n 84 (108)
T d1v5ja_ 9 SPPRGLVA-VRTPRGVLLHWDPPELVP-KRLDGYVLEGRQGSQG--WEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFA 84 (108)
T ss_dssp CCCEEEEE-EECSSSEEEEEECCSCCS-SCCCBEEEEEEETTCC--CEEEEEEECSSCCEEECCCCCTTSCEECCBEEEE
T ss_pred CcCCCeEE-EEcCCEEEEEEEecccCC-CceeEEEEEeeeeeee--eeeccccccceeeeEEEEeccCCcEEEEEEEEEe
Confidence 34433333 345778999999986654 5788999988765543 3322 23467899999999999999999999
Q ss_pred cCccCCCcce
Q psy2776 121 AIGTGPASHN 130 (803)
Q Consensus 121 ~~g~~~~s~~ 130 (803)
..|.+..+..
T Consensus 85 ~~g~s~~S~~ 94 (108)
T d1v5ja_ 85 GSFVSDPSNT 94 (108)
T ss_dssp TTEEEEECSC
T ss_pred CCCEeCCcCc
Confidence 9998766543
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.69 E-value=0.0021 Score=51.94 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=45.4
Q ss_pred cCeeeecCCcEEEEEEECccCC--CeeEEEEcC--ee------cc--c----------ee--EEEe--cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPT--PDIKWYKDD--SL------IK--G----------RN--ITYE--NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~--p~i~W~~~~--~~------~~--~----------~~--~~~~--~~~~~L~i~~v~ 205 (803)
....+++|++++|.|.+.|... -.+.|++.. +. +. . ++ +..+ .+...|+|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~ 87 (117)
T d1jpth1 8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence 3456788999999999997543 358888732 21 11 1 11 2222 245679999999
Q ss_pred CCcceEEEEEEEc
Q psy2776 206 ESSEGRYTCKATN 218 (803)
Q Consensus 206 ~~d~G~Y~C~a~n 218 (803)
.+|++.|.|....
T Consensus 88 ~eDTAvYYCAr~~ 100 (117)
T d1jpth1 88 AEDTAVYYCARDT 100 (117)
T ss_dssp GGGCEEEEEEEEC
T ss_pred CCCceEEEEeecC
Confidence 9999999996543
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=96.68 E-value=0.0016 Score=53.58 Aligned_cols=68 Identities=18% Similarity=0.354 Sum_probs=48.1
Q ss_pred eEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------ccC-----------CCCeEEEeeC--ceEEEEEecCCCC
Q psy2776 682 KTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LLS-----------SPKKREIFDG--ENIILELKEADSE 738 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~~-----------~~~~~~~~~~--~~~~L~i~~v~~~ 738 (803)
..+.+|+++.|+|++.|+... .+.|++. |+- |.. ..|+.+..|. +...|.|.++ +.
T Consensus 9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l-~~ 87 (126)
T d1rjca1 9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL-KP 87 (126)
T ss_dssp EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC-CG
T ss_pred ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEecc-Cc
Confidence 457889999999999986554 4778873 221 111 1366777663 4566999999 79
Q ss_pred CCceeEEEEEEc
Q psy2776 739 TDAGDYKVVATN 750 (803)
Q Consensus 739 ~D~G~Y~C~a~N 750 (803)
+|.+.|.|....
T Consensus 88 eDTAvYYCAr~~ 99 (126)
T d1rjca1 88 EDTAMYYCAADT 99 (126)
T ss_dssp GGCEEEEEEECC
T ss_pred ccCceeEEEeec
Confidence 999999997654
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=96.68 E-value=0.0032 Score=52.04 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=49.6
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeCC--ee---c--------c-----------CCCCeEEEee--CceEEEEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRNN--KP---L--------L-----------SSPKKREIFD--GENIILEL 732 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~--~~---l--------~-----------~~~~~~~~~~--~~~~~L~i 732 (803)
...+.+|++++|+|++.|+... .+.|++.. +- | . ...|+.+..| .+...|.|
T Consensus 9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i 88 (127)
T d1i3ua_ 9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM 88 (127)
T ss_dssp CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence 3457889999999999987544 47788741 10 1 0 1136666665 45678999
Q ss_pred ecCCCCCCceeEEEEEEc
Q psy2776 733 KEADSETDAGDYKVVATN 750 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N 750 (803)
.++ +.+|++.|.|.+.-
T Consensus 89 ~~l-~~eDtAvYYCAr~~ 105 (127)
T d1i3ua_ 89 NSL-KPEDTAVYYCAAKT 105 (127)
T ss_dssp CSC-CGGGCEEEEEEEES
T ss_pred ecc-cccceeEEEEEEEe
Confidence 999 78999999998753
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=96.67 E-value=0.0033 Score=51.70 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=48.8
Q ss_pred eeEEecCCeEEEEEEEeecCCC---ceEEeeC--Ceecc----------------CCCCeEEEee--CceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP---SIVWFRN--NKPLL----------------SSPKKREIFD--GENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~--~~~l~----------------~~~~~~~~~~--~~~~~L~i~~v~~ 737 (803)
...+.+|+++.|.|++.|.... .+.|++. |+.++ ...|+.+..| .+...|.|.++ +
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l-~ 87 (127)
T d3cx5j1 9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSV-T 87 (127)
T ss_dssp CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecc-c
Confidence 3467889999999999997542 4789883 32221 1235555554 45678999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDtAvYyCAr~ 99 (127)
T d3cx5j1 88 TEDTATYYCARS 99 (127)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccceEEEeeee
Confidence 999999999754
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0069 Score=48.98 Aligned_cols=65 Identities=22% Similarity=0.420 Sum_probs=51.5
Q ss_pred CeEEEEeeCCCCC---CCCCeEEEEEEeecCCCceeEEEeee-eeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 58 SSVTLHWRPPQDD---GHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 58 ~~v~l~c~~p~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
.++.|+|.+|... ++..+..|.++++..+.. .|..... ....+.|.+|.+...|.|+++|.+..|
T Consensus 21 ~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~-~w~~~~~~~~~~~~i~~L~~~t~Y~frVRa~~~~~ 89 (106)
T d1axib2 21 ADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET-KWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNS 89 (106)
T ss_dssp EEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCS-SCEECCCBSSSEEEEEEEETTSCEEEEEEEEETTS
T ss_pred CeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCc-cceeeeecccceEEECCCCCCCEEEEEEEEEECCC
Confidence 4699999998653 334567899998877666 7877664 467899999999999999999987654
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.66 E-value=0.0021 Score=52.28 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=48.7
Q ss_pred ceeEEecCCeEEEEEEEeecCCC--ceEEeeC--Cee------cc-------------CCCCeEEEee--CceEEEEEec
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKP------LL-------------SSPKKREIFD--GENIILELKE 734 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~------l~-------------~~~~~~~~~~--~~~~~L~i~~ 734 (803)
....+.+|+++.|+|++.|+... .+.|++. |+- |. ...|+.+..| .+...|.|.+
T Consensus 8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~ 87 (121)
T d1nfdf1 8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR 87 (121)
T ss_dssp CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence 34578899999999999997554 3678873 211 11 1224555555 4466799999
Q ss_pred CCCCCCceeEEEEEE
Q psy2776 735 ADSETDAGDYKVVAT 749 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~ 749 (803)
+ +.+|.+.|.|...
T Consensus 88 L-~~eDTAvYYCAr~ 101 (121)
T d1nfdf1 88 L-RVDDTAIYYCTRA 101 (121)
T ss_dssp C-CGGGCEECEEEEE
T ss_pred c-CCCcceEEEEecc
Confidence 9 7899999999654
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0043 Score=51.42 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=42.3
Q ss_pred EEeecceeEEEEEEcCcCCC--e-eEEeeC-Cee---e------------cCCCcEEEE--ecCCeEEEEEeeeccCcCe
Q psy2776 519 RLSVKSQWKVEVKYFGFPRP--E-ISWMKN-GAE---I------------TDSKACRIF--IDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~--~-v~W~~~-g~~---i------------~~~~~~~~~--~~~~~~~L~i~~v~~~dsG 577 (803)
.+..|+.++|.|.+.+.... . +.|++. +.. + ....++++. ...+...|.|.++..+|+|
T Consensus 11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 90 (118)
T d1yjdc1 11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD 90 (118)
T ss_dssp EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence 45679999999998754332 2 335442 110 1 011223332 2344568999999999999
Q ss_pred EEEEEEEc
Q psy2776 578 TYTVTATN 585 (803)
Q Consensus 578 ~Y~C~a~n 585 (803)
.|.|.+..
T Consensus 91 vYyCa~~~ 98 (118)
T d1yjdc1 91 IYFCKIEV 98 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99998754
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=96.65 E-value=0.0039 Score=49.19 Aligned_cols=65 Identities=9% Similarity=0.189 Sum_probs=41.1
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE----EEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR----EIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~----~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.++.++|.|.+.|+ |.. .|.|.+||..+..+.... -..++.........+ ...+...|+|.+.-.
T Consensus 14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v-~~~~~~~ytC~V~H~ 84 (94)
T d1hyrc1 14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRI-CQGEEQRFTCYMEHS 84 (94)
T ss_dssp SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEE-ETTCGGGEEEEEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEE-cCCCCCEEEEEEEEC
Confidence 35679999999997 554 799999999886543221 112233323333333 345556799999853
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=96.65 E-value=0.0028 Score=51.22 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=43.4
Q ss_pred cCeeeecCCcEEEEEEECccCC--CeeEEEEc--Cee------cc--c----------eeEE--Eec--CeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPT--PDIKWYKD--DSL------IK--G----------RNIT--YEN--NVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~--p~i~W~~~--~~~------~~--~----------~~~~--~~~--~~~~L~i~~v~ 205 (803)
....+++|++++|.|.+.|... -.+.|++. ++. +. . +++. .++ +...|+|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~ 87 (118)
T d1nlbh1 8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence 3456789999999999987443 35889873 221 11 1 1222 222 44679999999
Q ss_pred CCcceEEEEE
Q psy2776 206 ESSEGRYTCK 215 (803)
Q Consensus 206 ~~d~G~Y~C~ 215 (803)
.+|++.|.|.
T Consensus 88 ~eDtAvYYCA 97 (118)
T d1nlbh1 88 NEDTATYFCA 97 (118)
T ss_dssp GGGCEEEEEE
T ss_pred cCcceEEEEe
Confidence 9999999994
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.64 E-value=0.0035 Score=51.37 Aligned_cols=65 Identities=18% Similarity=0.410 Sum_probs=43.5
Q ss_pred eeeecCCcEEEEEEECccC----CCeeEEEEc--Ceecc-----------------ceeEEEe----cCeeEEEEecCCC
Q psy2776 154 SVAGFQSSVTLECVVSGVP----TPDIKWYKD--DSLIK-----------------GRNITYE----NNVARFTVVNCSE 206 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p----~p~i~W~~~--~~~~~-----------------~~~~~~~----~~~~~L~i~~v~~ 206 (803)
..+++|++++|.|.+.|.. ...+.|++. ++.+. .+++... .+...|+|.+++.
T Consensus 10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~ 89 (120)
T d2agjh1 10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP 89 (120)
T ss_dssp SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence 4467899999999987632 235789973 22110 1122221 2346799999999
Q ss_pred CcceEEEEEEEc
Q psy2776 207 SSEGRYTCKATN 218 (803)
Q Consensus 207 ~d~G~Y~C~a~n 218 (803)
+|++.|.|....
T Consensus 90 eDsAvYyCAr~~ 101 (120)
T d2agjh1 90 VDTATYYCARTS 101 (120)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceEEeeEecC
Confidence 999999996443
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0032 Score=49.57 Aligned_cols=69 Identities=19% Similarity=0.393 Sum_probs=54.4
Q ss_pred CCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEe--eeeeeEEEEeccccCCeEEEEEEEEccCccCCCc
Q psy2776 57 DSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI--ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128 (803)
Q Consensus 57 ~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s 128 (803)
..++.|+|.+|. ...+.+|.++++..+..-.|... ......++|.+|++...|.++..+.+..|.++.+
T Consensus 15 ~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~ 85 (93)
T d1owwa_ 15 PNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT 85 (93)
T ss_dssp TTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEE
T ss_pred CCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeCCCccCcE
Confidence 368999999874 35799999999876554344444 3456789999999999999999999999876543
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0022 Score=51.79 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=43.0
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEE-E-eeCc---eEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE-I-FDGE---NIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~-~-~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.+.+++|.|.+.|+ |.. .|.|++||..+..+..... . .++. .+.|.|..- .-.....|+|.+......
T Consensus 20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~-~w~~~~~ytC~V~H~~~t 94 (104)
T d1o0va1 20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQK-HWLSDRTYTCQVTYQGHT 94 (104)
T ss_dssp CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHH-HHHTTCCEEEEEEETTEE
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHH-HcCCCCEEEEEEEECCEe
Confidence 45689999999995 555 6999999998864322111 1 2222 234556542 112356699999987543
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.63 E-value=0.0018 Score=53.41 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=48.7
Q ss_pred eeEEecCCeEEEEEEEeecCCC--ceEEeeC--Ceec------cC-----------CCCeEEEeeC--ceEEEEEecCCC
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAP--SIVWFRN--NKPL------LS-----------SPKKREIFDG--ENIILELKEADS 737 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--~~~l------~~-----------~~~~~~~~~~--~~~~L~i~~v~~ 737 (803)
...+.+|++++|+|++.|+... .+.|++. |+-+ .. ..|+.+..|. +...|.|.++ +
T Consensus 9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL-~ 87 (130)
T d1rzga1 9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL-R 87 (130)
T ss_dssp CEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC-C
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec-C
Confidence 4567889999999999987544 5788873 2211 11 2356666663 4566999999 7
Q ss_pred CCCceeEEEEEE
Q psy2776 738 ETDAGDYKVVAT 749 (803)
Q Consensus 738 ~~D~G~Y~C~a~ 749 (803)
.+|.+.|.|...
T Consensus 88 ~eDtA~YYCAr~ 99 (130)
T d1rzga1 88 SEDTAVFYCASP 99 (130)
T ss_dssp GGGCEEEEEEEC
T ss_pred CCccEEEEEEEe
Confidence 899999999754
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0014 Score=52.12 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee--eeeEEEEeccccCCeEEEEEEEEc
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVN 120 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~~ 120 (803)
||++|....+......+++|+|.+|... +.+ +.|.+..+..+....+..... ....+.+.+|.....|.|++.|.|
T Consensus 3 PP~~P~n~~~~~~~~~si~~~W~p~~~~-~~~-~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N 80 (95)
T d1bqua1 3 PPEKPKNLSCIVNEGKKMRCEWDGGRET-HLE-TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN 80 (95)
T ss_dssp CCCCCEEEEEEEETTSCCEEEEECCSCC-SSC-CEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEE
T ss_pred CcCCCeeeEEEEccCCEEEEEEeCcccC-CCc-eEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEEe
Confidence 6777777777777889999999998654 344 578887776555423322222 245567778999999999999999
Q ss_pred cCccCC
Q psy2776 121 AIGTGP 126 (803)
Q Consensus 121 ~~g~~~ 126 (803)
..|.+.
T Consensus 81 ~~G~s~ 86 (95)
T d1bqua1 81 ALGKVT 86 (95)
T ss_dssp TTEEEE
T ss_pred CCcccc
Confidence 999754
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.62 E-value=0.0024 Score=51.74 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=42.9
Q ss_pred CeeeecCCcEEEEEEECccC--CCeeEEEEc--Ceec------c--c----------eeEEE--e--cCeeEEEEecCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVP--TPDIKWYKD--DSLI------K--G----------RNITY--E--NNVARFTVVNCSE 206 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~--~~~~------~--~----------~~~~~--~--~~~~~L~i~~v~~ 206 (803)
...+++|++++|.|.+.|.. ...+.|++. ++.+ . . +++.. + .+...|.|.+++.
T Consensus 9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~ 88 (115)
T d1f3dh1 9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF 88 (115)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence 34577899999999998743 335889873 2211 0 0 12222 2 2345699999999
Q ss_pred CcceEEEEEE
Q psy2776 207 SSEGRYTCKA 216 (803)
Q Consensus 207 ~d~G~Y~C~a 216 (803)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (115)
T d1f3dh1 89 EDSAVYYCAN 98 (115)
T ss_dssp GGCEEEEEEE
T ss_pred CCcEEEEEec
Confidence 9999999953
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0016 Score=52.77 Aligned_cols=67 Identities=18% Similarity=0.486 Sum_probs=43.8
Q ss_pred ecCCcEEEEEEECc-cCC-CeeEEEEcCeeccceeEE-----Eec-C----eeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 157 GFQSSVTLECVVSG-VPT-PDIKWYKDDSLIKGRNIT-----YEN-N----VARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 157 ~~G~~~~L~C~~~g-~p~-p~i~W~~~~~~~~~~~~~-----~~~-~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
..++.++|.|.+.+ .|. ..|.|.++|..+...... .+. + ...|.|..-.......|+|.+.+.....
T Consensus 17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~ 95 (105)
T d1fp5a2 17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP 95 (105)
T ss_dssp SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence 35678999999998 443 479999999987643211 111 1 2346665444455678999999865543
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0016 Score=52.47 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=41.2
Q ss_pred cceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 523 KSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
++.++|.|.+.|+ |. ..|+|++||...............+ .+.|.|..-.....-.|+|.|.+...
T Consensus 19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l 91 (102)
T d1l6xa2 19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 91 (102)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence 5688999999986 43 5889999998765431111111222 13455554433344579999998743
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.60 E-value=0.0012 Score=53.82 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=41.8
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEE----EeeCce---EEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE----IFDGEN---IILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~----~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.++.++|.|.+.|+ |.. .|.|++||..+..+..... ..++.. +.|.|..- .-.....|+|.+......
T Consensus 19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~-~W~~g~~ytC~V~H~~~~ 95 (107)
T d1mjul2 19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKD-EYERHNSYTCEATHKTST 95 (107)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHH-HHHTCCEEEEEEECTTCS
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHH-HhCCCCEEEEEEEECCCC
Confidence 46789999999986 553 7999999998754311111 012222 34566542 112256799999975443
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.59 E-value=0.0031 Score=50.73 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=44.3
Q ss_pred cCeeeecCCcEEEEEEECccCCC--eeEEEE--cCeec-------c-c----------eeEE--Eec--CeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP--DIKWYK--DDSLI-------K-G----------RNIT--YEN--NVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p--~i~W~~--~~~~~-------~-~----------~~~~--~~~--~~~~L~i~~v~ 205 (803)
....+++|+++.|.|.+.|.... .+.|.+ +|+.+ . . +++. .+. +...|.|.+++
T Consensus 8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~ 87 (116)
T d1mjuh1 8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT 87 (116)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence 44567899999999999975443 478887 22211 0 0 1222 222 34679999999
Q ss_pred CCcceEEEEEE
Q psy2776 206 ESSEGRYTCKA 216 (803)
Q Consensus 206 ~~d~G~Y~C~a 216 (803)
.+|++.|.|..
T Consensus 88 ~eDtAvYYCAr 98 (116)
T d1mjuh1 88 SDDSAVYYCAN 98 (116)
T ss_dssp GGGCEEEEEEE
T ss_pred CCCceEEEEcc
Confidence 99999999954
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0041 Score=49.13 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=42.4
Q ss_pred ecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEE-EEecCC--eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 522 VKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACR-IFIDEE--TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~-~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.+..++|.|.+.|+-+ ..|+|+++|+.+..+.... ...+++ ........+...+...|+|++.+..-
T Consensus 14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~L 85 (95)
T d1k5na1 14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL 85 (95)
T ss_dssp ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECcC
Confidence 3568999999999755 4679999999887642111 111122 12222334445556689999998743
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=96.57 E-value=0.0046 Score=49.96 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=45.4
Q ss_pred CeeeecCCcEEEEEEECccCCC--eeEEEEc--Ceec------c-----------cee--EEEe--cCeeEEEEecCCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSLI------K-----------GRN--ITYE--NNVARFTVVNCSES 207 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~~------~-----------~~~--~~~~--~~~~~L~i~~v~~~ 207 (803)
...+++|++++|.|.+.|.... .+.|++. ++.+ . .++ +..+ .+...|+|.+++.+
T Consensus 9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e 88 (116)
T d7fabh1 9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA 88 (116)
T ss_dssp CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence 4567789999999999875433 5889873 2211 0 012 2222 23567999999999
Q ss_pred cceEEEEEEEcC
Q psy2776 208 SEGRYTCKATNE 219 (803)
Q Consensus 208 d~G~Y~C~a~n~ 219 (803)
|++.|.|.....
T Consensus 89 DtAvYyCAr~~~ 100 (116)
T d7fabh1 89 DTAVYYCARNLI 100 (116)
T ss_dssp GCEEEEEEEECS
T ss_pred cceEEEeeeecC
Confidence 999999975443
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.57 E-value=0.0012 Score=53.25 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=40.7
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIFDGE---NIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..+.++|.|.+.|+ |.. .|.|++||.++..... .....++. .+.|.|..- .-.....|+|.+.-.
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~-~w~~~~~ytC~V~H~ 88 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKS-NWEAGNTFTCSVLHE 88 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHH-HHHTTCCEEEEEECT
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHH-HhCCCCEEEEEEEEC
Confidence 35689999999996 543 7999999998753211 11222333 344555432 112356699999865
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.56 E-value=0.0017 Score=52.31 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=41.2
Q ss_pred cceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 523 KSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 523 g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.+.+.|.|.+.|+-+ ..|.|.++|.++..........+.+ .+.|.|..-.......|+|.|.+..
T Consensus 19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~ 90 (102)
T d1i1ca2 19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG 90 (102)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence 457899999988744 4789999998765431111111222 1345555544455568999999864
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=96.56 E-value=0.0038 Score=50.57 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=46.1
Q ss_pred cCeeeecCCcEEEEEEECccCCC--eeEEEEc--Ceec------c--c----------eeEE--Ee--cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSLI------K--G----------RNIT--YE--NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~~------~--~----------~~~~--~~--~~~~~L~i~~v~ 205 (803)
....+++|++++|.|.+.|.... .+.|++. |+.+ . . +++. .+ .+...|+|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~ 87 (118)
T d2fbjh1 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence 34567889999999999875433 4788863 2211 1 1 1122 22 234569999999
Q ss_pred CCcceEEEEEEEcCC
Q psy2776 206 ESSEGRYTCKATNEA 220 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~ 220 (803)
.+|++.|.|......
T Consensus 88 ~eDtAvYYCAr~~~~ 102 (118)
T d2fbjh1 88 SEDTALYYCARLHYY 102 (118)
T ss_dssp GGGCEEEEEEEEETT
T ss_pred CCcceEEEeeEecCC
Confidence 999999999765543
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.55 E-value=0.0017 Score=52.26 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=41.2
Q ss_pred cceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 523 KSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.+.+.|.|.+.|+ |. ..|.|+++|..+............+ .+.|.|..-.......|+|.|.+..
T Consensus 18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 89 (101)
T d1cqka_ 18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG 89 (101)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 4578999999996 54 5899999998775432111111112 2345554433344668999999874
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.55 E-value=0.0036 Score=50.66 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=43.6
Q ss_pred cCeeeecCCcEEEEEEECccCC--CeeEEEE--cCeec------c--c----------ee--EEEe--cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPT--PDIKWYK--DDSLI------K--G----------RN--ITYE--NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~--p~i~W~~--~~~~~------~--~----------~~--~~~~--~~~~~L~i~~v~ 205 (803)
....+++|++++|.|.+.|... -.+.|++ +++.+ . . .+ +..+ .+...|+|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~ 87 (117)
T d1mfah1 8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence 4456788999999999987433 3477876 33211 0 0 11 2222 234679999999
Q ss_pred CCcceEEEEEE
Q psy2776 206 ESSEGRYTCKA 216 (803)
Q Consensus 206 ~~d~G~Y~C~a 216 (803)
.+|++.|.|.-
T Consensus 88 ~eDtAvYYCAr 98 (117)
T d1mfah1 88 SEDSAVYYCTR 98 (117)
T ss_dssp GGGCEEEEEEE
T ss_pred CCcceEEEEec
Confidence 99999999953
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.0071 Score=47.03 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=57.8
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc--eeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
||....+..+...++.|+|.+|. ..+.+|.+.++..... .....+......+.|.+|.+...|.+++.+.+..|
T Consensus 3 ~P~~l~v~~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g 78 (89)
T d1fnfa3 3 SPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGRE 78 (89)
T ss_dssp CCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTE
T ss_pred cCcCCEEEEecCCEEEEEEEeCC----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCCc
Confidence 44455566677899999999874 3567888887754443 23334444578899999999999999999999888
Q ss_pred cCCC
Q psy2776 124 TGPA 127 (803)
Q Consensus 124 ~~~~ 127 (803)
.+.+
T Consensus 79 ~s~p 82 (89)
T d1fnfa3 79 ESPL 82 (89)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 6543
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=96.54 E-value=0.003 Score=50.31 Aligned_cols=66 Identities=17% Similarity=0.373 Sum_probs=44.5
Q ss_pred cCeeeecCCcEEEEEEECccCC--CeeEEEEc--Ceec------c--------------cee--EEEe--cCeeEEEEec
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPT--PDIKWYKD--DSLI------K--------------GRN--ITYE--NNVARFTVVN 203 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~--p~i~W~~~--~~~~------~--------------~~~--~~~~--~~~~~L~i~~ 203 (803)
....+++|++++|.|.+.|... -.+.|++. ++.+ . .++ +..+ .+...|+|.+
T Consensus 8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s 87 (109)
T d2ck0h1 8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN 87 (109)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence 3456789999999999987433 35888772 2211 0 012 2222 2446799999
Q ss_pred CCCCcceEEEEEEE
Q psy2776 204 CSESSEGRYTCKAT 217 (803)
Q Consensus 204 v~~~d~G~Y~C~a~ 217 (803)
++.+|++.|.|.-.
T Consensus 88 L~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 88 LKTEDTGIYYCVRG 101 (109)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CCHhHCEEEEEEEc
Confidence 99999999999644
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.0025 Score=51.34 Aligned_cols=65 Identities=8% Similarity=0.128 Sum_probs=41.2
Q ss_pred cceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCC-e----EEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 523 KSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEE-T----STIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 523 g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~-~----~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
++.+.|.|.+.|+-+ ..|.|++||..+..+... ......+ . +.|.|..-.......|+|.+.+..
T Consensus 20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1rzfl2 20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 92 (102)
T ss_dssp TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 667899999999643 478999999988754211 1111222 1 345554433333557999999874
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.54 E-value=0.0051 Score=50.21 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=44.6
Q ss_pred CeeeecCCcEEEEEEECccC--CCeeEEEEc--Ceec------c--c----------eeEE--Ee--cCeeEEEEecCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVP--TPDIKWYKD--DSLI------K--G----------RNIT--YE--NNVARFTVVNCSE 206 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~--~~~~------~--~----------~~~~--~~--~~~~~L~i~~v~~ 206 (803)
...+++|++++|.|.+.|.. ...+.|++. |+.+ . . +++. .+ .+...|+|.+++.
T Consensus 9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~ 88 (120)
T d1pg7x1 9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS 88 (120)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence 45678899999999998643 235889873 2211 0 0 1222 22 2345799999999
Q ss_pred CcceEEEEEEEc
Q psy2776 207 SSEGRYTCKATN 218 (803)
Q Consensus 207 ~d~G~Y~C~a~n 218 (803)
+|++.|.|....
T Consensus 89 eDtA~YYCAr~~ 100 (120)
T d1pg7x1 89 NDSAVYYCARED 100 (120)
T ss_dssp GGCEEEEEEEEC
T ss_pred CcceEEEeeecC
Confidence 999999997653
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.53 E-value=0.0035 Score=50.72 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=44.0
Q ss_pred cCeeeecCCcEEEEEEECccCCC--eeEEEEc--Cee------cc--c----------ee--EEEe--cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSL------IK--G----------RN--ITYE--NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~------~~--~----------~~--~~~~--~~~~~L~i~~v~ 205 (803)
....+++|++++|.|.+.|.... .+.|++. ++. +. . ++ +..+ .+...|+|.+++
T Consensus 8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~ 87 (118)
T d2jelh1 8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence 34567899999999999875443 4888872 221 11 0 12 2222 234579999999
Q ss_pred CCcceEEEEEE
Q psy2776 206 ESSEGRYTCKA 216 (803)
Q Consensus 206 ~~d~G~Y~C~a 216 (803)
.+|++.|.|.-
T Consensus 88 ~eDTAvYYCAr 98 (118)
T d2jelh1 88 SEDSAIYYCAR 98 (118)
T ss_dssp GGGCEEEEEEE
T ss_pred cCcceeeeEEE
Confidence 99999999943
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=96.53 E-value=0.0037 Score=50.49 Aligned_cols=65 Identities=17% Similarity=0.380 Sum_probs=44.3
Q ss_pred CeeeecCCcEEEEEEECccCCC--eeEEEEc--Ceec------c-----------cee--EEEec--CeeEEEEecCCCC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSLI------K-----------GRN--ITYEN--NVARFTVVNCSES 207 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~~------~-----------~~~--~~~~~--~~~~L~i~~v~~~ 207 (803)
...+++|++++|.|.+.|.... .+.|++. |+.+ . .++ +..+. +...|+|.+++.+
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e 88 (116)
T d1a2yb_ 9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD 88 (116)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence 3457889999999999875443 4788873 2211 0 112 22222 3467999999999
Q ss_pred cceEEEEEEE
Q psy2776 208 SEGRYTCKAT 217 (803)
Q Consensus 208 d~G~Y~C~a~ 217 (803)
|++.|.|.-.
T Consensus 89 DTAvYYCAr~ 98 (116)
T d1a2yb_ 89 DTARYYCARE 98 (116)
T ss_dssp GCEEEEEEEE
T ss_pred cceEEEEEEe
Confidence 9999999654
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=96.52 E-value=0.0043 Score=50.33 Aligned_cols=74 Identities=8% Similarity=0.109 Sum_probs=45.4
Q ss_pred eEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe--EEEeeCceEEEEEecCCCCCC-ceeEEEEEEccCccee
Q psy2776 682 KTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIFDGENIILELKEADSETD-AGDYKVVATNELGSAT 756 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~--~~~~~~~~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~ 756 (803)
.....++.++|.|.+.|+ |.. .|.|.+||..+...... ....++.........+ ..+| ...|+|.+.-..+...
T Consensus 19 ~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v-~~~~w~~~ytC~V~H~s~~~~ 97 (107)
T d1hxmb2 19 AETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTV-PEKSLDKEHRCIVRHENNKNG 97 (107)
T ss_dssp GGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEE-CTGGGGSCEEEEEEETTSGGG
T ss_pred HHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEE-ecccCCCeEEEEEEECCCCCC
Confidence 345667899999999996 554 79999999877543211 1122333333233333 3344 3469999997655543
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=96.52 E-value=0.00034 Score=55.90 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=46.9
Q ss_pred eeccccceeEEEEecCCceeeEEeec--Ceecc------------ccceeEEEE--cCceeEEEEeecCCCCCccEEEEE
Q psy2776 317 LVPHLGDATFQVELSSPDIQVKWLKK--GKEIK------------ESARHIITS--RGTQRKLVIKRVTQDDETDIGVLA 380 (803)
Q Consensus 317 ~~~~g~~~~l~C~~~~p~~~i~W~~~--g~~l~------------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~ 380 (803)
.+.+|++|+|.|........+.|++- |+.+. ...++.+.. ......|.|.+++.+|+|.|.|.+
T Consensus 4 sV~eG~~vtL~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~ 83 (96)
T d1ymmd1 4 SIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCAT 83 (96)
T ss_dssp CCSSCCCCCBCCBCSSCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEE
T ss_pred eECCCCCEEEEEEEeCCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeE
Confidence 46689999999988555678999972 33221 112222222 223467999999999999999988
Q ss_pred ecccc
Q psy2776 381 LNVKS 385 (803)
Q Consensus 381 ~~~~~ 385 (803)
....+
T Consensus 84 ~~~~g 88 (96)
T d1ymmd1 84 DTTSG 88 (96)
T ss_dssp EETTS
T ss_pred ecCCC
Confidence 65544
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0021 Score=48.01 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=49.7
Q ss_pred cCCeEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEc-cCcceeeeEEEEE
Q psy2776 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATN-ELGSATHGARVTV 763 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N-~~G~~~~~~~l~V 763 (803)
.|.+|+|+|.- .+...+.|.+|+..+..... ..+..+.. .|.+.+....+++|-|.|.+.. .-......+.|+.
T Consensus 9 SGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~--~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKA 84 (91)
T d1xiwa_ 9 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 84 (91)
T ss_dssp ETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEE
T ss_pred eCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccc--eEEecccCccccCceEEEEcCCCCCCCcceEEEEEe
Confidence 48999999953 35567999999988764321 11222233 4777777223799999999954 3344455566666
Q ss_pred Ee
Q psy2776 764 DV 765 (803)
Q Consensus 764 ~~ 765 (803)
+|
T Consensus 85 RV 86 (91)
T d1xiwa_ 85 RV 86 (91)
T ss_dssp CC
T ss_pred Ee
Confidence 54
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0011 Score=54.09 Aligned_cols=70 Identities=10% Similarity=0.138 Sum_probs=44.6
Q ss_pred eEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEE---E----eeCc---eEEEEEecCCCCCCceeEEEEEE
Q psy2776 682 KTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE---I----FDGE---NIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~---~----~~~~---~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
..+..|+.++|.|.+.|+ |.. .|.|++||.++..+..... . .++. .+.|.|..- .-.....|+|.+.
T Consensus 15 ~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~-~w~~g~~ytC~V~ 93 (108)
T d1ow0a2 15 EELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAE-DWKKGDTFSCMVG 93 (108)
T ss_dssp TTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHH-HHHHTCCEEEEEE
T ss_pred HHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHH-HhCCCCEEEEEEE
Confidence 345568899999999986 554 7999999998764422111 0 1222 345666543 1123567999998
Q ss_pred ccC
Q psy2776 750 NEL 752 (803)
Q Consensus 750 N~~ 752 (803)
...
T Consensus 94 H~s 96 (108)
T d1ow0a2 94 HEA 96 (108)
T ss_dssp CTT
T ss_pred eCC
Confidence 754
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.51 E-value=0.0038 Score=50.65 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=44.1
Q ss_pred cCeeeecCCcEEEEEEECccCCC--eeEEEEc--Cee------cc--c----------ee--EEEe--cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSL------IK--G----------RN--ITYE--NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~------~~--~----------~~--~~~~--~~~~~L~i~~v~ 205 (803)
....+++|++++|.|.+.|.... .+.|++. ++. +. . ++ +..+ .+...|+|.+++
T Consensus 8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~ 87 (119)
T d1eapb1 8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT 87 (119)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence 44567889999999999875433 4889873 221 11 1 12 2222 234679999999
Q ss_pred CCcceEEEEEE
Q psy2776 206 ESSEGRYTCKA 216 (803)
Q Consensus 206 ~~d~G~Y~C~a 216 (803)
.+|++.|.|..
T Consensus 88 ~eDTAvYYCAr 98 (119)
T d1eapb1 88 SEDSAVYFCKR 98 (119)
T ss_dssp GGGCEEEEEEE
T ss_pred CCcceEEEEEE
Confidence 99999999954
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.51 E-value=0.0042 Score=50.19 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=44.5
Q ss_pred cCeeeecCCcEEEEEEECccCCC--eeEEEEc--Ceec------c-c-----------ee--EEEec--CeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP--DIKWYKD--DSLI------K-G-----------RN--ITYEN--NVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p--~i~W~~~--~~~~------~-~-----------~~--~~~~~--~~~~L~i~~v~ 205 (803)
....+++|+++.|.|.+.|.... .+.|++. ++.+ . . ++ +..++ +...|+|.+++
T Consensus 8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~ 87 (117)
T d1jnhb1 8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT 87 (117)
T ss_dssp CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence 34556789999999999985443 4789872 2211 1 0 12 22222 34579999999
Q ss_pred CCcceEEEEEEE
Q psy2776 206 ESSEGRYTCKAT 217 (803)
Q Consensus 206 ~~d~G~Y~C~a~ 217 (803)
.+|++.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (117)
T d1jnhb1 88 SEDSAVYSCSRG 99 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeec
Confidence 999999999543
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.0076 Score=47.60 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=60.0
Q ss_pred CCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeee-eeEEEEeccccCCeEEEEEEEEcc
Q psy2776 43 APGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT-STTYEVTKLTTKHEYMFRVAAVNA 121 (803)
Q Consensus 43 ~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~c~a~~~ 121 (803)
.|.||....+....+.+++|+|.+|.. ..+..|.++++..+.. .|...... ...+++.+|.+...|.|+++|...
T Consensus 2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~---~~~~~y~v~y~~~~~~-~~~~~~~~~~~~~~~~~L~p~t~Y~frVRa~~~ 77 (95)
T d2b5ic1 2 IPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDH-SWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFN 77 (95)
T ss_dssp ECCCCEEEEEEEEETTEEEEEEECSSC---STTCEEEEEEEETTCS-SCEEEEECSSCEEEECSCCTTSCEEEEEEEECC
T ss_pred CCcCCCCCEEEEEeCCEEEEEECCCCC---ceeEEEEEEEEcCCCc-eeeEeeecccceeEcCCCCCCCEEEEEEEEeeC
Confidence 366777777777789999999998753 4567799988876654 56665553 678999999999999999999865
Q ss_pred Cc
Q psy2776 122 IG 123 (803)
Q Consensus 122 ~g 123 (803)
.+
T Consensus 78 ~~ 79 (95)
T d2b5ic1 78 PL 79 (95)
T ss_dssp SS
T ss_pred CC
Confidence 54
|